BLASTX nr result
ID: Ophiopogon21_contig00032937
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Ophiopogon21_contig00032937
(398 letters)
Database: ./nr
77,306,371 sequences; 28,104,191,420 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AHA12829.1| RNA polymerase beta' subunit [Maranta leuconeura] 58 4e-07
gb|ABD93783.1| RNA polymerase beta chain, partial (chloroplast) ... 58 4e-07
gb|AEX94825.1| RNA polymerase beta' subunit (chloroplast) [Oziro... 60 8e-07
gb|AEX94807.1| RNA polymerase beta' subunit (chloroplast) [Alliu... 59 1e-06
gb|AEZ49489.1| RNA polymerase beta'' subunit, partial (plastid) ... 56 1e-06
ref|YP_003540921.1| DNA-directed RNA polymerase beta' chain [Pho... 59 1e-06
gb|ABD93796.1| RNA polymerase beta chain, partial (chloroplast) ... 59 1e-06
gb|AEX94837.1| RNA polymerase beta' subunit (chloroplast) [Andro... 56 2e-06
ref|YP_006073094.1| RNA polymerase beta' subunit (chloroplast) [... 59 2e-06
gb|ABU85372.1| RNA polymerase beta subunit [Elaeis oleifera] 59 2e-06
gb|ABD93785.1| RNA polymerase beta chain, partial (chloroplast) ... 59 2e-06
ref|YP_009120907.1| RNA polymerase beta' subunit (plastid) [Saba... 58 2e-06
gb|AGE93274.1| RNA polymerase beta' subunit [Chamaedorea seifrizii] 58 2e-06
gb|AEZ49474.1| RNA polymerase beta'' subunit, partial (plastid) ... 58 2e-06
gb|ABD93781.1| RNA polymerase beta chain, partial (chloroplast) ... 58 2e-06
gb|AEX94802.1| RNA polymerase beta' subunit (chloroplast) [Camas... 55 3e-06
gb|ABD93829.1| RNA polymerase beta chain, partial (chloroplast) ... 57 3e-06
gb|AKF01758.1| RNA polymerase beta' subunit (chloroplast) [Iriar... 58 3e-06
gb|AKF01522.1| RNA polymerase beta' subunit (chloroplast) [Geono... 58 3e-06
gb|ABD93730.1| RNA polymerase beta chain, partial (chloroplast) ... 58 3e-06
>gb|AHA12829.1| RNA polymerase beta' subunit [Maranta leuconeura]
Length = 1402
Score = 57.8 bits (138), Expect(2) = 4e-07
Identities = 34/71 (47%), Positives = 44/71 (61%), Gaps = 3/71 (4%)
Frame = -3
Query: 336 LTLNQDQGKKDSTKEVHASFVEVRVNDFIHNLVRLSQLYYFL-YRNLLYGR--FRIDSSN 166
L LN DQ +K S +EVHASFVE+R ND I + +R+ + + Y Y R R+ S N
Sbjct: 836 LVLNWDQEQKGSPEEVHASFVELRTNDLIRDFIRIELVKSTISYTGKRYDRASSRLISDN 895
Query: 165 KLDCTNINTFY 133
LD TNIN+FY
Sbjct: 896 GLDRTNINSFY 906
