BLASTX nr result
ID: Ophiopogon21_contig00017223
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Ophiopogon21_contig00017223
(727 letters)
Database: ./nr
77,306,371 sequences; 28,104,191,420 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|ABA98804.1| retrotransposon protein, putative, Ty1-copia subc... 186 3e-64
gb|ABA98656.1| retrotransposon protein, putative, Ty1-copia subc... 186 2e-63
gb|AAK70406.1|AF369930_1 pol polyprotein [Citrus x paradisi] 189 2e-63
emb|CAH66122.1| OSIGBa0146N20.7 [Oryza sativa Indica Group] 184 4e-63
gb|ACS74199.1| putative gag-pol polyprotein [Fragaria x ananassa] 190 2e-62
gb|ABO36622.1| copia LTR rider [Solanum lycopersicum] gi|1337118... 181 1e-60
emb|CAN61630.1| hypothetical protein VITISV_003191 [Vitis vinifera] 177 1e-60
gb|ABA91380.1| retrotransposon protein, putative, Ty1-copia subc... 172 2e-60
emb|CAD41912.2| OSJNBa0033G05.13 [Oryza sativa Japonica Group] 176 3e-60
emb|CAH66031.1| H0515C11.7 [Oryza sativa Indica Group] 179 4e-60
gb|KOM47916.1| hypothetical protein LR48_Vigan07g162000 [Vigna a... 179 4e-60
sp|P10978.1|POLX_TOBAC RecName: Full=Retrovirus-related Pol poly... 174 5e-60
gb|AAT44257.1| putative polyprotein [Oryza sativa Japonica Group] 175 5e-60
gb|AAX92941.1| retrotransposon protein, putative, Ty1-copia sub-... 173 9e-60
gb|AAR87163.1| putative polyprotein [Oryza sativa Japonica Group... 176 9e-60
ref|XP_010676254.1| PREDICTED: uncharacterized protein LOC104892... 178 1e-59
gb|AAT85194.1| putative polyprotein [Oryza sativa Japonica Group] 174 2e-59
gb|AAT01387.1| putative polyprotein [Oryza sativa Japonica Group... 173 6e-58
gb|AFB73912.1| polyprotein [Citrus sinensis] 175 5e-57
ref|XP_008796700.1| PREDICTED: uncharacterized protein LOC103712... 162 1e-56
>gb|ABA98804.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1333
Score = 186 bits (471), Expect(2) = 3e-64
Identities = 94/167 (56%), Positives = 119/167 (71%)
Frame = +1
Query: 217 FRYLRETTDIGLLFQRLEGNLFQLHGYVDANYAGDLDLRRSTTGYVFTVGEGAISWKAEL 396
FRYLR TT L F R + L GYVD++YA DLD RRS TGYVFT+G A+SW+A L
Sbjct: 1161 FRYLRGTTYSCLKFGRTDKGLI---GYVDSDYAADLDRRRSLTGYVFTIGSCAVSWRATL 1217
Query: 397 QETIALSTTETEYIAAVEASKEALWLKGLVELFGVMQSSVPVHCDSQSAIHLAKDQRYHK 576
Q +ALSTTE EY+A EA KE +WLKGL ++S + +HCDSQSAI+L KDQ +H+
Sbjct: 1218 QSVVALSTTEAEYMAICEACKELIWLKGLYAELSGVESCISLHCDSQSAIYLTKDQMFHE 1277
Query: 577 RTKHIDVRYHKIRQWVDKDKVIDMVKIGTKKNPADMMTKAIPVEKFK 717
RTKHID++YH +R +++ K + + KI T NPADMMTK IPV KF+
Sbjct: 1278 RTKHIDIKYHFVRDVIEEGK-LKVCKISTHDNPADMMTKPIPVAKFE 1323
