BLASTX nr result
ID: Ophiopogon21_contig00030341
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Ophiopogon21_contig00030341
(540 letters)
Database: ./nr
77,306,371 sequences; 28,104,191,420 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|EXX50149.1| gag-pol fusion protein [Rhizophagus irregularis D... 72 9e-28
dbj|BAA22288.1| polyprotein [Oryza australiensis] 71 3e-26
gb|AAM74249.1|AC074355_11 Putative retroelement [Oryza sativa Ja... 69 1e-25
gb|AAP52343.2| retrotransposon protein, putative, Ty1-copia subc... 69 1e-25
gb|ABA98367.2| retrotransposon protein, putative, Ty1-copia subc... 73 2e-25
emb|CAE03845.1| OSJNBb0089K06.4 [Oryza sativa Japonica Group] 73 2e-25
emb|CAN77149.1| hypothetical protein VITISV_019364 [Vitis vinifera] 89 3e-25
gb|AAV85747.1| Integrase core domain, putative [Oryza sativa Jap... 71 3e-25
gb|AAX94813.1| retrotransposon protein, putative, Ty1-copia sub-... 74 2e-23
gb|ABF97047.1| retrotransposon protein, putative, Ty1-copia subc... 74 4e-23
gb|AAP44605.1| putative polyprotein [Oryza sativa Japonica Group] 74 4e-23
gb|ADB85429.1| putative retrotransposon protein [Phyllostachys e... 72 8e-23
ref|XP_010087941.1| Retrovirus-related Pol polyprotein from tran... 80 8e-23
gb|ABF97213.1| retrotransposon protein, putative, Ty1-copia subc... 65 4e-22
gb|ABF94883.1| transposon protein, putative, unclassified [Oryza... 70 1e-21
emb|CAE03687.2| OSJNBb0026E15.5 [Oryza sativa Japonica Group] 70 3e-21
emb|CAE02960.2| OSJNBb0050N09.11 [Oryza sativa Japonica Group] 70 7e-21
emb|CAE04259.3| OSJNBa0089N06.20 [Oryza sativa Japonica Group] 70 7e-21
gb|ABF96044.1| transposon protein, putative, unclassified [Oryza... 70 7e-21
gb|AAT69633.1| putative polyprotein [Oryza sativa Japonica Group] 70 7e-21
>gb|EXX50149.1| gag-pol fusion protein [Rhizophagus irregularis DAOM 197198w]
Length = 1303
Score = 72.0 bits (175), Expect(3) = 9e-28
Identities = 39/76 (51%), Positives = 52/76 (68%)
Frame = -1
Query: 360 KYLSNEFIECLAQTGIMSQLSAPGTLQQNMVSERRNRILLGMVR*MTSYSDLLSYLWRYV 181
+YLS EF++ L + GI+SQL+ P T Q N V+ERRNR LL MVR M S + L + W Y
Sbjct: 544 EYLSIEFLDYLKECGIVSQLTPPRTPQLNGVAERRNRTLLDMVRSMMSRASLPIHFWGYA 603
Query: 180 LITSIYLLNLVSSKSV 133
L T+ ++LNLV +K V
Sbjct: 604 LETAAHILNLVPTKKV 619
Score = 60.8 bits (146), Expect(3) = 9e-28
Identities = 30/55 (54%), Positives = 36/55 (65%)
Frame = -2
Query: 530 REGYLCYVTISDDYSRYEYTCLLRHKSGVFEVFKEIKAEAEKQLDRSI*SLRLDR 366
++G YVT +DD+SRY Y L++HKS FE FKE K E E QL R I LR DR
Sbjct: 487 KDGTRFYVTFTDDFSRYGYIYLIKHKSDTFEKFKEFKNEVENQLGRKIKMLRSDR 541
Score = 37.7 bits (86), Expect(3) = 9e-28
Identities = 17/39 (43%), Positives = 24/39 (61%)
Frame = -2
Query: 128 KTPRE**IGRKPSLFNLRIWSCSAHVLKGRTDKLEARSK 12
KTP E G+ PSL ++++W C A V + DKL RS+