Score = 22.7 bits (47), Expect(2) = 4e-07
Identities = 10/15 (66%), Positives = 11/15 (73%)
Frame = -1
Query: 374 YILYRNGKSIQVF*H 330
YILY NGKSI+ H
Sbjct: 812 YILYGNGKSIRGISH 826
>gb|ABD93783.1| RNA polymerase beta chain, partial (chloroplast) [Maranta
leuconeura]
Length = 849
Score = 57.8 bits (138), Expect(2) = 4e-07
Identities = 34/71 (47%), Positives = 44/71 (61%), Gaps = 3/71 (4%)
Frame = -3
Query: 336 LTLNQDQGKKDSTKEVHASFVEVRVNDFIHNLVRLSQLYYFL-YRNLLYGR--FRIDSSN 166
L LN DQ +K S +EVHASFVE+R ND I + +R+ + + Y Y R R+ S N
Sbjct: 376 LVLNWDQEQKGSPEEVHASFVELRTNDLIRDFIRIELVKSTISYTGKRYDRASSRLISDN 435
Query: 165 KLDCTNINTFY 133
LD TNIN+FY
Sbjct: 436 GLDRTNINSFY 446
Score = 22.7 bits (47), Expect(2) = 4e-07
Identities = 10/15 (66%), Positives = 11/15 (73%)
Frame = -1
Query: 374 YILYRNGKSIQVF*H 330
YILY NGKSI+ H
Sbjct: 352 YILYGNGKSIRGISH 366
>gb|AEX94825.1| RNA polymerase beta' subunit (chloroplast) [Oziroe biflora]
Length = 1386
Score = 59.7 bits (143), Expect = 8e-07
Identities = 39/90 (43%), Positives = 48/90 (53%), Gaps = 7/90 (7%)
Frame = -3
Query: 381 RGIYPLQKWKVNSGVLTLNQDQGKKDSTKEVHASFVEVRVNDFIHNLVRLSQLYYFLYRN 202
RGIY V + L LN DQ K S +EVHASFVEVR ND I + +R+ +
Sbjct: 824 RGIYHTSIQLVRTS-LVLNWDQEKNGSIEEVHASFVEVRANDLIRDFIRIE----LVKST 878
Query: 201 LLYGRFRIDSS-------NKLDCTNINTFY 133
+ Y R D++ N LDCTNIN FY
Sbjct: 879 ISYTGKRYDTAGSELIPDNGLDCTNINPFY 908
>gb|AEX94807.1| RNA polymerase beta' subunit (chloroplast) [Allium fistulosum]
Length = 1381
Score = 59.3 bits (142), Expect = 1e-06
Identities = 34/75 (45%), Positives = 42/75 (56%), Gaps = 7/75 (9%)
Frame = -3
Query: 336 LTLNQDQGKKDSTKEVHASFVEVRVNDFIHNLVRLSQLYYFLYRNLLYGRFRIDSS---- 169
L LN DQ K S +EVHAS VEVR ND I N +++ + NL Y R D++
Sbjct: 836 LVLNWDQEKNGSIEEVHASLVEVRANDLIQNFIKIE----LVKSNLSYAEKRYDTAGSGL 891
Query: 168 ---NKLDCTNINTFY 133
N LDCTNIN F+
Sbjct: 892 IPDNGLDCTNINPFF 906
>gb|AEZ49489.1| RNA polymerase beta'' subunit, partial (plastid) [Neoastelia
spectabilis]
Length = 1385
Score = 56.2 bits (134), Expect(2) = 1e-06
Identities = 34/75 (45%), Positives = 42/75 (56%), Gaps = 7/75 (9%)
Frame = -3
Query: 336 LTLNQDQGKKDSTKEVHASFVEVRVNDFIHNLVRLSQLYYFLYRNLLYGRFRIDSS---- 169
L LN DQ K S +EVHASFVEVR ND IH+ +R+ + + Y R D++