Score = 87.8 bits (216), Expect(2) = 3e-64
Identities = 38/60 (63%), Positives = 49/60 (81%)
Frame = +2
Query: 35 QCPQSPEEE*EMSRVPHASVVGSLMYAMICNMPDLDYALSVVSRFMSNPGKPYWDVVKWV 214
QCP + E MSRVP++S VGSLMYAM+C+ PDL YA+S+VSR+MSNPGK +W VV+W+
Sbjct: 1101 QCPSTDAEIEYMSRVPYSSAVGSLMYAMVCSRPDLSYAMSLVSRYMSNPGKEHWRVVQWI 1160
>gb|ABA98656.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1333
Score = 186 bits (471), Expect(2) = 2e-63
Identities = 94/167 (56%), Positives = 119/167 (71%)
Frame = +1
Query: 217 FRYLRETTDIGLLFQRLEGNLFQLHGYVDANYAGDLDLRRSTTGYVFTVGEGAISWKAEL 396
FRYLR TT L F R + L GYVD++YA DLD RRS TGYVFT+G A+SW+A L
Sbjct: 1161 FRYLRGTTYSCLKFGRTDKGLI---GYVDSDYAADLDRRRSLTGYVFTIGSCAVSWRATL 1217
Query: 397 QETIALSTTETEYIAAVEASKEALWLKGLVELFGVMQSSVPVHCDSQSAIHLAKDQRYHK 576
Q +ALSTTE EY+A EA KE +WLKGL ++S + +HCDSQSAI+L KDQ +H+
Sbjct: 1218 QSVVALSTTEAEYMAICEACKELIWLKGLYAELSGVESCISLHCDSQSAIYLTKDQMFHE 1277
Query: 577 RTKHIDVRYHKIRQWVDKDKVIDMVKIGTKKNPADMMTKAIPVEKFK 717
RTKHID++YH +R +++ K + + KI T NPADMMTK IPV KF+
Sbjct: 1278 RTKHIDIKYHFVRDVIEEGK-LKVCKISTHDNPADMMTKPIPVAKFE 1323
Score = 85.1 bits (209), Expect(2) = 2e-63
Identities = 37/60 (61%), Positives = 47/60 (78%)
Frame = +2
Query: 35 QCPQSPEEE*EMSRVPHASVVGSLMYAMICNMPDLDYALSVVSRFMSNPGKPYWDVVKWV 214
QCP E MSRVP++S VGSLMYAM+C+ PDL YA+S+VSR+MSNPGK +W V+W+
Sbjct: 1101 QCPSIDAEIEYMSRVPYSSAVGSLMYAMVCSRPDLSYAMSLVSRYMSNPGKEHWRAVQWI 1160
>gb|AAK70406.1|AF369930_1 pol polyprotein [Citrus x paradisi]
Length = 297
Score = 189 bits (481), Expect(2) = 2e-63
Identities = 96/169 (56%), Positives = 127/169 (75%)
Frame = +1
Query: 220 RYLRETTDIGLLFQRLEGNLFQLHGYVDANYAGDLDLRRSTTGYVFTVGEGAISWKAELQ 399
RYL T D+GLLF++ G Q GY D+++AGDLD +RST+GYVFT+G G++SW++ LQ
Sbjct: 123 RYLYGTVDVGLLFKKNCGQ--QCVGYCDSDFAGDLDKQRSTSGYVFTLGGGSVSWRSILQ 180
Query: 400 ETIALSTTETEYIAAVEASKEALWLKGLVELFGVMQSSVPVHCDSQSAIHLAKDQRYHKR 579
TIALSTTE EYIAA EA KEA+WLKGL+ GV+Q ++ V CD+QSAI LAK+Q YH R
Sbjct: 181 STIALSTTEAEYIAATEAVKEAIWLKGLLGDLGVIQENIAVFCDNQSAIFLAKNQTYHAR 240
Query: 580 TKHIDVRYHKIRQWVDKDKVIDMVKIGTKKNPADMMTKAIPVEKFKSAL 726
TKHIDV+YH +R+ ++ V+ + KI TK NP+DM+TK + KF+ L
Sbjct: 241 TKHIDVKYHYVREIIEGGDVL-LKKIDTKDNPSDMLTKVVSEVKFQHCL 288
Score = 80.9 bits (198), Expect(2) = 2e-63
Identities = 36/62 (58%), Positives = 46/62 (74%)
Frame = +2
Query: 29 SKQCPQSPEEE*EMSRVPHASVVGSLMYAMICNMPDLDYALSVVSRFMSNPGKPYWDVVK 208
S CP+S EE M+ VP+ASVVGSL+YAM+C PD+ A+S+VSR+M NPGK W VK
Sbjct: 60 SSSCPRSQEERDYMACVPYASVVGSLIYAMVCTRPDISQAVSMVSRYMHNPGKSQWLAVK 119