Sbjct: 621 KTPHEMWTGKVPSLAHIKVWGCEAFVRRETQDKLAERSE 659
>dbj|BAA22288.1| polyprotein [Oryza australiensis]
Length = 1317
Score = 70.9 bits (172), Expect(3) = 3e-26
Identities = 45/87 (51%), Positives = 52/87 (59%)
Frame = -1
Query: 393 KYIVSSIGSKEKYLSNEFIECLAQTGIMSQLSAPGTLQQNMVSERRNRILLGMVR*MTSY 214
K++ S G + Y+S EF L GI+ QL+ PGT Q N VSERRNR LL MVR M S
Sbjct: 560 KFLRSDRGGE--YVSQEFGNHLKDCGIVPQLTPPGTPQWNGVSERRNRTLLDMVRSMMSQ 617
Query: 213 SDLLSYLWRYVLITSIYLLNLVSSKSV 133
SDL W Y L T+ LN V SKSV
Sbjct: 618 SDLPLSFWGYALETAALTLNRVPSKSV 644
Score = 57.8 bits (138), Expect(3) = 3e-26
Identities = 28/56 (50%), Positives = 37/56 (66%)
Frame = -2
Query: 533 AREGYLCYVTISDDYSRYEYTCLLRHKSGVFEVFKEIKAEAEKQLDRSI*SLRLDR 366
AR GY ++T +DD+SRY Y L+RHKS FE FKE + E + L ++I LR DR
Sbjct: 511 ARGGYQYFITFTDDFSRYGYIYLMRHKSESFEKFKEFQNEVQNHLGKTIKFLRSDR 566
Score = 37.0 bits (84), Expect(3) = 3e-26
Identities = 18/38 (47%), Positives = 25/38 (65%)
Frame = -2
Query: 128 KTPRE**IGRKPSLFNLRIWSCSAHVLKGRTDKLEARS 15
KTP E G+ PSL L+IW C A+V + ++DKL +S
Sbjct: 646 KTPYEIWTGQPPSLSFLKIWGCEAYVKRLQSDKLTPKS 683
>gb|AAM74249.1|AC074355_11 Putative retroelement [Oryza sativa Japonica Group]
Length = 700
Score = 68.9 bits (167), Expect(3) = 1e-25
Identities = 42/87 (48%), Positives = 54/87 (62%)
Frame = -1
Query: 393 KYIVSSIGSKEKYLSNEFIECLAQTGIMSQLSAPGTLQQNMVSERRNRILLGMVR*MTSY 214
KY+ S G + Y S EF L + GI+ QL+ PGT Q N VS+RRNR LL MVR M S
Sbjct: 109 KYLRSDRGGE--YWSLEFGNHLKECGIVPQLTPPGTPQLNGVSKRRNRTLLDMVRSMMSQ 166
Query: 213 SDLLSYLWRYVLITSIYLLNLVSSKSV 133
+DL W Y L T+++ +N V SKS+
Sbjct: 167 TDLPLSFWGYALETAVFTVNRVPSKSM 193
Score = 55.5 bits (132), Expect(3) = 1e-25
Identities = 27/56 (48%), Positives = 36/56 (64%)
Frame = -2
Query: 533 AREGYLCYVTISDDYSRYEYTCLLRHKSGVFEVFKEIKAEAEKQLDRSI*SLRLDR 366
AR G+ ++ +DD+SRY Y L+RHKS FE FKE E + LD++I LR DR
Sbjct: 60 ARGGFGYFIIFTDDFSRYGYVYLMRHKSESFEKFKEFHNEVQNHLDKTIKYLRSDR 115
Score = 38.9 bits (89), Expect(3) = 1e-25
Identities = 18/39 (46%), Positives = 26/39 (66%)
Frame = -2
Query: 128 KTPRE**IGRKPSLFNLRIWSCSAHVLKGRTDKLEARSK 12
KTP E G++PSL L+IW C +V + ++DKL +SK
Sbjct: 195 KTPYEIWTGKRPSLSFLKIWGCEVYVKRLQSDKLTPKSK 233
>gb|AAP52343.2| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 655
Score = 68.9 bits (167), Expect(3) = 1e-25
Identities = 42/87 (48%), Positives = 54/87 (62%)
Frame = -1
Query: 393 KYIVSSIGSKEKYLSNEFIECLAQTGIMSQLSAPGTLQQNMVSERRNRILLGMVR*MTSY 214
KY+ S G + Y S EF L + GI+ QL+ PGT Q N VS+RRNR LL MVR M S
Sbjct: 109 KYLRSDRGGE--YWSLEFGNHLKECGIVPQLTPPGTPQLNGVSKRRNRTLLDMVRSMMSQ 166
Query: 213 SDLLSYLWRYVLITSIYLLNLVSSKSV 133
+DL W Y L T+++ +N V SKS+
Sbjct: 167 TDLPLSFWGYALETAVFTVNRVPSKSM 193
Score = 55.5 bits (132), Expect(3) = 1e-25