Sbjct: 837 LVLNWDQEKNGSIEEVHASFVEVRANDLIHDFIRIE----LVKSTISYTGKRYDTAGSGL 892
Query: 168 ---NKLDCTNINTFY 133
N LD TNIN FY
Sbjct: 893 IPDNGLDRTNINPFY 907
Score = 22.7 bits (47), Expect(2) = 1e-06
Identities = 10/15 (66%), Positives = 11/15 (73%)
Frame = -1
Query: 374 YILYRNGKSIQVF*H 330
YILY NGKSI+ H
Sbjct: 813 YILYGNGKSIRGISH 827
>ref|YP_003540921.1| DNA-directed RNA polymerase beta' chain [Phoenix dactylifera]
gi|290790908|gb|ADD63163.1| DNA-directed RNA polymerase
beta' chain (chloroplast) [Phoenix dactylifera]
gi|294620567|gb|ADF28136.1| DNA-directed RNA polymerase
beta' chain (chloroplast) [Phoenix dactylifera]
Length = 1381
Score = 58.9 bits (141), Expect = 1e-06
Identities = 40/86 (46%), Positives = 47/86 (54%), Gaps = 3/86 (3%)
Frame = -3
Query: 381 RGIYPLQKWKVNSGVLTLNQDQGKKDSTKEVHASFVEVRVNDFIHNLVRLSQLYYFL-YR 205
RGIY V + L LN DQ K S +EVHASFVEVR ND I N +R+ + + Y
Sbjct: 817 RGIYHTSIQLVRT-CLVLNWDQEKNGSIEEVHASFVEVRTNDLIRNFIRIELVKSTISYT 875
Query: 204 NLLYGRFR--IDSSNKLDCTNINTFY 133
Y R + S N LD TNIN FY
Sbjct: 876 GKRYDRASSVLISDNGLDRTNINPFY 901
>gb|ABD93796.1| RNA polymerase beta chain, partial (chloroplast) [Tacca chantieri]
Length = 865
Score = 58.9 bits (141), Expect = 1e-06
Identities = 38/87 (43%), Positives = 49/87 (56%), Gaps = 4/87 (4%)
Frame = -3
Query: 381 RGIYPLQKWKVNSGVLTLNQDQGKKDSTKEVHASFVEVRVNDFIHNLVRL----SQLYYF 214
RGIY V + L LN +Q K S +EVHASFVE+R ND I + +R+ S + Y
Sbjct: 376 RGIYHTSIQLVRT-CLVLNWNQEKNGSIEEVHASFVEIRANDLIRDFIRIELIKSTISYT 434
Query: 213 LYRNLLYGRFRIDSSNKLDCTNINTFY 133
RN G + N+L+CTNIN FY
Sbjct: 435 GKRNDTMGS-ELIPDNRLNCTNINPFY 460
>gb|AEX94837.1| RNA polymerase beta' subunit (chloroplast) [Androstephium coeruleum]
Length = 1382
Score = 56.2 bits (134), Expect(2) = 2e-06
Identities = 34/75 (45%), Positives = 43/75 (57%), Gaps = 7/75 (9%)
Frame = -3
Query: 336 LTLNQDQGKKDSTKEVHASFVEVRVNDFIHNLVRLSQLYYFLYRNLLYGRFRIDS----- 172
L LN DQ K S +EVHASFVEVRVND I + +++ + + Y R R D+
Sbjct: 836 LVLNWDQEKNGSIEEVHASFVEVRVNDLIRDFIKIE----LVKSTISYTRKRYDTAGSGL 891
Query: 171 --SNKLDCTNINTFY 133
+N LD TNIN FY
Sbjct: 892 IPNNGLDRTNINPFY 906
Score = 22.3 bits (46), Expect(2) = 2e-06
Identities = 9/11 (81%), Positives = 10/11 (90%)
Frame = -1
Query: 374 YILYRNGKSIQ 342
YILY NGKSI+
Sbjct: 812 YILYGNGKSIR 822
