BLASTX nr result

ID: Ophiopogon21_contig00018288 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Ophiopogon21_contig00018288
         (401 letters)

Database: ./nr 
           77,306,371 sequences; 28,104,191,420 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_010919096.1| PREDICTED: E3 ubiquitin-protein ligase RHA1B...    59   1e-06

>ref|XP_010919096.1| PREDICTED: E3 ubiquitin-protein ligase RHA1B [Elaeis guineensis]
          Length = 192

 Score = 58.9 bits (141), Expect = 1e-06
 Identities = 33/72 (45%), Positives = 36/72 (50%), Gaps = 5/72 (6%)
 Frame = -1

Query: 203 MGFPLGYSEXXXXXXXXXXXXXXXXXXXLISWAFNFAGLGDLLDSDAPW---PDPTNHPN 33
           MGFP+GYSE                   LISW F   GLGDLLDSD PW   P P  H  
Sbjct: 1   MGFPVGYSELLLPKLLLHTVFLLGFVRRLISWVFTAVGLGDLLDSDIPWSDPPPPNGHSQ 60

Query: 32  HHK--VQSVSAM 3
           HH+   +S SAM
Sbjct: 61  HHRPEFRSASAM 72


Top