Query: 209 WV 214
W+
Sbjct: 120 WI 121
>emb|CAH66122.1| OSIGBa0146N20.7 [Oryza sativa Indica Group]
Length = 1335
Score = 184 bits (468), Expect(2) = 4e-63
Identities = 94/167 (56%), Positives = 119/167 (71%)
Frame = +1
Query: 217 FRYLRETTDIGLLFQRLEGNLFQLHGYVDANYAGDLDLRRSTTGYVFTVGEGAISWKAEL 396
FRYLR TT L F R + L GYVD++YA DLD RRS TGYVFT+G A+SW+A L
Sbjct: 1163 FRYLRGTTYSCLKFGRTDKGLI---GYVDSDYAADLDRRRSLTGYVFTIGSCAVSWRATL 1219
Query: 397 QETIALSTTETEYIAAVEASKEALWLKGLVELFGVMQSSVPVHCDSQSAIHLAKDQRYHK 576
Q +ALSTTE EY+A EA KE +WLKGL ++S + +HCDSQSAI+L KDQ +H+
Sbjct: 1220 QSVVALSTTEAEYMAICEACKELIWLKGLYAELSGVESCISLHCDSQSAIYLTKDQMFHE 1279
Query: 577 RTKHIDVRYHKIRQWVDKDKVIDMVKIGTKKNPADMMTKAIPVEKFK 717
RTKHID++YH +R +++ K + + KI T NPADMMTK IPV KF+
Sbjct: 1280 RTKHIDIKYHFVRDVIEEGK-LKVCKICTHDNPADMMTKPIPVAKFE 1325
Score = 85.1 bits (209), Expect(2) = 4e-63
Identities = 36/60 (60%), Positives = 48/60 (80%)
Frame = +2
Query: 35 QCPQSPEEE*EMSRVPHASVVGSLMYAMICNMPDLDYALSVVSRFMSNPGKPYWDVVKWV 214
QCP + E MSRVP++S VGSLMYAM+C+ PDL YA+S+VSR+MSNPGK +W ++W+
Sbjct: 1103 QCPSTDAEIEYMSRVPYSSAVGSLMYAMVCSRPDLSYAMSLVSRYMSNPGKEHWRALQWI 1162
>gb|ACS74199.1| putative gag-pol polyprotein [Fragaria x ananassa]
Length = 1297
Score = 190 bits (482), Expect(2) = 2e-62
Identities = 95/166 (57%), Positives = 119/166 (71%)
Frame = +1
Query: 217 FRYLRETTDIGLLFQRLEGNLFQLHGYVDANYAGDLDLRRSTTGYVFTVGEGAISWKAEL 396
F+YL+ T +G++F+R +G + G+VD+++AGDLD RRST GYVFT G G +SWKA L
Sbjct: 1127 FKYLKNTRQLGIMFERRQGEAC-VAGFVDSDFAGDLDRRRSTAGYVFTCGGGPVSWKATL 1185
Query: 397 QETIALSTTETEYIAAVEASKEALWLKGLVELFGVMQSSVPVHCDSQSAIHLAKDQRYHK 576
Q ALSTTE EY+A EASKEA+WL GL GV Q V V CDSQSAIHLAK+Q +H
Sbjct: 1186 QAVTALSTTEAEYMALTEASKEAIWLNGLAGQLGVHQEGVVVKCDSQSAIHLAKNQVFHA 1245
Query: 577 RTKHIDVRYHKIRQWVDKDKVIDMVKIGTKKNPADMMTKAIPVEKF 714
RTKHID RYH+IR WV+ VI + K+ T N AD +TK + VEK+
Sbjct: 1246 RTKHIDARYHRIRDWVEAG-VIIVEKVHTDDNAADFLTKPVSVEKY 1290
Score = 77.4 bits (189), Expect(2) = 2e-62
Identities = 35/62 (56%), Positives = 45/62 (72%)
Frame = +2
Query: 29 SKQCPQSPEEE*EMSRVPHASVVGSLMYAMICNMPDLDYALSVVSRFMSNPGKPYWDVVK 208
++Q P +E M VP+AS VG LMYAMIC PDL A+SVVS++MSNPGK +W+ VK
Sbjct: 1065 AEQRPSDQKEIDMMKNVPYASAVGCLMYAMICTRPDLAQAMSVVSKYMSNPGKRHWEAVK 1124
Query: 209 WV 214
W+
Sbjct: 1125 WI 1126
>gb|ABO36622.1| copia LTR rider [Solanum lycopersicum] gi|133711819|gb|ABO36636.1|
copia LTR rider [Solanum lycopersicum]
Length = 1307
Score = 181 bits (460), Expect(2) = 1e-60
