BLASTX nr result
ID: Ophiopogon21_contig00020171
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Ophiopogon21_contig00020171
(936 letters)
Database: ./nr
77,306,371 sequences; 28,104,191,420 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|ABO36622.1| copia LTR rider [Solanum lycopersicum] gi|1337118... 308 4e-81
ref|XP_008370919.1| PREDICTED: uncharacterized protein LOC103434... 307 9e-81
gb|AAT85194.1| putative polyprotein [Oryza sativa Japonica Group] 295 3e-77
gb|AAT44282.1| putative polyprotein [Oryza sativa Japonica Group] 290 1e-75
ref|XP_010692517.1| PREDICTED: uncharacterized protein LOC104905... 289 2e-75
emb|CAJ86192.1| H0306F03.15 [Oryza sativa Indica Group] 286 2e-74
emb|CAJ86151.1| H0413E07.4 [Oryza sativa Indica Group] 286 2e-74
gb|ABA97637.1| retrotransposon protein, putative, Ty1-copia subc... 286 2e-74
gb|AAX92941.1| retrotransposon protein, putative, Ty1-copia sub-... 285 3e-74
gb|AAR87163.1| putative polyprotein [Oryza sativa Japonica Group... 285 4e-74
gb|AAT44257.1| putative polyprotein [Oryza sativa Japonica Group] 278 3e-72
emb|CAE03834.3| OSJNBb0013J13.11 [Oryza sativa Japonica Group] 278 4e-72
gb|ACS74199.1| putative gag-pol polyprotein [Fragaria x ananassa] 277 7e-72
gb|AAL31093.1|AC091749_22 putative retrotransposon-related prote... 276 1e-71
sp|P10978.1|POLX_TOBAC RecName: Full=Retrovirus-related Pol poly... 265 4e-68
gb|AAW22873.1| putative polyprotein [Solanum lycopersicum] 264 9e-68
dbj|BAB09923.1| copia-like retrotransposable element [Arabidopsi... 261 6e-67
emb|CAJ09951.2| putative gag-pol polyprotein [Citrus sinensis] 260 9e-67
gb|AFB73911.1| polyprotein [Citrus sinensis] 260 1e-66
gb|AAV88069.1| hypothetical retrotransposon [Ipomoea batatas] 260 1e-66
>gb|ABO36622.1| copia LTR rider [Solanum lycopersicum] gi|133711819|gb|ABO36636.1|
copia LTR rider [Solanum lycopersicum]
Length = 1307
Score = 308 bits (789), Expect = 4e-81
Identities = 174/318 (54%), Positives = 215/318 (67%), Gaps = 10/318 (3%)
Frame = +1
Query: 1 VYAKKEG-SPKEGVRFKARLVAKGYAQLEGVDYNEAFSPVVKHSSIRIXXXXXXXXXXXX 177
V+ KKEG SP EGV++KAR+VA+G+ Q EGVDYNE FSPVV+H+SIR+
Sbjct: 840 VFKKKEGISPAEGVKYKARVVARGFNQREGVDYNEIFSPVVRHTSIRVLLAIVAHQNLEL 899
Query: 178 XXXXXKTAFLHDD-SDEIYMTQPTGFRVTGKEESVCKLKKSLYGQRQSLRQWYKRFDSFM 354
KTAFLH + +EIYMTQP GF+V GKE VCKLKKSLYG +QS RQWYKRFDS+M
Sbjct: 900 EQLDVKTAFLHGELEEEIYMTQPDGFQVPGKENHVCKLKKSLYGLKQSPRQWYKRFDSYM 959
Query: 355 FGKGYTRSLYDPCVYLHKLPGGEYIYL*LYVDDMLIVSKNSVAIAKLKGQLSD*FEVKDL 534
GYTRS YD CVY ++L +IYL LYVDDMLI +K I KLKG LS FE+KDL
Sbjct: 960 VKLGYTRSSYDCCVYYNRLNDDSFIYLVLYVDDMLIAAKKKYDIQKLKGLLSAEFEMKDL 1019
Query: 535 GEVRKILGMEIERERKRGRLCLTQKST*EKCFKS*ILIVMLKL*IFHWLPISS-SLQGCH 711
G RKILGMEI R+R+R +L L+Q+S +K V+ + + PI + S H
Sbjct: 1020 GAARKILGMEIIRDRERRKLFLSQRSYIQK--------VLARFGMSSSKPIDTPSAANIH 1071
Query: 712 -------HRY*KTVSMSYVPYANAVESLMYAVVCTQPNLSQAVSMVSRYMHDPGRGHWEA 870
+ MS VPYA+AV SLMYA+VCT+P+L+ AVS+VSR+M PGR HW+A
Sbjct: 1072 LTAMFAPQSEEEKEYMSRVPYASAVGSLMYAMVCTRPDLAHAVSVVSRFMGQPGREHWQA 1131
Query: 871 VKWILRYIKGTVDVGLVY 924
VK I RY++GT DVGL+Y
Sbjct: 1132 VKRIFRYLRGTSDVGLIY 1149
>ref|XP_008370919.1| PREDICTED: uncharacterized protein LOC103434364 [Malus domestica]
Length = 1100
Score = 307 bits (786), Expect = 9e-81
Identities = 173/316 (54%), Positives = 214/316 (67%), Gaps = 6/316 (1%)
Frame = +1
Query: 1 VYAKK-EGSPKEGVRFKARLVAKGYAQLEGVDYNEAFSPVVKHSSIRIXXXXXXXXXXXX 177
VYAKK E K+ VRFKARLVAKGYAQ EG++YNE + +
Sbjct: 20 VYAKKIESLGKDNVRFKARLVAKGYAQNEGINYNEFDLELAQ------------------ 61
Query: 178 XXXXXKTAFLHDD-SDEIYMTQPTGFRVTGKEESVCKLKKSLYGQRQSLRQWYKRFDSFM 354