Identities = 27/56 (48%), Positives = 36/56 (64%)
Frame = -2
Query: 533 AREGYLCYVTISDDYSRYEYTCLLRHKSGVFEVFKEIKAEAEKQLDRSI*SLRLDR 366
AR G+ ++ +DD+SRY Y L+RHKS FE FKE E + LD++I LR DR
Sbjct: 60 ARGGFGYFIIFTDDFSRYGYVYLMRHKSESFEKFKEFHNEVQNHLDKTIKYLRSDR 115
Score = 38.9 bits (89), Expect(3) = 1e-25
Identities = 18/39 (46%), Positives = 26/39 (66%)
Frame = -2
Query: 128 KTPRE**IGRKPSLFNLRIWSCSAHVLKGRTDKLEARSK 12
KTP E G++PSL L+IW C +V + ++DKL +SK
Sbjct: 195 KTPYEIWTGKRPSLSFLKIWGCEVYVKRLQSDKLTPKSK 233
>gb|ABA98367.2| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1745
Score = 73.2 bits (178), Expect(3) = 2e-25
Identities = 46/87 (52%), Positives = 54/87 (62%)
Frame = -1
Query: 393 KYIVSSIGSKEKYLSNEFIECLAQTGIMSQLSAPGTLQQNMVSERRNRILLGMVR*MTSY 214
KY+ S G + YLS EF L GI+ QL+ PGT Q N VSERRNR LL MVR M S
Sbjct: 1036 KYLRSDHGGE--YLSLEFGNHLKGCGIVPQLTPPGTPQWNGVSERRNRTLLNMVRSMMSQ 1093
Query: 213 SDLLSYLWRYVLITSIYLLNLVSSKSV 133
++LL W Y L T+ + LN V SKSV
Sbjct: 1094 TNLLLSFWGYALETAAFTLNRVPSKSV 1120
Score = 52.8 bits (125), Expect(3) = 2e-25
Identities = 26/55 (47%), Positives = 36/55 (65%)
Frame = -2
Query: 533 AREGYLCYVTISDDYSRYEYTCLLRHKSGVFEVFKEIKAEAEKQLDRSI*SLRLD 369
AR G+ ++T +DD+SRY Y L+RHKS FE FKE + E + L ++I LR D
Sbjct: 987 ARCGFGYFITFTDDFSRYGYVYLMRHKSESFEKFKEFQNEVQNHLRKTIKYLRSD 1041
Score = 37.0 bits (84), Expect(3) = 2e-25
Identities = 17/38 (44%), Positives = 25/38 (65%)
Frame = -2
Query: 128 KTPRE**IGRKPSLFNLRIWSCSAHVLKGRTDKLEARS 15
KTP E G++PSL L+IW C +V + ++DKL +S
Sbjct: 1122 KTPYEIWTGKRPSLSFLKIWGCEVYVKRLQSDKLTPKS 1159
>emb|CAE03845.1| OSJNBb0089K06.4 [Oryza sativa Japonica Group]
Length = 873
Score = 72.8 bits (177), Expect(3) = 2e-25
Identities = 45/87 (51%), Positives = 54/87 (62%)
Frame = -1
Query: 393 KYIVSSIGSKEKYLSNEFIECLAQTGIMSQLSAPGTLQQNMVSERRNRILLGMVR*MTSY 214
KY+ S G + YLS EF L + GI+ QL+ PGT Q N VSERRNR LL MV+ M S
Sbjct: 354 KYLRSDRGGE--YLSLEFGNHLKECGIVPQLTPPGTPQWNRVSERRNRTLLDMVQSMMSQ 411
Query: 213 SDLLSYLWRYVLITSIYLLNLVSSKSV 133
+DL W Y L T+ + LN V SKSV
Sbjct: 412 TDLPLCFWGYALETAAFTLNRVPSKSV 438
Score = 55.8 bits (133), Expect(3) = 2e-25
Identities = 27/56 (48%), Positives = 37/56 (66%)
Frame = -2
Query: 533 AREGYLCYVTISDDYSRYEYTCLLRHKSGVFEVFKEIKAEAEKQLDRSI*SLRLDR 366
AR G+ ++T +DD+SRY Y L+RHKS FE FKE + E + L ++I LR DR
Sbjct: 305 ARGGFGYFITFTDDFSRYVYVYLMRHKSESFEKFKEFQNEVQNHLGKTIKYLRSDR 360
Score = 33.9 bits (76), Expect(3) = 2e-25
Identities = 16/38 (42%), Positives = 24/38 (63%)
Frame = -2
Query: 128 KTPRE**IGRKPSLFNLRIWSCSAHVLKGRTDKLEARS 15
KT E G++PSL L+IW C +V + ++DKL +S
Sbjct: 440 KTSYEIWTGKRPSLSFLKIWGCEVYVKRLQSDKLTPKS 477
>emb|CAN77149.1| hypothetical protein VITISV_019364 [Vitis vinifera]
Length = 1544
Score = 89.0 bits (219), Expect(2) = 3e-25