Identities = 94/170 (55%), Positives = 118/170 (69%)
Frame = +1
Query: 217 FRYLRETTDIGLLFQRLEGNLFQLHGYVDANYAGDLDLRRSTTGYVFTVGEGAISWKAEL 396
FRYLR T+D+GL++ L + GY D++YAGD+D RRS TGYVFT+G +SWKA L
Sbjct: 1136 FRYLRGTSDVGLIYGGDTQCL--VTGYSDSDYAGDVDTRRSMTGYVFTLGGSVVSWKATL 1193
Query: 397 QETIALSTTETEYIAAVEASKEALWLKGLVELFGVMQSSVPVHCDSQSAIHLAKDQRYHK 576
Q T+ LSTTE EY+A EA+KE +WLKGLV G+ V+CDS SAI LAKDQ +H+
Sbjct: 1194 QPTVTLSTTEAEYMALTEAAKEGIWLKGLVSDLGLHHDQATVYCDSLSAICLAKDQVHHE 1253
Query: 577 RTKHIDVRYHKIRQWVDKDKVIDMVKIGTKKNPADMMTKAIPVEKFKSAL 726
RTKHIDVRYH +R +K I + K+GT NPADM TK +P KF+ L
Sbjct: 1254 RTKHIDVRYHFLR----SEKRIKVKKVGTADNPADMFTKPVPQSKFQHCL 1299
Score = 79.7 bits (195), Expect(2) = 1e-60
Identities = 37/56 (66%), Positives = 44/56 (78%)
Frame = +2
Query: 41 PQSPEEE*EMSRVPHASVVGSLMYAMICNMPDLDYALSVVSRFMSNPGKPYWDVVK 208
PQS EE+ MSRVP+AS VGSLMYAM+C PDL +A+SVVSRFM PG+ +W VK
Sbjct: 1078 PQSEEEKEYMSRVPYASAVGSLMYAMVCTRPDLAHAVSVVSRFMGQPGREHWQAVK 1133
>emb|CAN61630.1| hypothetical protein VITISV_003191 [Vitis vinifera]
Length = 1208
Score = 177 bits (449), Expect(2) = 1e-60
Identities = 89/170 (52%), Positives = 120/170 (70%)
Frame = +1
Query: 217 FRYLRETTDIGLLFQRLEGNLFQLHGYVDANYAGDLDLRRSTTGYVFTVGEGAISWKAEL 396
F+YL T +GL++ QL G+VDA+YAG++D R+S TGYVFT GA+SWKA L
Sbjct: 1032 FQYLAGTRSLGLVYGGNSQLETQLQGFVDADYAGNIDTRKSLTGYVFTXFGGAVSWKANL 1091
Query: 397 QETIALSTTETEYIAAVEASKEALWLKGLVELFGVMQSSVPVHCDSQSAIHLAKDQRYHK 576
Q +ALSTTE EY+A EA KEA+WLKG+ E + + V V+CD+QSAIHLAK+Q +H+
Sbjct: 1092 QSVVALSTTEAEYMAMTEAVKEAIWLKGITEELAMYRGKVVVYCDNQSAIHLAKNQSFHE 1151
Query: 577 RTKHIDVRYHKIRQWVDKDKVIDMVKIGTKKNPADMMTKAIPVEKFKSAL 726
R+KHIDVR H +R + + I + K+ TK NP+DM+TK++ V KFK L
Sbjct: 1152 RSKHIDVRLHFVRDIIAAGE-IGVGKVHTKDNPSDMLTKSLNVTKFKHCL 1200
Score = 84.0 bits (206), Expect(2) = 1e-60
Identities = 34/69 (49%), Positives = 53/69 (76%)
Frame = +2
Query: 8 QVTSNFFSKQCPQSPEEE*EMSRVPHASVVGSLMYAMICNMPDLDYALSVVSRFMSNPGK 187
+++ F + P++ EE+ M R+P+AS+VGS+MY M+C+ PDL YA+S++SR+MS PGK
Sbjct: 963 RLSQKFIHLKAPETHEEKRFMERIPYASMVGSVMYTMVCSRPDLAYAVSMISRYMSCPGK 1022
Query: 188 PYWDVVKWV 214
P+W VKW+
Sbjct: 1023 PHWQAVKWL 1031
>gb|ABA91380.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1138
Score = 172 bits (437), Expect(2) = 2e-60
Identities = 96/168 (57%), Positives = 115/168 (68%), Gaps = 1/168 (0%)
Frame = +1
Query: 217 FRYLRETTDIGLLFQRLEGNLFQLHGYVDANYAGDLDLRRSTTGYVFTVGEGAISWKAEL 396
FRYL T+ L F R L GYVD+++AGDLD RRS GYVFT+G A+SWKA L
Sbjct: 966 FRYLCGTSSACLQFGRSRDGLV---GYVDSDFAGDLDRRRSLAGYVFTIGGCAVSWKANL 1022