KTAFLH D +EIYM+QP GF+V GK+ VCKL+KSLYG +QS RQWYKRFD FM
Sbjct: 62 --LDVKTAFLHGDLEEEIYMSQPEGFKVAGKKNWVCKLEKSLYGLKQSPRQWYKRFDEFM 119
Query: 355 FGKGYTRSLYDPCVYLHKLPGGEYIYL*LYVDDMLIVSKNSVAIAKLKGQLSD*FEVKDL 534
G+ YTRS YD CVY KL +IYL LYVDDMLI K+ V I +LK QLS+ FE+KDL
Sbjct: 120 IGQKYTRSHYDHCVYFRKLQDETFIYLLLYVDDMLITCKSKVEIERLKTQLSNEFEMKDL 179
Query: 535 GEVRKILGMEIERERKRGRLCLTQKST*EKCFKS*ILIVMLKL*IFHWLPISSSLQGCHH 714
GE RKILGMEIER+R +G++ L QK +K + + KL P++S +
Sbjct: 180 GEARKILGMEIERDRAKGKISLCQKQYLKKVLQRFRMNENSKL---VSTPLASHFKLSAS 236
Query: 715 RY*KTVS----MSYVPYANAVESLMYAVVCTQPNLSQAVSMVSRYMHDPGRGHWEAVKWI 882
KTV M+ +PYAN V SLMYA+VCT+P++SQAVS+VSRYMH+PG+GHW+AVKWI
Sbjct: 237 MSPKTVEESQYMAQIPYANVVGSLMYAMVCTRPDISQAVSIVSRYMHNPGKGHWQAVKWI 296
Query: 883 LRYIKGTVDVGLVYEK 930
LRYI GTVDVGL++++
Sbjct: 297 LRYILGTVDVGLLFQR 312
>gb|AAT85194.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1241
Score = 295 bits (755), Expect = 3e-77
Identities = 166/323 (51%), Positives = 211/323 (65%), Gaps = 11/323 (3%)
Frame = +1
Query: 1 VYAKKEG-SPKEGVRFKARLVAKGYAQLEGVDYNEAFSPVVKHSSIRIXXXXXXXXXXXX 177
++ +KEG SP + R+KARLVAKGY+Q+ G+D+N+ FSPVVKHSSIR
Sbjct: 774 IFKRKEGMSPSDEARYKARLVAKGYSQIPGIDFNDVFSPVVKHSSIRTLLSIVAMHDYEL 833
Query: 178 XXXXXKTAFLHDDSDE-IYMTQPTGFRVTGKEESVCKLKKSLYGQRQSLRQWYKRFDSFM 354
KTAFLH + +E IYM QP GF V GKE VC+LKKSLYG +QS RQWYKRFDSFM
Sbjct: 834 EQMDVKTAFLHGELEEDIYMEQPEGFVVPGKENLVCRLKKSLYGLKQSPRQWYKRFDSFM 893
Query: 355 FGKGYTRSLYDPCVYLHKLPGGEYIYL*LYVDDMLIVSKNSVAIAKLKGQLSD*FEVKDL 534
+ + RS YD CVYL K+ G IYL LYVDDMLI +K+ IAKLK QLS FE+KDL
Sbjct: 894 LSQKFRRSNYDSCVYL-KVVDGSAIYLLLYVDDMLIAAKDKSEIAKLKAQLSSEFEMKDL 952
Query: 535 GEVRKILGMEIERERKRGRLCLTQKST*EKCFKS*ILIVMLKL*IFHWLPISSSLQGCHH 714
G +KILGMEI RER G+L L+QK EK +L H + S+L H
Sbjct: 953 GAAKKILGMEITRERHSGKLYLSQKCYIEK---------VLHRFNMHDAKLVSTLLAAHF 1003
Query: 715 RY*KTVS---------MSYVPYANAVESLMYAVVCTQPNLSQAVSMVSRYMHDPGRGHWE 867
R + MS VPY++AV SLMYA+VC++P+LS A+S+VSRYM +PG+ HW+
Sbjct: 1004 RLSSDLCPQSAYDIEYMSRVPYSSAVSSLMYAMVCSRPDLSHALSVVSRYMANPGKEHWK 1063
Query: 868 AVKWILRYIKGTVDVGLVYEKAN 936
AV+WI RY++GT L + +++
Sbjct: 1064 AVQWIFRYLRGTSSACLQFGRSS 1086
>gb|AAT44282.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1243
Score = 290 bits (742), Expect = 1e-75
Identities = 164/322 (50%), Positives = 210/322 (65%), Gaps = 11/322 (3%)
Frame = +1
Query: 1 VYAKKEG-SPKEGVRFKARLVAKGYAQLEGVDYNEAFSPVVKHSSIRIXXXXXXXXXXXX 177
++ +KEG SP + R+KARLVAKGY+Q+ G+D+N+ FSPVVKHSSIR
Sbjct: 837 IFKRKEGMSPSDEARYKARLVAKGYSQIPGIDFNDVFSPVVKHSSIRTLLGIVAMHDYEL 896
Query: 178 XXXXXKTAFLHDDSDE-IYMTQPTGFRVTGKEESVCKLKKSLYGQRQSLRQWYKRFDSFM 354
KTAFLH + +E IYM QP GF V GKE VC+LKKSLYG +QS RQWYKRFDSFM
Sbjct: 897 EQMNVKTAFLHGELEEDIYMEQPEGFVVPGKENLVCRLKKSLYGLKQSPRQWYKRFDSFM 956
Query: 355 FGKGYTRSLYDPCVYLHKLPGGEYIYL*LYVDDMLIVSKNSVAIAKLKGQLSD*FEVKDL 534
+ + S YD CVYL K+ G IYL LYVDDMLI +K+ I KLK QLS FE+KDL
Sbjct: 957 LSQKFRISNYDSCVYL-KVVDGSVIYLLLYVDDMLIAAKDKSEIEKLKAQLSSEFEMKDL 1015
Query: 535 GEVRKILGMEIERERKRGRLCLTQKST*EKCFKS*ILIVMLKL*IFHWLPISSSLQGCHH 714
G +KILGMEI RER G+L L+QK EK V+ + + P+S+ L H
Sbjct: 1016 GAAKKILGMEITRERHSGKLYLSQKGYIEK--------VLRRFNMHDAKPVSTPL-AAHF 1066
Query: 715 RY*KTVS---------MSYVPYANAVESLMYAVVCTQPNLSQAVSMVSRYMHDPGRGHWE 867
R + MS VPY++AV SLMYA+VC +P+LS A+S+V+RYM +PG+ HW+
Sbjct: 1067 RLSSDLCPLSDYDIEYMSRVPYSSAVGSLMYAMVCCRPDLSHALSVVNRYMANPGKEHWK 1126
Query: 868 AVKWILRYIKGTVDVGLVYEKA 933
AV+WI RY++GT L +E++
Sbjct: 1127 AVQWIFRYLRGTSSACLQFERS 1148
>ref|XP_010692517.1| PREDICTED: uncharacterized protein LOC104905624 [Beta vulgaris subsp.