Identities = 47/77 (61%), Positives = 57/77 (74%)
Frame = -1
Query: 360 KYLSNEFIECLAQTGIMSQLSAPGTLQQNMVSERRNRILLGMVR*MTSYSDLLSYLWRYV 181
+Y+S EFI L++ GI SQLSAPG QQN V+ERRNR L+ MVR M SYSDL LW +
Sbjct: 893 EYISREFITFLSEQGITSQLSAPGMPQQNGVAERRNRTLMEMVRSMMSYSDLPISLWGHA 952
Query: 180 LITSIYLLNLVSSKSVP 130
+ T+ Y+LNLV SKSVP
Sbjct: 953 IETAAYILNLVPSKSVP 969
Score = 52.8 bits (125), Expect(2) = 3e-25
Identities = 28/57 (49%), Positives = 37/57 (64%)
Frame = -2
Query: 539 IKAREGYLCYVTISDDYSRYEYTCLLRHKSGVFEVFKEIKAEAEKQLDRSI*SLRLD 369
++AR G+ +VT +DDYSRY Y LL KS FE FK KAE E++ + I +LR D
Sbjct: 833 VQARGGFEYFVTFTDDYSRYGYIYLLCRKSECFEKFKAFKAEMEQRHGKYIKTLRSD 889
>gb|AAV85747.1| Integrase core domain, putative [Oryza sativa Japonica Group]
gi|62701883|gb|AAX92956.1| retrotransposon protein,
putative, Ty1-copia sub-class [Oryza sativa Japonica
Group] gi|108864259|gb|ABA92827.2| retrotransposon
protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1184
Score = 71.2 bits (173), Expect(3) = 3e-25
Identities = 45/87 (51%), Positives = 54/87 (62%)
Frame = -1
Query: 393 KYIVSSIGSKEKYLSNEFIECLAQTGIMSQLSAPGTLQQNMVSERRNRILLGMVR*MTSY 214
KY+ S G + YLS EF L + GI+ QL+ PGT Q N VSE RNR LL MVR M S
Sbjct: 536 KYLRSDRGGE--YLSLEFGNHLKECGIVPQLTPPGTPQWNGVSEWRNRTLLDMVRSMMSQ 593
Query: 213 SDLLSYLWRYVLITSIYLLNLVSSKSV 133
++LL W Y L T+ + LN V SKSV
Sbjct: 594 TNLLLSFWGYALETTAFTLNSVPSKSV 620
Score = 53.5 bits (127), Expect(3) = 3e-25
Identities = 27/56 (48%), Positives = 35/56 (62%)
Frame = -2
Query: 533 AREGYLCYVTISDDYSRYEYTCLLRHKSGVFEVFKEIKAEAEKQLDRSI*SLRLDR 366
AR G+ + T +DD+SRY Y L+RHKS FE FKE E + L ++I LR DR
Sbjct: 487 ARGGFGYFFTFTDDFSRYGYVYLMRHKSESFEKFKEFHNEVQNHLGKTIKYLRSDR 542
Score = 37.0 bits (84), Expect(3) = 3e-25
Identities = 17/38 (44%), Positives = 25/38 (65%)
Frame = -2
Query: 128 KTPRE**IGRKPSLFNLRIWSCSAHVLKGRTDKLEARS 15
KTP E G++PSL L+IW C +V + ++DKL +S
Sbjct: 622 KTPYEIWTGKRPSLSFLKIWGCEVYVKRLQSDKLTPKS 659
>gb|AAX94813.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza
sativa Japonica Group] gi|77550379|gb|ABA93176.1|
retrotransposon protein, putative, Ty1-copia subclass
[Oryza sativa Japonica Group]
Length = 938
Score = 73.6 bits (179), Expect(3) = 2e-23
Identities = 46/87 (52%), Positives = 54/87 (62%)
Frame = -1
Query: 393 KYIVSSIGSKEKYLSNEFIECLAQTGIMSQLSAPGTLQQNMVSERRNRILLGMVR*MTSY 214
KY+ S G + YLS EF L + GI+ QL+ PGT Q N VSERRNR LL MVR M S
Sbjct: 445 KYLRSDRGGE--YLSLEFGNHLKECGIVPQLTPPGTPQWNGVSERRNRTLLDMVRSMMSQ 502
Query: 213 SDLLSYLWRYVLITSIYLLNLVSSKSV 133
+DL W Y L T+ + LN V SKSV
Sbjct: 503 TDLPLSFWGYTLETAAFTLNRVPSKSV 529
Score = 54.3 bits (129), Expect(3) = 2e-23
Identities = 26/56 (46%), Positives = 37/56 (66%)
Frame = -2
Query: 533 AREGYLCYVTISDDYSRYEYTCLLRHKSGVFEVFKEIKAEAEKQLDRSI*SLRLDR 366