Query: 397 QETIALSTTETEYIAAVEASKEALWLKGL-VELFGVMQSSVPVHCDSQSAIHLAKDQRYH 573
Q T+ALSTTE EY+A EA KE +WL+GL EL GV S + + CDSQSAI L KDQ +H
Sbjct: 1023 QATVALSTTEAEYMAISEACKETIWLRGLYTELCGVT-SCINIFCDSQSAICLTKDQMFH 1081
Query: 574 KRTKHIDVRYHKIRQWVDKDKVIDMVKIGTKKNPADMMTKAIPVEKFK 717
+RTKHIDVRYH IR + + V + KI T NPADMMTK +P KF+
Sbjct: 1082 ERTKHIDVRYHFIRSVITEGDV-KVCKISTHDNPADMMTKPVPATKFE 1128
Score = 87.8 bits (216), Expect(2) = 2e-60
Identities = 40/67 (59%), Positives = 51/67 (76%)
Frame = +2
Query: 29 SKQCPQSPEEE*EMSRVPHASVVGSLMYAMICNMPDLDYALSVVSRFMSNPGKPYWDVVK 208
S CPQS + MSRVP++SVVGSLMYAM+C+ PDL +ALSVVSR+M+NPGK +W V+
Sbjct: 904 SDLCPQSDYDIEYMSRVPYSSVVGSLMYAMVCSRPDLSHALSVVSRYMANPGKEHWKAVQ 963
Query: 209 WVHLDTC 229
W+ C
Sbjct: 964 WIFRYLC 970
>emb|CAD41912.2| OSJNBa0033G05.13 [Oryza sativa Japonica Group]
Length = 1181
Score = 176 bits (446), Expect(2) = 3e-60
Identities = 98/168 (58%), Positives = 117/168 (69%), Gaps = 1/168 (0%)
Frame = +1
Query: 217 FRYLRETTDIGLLFQRLEGNLFQLHGYVDANYAGDLDLRRSTTGYVFTVGEGAISWKAEL 396
FRYL T+ L F R L GYVD+++AGDLD RRS TGYVFT+G A+SWKA L
Sbjct: 1009 FRYLHGTSSACLQFGRSRDGLV---GYVDSDFAGDLDRRRSLTGYVFTIGGCAVSWKASL 1065
Query: 397 QETIALSTTETEYIAAVEASKEALWLKGL-VELFGVMQSSVPVHCDSQSAIHLAKDQRYH 573
Q T+ALSTTE EY+A EA KEA+WL+GL EL GV S + + CDSQSAI L KDQ +H
Sbjct: 1066 QATVALSTTEAEYMAISEACKEAIWLRGLYTELCGVT-SCINIFCDSQSAICLTKDQMFH 1124
Query: 574 KRTKHIDVRYHKIRQWVDKDKVIDMVKIGTKKNPADMMTKAIPVEKFK 717
+RTKHIDVRYH IR + + V + KI T NPADMMTK +P KF+
Sbjct: 1125 ERTKHIDVRYHFIRGVIAEGDV-KVCKISTHDNPADMMTKPVPATKFE 1171
Score = 84.0 bits (206), Expect(2) = 3e-60
Identities = 39/62 (62%), Positives = 48/62 (77%)
Frame = +2
Query: 29 SKQCPQSPEEE*EMSRVPHASVVGSLMYAMICNMPDLDYALSVVSRFMSNPGKPYWDVVK 208
S CPQS MSRVP++S VGSLMYAMIC+ PDL +ALSVVSR+M+NPGK +W V+
Sbjct: 947 SDLCPQSDYNIEYMSRVPYSSAVGSLMYAMICSRPDLSHALSVVSRYMANPGKEHWKDVQ 1006
Query: 209 WV 214
W+
Sbjct: 1007 WI 1008
>emb|CAH66031.1| H0515C11.7 [Oryza sativa Indica Group]
Length = 293
Score = 179 bits (453), Expect(2) = 4e-60
Identities = 97/168 (57%), Positives = 119/168 (70%), Gaps = 1/168 (0%)
Frame = +1
Query: 217 FRYLRETTDIGLLFQRLEGNLFQLHGYVDANYAGDLDLRRSTTGYVFTVGEGAISWKAEL 396
FRYLR TTD L F R + L GYVD+++A DLD RRS TGYVFT+G A+SWKA L
Sbjct: 121 FRYLRGTTDACLKFGRTDKGLV---GYVDSDFAADLDKRRSLTGYVFTIGSCAVSWKATL 177
Query: 397 QETIALSTTETEYIAAVEASKEALWLKGL-VELFGVMQSSVPVHCDSQSAIHLAKDQRYH 573
Q +A STTE EY+A EA KE++WLKGL EL GV S + + CDSQSAI L KDQ +H
Sbjct: 178 QPIVAQSTTEAEYMAIAEACKESVWLKGLFAELCGV-DSCINLFCDSQSAICLTKDQMFH 236