vulgaris]
Length = 2676
Score = 289 bits (740), Expect = 2e-75
Identities = 156/319 (48%), Positives = 213/319 (66%), Gaps = 11/319 (3%)
Frame = +1
Query: 1 VYAKKEGSPKEGVR-FKARLVAKGYAQLEGVDYNEAFSPVVKHSSIRIXXXXXXXXXXXX 177
VY +KEG+P G +KAR+VA+ + Q+EGVD++E F PVVKHSSIR+
Sbjct: 717 VYKRKEGTPDSGGPIYKARVVARRFTQVEGVDFHEVFPPVVKHSSIRVLLALEAMEDLEL 776
Query: 178 XXXXXKTAFLHDD-SDEIYMTQPTGFRVTGKEESVCKLKKSLYGQRQSLRQWYKRFDSFM 354
KTAFLH D +EIYM QP GF V GKEE VC+L KSLYG +QS RQWY+RFDSFM
Sbjct: 777 HQLDVKTAFLHGDLEEEIYMKQPKGFEVEGKEEHVCRLVKSLYGLKQSPRQWYRRFDSFM 836
Query: 355 FGKGYTRSLYDPCVYLHKLPGGEYIYL*LYVDDMLIVSKNSVAIAKLKGQLSD*FEVKDL 534
+TRS YD CVY +L G +IYL LYVDDML+ K+ + + LK L+ F++K+L
Sbjct: 837 LAHEFTRSSYDSCVYYKELVSGSFIYLLLYVDDMLVACKHLIEVNNLKKLLNSGFDMKNL 896
Query: 535 GEVRKILGMEIERERKRGRLCLTQKST*EKCFKS*ILIVMLKL*IFHWLPISSSLQGCHH 714
GE +KILGMEI R+R +G L L+Q+ EK V+ + + + P+S+ L G H
Sbjct: 897 GEAKKILGMEIWRDRSKGVLYLSQRRYIEK--------VLERFSMNNAKPVSTPL-GSHF 947
Query: 715 RY*KTV---------SMSYVPYANAVESLMYAVVCTQPNLSQAVSMVSRYMHDPGRGHWE 867
+ K + +M+++PY +AV S+MYA+VC++P+++QAVS++SRYM PG+GHWE
Sbjct: 948 KLSKELCPQSEEEERAMAHIPYTSAVGSVMYAMVCSRPDIAQAVSIMSRYMSRPGKGHWE 1007
Query: 868 AVKWILRYIKGTVDVGLVY 924
A+KW+LRY+KGT V L +
Sbjct: 1008 ALKWLLRYLKGTSHVCLEF 1026
>emb|CAJ86192.1| H0306F03.15 [Oryza sativa Indica Group]
Length = 1037
Score = 286 bits (732), Expect = 2e-74
Identities = 161/313 (51%), Positives = 204/313 (65%), Gaps = 2/313 (0%)
Frame = +1
Query: 1 VYAKKEG-SPKEGVRFKARLVAKGYAQLEGVDYNEAFSPVVKHSSIRIXXXXXXXXXXXX 177
++ +KEG SP + R+KARLVAKGY+Q+ G+D+N+ FSPVVKHSSIR
Sbjct: 623 IFKRKEGMSPSDEARYKARLVAKGYSQIPGIDFNDIFSPVVKHSSIRTLLSIVAMHDYEL 682
Query: 178 XXXXXKTAFLHDDSDE-IYMTQPTGFRVTGKEESVCKLKKSLYGQRQSLRQWYKRFDSFM 354
KTAFLH + +E IYM QP GF V GKE VC+LKKSLYG +QS RQWYKRFDSFM
Sbjct: 683 EQMDVKTAFLHGELEEDIYMEQPEGFVVPGKENLVCRLKKSLYGLKQSPRQWYKRFDSFM 742
Query: 355 FGKGYTRSLYDPCVYLHKLPGGEYIYL*LYVDDMLIVSKNSVAIAKLKGQLSD*FEVKDL 534
+ + RS YD CVYL K+ G IYL LYVDDMLI +K+ IAKLK QLS FE+KDL
Sbjct: 743 LSQKFRRSNYDSCVYL-KVVDGSAIYLLLYVDDMLIAAKDKSEIAKLKAQLSSEFEMKDL 801
Query: 535 GEVRKILGMEIERERKRGRLCLTQKST*EKCFKS*ILIVMLKL*IFHWLPISSSLQGCHH 714
G +KILGMEI RER +L L+QK EK V+ + + PI
Sbjct: 802 GAAKKILGMEITRERHSDKLYLSQKGYIEK--------VLRRFNMHDAKPI--------- 844
Query: 715 RY*KTVSMSYVPYANAVESLMYAVVCTQPNLSQAVSMVSRYMHDPGRGHWEAVKWILRYI 894
S YVPY++AV SLMYA++C++P+LS A+S+VSRYM +PG+ HW+AV+WI RY+
Sbjct: 845 ---YVHSQIYVPYSSAVGSLMYAMICSRPDLSHALSVVSRYMVNPGKEHWKAVQWIFRYL 901
Query: 895 KGTVDVGLVYEKA 933
GT L + ++
Sbjct: 902 HGTSSACLQFGRS 914
>emb|CAJ86151.1| H0413E07.4 [Oryza sativa Indica Group]
Length = 1205
Score = 286 bits (732), Expect = 2e-74
Identities = 161/313 (51%), Positives = 204/313 (65%), Gaps = 2/313 (0%)
Frame = +1
Query: 1 VYAKKEG-SPKEGVRFKARLVAKGYAQLEGVDYNEAFSPVVKHSSIRIXXXXXXXXXXXX 177
++ +KEG SP + R+KARLVAKGY+Q+ G+D+N+ FSPVVKHSSIR
Sbjct: 791 IFKRKEGMSPSDEARYKARLVAKGYSQIPGIDFNDIFSPVVKHSSIRTLLSIVAMHDYEL 850
Query: 178 XXXXXKTAFLHDDSDE-IYMTQPTGFRVTGKEESVCKLKKSLYGQRQSLRQWYKRFDSFM 354
KTAFLH + +E IYM QP GF V GKE VC+LKKSLYG +QS RQWYKRFDSFM
Sbjct: 851 EQMDVKTAFLHGELEEDIYMEQPEGFVVPGKENLVCRLKKSLYGLKQSPRQWYKRFDSFM 910
Query: 355 FGKGYTRSLYDPCVYLHKLPGGEYIYL*LYVDDMLIVSKNSVAIAKLKGQLSD*FEVKDL 534
+ + RS YD CVYL K+ G IYL LYVDDMLI +K+ IAKLK QLS FE+KDL
Sbjct: 911 LSQKFRRSNYDSCVYL-KVVDGSAIYLLLYVDDMLIAAKDKSEIAKLKAQLSSEFEMKDL 969
Query: 535 GEVRKILGMEIERERKRGRLCLTQKST*EKCFKS*ILIVMLKL*IFHWLPISSSLQGCHH 714
G +KILGMEI RER +L L+QK EK V+ + + PI
Sbjct: 970 GAAKKILGMEITRERHSDKLYLSQKGYIEK--------VLRRFNMHDAKPI--------- 1012
Query: 715 RY*KTVSMSYVPYANAVESLMYAVVCTQPNLSQAVSMVSRYMHDPGRGHWEAVKWILRYI 894