AR G+ ++T ++D+SRY Y L+RHKS FE FKE + E + L ++I LR DR
Sbjct: 396 ARGGFGYFITFTNDFSRYGYVYLMRHKSDSFEKFKEFQNEVQNHLGKTIKYLRSDR 451
Score = 28.1 bits (61), Expect(3) = 2e-23
Identities = 12/22 (54%), Positives = 15/22 (68%)
Frame = -2
Query: 128 KTPRE**IGRKPSLFNLRIWSC 63
KTP E G++PSL L+IW C
Sbjct: 531 KTPYEIWTGKRPSLSFLKIWGC 552
>gb|ABF97047.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1248
Score = 74.3 bits (181), Expect(3) = 4e-23
Identities = 45/87 (51%), Positives = 55/87 (63%)
Frame = -1
Query: 393 KYIVSSIGSKEKYLSNEFIECLAQTGIMSQLSAPGTLQQNMVSERRNRILLGMVR*MTSY 214
KY+ S G + YLS E+ L + GI+ QL+ PGT Q N VSERRNRILL MVR M S
Sbjct: 525 KYLRSDRGGE--YLSLEYGNHLKECGIVPQLTPPGTPQWNAVSERRNRILLDMVRSMMSQ 582
Query: 213 SDLLSYLWRYVLITSIYLLNLVSSKSV 133
+D+ W Y L T+ + LN V SKSV
Sbjct: 583 TDMPLSFWGYALETAAFTLNRVPSKSV 609
Score = 52.8 bits (125), Expect(3) = 4e-23
Identities = 25/56 (44%), Positives = 37/56 (66%)
Frame = -2
Query: 533 AREGYLCYVTISDDYSRYEYTCLLRHKSGVFEVFKEIKAEAEKQLDRSI*SLRLDR 366
AR G+ ++T +D++SRY Y L+RHKS FE F+E + E + L ++I LR DR
Sbjct: 476 ARGGFGYFITFTDEFSRYGYVYLMRHKSESFEKFQEFQNEVQNHLGKTIKYLRSDR 531
Score = 27.7 bits (60), Expect(3) = 4e-23
Identities = 12/22 (54%), Positives = 15/22 (68%)
Frame = -2
Query: 128 KTPRE**IGRKPSLFNLRIWSC 63
KTP E G++PSL L+IW C
Sbjct: 611 KTPYEIWTGKRPSLSFLKIWCC 632
>gb|AAP44605.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1161
Score = 74.3 bits (181), Expect(3) = 4e-23
Identities = 45/87 (51%), Positives = 55/87 (63%)
Frame = -1
Query: 393 KYIVSSIGSKEKYLSNEFIECLAQTGIMSQLSAPGTLQQNMVSERRNRILLGMVR*MTSY 214
KY+ S G + YLS E+ L + GI+ QL+ PGT Q N VSERRNRILL MVR M S
Sbjct: 438 KYLRSDRGGE--YLSLEYGNHLKECGIVPQLTPPGTPQWNAVSERRNRILLDMVRSMMSQ 495
Query: 213 SDLLSYLWRYVLITSIYLLNLVSSKSV 133
+D+ W Y L T+ + LN V SKSV
Sbjct: 496 TDMPLSFWGYALETAAFTLNRVPSKSV 522
Score = 52.8 bits (125), Expect(3) = 4e-23
Identities = 25/56 (44%), Positives = 37/56 (66%)
Frame = -2
Query: 533 AREGYLCYVTISDDYSRYEYTCLLRHKSGVFEVFKEIKAEAEKQLDRSI*SLRLDR 366
AR G+ ++T +D++SRY Y L+RHKS FE F+E + E + L ++I LR DR
Sbjct: 389 ARGGFGYFITFTDEFSRYGYVYLMRHKSESFEKFQEFQNEVQNHLGKTIKYLRSDR 444
Score = 27.7 bits (60), Expect(3) = 4e-23
Identities = 12/22 (54%), Positives = 15/22 (68%)
Frame = -2
Query: 128 KTPRE**IGRKPSLFNLRIWSC 63
KTP E G++PSL L+IW C
Sbjct: 524 KTPYEIWTGKRPSLSFLKIWCC 545
>gb|ADB85429.1| putative retrotransposon protein [Phyllostachys edulis]
Length = 1313
Score = 71.6 bits (174), Expect(2) = 8e-23
Identities = 42/76 (55%), Positives = 48/76 (63%)
Frame = -1
Query: 360 KYLSNEFIECLAQTGIMSQLSAPGTLQQNMVSERRNRILLGMVR*MTSYSDLLSYLWRYV 181
++LS EF L Q GI+ QL+ P T Q N VSER NR LL MVR M S SDL Y W Y
Sbjct: 657 EFLSQEFGNHLKQCGIVPQLTPPSTPQWNGVSERCNRTLLDMVRLMMSQSDLPLYFWGYA 716