>ref|YP_006073094.1| RNA polymerase beta' subunit (chloroplast) [Elaeis guineensis]
gi|325305698|gb|ADZ10859.1| RNA polymerase beta' subunit
(chloroplast) [Elaeis guineensis]
Length = 1371
Score = 58.5 bits (140), Expect = 2e-06
Identities = 39/86 (45%), Positives = 48/86 (55%), Gaps = 3/86 (3%)
Frame = -3
Query: 381 RGIYPLQKWKVNSGVLTLNQDQGKKDSTKEVHASFVEVRVNDFIHNLVRLSQLYYFL-YR 205
RGIY V + L LN DQ K S +EVHASFVEVR ND I + +R+ + + Y
Sbjct: 817 RGIYHTSIQLVRT-CLVLNWDQEKNGSIEEVHASFVEVRTNDLIRDFIRIELVNSTISYT 875
Query: 204 NLLYGRFR--IDSSNKLDCTNINTFY 133
Y R + S N+LD TNIN FY
Sbjct: 876 GKRYDRASSVLISDNRLDRTNINPFY 901
>gb|ABU85372.1| RNA polymerase beta subunit [Elaeis oleifera]
Length = 1375
Score = 58.5 bits (140), Expect = 2e-06
Identities = 39/86 (45%), Positives = 48/86 (55%), Gaps = 3/86 (3%)
Frame = -3
Query: 381 RGIYPLQKWKVNSGVLTLNQDQGKKDSTKEVHASFVEVRVNDFIHNLVRLSQLYYFL-YR 205
RGIY V + L LN DQ K S +EVHASFVEVR ND I + +R+ + + Y
Sbjct: 821 RGIYHTSIQLVRT-CLVLNWDQEKNGSIEEVHASFVEVRTNDLIRDFIRIELVNSTISYT 879
Query: 204 NLLYGRFR--IDSSNKLDCTNINTFY 133
Y R + S N+LD TNIN FY
Sbjct: 880 GKRYDRASSVLISDNRLDRTNINPFY 905
>gb|ABD93785.1| RNA polymerase beta chain, partial (chloroplast) [Vriesea
splendens]
Length = 849
Score = 58.5 bits (140), Expect = 2e-06
Identities = 38/86 (44%), Positives = 48/86 (55%), Gaps = 3/86 (3%)
Frame = -3
Query: 381 RGIYPLQKWKVNSGVLTLNQDQGKKDSTKEVHASFVEVRVNDFIHNLVRLSQLYYFL-YR 205
RGIY V + L LN DQ + S +EVHASFVEVR ND I + +R+ + + Y
Sbjct: 364 RGIYHTSIQLVRT-CLVLNWDQEQNGSIEEVHASFVEVRANDLIRDFIRIELVKSTISYT 422
Query: 204 NLLYGRFR--IDSSNKLDCTNINTFY 133
Y R + +N LDCTNIN FY
Sbjct: 423 GKRYDRASSGLIPNNGLDCTNINPFY 448
>ref|YP_009120907.1| RNA polymerase beta' subunit (plastid) [Sabal domingensis]
gi|582980412|gb|AHI45604.1| RNA polymerase beta' subunit
[Sabal domingensis]
Length = 1381
Score = 58.2 bits (139), Expect = 2e-06
Identities = 39/86 (45%), Positives = 48/86 (55%), Gaps = 3/86 (3%)
Frame = -3
Query: 381 RGIYPLQKWKVNSGVLTLNQDQGKKDSTKEVHASFVEVRVNDFIHNLVRLSQLYYFL-YR 205
RGIY V + L LN DQ K S +EVHASFVEVR ND I + +R+ + + Y
Sbjct: 817 RGIYHTSIQLVRT-CLVLNWDQEKNGSIEEVHASFVEVRTNDLIRDFIRIELVKSTISYT 875
Query: 204 NLLYGR--FRIDSSNKLDCTNINTFY 133
Y R + + S N LD TNIN FY
Sbjct: 876 GKRYDRASYVLISDNGLDRTNINPFY 901