S YVPY++AV SLMYA++C++P+LS A+S+VSRYM +PG+ HW+AV+WI RY+
Sbjct: 1013 ---YVHSQIYVPYSSAVGSLMYAMICSRPDLSHALSVVSRYMVNPGKEHWKAVQWIFRYL 1069
Query: 895 KGTVDVGLVYEKA 933
GT L + ++
Sbjct: 1070 HGTSSACLQFGRS 1082
>gb|ABA97637.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1278
Score = 286 bits (731), Expect = 2e-74
Identities = 164/326 (50%), Positives = 211/326 (64%), Gaps = 14/326 (4%)
Frame = +1
Query: 1 VYAKKEG-SPKEGVRFKARLVAKGYAQLEGVDYNEAFSPVVKHSSIRIXXXXXXXXXXXX 177
++ +KEG SP E RFKARLVAKG++Q+ GVDYN+ FSPVVKHSSIR
Sbjct: 855 IFKRKEGLSPSEPPRFKARLVAKGFSQIVGVDYNDVFSPVVKHSSIRTFFSIVAMHDLEL 914
Query: 178 XXXXXKTAFLHDD-SDEIYMTQPTGFRVTGKEESVCKLKKSLYGQRQSLRQWYKRFDSFM 354
KTAFLH + +EIYM QP GF V GKE+ VCKLK+SLYG +QS RQWYKRFDSFM
Sbjct: 915 EQLDVKTAFLHGELEEEIYMDQPEGFIVPGKEDYVCKLKRSLYGLKQSPRQWYKRFDSFM 974
Query: 355 FGKGYTRSLYDPCVYLHKLPGGEYIYL*LYVDDMLIVSKNSVAIAKLKGQLSD*FEVKDL 534
G+ RS +D CVY+ K G IYL LYVDD+LI +K+ I LK QLS F++KDL
Sbjct: 975 LSHGFKRSEFDSCVYI-KFVNGSPIYLLLYVDDILIAAKSKEQITTLKKQLSSEFDMKDL 1033
Query: 535 GEVRKILGMEIERERKRGRLCLTQKST*EK---CFKS*ILIVMLKL*IFHWLPIS----- 690
G +KILGMEI R++ G L L+Q+S +K CF + P+S
Sbjct: 1034 GAAKKILGMEITRDKNSGLLFLSQQSYIKKVLQCFN-----------MHDAKPVSTPIAP 1082
Query: 691 ----SSLQGCHHRY*KTVSMSYVPYANAVESLMYAVVCTQPNLSQAVSMVSRYMHDPGRG 858
S+LQ C + MS VPY++AV SLMYA+VC++P+LS A+S+VSRYM +PG+
Sbjct: 1083 HFKLSALQ-CANTDEDVEYMSRVPYSSAVGSLMYAMVCSRPDLSHAMSLVSRYMTNPGKE 1141
Query: 859 HWEAVKWILRYIKGTVDVGLVYEKAN 936
HW+AV+WI RY++GT D L + + +
Sbjct: 1142 HWKAVQWIFRYLRGTADACLKFGRTD 1167
>gb|AAX92941.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza sativa
Japonica Group] gi|77548751|gb|ABA91548.1|
retrotransposon protein, putative, Ty1-copia subclass
[Oryza sativa Japonica Group]
Length = 2340
Score = 285 bits (730), Expect = 3e-74
Identities = 162/322 (50%), Positives = 210/322 (65%), Gaps = 11/322 (3%)
Frame = +1
Query: 1 VYAKKEG-SPKEGVRFKARLVAKGYAQLEGVDYNEAFSPVVKHSSIRIXXXXXXXXXXXX 177
++ +KEG S + R+KARL+AKGY+Q+ G+D+N+ FSPVVKHSSIR
Sbjct: 1072 IFKRKEGISSSDEARYKARLIAKGYSQIPGIDFNDVFSPVVKHSSIRTLLSIVAMHDYEL 1131
Query: 178 XXXXXKTAFLHDDSDE-IYMTQPTGFRVTGKEESVCKLKKSLYGQRQSLRQWYKRFDSFM 354
KTAFLH + +E IYM QP GF V GKE VC+LKKSLYG +QS RQWYKRFDSFM
Sbjct: 1132 EQMDVKTAFLHGELEEDIYMEQPKGFVVPGKENLVCRLKKSLYGLKQSPRQWYKRFDSFM 1191
Query: 355 FGKGYTRSLYDPCVYLHKLPGGEYIYL*LYVDDMLIVSKNSVAIAKLKGQLSD*FEVKDL 534
+ + RS YD CVYL K+ G IYL LYVDDMLI +K+ IAKLK QLS FE+KDL
Sbjct: 1192 LSQKFRRSNYDSCVYL-KVVDGSAIYLLLYVDDMLIAAKDKSEIAKLKAQLSSEFEMKDL 1250
Query: 535 GEVRKILGMEIERERKRGRLCLTQKST*EKCFKS*ILIVMLKL*IFHWLPISSSLQGCHH 714
G +KILGMEI R+R +L L+QK EK V+ + + P+S+ L H
Sbjct: 1251 GAAKKILGMEITRKRHSFKLYLSQKGYIEK--------VLRRFNMHDAKPVSTPL-AAHF 1301
Query: 715 RY*KTVS---------MSYVPYANAVESLMYAVVCTQPNLSQAVSMVSRYMHDPGRGHWE 867
R + MS VPY++AV SLMYA+VC++P+LS A+S+VSRYM +PG+ HW+
Sbjct: 1302 RLSSDLCPQSDYDIEYMSRVPYSSAVGSLMYAMVCSRPDLSHALSVVSRYMANPGKEHWK 1361
Query: 868 AVKWILRYIKGTVDVGLVYEKA 933
AV+WI RY++GT L + ++
Sbjct: 1362 AVQWIFRYLRGTSSACLQFGRS 1383
>gb|AAR87163.1| putative polyprotein [Oryza sativa Japonica Group]
gi|53370655|gb|AAU89150.1| integrase core domain
containing protein [Oryza sativa Japonica Group]
gi|108710286|gb|ABF98081.1| retrotransposon protein,
putative, Ty1-copia subclass [Oryza sativa Japonica
Group]
Length = 1322
Score = 285 bits (729), Expect = 4e-74
Identities = 163/319 (51%), Positives = 206/319 (64%), Gaps = 11/319 (3%)
Frame = +1
Query: 1 VYAKKEG-SPKEGVRFKARLVAKGYAQLEGVDYNEAFSPVVKHSSIRIXXXXXXXXXXXX 177
++ +KEG SP E RFK RLVAKG++Q+ GVDYN+ FSPVVKHSSIR
Sbjct: 855 IFKRKEGLSPSEPPRFKVRLVAKGFSQIAGVDYNDVFSPVVKHSSIRTFFSIVTMHDLEL 914