Query: 574 KRTKHIDVRYHKIRQWVDKDKVIDMVKIGTKKNPADMMTKAIPVEKFK 717
+RTKHID++YH +R V + K + + KI T NPADMMTK +PV KF+
Sbjct: 237 ERTKHIDIKYHYVRDVVAQGK-LKVCKISTHDNPADMMTKPVPVAKFE 283
Score = 80.9 bits (198), Expect(2) = 4e-60
Identities = 33/60 (55%), Positives = 47/60 (78%)
Frame = +2
Query: 35 QCPQSPEEE*EMSRVPHASVVGSLMYAMICNMPDLDYALSVVSRFMSNPGKPYWDVVKWV 214
QC + E+ MSRVP++S VGSLMYAM+C+ PDL +A+S+VSR+M+NPGK +W + W+
Sbjct: 61 QCASTDEDVEYMSRVPYSSAVGSLMYAMVCSRPDLSHAMSLVSRYMTNPGKEHWKAIHWI 120
>gb|KOM47916.1| hypothetical protein LR48_Vigan07g162000 [Vigna angularis]
Length = 222
Score = 179 bits (455), Expect(2) = 4e-60
Identities = 88/166 (53%), Positives = 121/166 (72%)
Frame = +1
Query: 220 RYLRETTDIGLLFQRLEGNLFQLHGYVDANYAGDLDLRRSTTGYVFTVGEGAISWKAELQ 399
RYLR+T + L F + E ++ GYVDA++AG++D RRSTTGY+FTVG A+SW +++Q
Sbjct: 51 RYLRKTKEKCLCFSKGE---LKVQGYVDADFAGEIDYRRSTTGYIFTVGTTAVSWMSQIQ 107
Query: 400 ETIALSTTETEYIAAVEASKEALWLKGLVELFGVMQSSVPVHCDSQSAIHLAKDQRYHKR 579
+ +ALSTTE EY+A EASKE +WL+GL+ G +Q +H DSQSAIHLAK+ +H R
Sbjct: 108 KIVALSTTEAEYVAVTEASKELIWLQGLLTELGFIQEKTVLHSDSQSAIHLAKNSTFHSR 167
Query: 580 TKHIDVRYHKIRQWVDKDKVIDMVKIGTKKNPADMMTKAIPVEKFK 717
TKHID+RYH IR ++ D+V+ + KI KNPADM+TK + EK +
Sbjct: 168 TKHIDLRYHFIRSLLE-DEVLTLRKILGSKNPADMLTKVVTTEKLR 212
Score = 80.1 bits (196), Expect(2) = 4e-60
Identities = 31/49 (63%), Positives = 42/49 (85%)
Frame = +2
Query: 68 MSRVPHASVVGSLMYAMICNMPDLDYALSVVSRFMSNPGKPYWDVVKWV 214
M+++P+AS +GSLMYAM+C PD+ YA+ VVSRFMSNPGK +W+ VKW+
Sbjct: 1 MAKIPYASAIGSLMYAMVCTRPDIGYAVGVVSRFMSNPGKAHWEAVKWI 49
>sp|P10978.1|POLX_TOBAC RecName: Full=Retrovirus-related Pol polyprotein from transposon TNT
1-94; Includes: RecName: Full=Protease; Includes:
RecName: Full=Reverse transcriptase; Includes: RecName:
Full=Endonuclease gi|20045|emb|CAA32025.1| unnamed
protein product [Nicotiana tabacum]
Length = 1328
Score = 174 bits (442), Expect(2) = 5e-60
Identities = 91/166 (54%), Positives = 118/166 (71%)
Frame = +1
Query: 220 RYLRETTDIGLLFQRLEGNLFQLHGYVDANYAGDLDLRRSTTGYVFTVGEGAISWKAELQ 399
RYLR TT L F G+ L GY DA+ AGD+D R+S+TGY+FT GAISW+++LQ
Sbjct: 1156 RYLRGTTGDCLCFG---GSDPILKGYTDADMAGDIDNRKSSTGYLFTFSGGAISWQSKLQ 1212
Query: 400 ETIALSTTETEYIAAVEASKEALWLKGLVELFGVMQSSVPVHCDSQSAIHLAKDQRYHKR 579
+ +ALSTTE EYIAA E KE +WLK ++ G+ Q V+CDSQSAI L+K+ YH R
Sbjct: 1213 KCVALSTTEAEYIAATETGKEMIWLKRFLQELGLHQKEYVVYCDSQSAIDLSKNSMYHAR 1272
Query: 580 TKHIDVRYHKIRQWVDKDKVIDMVKIGTKKNPADMMTKAIPVEKFK 717
TKHIDVRYH IR+ VD D+ + ++KI T +NPADM+TK +P KF+