>gb|AGE93274.1| RNA polymerase beta' subunit [Chamaedorea seifrizii]
Length = 1371
Score = 58.2 bits (139), Expect = 2e-06
Identities = 39/86 (45%), Positives = 48/86 (55%), Gaps = 3/86 (3%)
Frame = -3
Query: 381 RGIYPLQKWKVNSGVLTLNQDQGKKDSTKEVHASFVEVRVNDFIHNLVRLSQLYYFL-YR 205
RGIY V + L LN DQ K S +EVHASFVEVR ND I + +R+ + + Y
Sbjct: 817 RGIYHTSIQLVRT-CLVLNWDQEKNGSIEEVHASFVEVRTNDLIRDFIRIELVKSTISYT 875
Query: 204 NLLYGRFR--IDSSNKLDCTNINTFY 133
Y R + S N+LD TNIN FY
Sbjct: 876 GKRYDRASSVLISDNELDRTNINPFY 901
>gb|AEZ49474.1| RNA polymerase beta'' subunit, partial (plastid) [Chamaedorea
seifrizii]
Length = 1375
Score = 58.2 bits (139), Expect = 2e-06
Identities = 39/86 (45%), Positives = 48/86 (55%), Gaps = 3/86 (3%)
Frame = -3
Query: 381 RGIYPLQKWKVNSGVLTLNQDQGKKDSTKEVHASFVEVRVNDFIHNLVRLSQLYYFL-YR 205
RGIY V + L LN DQ K S +EVHASFVEVR ND I + +R+ + + Y
Sbjct: 821 RGIYHTSIQLVRT-CLVLNWDQEKNGSIEEVHASFVEVRTNDLIRDFIRIELVKSTISYT 879
Query: 204 NLLYGRFR--IDSSNKLDCTNINTFY 133
Y R + S N+LD TNIN FY
Sbjct: 880 GKRYDRASSVLISDNELDRTNINPFY 905
>gb|ABD93781.1| RNA polymerase beta chain, partial (chloroplast) [Chamaedorea
tenella]
Length = 847
Score = 58.2 bits (139), Expect = 2e-06
Identities = 39/86 (45%), Positives = 48/86 (55%), Gaps = 3/86 (3%)
Frame = -3
Query: 381 RGIYPLQKWKVNSGVLTLNQDQGKKDSTKEVHASFVEVRVNDFIHNLVRLSQLYYFL-YR 205
RGIY V + L LN DQ K S +EVHASFVEVR ND I + +R+ + + Y
Sbjct: 363 RGIYHTSIQLVRT-CLVLNWDQEKNGSIEEVHASFVEVRTNDLIRDFIRIELVKSTISYT 421
Query: 204 NLLYGRFR--IDSSNKLDCTNINTFY 133
Y R + S N+LD TNIN FY
Sbjct: 422 GKRYDRASSVLISDNELDRTNINPFY 447
>gb|AEX94802.1| RNA polymerase beta' subunit (chloroplast) [Camassia scilloides]
Length = 1385
Score = 55.1 bits (131), Expect(2) = 3e-06
Identities = 34/75 (45%), Positives = 41/75 (54%), Gaps = 7/75 (9%)
Frame = -3
Query: 336 LTLNQDQGKKDSTKEVHASFVEVRVNDFIHNLVRLSQLYYFLYRNLLYGRFRIDSS---- 169
L LN DQ K S +EVHASFVEVR ND I N +R+ + + Y R D++
Sbjct: 836 LVLNWDQEKNGSIEEVHASFVEVRANDLIRNFIRIE----LVKSTISYTGKRYDTAGSGL 891
Query: 168 ---NKLDCTNINTFY 133
N LD TNIN FY
Sbjct: 892 IPDNGLDRTNINPFY 906
Score = 22.7 bits (47), Expect(2) = 3e-06
Identities = 10/15 (66%), Positives = 11/15 (73%)
Frame = -1
Query: 374 YILYRNGKSIQVF*H 330
YILY NGKSI+ H
Sbjct: 812 YILYGNGKSIRGISH 826