Query: 178 XXXXXKTAFLHDD-SDEIYMTQPTGFRVTGKEESVCKLKKSLYGQRQSLRQWYKRFDSFM 354
KT FLH + +EIYM QP GF V GKE+ VCKLK+SLYG +QS RQWYKRFDSFM
Sbjct: 915 EQLDVKTTFLHGELEEEIYMDQPEGFIVPGKEDYVCKLKRSLYGLKQSPRQWYKRFDSFM 974
Query: 355 FGKGYTRSLYDPCVYLHKLPGGEYIYL*LYVDDMLIVSKNSVAIAKLKGQLSD*FEVKDL 534
G+ RS +D CVY+ K G IYL LYVDDMLI +K+ I LK QLS F++KDL
Sbjct: 975 LSHGFKRSEFDSCVYI-KFVNGSPIYLLLYVDDMLIAAKSKEQITTLKKQLSSEFDMKDL 1033
Query: 535 GEVRKILGMEIERERKRGRLCLTQKST*EKCFKS*ILIVMLKL*IFHWLPIS-------- 690
G +KILGMEI R+R G L L+Q+S +K V+ + + P+S
Sbjct: 1034 GAAKKILGMEITRDRNSGLLFLSQQSYIKK--------VLQRFNMHDAKPVSTPIAPHFK 1085
Query: 691 -SSLQGCHHRY*KTVSMSYVPYANAVESLMYAVVCTQPNLSQAVSMVSRYMHDPGRGHWE 867
S+LQ C MS VPY++AV SLMYA+VC+ P+LS A+S+VSRYM +PG+ HW+
Sbjct: 1086 LSALQ-CASTDEDVEYMSRVPYSSAVGSLMYAMVCSWPDLSHAMSLVSRYMANPGKEHWK 1144
Query: 868 AVKWILRYIKGTVDVGLVY 924
AV+WI RY++GT D L +
Sbjct: 1145 AVQWIFRYLRGTADACLKF 1163
>gb|AAT44257.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1211
Score = 278 bits (712), Expect = 3e-72
Identities = 159/322 (49%), Positives = 207/322 (64%), Gaps = 11/322 (3%)
Frame = +1
Query: 1 VYAKKEG-SPKEGVRFKARLVAKGYAQLEGVDYNEAFSPVVKHSSIRIXXXXXXXXXXXX 177
++ +K+G SP + R+KARLVAKGY+Q+ G+D+N+ FSPV+KHSSIR
Sbjct: 744 IFKRKKGMSPSDEARYKARLVAKGYSQIPGIDFNDVFSPVLKHSSIRTLLSIVAVHDYEL 803
Query: 178 XXXXXKTAFLHDDSDE-IYMTQPTGFRVTGKEESVCKLKKSLYGQRQSLRQWYKRFDSFM 354
KTAFLH + +E IYM QP GF V GKE V +LKKSLYG +QS RQWYKRFDSFM
Sbjct: 804 EQMDVKTAFLHGELEEDIYMEQPEGFVVPGKENLVYRLKKSLYGLKQSPRQWYKRFDSFM 863
Query: 355 FGKGYTRSLYDPCVYLHKLPGGEYIYL*LYVDDMLIVSKNSVAIAKLKGQLSD*FEVKDL 534
F + + RS YD CVYL K+ G IYL LYVDDMLI +K+ I KLK QLS FE+KDL
Sbjct: 864 FSQKFRRSNYDSCVYL-KVVDGSSIYLLLYVDDMLIAAKDKSEIEKLKAQLSSEFEMKDL 922
Query: 535 GEVRKILGMEIERERKRGRLCLTQKST*EKCFKS*ILIVMLKL*IFHWLPISSSLQGCHH 714
G +KILGMEI RER G+L L+QK EK V+ + + P+S+ L H
Sbjct: 923 GAAKKILGMEITRERHSGKLYLSQKGYIEK--------VLRRFNMHDAKPVSTPL-AAHF 973
Query: 715 RY*KTVS---------MSYVPYANAVESLMYAVVCTQPNLSQAVSMVSRYMHDPGRGHWE 867
R + MS VPY + V SLMYA+VC++ +LS A+S+VSRYM +PG+ HW+
Sbjct: 974 RLSSDLCPQSDYDIEYMSRVPYLSVVGSLMYAMVCSRLDLSHALSVVSRYMANPGKEHWK 1033
Query: 868 AVKWILRYIKGTVDVGLVYEKA 933
V+WI +Y++GT L + ++
Sbjct: 1034 VVQWIFKYLRGTSSACLQFGRS 1055
>emb|CAE03834.3| OSJNBb0013J13.11 [Oryza sativa Japonica Group]
Length = 576
Score = 278 bits (711), Expect = 4e-72
Identities = 161/314 (51%), Positives = 202/314 (64%), Gaps = 11/314 (3%)
Frame = +1
Query: 1 VYAKKEG-SPKEGVRFKARLVAKGYAQLEGVDYNEAFSPVVKHSSIRIXXXXXXXXXXXX 177
++ +KEG SP E RFKARLVAKG++Q+ GVDYN+ FSPVVKHSSIR
Sbjct: 188 IFKRKEGLSPSEPPRFKARLVAKGFSQIAGVDYNDVFSPVVKHSSIRTFFSIVAMDDLEL 247
Query: 178 XXXXXKTAFLHDD-SDEIYMTQPTGFRVTGKEESVCKLKKSLYGQRQSLRQWYKRFDSFM 354
KT FLH + DEIYM QP GF V GKE+ VCKLK+SLYG +QS RQWYKRFDSFM
Sbjct: 248 KQLDVKTTFLHGELEDEIYMDQPEGFIVPGKEDYVCKLKRSLYGLKQSPRQWYKRFDSFM 307
Query: 355 FGKGYTRSLYDPCVYLHKLPGGEYIYL*LYVDDMLIVSKNSVAIAKLKGQLSD*FEVKDL 534
G+ S +D CVY+ K G IYL LYVDDMLI +K+ I LK QLS F++KDL
Sbjct: 308 LSHGFKWSEFDSCVYI-KFVNGSPIYLLLYVDDMLIAAKSKEQITTLKKQLSSEFDMKDL 366
Query: 535 GEVRKILGMEIERERKRGRLCLTQKST*EKCFKS*ILIVMLKL*IFHWLPIS-------- 690
G +KILGMEI R+ G L L+Q+S +K V+ + PIS
Sbjct: 367 GAAKKILGMEITRDINFGLLFLSQQSYIKK--------VLEHFNMHDAKPISTPIAAHFK 418
Query: 691 -SSLQGCHHRY*KTVSMSYVPYANAVESLMYAVVCTQPNLSQAVSMVSRYMHDPGRGHWE 867
S+LQ C MS VPY++AV SLMYA++C++P+LS A+S+VSRYM +PG+ HW+
Sbjct: 419 LSALQ-CASTDEDVGYMSRVPYSSAVGSLMYAMICSRPDLSHAMSLVSRYMANPGKEHWK 477
Query: 868 AVKWILRYIKGTVD 909
AV+W RY++GT D
Sbjct: 478 AVQWFFRYLRGTTD 491
>gb|ACS74199.1| putative gag-pol polyprotein [Fragaria x ananassa]