Sbjct: 1273 TKHIDVRYHWIREMVD-DESLKVLKISTNENPADMLTKVVPRNKFE 1317
Score = 84.7 bits (208), Expect(2) = 5e-60
Identities = 34/61 (55%), Positives = 48/61 (78%)
Frame = +2
Query: 32 KQCPQSPEEE*EMSRVPHASVVGSLMYAMICNMPDLDYALSVVSRFMSNPGKPYWDVVKW 211
K CP + EE+ M++VP++S VGSLMYAM+C PD+ +A+ VVSRF+ NPGK +W+ VKW
Sbjct: 1094 KMCPTTVEEKGNMAKVPYSSAVGSLMYAMVCTRPDIAHAVGVVSRFLENPGKEHWEAVKW 1153
Query: 212 V 214
+
Sbjct: 1154 I 1154
>gb|AAT44257.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1211
Score = 175 bits (444), Expect(2) = 5e-60
Identities = 97/168 (57%), Positives = 117/168 (69%), Gaps = 1/168 (0%)
Frame = +1
Query: 217 FRYLRETTDIGLLFQRLEGNLFQLHGYVDANYAGDLDLRRSTTGYVFTVGEGAISWKAEL 396
F+YLR T+ L F R L GYVD+++AGDLD RRS TGYVFT+G A+SWKA L
Sbjct: 1039 FKYLRGTSSACLQFGRSRDGLV---GYVDSDFAGDLDRRRSLTGYVFTIGGCAVSWKASL 1095
Query: 397 QETIALSTTETEYIAAVEASKEALWLKGL-VELFGVMQSSVPVHCDSQSAIHLAKDQRYH 573
Q T+ALSTTE EY+A EA KEA+WL+GL EL GV S + + CDSQSAI KDQ +H
Sbjct: 1096 QATVALSTTEVEYMAISEACKEAIWLRGLYTELCGVT-SCINIFCDSQSAICFTKDQMFH 1154
Query: 574 KRTKHIDVRYHKIRQWVDKDKVIDMVKIGTKKNPADMMTKAIPVEKFK 717
+RTKHIDVRYH IR + + V + KI T NPADMMTK +P KF+
Sbjct: 1155 ERTKHIDVRYHFIRGVIAEGDV-KVCKISTHDNPADMMTKPVPTTKFE 1201
Score = 84.0 bits (206), Expect(2) = 5e-60
Identities = 39/62 (62%), Positives = 49/62 (79%)
Frame = +2
Query: 29 SKQCPQSPEEE*EMSRVPHASVVGSLMYAMICNMPDLDYALSVVSRFMSNPGKPYWDVVK 208
S CPQS + MSRVP+ SVVGSLMYAM+C+ DL +ALSVVSR+M+NPGK +W VV+
Sbjct: 977 SDLCPQSDYDIEYMSRVPYLSVVGSLMYAMVCSRLDLSHALSVVSRYMANPGKEHWKVVQ 1036
Query: 209 WV 214
W+
Sbjct: 1037 WI 1038
>gb|AAX92941.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza sativa
Japonica Group] gi|77548751|gb|ABA91548.1|
retrotransposon protein, putative, Ty1-copia subclass
[Oryza sativa Japonica Group]
Length = 2340
Score = 173 bits (438), Expect(2) = 9e-60
Identities = 92/167 (55%), Positives = 113/167 (67%)
Frame = +1
Query: 217 FRYLRETTDIGLLFQRLEGNLFQLHGYVDANYAGDLDLRRSTTGYVFTVGEGAISWKAEL 396
FRYLR T+ L F R L GYVD+++AGDLD RS GYVFT+G A+SWKA L
Sbjct: 1367 FRYLRGTSSACLQFGRSRDGLV---GYVDSDFAGDLDRGRSLAGYVFTIGGCAVSWKASL 1423
Query: 397 QETIALSTTETEYIAAVEASKEALWLKGLVELFGVMQSSVPVHCDSQSAIHLAKDQRYHK 576
Q T+ALSTTE EY+A EA KEA+WL+GL + + S + + CDSQSAI L KDQ +H+
Sbjct: 1424 QATVALSTTEAEYMAISEACKEAIWLRGLYTVLCAVTSCINIFCDSQSAICLTKDQMFHE 1483
Query: 577 RTKHIDVRYHKIRQWVDKDKVIDMVKIGTKKNPADMMTKAIPVEKFK 717
RTKHIDVRYH IR + + V + KI NPADMMTK +P KF+
Sbjct: 1484 RTKHIDVRYHFIRGLIAEGDV-KICKISIHDNPADMMTKPVPATKFE 1529