Query: 180 LITSIYLLNLVSSKSV 133
L T+ + LN V SKSV
Sbjct: 717 LETAAFTLNRVPSKSV 732
Score = 62.0 bits (149), Expect(2) = 8e-23
Identities = 30/56 (53%), Positives = 39/56 (69%)
Frame = -2
Query: 533 AREGYLCYVTISDDYSRYEYTCLLRHKSGVFEVFKEIKAEAEKQLDRSI*SLRLDR 366
AR G+ ++T +DDYSRY Y L+RHKS FE FKE + E + QL ++I SLR DR
Sbjct: 599 ARGGFQYFITFTDDYSRYGYIYLMRHKSESFEKFKEFQNEVQNQLGKTIKSLRSDR 654
>ref|XP_010087941.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Morus
notabilis] gi|587840228|gb|EXB30863.1|
Retrovirus-related Pol polyprotein from transposon TNT
1-94 [Morus notabilis]
Length = 403
Score = 80.5 bits (197), Expect(2) = 8e-23
Identities = 39/77 (50%), Positives = 54/77 (70%)
Frame = -1
Query: 360 KYLSNEFIECLAQTGIMSQLSAPGTLQQNMVSERRNRILLGMVR*MTSYSDLLSYLWRYV 181
+YL EF + L + G++SQL+ PGT QQN ++ERRN+ LL ++R M SYS L + W Y
Sbjct: 156 EYLDQEFRDFLIEEGVVSQLTTPGTPQQNGIAERRNQTLLDIIRSMLSYSSLHTSFWDYA 215
Query: 180 LITSIYLLNLVSSKSVP 130
L T+ Y+LN V SKS+P
Sbjct: 216 LRTAAYILNRVPSKSIP 232
Score = 53.1 bits (126), Expect(2) = 8e-23
Identities = 24/40 (60%), Positives = 32/40 (80%)
Frame = -2
Query: 128 KTPRE**IGRKPSLFNLRIWSCSAHVLKGRTDKLEARSKL 9
KTP E G+KPSL ++RIW C AHVLKG+T+KLE +S++
Sbjct: 233 KTPLELWCGQKPSLRHVRIWGCPAHVLKGKTEKLEPKSEV 272
>gb|ABF97213.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1142
Score = 64.7 bits (156), Expect(3) = 4e-22
Identities = 43/87 (49%), Positives = 52/87 (59%)
Frame = -1
Query: 393 KYIVSSIGSKEKYLSNEFIECLAQTGIMSQLSAPGTLQQNMVSERRNRILLGMVR*MTSY 214
KY+ S G + YLS EF + GI+ QL+ PGT Q N VSERRNR LL MVR M S
Sbjct: 612 KYLRSDRGGE--YLSLEFGNHRKECGIVPQLTPPGTPQWNAVSERRNRTLLDMVRSMMSQ 669
Query: 213 SDLLSYLWRYVLITSIYLLNLVSSKSV 133
++L Y L T+ + LN V SKSV
Sbjct: 670 TNLPLSFSGYALETTAFTLNWVPSKSV 696
Score = 54.7 bits (130), Expect(3) = 4e-22
Identities = 26/56 (46%), Positives = 37/56 (66%)
Frame = -2
Query: 533 AREGYLCYVTISDDYSRYEYTCLLRHKSGVFEVFKEIKAEAEKQLDRSI*SLRLDR 366
AR G+ ++T +DD+S+Y Y L+RHKS FE FKE + E + L ++I LR DR
Sbjct: 563 ARGGFGYFITFTDDFSKYGYVYLMRHKSESFEKFKEFQNEVQNHLGKTIKYLRSDR 618
Score = 32.0 bits (71), Expect(3) = 4e-22
Identities = 16/38 (42%), Positives = 23/38 (60%)
Frame = -2
Query: 128 KTPRE**IGRKPSLFNLRIWSCSAHVLKGRTDKLEARS 15
KTP E G +PSL L+IW +V + ++DKL +S
Sbjct: 698 KTPYEIWTGNRPSLSFLKIWGYEVYVKRLQSDKLTPKS 735
>gb|ABF94883.1| transposon protein, putative, unclassified [Oryza sativa Japonica
Group]
Length = 1390
Score = 70.5 bits (171), Expect(3) = 1e-21
Identities = 39/71 (54%), Positives = 47/71 (66%)
Frame = -1
Query: 342 FIECLAQTGIMSQLSAPGTLQQNMVSERRNRILLGMVR*MTSYSDLLSYLWRYVLITSIY 163
F L + GI++Q S PG QQN V+ERRNR L+ MVR M SYS L LW L T+I+
Sbjct: 597 FARFLLENGIVAQYSTPGEPQQNGVAERRNRTLMDMVRSMMSYSTLPLGLWMEALKTAIH 656
Query: 162 LLNLVSSKSVP 130