Length = 1297
Score = 277 bits (709), Expect = 7e-72
Identities = 150/314 (47%), Positives = 208/314 (66%), Gaps = 4/314 (1%)
Frame = +1
Query: 1 VYAKKEGSPKE-GVRFKARLVAKGYAQLEGVDYNEAFSPVVKHSSIRIXXXXXXXXXXXX 177
V+ KKEG ++ + +KARLVAKGY+Q EGVDY+E FSPVVKH+SIR+
Sbjct: 831 VFRKKEGIHEDDAITYKARLVAKGYSQKEGVDYDEIFSPVVKHTSIRLLLSIAAQYDMEI 890
Query: 178 XXXXXKTAFLHDDSDE-IYMTQPTGFRVTGKEESVCKLKKSLYGQRQSLRQWYKRFDSFM 354
KTAFLH D +E IYM+QP GF TGKE VC+LKKSLYG +QS RQWYK FD++M
Sbjct: 891 EQMDVKTAFLHGDLEEDIYMSQPEGFVETGKENLVCRLKKSLYGLKQSPRQWYKPFDTYM 950
Query: 355 FGKGYTRSLYDPCVYLHKLPGGEYIYL*LYVDDMLIVSKNSVAIAKLKGQLSD*FEVKDL 534
GYTR YD CVY H G+ I L LYVDDMLI ++ + I KLK +L F++KDL
Sbjct: 951 LKIGYTRCQYDCCVYYHVFEDGKVILLLLYVDDMLIACRDMLQIQKLKKKLGAEFDMKDL 1010
Query: 535 GEVRKILGMEIERERKRGRLCLTQKST*EKCFKS*IL--IVMLKL*IFHWLPISSSLQGC 708
G +KILG+EI R+R G++ L+Q+ K + + ++ + + +S+ +
Sbjct: 1011 GAAQKILGIEIRRDRNAGKIWLSQEKYIMKILERFNMAEAKVVSIPLAAHFRLSAEQRPS 1070
Query: 709 HHRY*KTVSMSYVPYANAVESLMYAVVCTQPNLSQAVSMVSRYMHDPGRGHWEAVKWILR 888
+ + M VPYA+AV LMYA++CT+P+L+QA+S+VS+YM +PG+ HWEAVKWI +
Sbjct: 1071 DQK--EIDMMKNVPYASAVGCLMYAMICTRPDLAQAMSVVSKYMSNPGKRHWEAVKWIFK 1128
Query: 889 YIKGTVDVGLVYEK 930
Y+K T +G+++E+
Sbjct: 1129 YLKNTRQLGIMFER 1142
>gb|AAL31093.1|AC091749_22 putative retrotransposon-related protein [Oryza sativa Japonica
Group] gi|22655747|gb|AAN04164.1| Putative
retrotransposon protein [Oryza sativa Japonica Group]
gi|31431214|gb|AAP53029.1| retrotransposon protein,
putative, Ty1-copia subclass, expressed [Oryza sativa
Japonica Group]
Length = 1229
Score = 276 bits (707), Expect = 1e-71
Identities = 160/323 (49%), Positives = 205/323 (63%), Gaps = 11/323 (3%)
Frame = +1
Query: 1 VYAKKEG-SPKEGVRFKARLVAKGYAQLEGVDYNEAFSPVVKHSSIRIXXXXXXXXXXXX 177
++ +KEG SP RF ARLVAKG++Q+ GVDYN+ FSPVVKHSSIR
Sbjct: 801 IFKRKEGLSPSGPPRFNARLVAKGFSQIAGVDYNDVFSPVVKHSSIRTFFCIVAMHDLEL 860
Query: 178 XXXXXKTAFLHDD-SDEIYMTQPTGFRVTGKEESVCKLKKSLYGQRQSLRQWYKRFDSFM 354
KT FLH + +EIYM QP GF V GKE+ VCKLK+SLYG +QS RQWYKRFDSFM
Sbjct: 861 EQLDVKTIFLHGELEEEIYMDQPEGFIVPGKEDDVCKLKRSLYGLKQSPRQWYKRFDSFM 920
Query: 355 FGKGYTRSLYDPCVYLHKLPGGEYIYL*LYVDDMLIVSKNSVAIAKLKGQLSD*FEVKDL 534
G+ RS +D CVY+ K G +IYL LYVDDMLI +K+ I LK QLS F++KDL
Sbjct: 921 LSHGFKRSEFDSCVYI-KFVNGSHIYLLLYVDDMLIAAKSKEQITTLKKQLSSEFDMKDL 979
Query: 535 GEVRKILGMEIERERKRGRLCLTQKST*EKCFKS*ILIVMLKL*IFHWLPIS-------- 690
+KILGMEI R+ G L L+Q+S +K V+ + I P+S
Sbjct: 980 VASKKILGMEITRDINSGLLFLSQQSYIKK--------VLQRFNIHDAKPVSTPIAPHFK 1031
Query: 691 -SSLQGCHHRY*KTVSMSYVPYANAVESLMYAVVCTQPNLSQAVSMVSRYMHDPGRGHWE 867
S+LQ C MS VPY++ V SLMYA+VC++P LS A+S+VSRYM +PG+ HW+
Sbjct: 1032 LSALQ-CTSTDEDVEYMSRVPYSSVVGSLMYAMVCSRPVLSHAMSLVSRYMANPGKEHWK 1090
Query: 868 AVKWILRYIKGTVDVGLVYEKAN 936
AV+WI RY++GT D L + + +
Sbjct: 1091 AVQWIFRYLRGTADACLKFGRTD 1113
>sp|P10978.1|POLX_TOBAC RecName: Full=Retrovirus-related Pol polyprotein from transposon TNT
1-94; Includes: RecName: Full=Protease; Includes:
RecName: Full=Reverse transcriptase; Includes: RecName:
Full=Endonuclease gi|20045|emb|CAA32025.1| unnamed
protein product [Nicotiana tabacum]
Length = 1328
Score = 265 bits (677), Expect = 4e-68
Identities = 147/307 (47%), Positives = 198/307 (64%), Gaps = 9/307 (2%)
Frame = +1
Query: 10 KKEGSPKEGVRFKARLVAKGYAQLEGVDYNEAFSPVVKHSSIRIXXXXXXXXXXXXXXXX 189
KK+G K VR+KARLV KG+ Q +G+D++E FSPVVK +SIR
Sbjct: 864 KKDGDCKL-VRYKARLVVKGFEQKKGIDFDEIFSPVVKMTSIRTILSLAASLDLEVEQLD 922
Query: 190 XKTAFLHDD-SDEIYMTQPTGFRVTGKEESVCKLKKSLYGQRQSLRQWYKRFDSFMFGKG 366
KTAFLH D +EIYM QP GF V GK+ VCKL KSLYG +Q+ RQWY +FDSFM +