>gb|ABD93829.1| RNA polymerase beta chain, partial (chloroplast) [Pleea tenuifolia]
Length = 821
Score = 57.0 bits (136), Expect(2) = 3e-06
Identities = 35/72 (48%), Positives = 43/72 (59%), Gaps = 4/72 (5%)
Frame = -3
Query: 336 LTLNQDQGKKDSTKEVHASFVEVRVNDFIHNLVRL----SQLYYFLYRNLLYGRFRIDSS 169
L LN DQ + S +EVHASFVEVR ND I + +R+ S + Y R+ + G I
Sbjct: 349 LVLNWDQEQNGSMEEVHASFVEVRANDLIRDFIRIELVKSPISYTGKRSDMAGSGLI-PH 407
Query: 168 NKLDCTNINTFY 133
N LDCTNIN FY
Sbjct: 408 NGLDCTNINPFY 419
Score = 20.8 bits (42), Expect(2) = 3e-06
Identities = 9/15 (60%), Positives = 10/15 (66%)
Frame = -1
Query: 374 YILYRNGKSIQVF*H 330
YILY NGK I+ H
Sbjct: 325 YILYGNGKPIRGISH 339
>gb|AKF01758.1| RNA polymerase beta' subunit (chloroplast) [Iriartea deltoidea]
Length = 1381
Score = 57.8 bits (138), Expect = 3e-06
Identities = 39/86 (45%), Positives = 47/86 (54%), Gaps = 3/86 (3%)
Frame = -3
Query: 381 RGIYPLQKWKVNSGVLTLNQDQGKKDSTKEVHASFVEVRVNDFIHNLVRLSQLYYFL-YR 205
RGIY V + L LN DQ K S +EVHASFVEVR ND I + +R+ + + Y
Sbjct: 817 RGIYHTSIQLVRT-CLVLNWDQEKNSSIEEVHASFVEVRTNDLIRDFIRIELVKSTIPYT 875
Query: 204 NLLYGRFR--IDSSNKLDCTNINTFY 133
Y R + S N LD TNIN FY
Sbjct: 876 GKRYDRANSVLISDNGLDRTNINPFY 901
>gb|AKF01522.1| RNA polymerase beta' subunit (chloroplast) [Geonoma undata subsp.
dussiana]
Length = 1371
Score = 57.8 bits (138), Expect = 3e-06
Identities = 39/86 (45%), Positives = 48/86 (55%), Gaps = 3/86 (3%)
Frame = -3
Query: 381 RGIYPLQKWKVNSGVLTLNQDQGKKDSTKEVHASFVEVRVNDFIHNLVRLSQLYYFL-YR 205
RGIY V + L LN DQ K S +EVHASFVEVR ND I + +R+ + + Y
Sbjct: 817 RGIYHTSIQLVRT-CLVLNWDQEKNGSIEEVHASFVEVRTNDLIRDFIRIELVKSTISYT 875
Query: 204 NLLYGRFR--IDSSNKLDCTNINTFY 133
Y R + S N LD TNIN+FY
Sbjct: 876 GKRYDRASSVLISDNGLDRTNINSFY 901
>gb|ABD93730.1| RNA polymerase beta chain, partial (chloroplast) [Butomus
umbellatus]
Length = 824
Score = 57.8 bits (138), Expect = 3e-06
Identities = 39/87 (44%), Positives = 47/87 (54%), Gaps = 4/87 (4%)
Frame = -3
Query: 381 RGIYPLQKWKVNSGVLTLNQDQGKKDSTKEVHASFVEVRVNDFIHNLVRL----SQLYYF 214
RGIY V + L LN DQ K S +EVHASFVE+R N I + +R+ S + Y
Sbjct: 338 RGIYHTSIQLVRT-CLVLNWDQEKNGSIEEVHASFVEIRTNGLIRDFIRIELVQSPISYI 396
Query: 213 LYRNLLYGRFRIDSSNKLDCTNINTFY 133
+ RN G I N L CTNIN FY
Sbjct: 397 VKRNDTVGSGFI-CHNGLGCTNINPFY 422