+LN V SKSVP
Sbjct: 657 ILNRVPSKSVP 667
Score = 51.6 bits (122), Expect(3) = 1e-21
Identities = 25/58 (43%), Positives = 36/58 (62%)
Frame = -2
Query: 539 IKAREGYLCYVTISDDYSRYEYTCLLRHKSGVFEVFKEIKAEAEKQLDRSI*SLRLDR 366
+K+ +GY ++T +DDYSRY Y ++ +S + FK KAE E QLD I +R DR
Sbjct: 522 VKSVDGYDSFITFTDDYSRYGYIYPIKERSEAMDKFKIFKAEVENQLDIKIKVVRSDR 579
Score = 27.7 bits (60), Expect(3) = 1e-21
Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
Frame = -2
Query: 128 KTPRE**IGRKPSLFNLRIWS--CSAHVLKGRTDKLEARS 15
KTP E GR PSL +LR+W A V KL+ ++
Sbjct: 668 KTPYELWTGRVPSLTHLRVWGSPAEAKVFNPNIGKLDPKT 707
>emb|CAE03687.2| OSJNBb0026E15.5 [Oryza sativa Japonica Group]
Length = 448
Score = 69.7 bits (169), Expect(2) = 3e-21
Identities = 44/87 (50%), Positives = 53/87 (60%)
Frame = -1
Query: 393 KYIVSSIGSKEKYLSNEFIECLAQTGIMSQLSAPGTLQQNMVSERRNRILLGMVR*MTSY 214
KY+ S G + YL+ EF L + GI+ QL+ PG Q N VSERRNR LL MVR M S
Sbjct: 139 KYLRSDRGGE--YLTLEFGNHLKEGGIVPQLTPPGMPQWNGVSERRNRTLLDMVRSMMSQ 196
Query: 213 SDLLSYLWRYVLITSIYLLNLVSSKSV 133
+DL W Y L T ++ LN V SKSV
Sbjct: 197 TDLPLSFWCYTLETVVFTLNRVPSKSV 223
Score = 58.9 bits (141), Expect(2) = 3e-21
Identities = 28/56 (50%), Positives = 37/56 (66%)
Frame = -2
Query: 533 AREGYLCYVTISDDYSRYEYTCLLRHKSGVFEVFKEIKAEAEKQLDRSI*SLRLDR 366
AR G+ ++T +DD+SRY Y L+RHKS FE FKE E + LD++I LR DR
Sbjct: 90 ARGGFRYFITFTDDFSRYGYVYLMRHKSEYFEKFKEFHNEVQNHLDKTIKYLRSDR 145
>emb|CAE02960.2| OSJNBb0050N09.11 [Oryza sativa Japonica Group]
Length = 1405
Score = 70.5 bits (171), Expect(3) = 7e-21
Identities = 39/71 (54%), Positives = 47/71 (66%)
Frame = -1
Query: 342 FIECLAQTGIMSQLSAPGTLQQNMVSERRNRILLGMVR*MTSYSDLLSYLWRYVLITSIY 163
F L + GI++Q S PG QQN V+ERRNR L+ MVR M SYS L LW L T+I+
Sbjct: 602 FARFLLENGIVAQYSTPGEPQQNGVAERRNRTLMDMVRSMMSYSTLPLGLWMEALKTAIH 661
Query: 162 LLNLVSSKSVP 130
+LN V SKSVP
Sbjct: 662 ILNRVPSKSVP 672
Score = 48.9 bits (115), Expect(3) = 7e-21
Identities = 24/58 (41%), Positives = 35/58 (60%)
Frame = -2
Query: 539 IKAREGYLCYVTISDDYSRYEYTCLLRHKSGVFEVFKEIKAEAEKQLDRSI*SLRLDR 366
+K+ +GY ++T +DDYSRY Y ++ +S + FK KAE E Q D I +R DR
Sbjct: 527 VKSVDGYDSFITFTDDYSRYGYIYPIKERSEALDKFKIFKAEVENQHDIKIKVVRSDR 584
Score = 27.7 bits (60), Expect(3) = 7e-21
Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
Frame = -2
Query: 128 KTPRE**IGRKPSLFNLRIWS--CSAHVLKGRTDKLEARS 15
KTP E GR PSL +LR+W A V KL+ ++
Sbjct: 673 KTPYELWTGRVPSLTHLRVWGSPAEAKVFNPNIGKLDPKT 712
>emb|CAE04259.3| OSJNBa0089N06.20 [Oryza sativa Japonica Group]
Length = 1405
Score = 70.5 bits (171), Expect(3) = 7e-21
Identities = 39/71 (54%), Positives = 47/71 (66%)
Frame = -1
Query: 342 FIECLAQTGIMSQLSAPGTLQQNMVSERRNRILLGMVR*MTSYSDLLSYLWRYVLITSIY 163
F L + GI++Q S PG QQN V+ERRNR L+ MVR M SYS L LW L T+I+