Sbjct: 923 VKTAFLHGDLEEEIYMEQPEGFEVAGKKHMVCKLNKSLYGLKQAPRQWYMKFDSFMKSQT 982
Query: 367 YTRSLYDPCVYLHKLPGGEYIYL*LYVDDMLIVSKNSVAIAKLKGQLSD*FEVKDLGEVR 546
Y ++ DPCVY + +I L LYVDDMLIV K+ IAKLKG LS F++KDLG +
Sbjct: 983 YLKTYSDPCVYFKRFSENNFIILLLYVDDMLIVGKDKGLIAKLKGDLSKSFDMKDLGPAQ 1042
Query: 547 KILGMEIERERKRGRLCLTQKST*EKCFKS*ILIVMLKL*IFHWLPISSSLQG------- 705
+ILGM+I RER +L L+Q+ E+ V+ + + + P+S+ L G
Sbjct: 1043 QILGMKIVRERTSRKLWLSQEKYIER--------VLERFNMKNAKPVSTPLAGHLKLSKK 1094
Query: 706 -CHHRY*KTVSMSYVPYANAVESLMYAVVCTQPNLSQAVSMVSRYMHDPGRGHWEAVKWI 882
C + +M+ VPY++AV SLMYA+VCT+P+++ AV +VSR++ +PG+ HWEAVKWI
Sbjct: 1095 MCPTTVEEKGNMAKVPYSSAVGSLMYAMVCTRPDIAHAVGVVSRFLENPGKEHWEAVKWI 1154
Query: 883 LRYIKGT 903
LRY++GT
Sbjct: 1155 LRYLRGT 1161
>gb|AAW22873.1| putative polyprotein [Solanum lycopersicum]
Length = 687
Score = 264 bits (674), Expect = 9e-68
Identities = 146/314 (46%), Positives = 201/314 (64%), Gaps = 9/314 (2%)
Frame = +1
Query: 10 KKEGSPKEGVRFKARLVAKGYAQLEGVDYNEAFSPVVKHSSIRIXXXXXXXXXXXXXXXX 189
KK+G+ V+ KARLV KG Q +G+D++E F+PVVK +SIR+
Sbjct: 225 KKDGNKL--VKRKARLVVKGCHQKKGIDFDEIFAPVVKMTSIRMILGLATCLNLELEQLD 282
Query: 190 XKTAFLHDD-SDEIYMTQPTGFRVTGKEESVCKLKKSLYGQRQSLRQWYKRFDSFMFGKG 366
KTAFLH D +EIYM QP GF V GKE VCKLKKSLYG +Q+ RQWY +FDSFM
Sbjct: 283 VKTAFLHGDLHEEIYMEQPEGFEVKGKENFVCKLKKSLYGLKQAPRQWYHKFDSFMSNNE 342
Query: 367 YTRSLYDPCVYLHKLPGGEYIYL*LYVDDMLIVSKNSVAIAKLKGQLSD*FEVKDLGEVR 546
Y R+ DPCVY K G +I L LYVDDMLIV ++ I +LK LS F++KDLG +
Sbjct: 343 YKRTTADPCVYFRKFSEGNFIILCLYVDDMLIVGQDVEMICRLKEDLSKSFDMKDLGPAK 402
Query: 547 KILGMEIERERKRGRLCLTQKST*EKCFKS*ILIVMLKL*IFHWLPISSSLQG------- 705
+ILGMEI R+RK G+L L+Q++ E+ V+ + + + P+++ L
Sbjct: 403 QILGMEIARDRKAGKLWLSQENYIER--------VLERFNMKNAKPVNTPLAAHFKLSKR 454
Query: 706 -CHHRY*KTVSMSYVPYANAVESLMYAVVCTQPNLSQAVSMVSRYMHDPGRGHWEAVKWI 882
C + SMS++PY++ V SLMYA+VCT+P+++ AV +VSRY+ +P + HWEAVKWI
Sbjct: 455 CCPTTEKEKESMSHIPYSSVVGSLMYAMVCTRPDIAHAVGLVSRYLANPSKVHWEAVKWI 514
Query: 883 LRYIKGTVDVGLVY 924
LRY++GT ++ L +
Sbjct: 515 LRYLRGTSNLSLCF 528
>dbj|BAB09923.1| copia-like retrotransposable element [Arabidopsis thaliana]
Length = 1342
Score = 261 bits (667), Expect = 6e-67
Identities = 151/321 (47%), Positives = 197/321 (61%), Gaps = 11/321 (3%)
Frame = +1
Query: 1 VYAKKEGSPK-EGVRFKARLVAKGYAQLEGVDYNEAFSPVVKHSSIRIXXXXXXXXXXXX 177
++ +K G P E R+KARLVAKG++Q EG+DY E FSPVVKH SIR
Sbjct: 872 IFKRKAGIPGVEPPRYKARLVAKGFSQREGIDYQEIFSPVVKHVSIRYLLSIVVQFDMEL 931
Query: 178 XXXXXKTAFLHDDSDE-IYMTQPTGFRVTGKEESVCKLKKSLYGQRQSLRQWYKRFDSFM 354
KTAFLH + DE I M+QP G+ E VC LKKSLYG +QS RQW +RFDSFM
Sbjct: 932 EQLDVKTAFLHGNLDEYILMSQPEGYEDEDSTEKVCLLKKSLYGLKQSPRQWNQRFDSFM 991
Query: 355 FGKGYTRSLYDPCVYLHKLPGGEYIYL*LYVDDMLIVSKNSVAIAKLKGQLSD*FEVKDL 534
GY RS Y+PCVY +L G YIYL LYVDDMLI S+N I KLK L+ FE+KDL
Sbjct: 992 INSGYQRSKYNPCVYTQQLNDGSYIYLLLYVDDMLIASQNKDQIQKLKESLNREFEMKDL 1051
Query: 535 GEVRKILGMEIERERKRGRLCLTQKST*EKCFKS*ILIVMLKL*IFHWLPISSSLQGCHH 714
G RKILGMEI R R++G L L+Q S + +L+ +S + G H
Sbjct: 1052 GPARKILGMEITRNREQGILDLSQ---------SEYVAGVLRAFGMDQSKVSQTPLGAHF 1102
Query: 715 RY----*KTVS-----MSYVPYANAVESLMYAVVCTQPNLSQAVSMVSRYMHDPGRGHWE 867
+ KT++ M VPY NA+ S+MY+++ ++P+L+ V +VSR+M P + HW+
Sbjct: 1103 KLRAANEKTLARDAEYMKLVPYPNAIGSIMYSMIGSRPDLAYPVGVVSRFMSKPSKEHWQ 1162
Query: 868 AVKWILRYIKGTVDVGLVYEK 930
AVKW++RY+KGT D L ++K
Sbjct: 1163 AVKWVMRYMKGTQDTCLRFKK 1183
>emb|CAJ09951.2| putative gag-pol polyprotein [Citrus sinensis]
Length = 1334
Score = 260 bits (665), Expect = 9e-67
Identities = 152/317 (47%), Positives = 191/317 (60%), Gaps = 7/317 (2%)
Frame = +1
Query: 1 VYAKKEGSPK-EGVRFKARLVAKGYAQLEGVDYNEAFSPVVKHSSIRIXXXXXXXXXXXX 177
