BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Ophiopogon21_contig00019889
         (910 letters)

Database: ./nr 
           77,306,371 sequences; 28,104,191,420 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AEF12551.1| gag protein [Caprine arthritis encephalitis virus]      60   3e-06
gb|AEF12565.1| gag protein [Caprine arthritis encephalitis virus]      59   5e-06
emb|CCA29195.1| gag-pol polyprotein [Small ruminant lentivirus]        59   5e-06
gb|AEF12567.1| gag protein [Caprine arthritis encephalitis virus]      59   7e-06
emb|CBX25124.2| gag-pol polyprotein [Small ruminant lentivirus]        59   7e-06
emb|CBX25122.2| gag-pol polyprotein [Small ruminant lentivirus]        59   7e-06
emb|CBX25121.2| gag-pol polyprotein [Small ruminant lentivirus]        59   7e-06
emb|CCA29194.1| gag-pol polyprotein [Small ruminant lentivirus]        59   7e-06
emb|CCA29197.1| gag-pol polyprotein [Small ruminant lentivirus]        58   9e-06

>gb|AEF12551.1| gag protein [Caprine arthritis encephalitis virus]
          Length = 441

 Score = 59.7 bits (143), Expect = 3e-06
 Identities = 21/40 (52%), Positives = 28/40 (70%)
 Frame = +3

Query: 285 CYRCGDRGHMAQQCRNGVLCNNCRRIGHYASTCRSPPRHP 404
           CY CG  GH+A+QCRNG++C+NC + GH    CRS  + P
Sbjct: 383 CYNCGKEGHLARQCRNGIICHNCGKRGHIQKNCRSKKQGP 422


>gb|AEF12565.1| gag protein [Caprine arthritis encephalitis virus]
          Length = 231

 Score = 58.9 bits (141), Expect = 5e-06
 Identities = 21/35 (60%), Positives = 26/35 (74%)
 Frame = +3

Query: 285 CYRCGDRGHMAQQCRNGVLCNNCRRIGHYASTCRS 389
           CY CG  GH+A+QCRNG++C+NC R GH    CRS
Sbjct: 195 CYNCGKEGHLAKQCRNGIICHNCGRRGHIQKDCRS 229


>emb|CCA29195.1| gag-pol polyprotein [Small ruminant lentivirus]
          Length = 217

 Score = 58.9 bits (141), Expect = 5e-06
 Identities = 26/51 (50%), Positives = 31/51 (60%)
 Frame = +3

Query: 234 PQKSPSSHPFFHPTKIFCYRCGDRGHMAQQCRNGVLCNNCRRIGHYASTCR 386
           PQK     P F   K  CY CG  GH+A+QCRNG++C+NC R GH    CR
Sbjct: 168 PQK-----PQFKGGKQKCYNCGKEGHIARQCRNGIICHNCGRRGHIQKECR 213


>gb|AEF12567.1| gag protein [Caprine arthritis encephalitis virus]
          Length = 255

 Score = 58.5 bits (140), Expect = 7e-06
 Identities = 21/38 (55%), Positives = 28/38 (73%)
 Frame = +3

Query: 276 KIFCYRCGDRGHMAQQCRNGVLCNNCRRIGHYASTCRS 389
           K+ CY CG  GH+A+QCRNG++C+NC + GH    CRS
Sbjct: 209 KLKCYNCGKEGHIAKQCRNGIICHNCGKRGHIQKGCRS 246


>emb|CBX25124.2| gag-pol polyprotein [Small ruminant lentivirus]
          Length = 217

 Score = 58.5 bits (140), Expect = 7e-06
 Identities = 21/35 (60%), Positives = 26/35 (74%)
 Frame = +3

Query: 285 CYRCGDRGHMAQQCRNGVLCNNCRRIGHYASTCRS 389
           CY CG  GH+A+QCRNG++C+NC R GH    CRS
Sbjct: 180 CYNCGKEGHIAKQCRNGIICHNCGRRGHIQKDCRS 214


>emb|CBX25122.2| gag-pol polyprotein [Small ruminant lentivirus]
          Length = 217

 Score = 58.5 bits (140), Expect = 7e-06
 Identities = 21/35 (60%), Positives = 26/35 (74%)
 Frame = +3

Query: 285 CYRCGDRGHMAQQCRNGVLCNNCRRIGHYASTCRS 389
           CY CG  GH+A+QCRNG++C+NC R GH    CRS
Sbjct: 180 CYNCGKAGHLARQCRNGIICHNCGRRGHIQKDCRS 214


>emb|CBX25121.2| gag-pol polyprotein [Small ruminant lentivirus]
          Length = 217

 Score = 58.5 bits (140), Expect = 7e-06
 Identities = 21/35 (60%), Positives = 26/35 (74%)
 Frame = +3

Query: 285 CYRCGDRGHMAQQCRNGVLCNNCRRIGHYASTCRS 389
           CY CG  GH+A+QCRNG++C+NC R GH    CRS
Sbjct: 180 CYNCGKAGHLARQCRNGIICHNCGRRGHIQKDCRS 214


>emb|CCA29194.1| gag-pol polyprotein [Small ruminant lentivirus]
          Length = 217

 Score = 58.5 bits (140), Expect = 7e-06
 Identities = 21/35 (60%), Positives = 26/35 (74%)
 Frame = +3

Query: 285 CYRCGDRGHMAQQCRNGVLCNNCRRIGHYASTCRS 389
           CY CG  GH+A+QCRNGV+C+NC R GH    CR+
Sbjct: 180 CYNCGKEGHLARQCRNGVICHNCGRRGHIQKNCRN 214


>emb|CCA29197.1| gag-pol polyprotein [Small ruminant lentivirus]
          Length = 217

 Score = 58.2 bits (139), Expect = 9e-06
 Identities = 20/35 (57%), Positives = 26/35 (74%)
 Frame = +3

Query: 285 CYRCGDRGHMAQQCRNGVLCNNCRRIGHYASTCRS 389
           CY CG  GHMA+QCRNG++C+NC + GH    CR+
Sbjct: 180 CYNCGKEGHMARQCRNGIICHNCGKRGHIQKNCRN 214