Sbjct: 602 FARFLLENGIVAQYSTPGEPQQNGVAERRNRTLMDMVRSMMSYSTLPLGLWMEALKTAIH 661
Query: 162 LLNLVSSKSVP 130
+LN V SKSVP
Sbjct: 662 ILNRVPSKSVP 672
Score = 48.9 bits (115), Expect(3) = 7e-21
Identities = 24/58 (41%), Positives = 35/58 (60%)
Frame = -2
Query: 539 IKAREGYLCYVTISDDYSRYEYTCLLRHKSGVFEVFKEIKAEAEKQLDRSI*SLRLDR 366
+K+ +GY ++T +DDYSRY Y ++ +S + FK KAE E Q D I +R DR
Sbjct: 527 VKSVDGYDSFITFTDDYSRYGYIYPIKERSEALDKFKIFKAEVENQHDIKIKVVRSDR 584
Score = 27.7 bits (60), Expect(3) = 7e-21
Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
Frame = -2
Query: 128 KTPRE**IGRKPSLFNLRIWS--CSAHVLKGRTDKLEARS 15
KTP E GR PSL +LR+W A V KL+ ++
Sbjct: 673 KTPYELWTGRVPSLTHLRVWGSPAEAKVFNPNIGKLDPKT 712
>gb|ABF96044.1| transposon protein, putative, unclassified [Oryza sativa Japonica
Group]
Length = 1395
Score = 70.5 bits (171), Expect(3) = 7e-21
Identities = 39/71 (54%), Positives = 47/71 (66%)
Frame = -1
Query: 342 FIECLAQTGIMSQLSAPGTLQQNMVSERRNRILLGMVR*MTSYSDLLSYLWRYVLITSIY 163
F L + GI++Q S PG QQN V+ERRNR L+ MVR M SYS L LW L T+I+
Sbjct: 592 FARFLLENGIVAQYSTPGEPQQNGVAERRNRTLMDMVRSMMSYSTLPLGLWMEALKTAIH 651
Query: 162 LLNLVSSKSVP 130
+LN V SKSVP
Sbjct: 652 ILNRVPSKSVP 662
Score = 48.9 bits (115), Expect(3) = 7e-21
Identities = 24/58 (41%), Positives = 35/58 (60%)
Frame = -2
Query: 539 IKAREGYLCYVTISDDYSRYEYTCLLRHKSGVFEVFKEIKAEAEKQLDRSI*SLRLDR 366
+K+ +GY ++T +DDYSRY Y ++ +S + FK KAE E Q D I +R DR
Sbjct: 517 VKSVDGYDSFITFTDDYSRYGYIYPIKERSEALDKFKIFKAEVENQHDIKIKVVRSDR 574
Score = 27.7 bits (60), Expect(3) = 7e-21
Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
Frame = -2
Query: 128 KTPRE**IGRKPSLFNLRIWS--CSAHVLKGRTDKLEARS 15
KTP E GR PSL +LR+W A V KL+ ++
Sbjct: 663 KTPYELWTGRVPSLTHLRVWGSPAEAKVFNPNIGKLDPKT 702
>gb|AAT69633.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1358
Score = 70.5 bits (171), Expect(3) = 7e-21
Identities = 39/71 (54%), Positives = 47/71 (66%)
Frame = -1
Query: 342 FIECLAQTGIMSQLSAPGTLQQNMVSERRNRILLGMVR*MTSYSDLLSYLWRYVLITSIY 163
F L + GI++Q S PG QQN V+ERRNR L+ MVR M SYS L LW L T+I+
Sbjct: 555 FARFLLENGIVAQYSTPGEPQQNGVAERRNRTLMDMVRSMMSYSTLPLGLWMEALKTAIH 614
Query: 162 LLNLVSSKSVP 130
+LN V SKSVP
Sbjct: 615 ILNRVPSKSVP 625
Score = 48.9 bits (115), Expect(3) = 7e-21
Identities = 24/58 (41%), Positives = 35/58 (60%)
Frame = -2
Query: 539 IKAREGYLCYVTISDDYSRYEYTCLLRHKSGVFEVFKEIKAEAEKQLDRSI*SLRLDR 366
+K+ +GY ++T +DDYSRY Y ++ +S + FK KAE E Q D I +R DR
Sbjct: 480 VKSVDGYDSFITFTDDYSRYGYIYPIKERSEALDKFKIFKAEVENQHDIKIKVVRSDR 537
Score = 27.7 bits (60), Expect(3) = 7e-21
Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
Frame = -2
Query: 128 KTPRE**IGRKPSLFNLRIWS--CSAHVLKGRTDKLEARS 15
KTP E GR PSL +LR+W A V KL+ ++
Sbjct: 626 KTPYELWTGRVPSLTHLRVWGSPAEAKVFNPNIGKLDPKT 665