++ + EG P E ++KARLVA+G+ Q EGVD+NE FSPVVKHSSIRI
Sbjct: 863 IFKRNEGIPDVEPPKYKARLVARGFTQREGVDFNEIFSPVVKHSSIRILLAMVALLDLEL 922
Query: 178 XXXXXKTAFLHDDSDE-IYMTQPTGFRVTGKEESVCKLKKSLYGQRQSLRQWYKRFDSFM 354
KTAFLH + +E I M QP GF KE+ VC L KSLYG +QS RQWY+RFD FM
Sbjct: 923 EQMDVKTAFLHGNLEEQILMAQPEGFECKDKEDYVCLLHKSLYGLKQSPRQWYRRFDDFM 982
Query: 355 FGKGYTRSLYDPCVYLHKLPGGEYIYL*LYVDDMLIVSKNSVAIAKLKGQLSD*FEVKDL 534
KGY RS YD CVY G YL LYVDDMLI SK I +LK L FE+KDL
Sbjct: 983 VSKGYRRSRYDSCVYFGGSDQGGVAYLLLYVDDMLIASKYKSEIERLKNLLKAEFEMKDL 1042
Query: 535 GEVRKILGMEIERERKRGRLCLTQKST*EKCFKS*ILIVMLKL*IFHWLPISSSLQGCHH 714
G ++ILGM+I R+R G L L+Q +K V+ + + P+ + L
Sbjct: 1043 GNAKRILGMDIIRDRSAGTLFLSQGKYIKK--------VLERFEMQDCKPVQTPLGPQFK 1094
Query: 715 RY*KTVS-----MSYVPYANAVESLMYAVVCTQPNLSQAVSMVSRYMHDPGRGHWEAVKW 879
T S M+ PYA AV SLMYA+VCT+ +++ AVS+VSRY+ PG+ HW AVKW
Sbjct: 1095 LSAATTSEDESQMNEFPYAQAVGSLMYAMVCTRSDIAYAVSVVSRYLSCPGKVHWNAVKW 1154
Query: 880 ILRYIKGTVDVGLVYEK 930
I+RY+KG+ GL+Y K
Sbjct: 1155 IMRYLKGSSTCGLLYGK 1171
>gb|AFB73911.1| polyprotein [Citrus sinensis]
Length = 1309
Score = 260 bits (664), Expect = 1e-66
Identities = 146/311 (46%), Positives = 191/311 (61%), Gaps = 3/311 (0%)
Frame = +1
Query: 1 VYAKKEGSPKEGVRFKARLVAKGYAQLEGVDYNEAFSPVVKHSSIRIXXXXXXXXXXXXX 180
VY K + R++ARLV KGYAQ EG+D+NE FSPVV+ +++RI
Sbjct: 841 VYKIKRDGNDQVERYRARLVVKGYAQKEGIDFNEIFSPVVRLTTVRIVLAMCATFDLHLE 900
Query: 181 XXXXKTAFLHDD-SDEIYMTQPTGFRVTGKEESVCKLKKSLYGQRQSLRQWYKRFDSFMF 357
KTAFLH + +EIYM QP GF TGKE VC+L KSLYG +Q+ R WYKRFDSF+
Sbjct: 901 QLDVKTAFLHGELEEEIYMLQPEGFAETGKENLVCRLNKSLYGLKQAPRYWYKRFDSFIM 960
Query: 358 GKGYTRSLYDPCVYLHKLPGGEYIYL*LYVDDMLIVSKNSVAIAKLKGQLSD*FEVKDLG 537
GY R D C Y + ++I L LYVDDML+ N I +LK QL+ FE+KDLG
Sbjct: 961 SLGYNRLSSDHCAYYKRFEDNDFIILLLYVDDMLVAGPNKDRIQELKAQLAREFEMKDLG 1020
Query: 538 EVRKILGMEIERERKRGRLCLTQKST*EKCFKS*ILIVMLKL*IFHWLPISSSLQG--CH 711
KILGM+I R+R ++ L+QK+ +K + + I LP++ L C
Sbjct: 1021 PANKILGMQIHRDRNNMKIWLSQKNYLKKILRRFNMQDCKS--ISTSLPVNFKLSSSMCP 1078
Query: 712 HRY*KTVSMSYVPYANAVESLMYAVVCTQPNLSQAVSMVSRYMHDPGRGHWEAVKWILRY 891
+ MS VPYA+AV SLM+A++CT+P+++QAV +VSRYM +PG HW AVK ILRY
Sbjct: 1079 SNEAERKEMSRVPYASAVGSLMFAMICTRPDIAQAVGVVSRYMANPGGEHWIAVKRILRY 1138
Query: 892 IKGTVDVGLVY 924
I+GT DV L Y
Sbjct: 1139 IRGTSDVALCY 1149
>gb|AAV88069.1| hypothetical retrotransposon [Ipomoea batatas]
Length = 1415
Score = 260 bits (664), Expect = 1e-66
Identities = 142/317 (44%), Positives = 201/317 (63%), Gaps = 9/317 (2%)
Frame = +1
Query: 1 VYAKKEGSPKEGVRFKARLVAKGYAQLEGVDYNEAFSPVVKHSSIRIXXXXXXXXXXXXX 180
VY K RFKARLV KG++Q +G+D++E FSPVVK SSIR+
Sbjct: 858 VYRVKHEEGTSVPRFKARLVVKGFSQKKGIDFDEIFSPVVKFSSIRVVLGLAARLDIEIE 917
Query: 181 XXXXKTAFLHDDSDE-IYMTQPTGFRVTGKEESVCKLKKSLYGQRQSLRQWYKRFDSFMF 357
KTAFLH D DE IYM QP GF+V GKE+ VC+LKKSLYG +Q+ RQWYK+F S M
Sbjct: 918 QMDVKTAFLHGDLDEEIYMEQPEGFKVKGKEDYVCRLKKSLYGLKQAPRQWYKKFTSVMS 977
Query: 358 GKGYTRSLYDPCVYLHKLPGGEYIYL*LYVDDMLIVSKNSVAIAKLKGQLSD*FEVKDLG 537
GY ++ D CV++++ +++ L LYVDDMLIV +N+ I +LK +LS F +KD+G
Sbjct: 978 KHGYKKTSSDHCVFVNRYSDDDFVILLLYVDDMLIVGRNASRIQELKQELSKSFSMKDMG 1037
Query: 538 EVRKILGMEIERERKRGRLCLTQKST*EKCFKS*ILIVMLKL*IFHWLPISSSL------ 699
++ILGM+I R+R+ +L L+Q+ EK V+ + + P+S+ L
Sbjct: 1038 PAKQILGMKIIRDRQNKKLWLSQEKYIEK--------VLERFHMNEAKPVSTPLDMHFKL 1089
Query: 700 --QGCHHRY*KTVSMSYVPYANAVESLMYAVVCTQPNLSQAVSMVSRYMHDPGRGHWEAV 873
+ C + M VPY++AV SLMYA+VCT+P+++ AV +VSR++ +PGR HW+AV
Sbjct: 1090 CKKQCPSSEKEKEEMQRVPYSSAVGSLMYAMVCTRPDIAHAVGVVSRFLSNPGREHWDAV 1149
Query: 874 KWILRYIKGTVDVGLVY 924
KWILRY++GT + L +
Sbjct: 1150 KWILRYLRGTSSLSLCF 1166