Score = 85.5 bits (210), Expect(2) = 9e-60
Identities = 38/62 (61%), Positives = 49/62 (79%)
Frame = +2
Query: 29 SKQCPQSPEEE*EMSRVPHASVVGSLMYAMICNMPDLDYALSVVSRFMSNPGKPYWDVVK 208
S CPQS + MSRVP++S VGSLMYAM+C+ PDL +ALSVVSR+M+NPGK +W V+
Sbjct: 1305 SDLCPQSDYDIEYMSRVPYSSAVGSLMYAMVCSRPDLSHALSVVSRYMANPGKEHWKAVQ 1364
Query: 209 WV 214
W+
Sbjct: 1365 WI 1366
>gb|AAR87163.1| putative polyprotein [Oryza sativa Japonica Group]
gi|53370655|gb|AAU89150.1| integrase core domain
containing protein [Oryza sativa Japonica Group]
gi|108710286|gb|ABF98081.1| retrotransposon protein,
putative, Ty1-copia subclass [Oryza sativa Japonica
Group]
Length = 1322
Score = 176 bits (447), Expect(2) = 9e-60
Identities = 96/168 (57%), Positives = 118/168 (70%), Gaps = 1/168 (0%)
Frame = +1
Query: 217 FRYLRETTDIGLLFQRLEGNLFQLHGYVDANYAGDLDLRRSTTGYVFTVGEGAISWKAEL 396
FRYLR T D L F R++ L GYVD+++A DLD RRS TGYVFT+G A+SWKA L
Sbjct: 1150 FRYLRGTADACLKFGRIDKGLV---GYVDSDFAADLDKRRSLTGYVFTIGSCAVSWKATL 1206
Query: 397 QETIALSTTETEYIAAVEASKEALWLKGL-VELFGVMQSSVPVHCDSQSAIHLAKDQRYH 573
Q +A STTE EY+A EA KE++WLKGL EL GV S + + CDSQSAI L KDQ +H
Sbjct: 1207 QPVVAQSTTEAEYMAIAEACKESVWLKGLFAELCGV-DSCINLFCDSQSAICLTKDQMFH 1265
Query: 574 KRTKHIDVRYHKIRQWVDKDKVIDMVKIGTKKNPADMMTKAIPVEKFK 717
+RTKHID++YH +R V + K + + KI NPADMMTK IPV KF+
Sbjct: 1266 ERTKHIDIKYHYVRDIVAQGK-LKVCKISIHDNPADMMTKPIPVAKFE 1312
Score = 82.0 bits (201), Expect(2) = 9e-60
Identities = 34/60 (56%), Positives = 48/60 (80%)
Frame = +2
Query: 35 QCPQSPEEE*EMSRVPHASVVGSLMYAMICNMPDLDYALSVVSRFMSNPGKPYWDVVKWV 214
QC + E+ MSRVP++S VGSLMYAM+C+ PDL +A+S+VSR+M+NPGK +W V+W+
Sbjct: 1090 QCASTDEDVEYMSRVPYSSAVGSLMYAMVCSWPDLSHAMSLVSRYMANPGKEHWKAVQWI 1149
>ref|XP_010676254.1| PREDICTED: uncharacterized protein LOC104892119 [Beta vulgaris subsp.
vulgaris]
Length = 1947
Score = 178 bits (451), Expect(2) = 1e-59
Identities = 93/172 (54%), Positives = 118/172 (68%), Gaps = 2/172 (1%)
Frame = +1
Query: 217 FRYLRETTDIGLLFQRLEGNLFQ--LHGYVDANYAGDLDLRRSTTGYVFTVGEGAISWKA 390
FRYLR T D+GL++ GN + + GY D++YAGD+D RRS TGYV+T+G +SWKA
Sbjct: 1249 FRYLRGTADVGLIY----GNDTECLVTGYSDSDYAGDIDTRRSMTGYVYTLGGSVVSWKA 1304
Query: 391 ELQETIALSTTETEYIAAVEASKEALWLKGLVELFGVMQSSVPVHCDSQSAIHLAKDQRY 570
LQ ++ LSTTE EY+A A+KE +WL+GLV G+ V+CDS SAI LAKDQ +
Sbjct: 1305 TLQSSVTLSTTEAEYMALTAAAKEGIWLRGLVSDLGLHHDRAIVYCDSLSAICLAKDQVH 1364
Query: 571 HKRTKHIDVRYHKIRQWVDKDKVIDMVKIGTKKNPADMMTKAIPVEKFKSAL 726
H RTKHIDVRYH +R +K I + K+GT NPADM TK +PV KFK L
Sbjct: 1365 HDRTKHIDVRYHFLR----SEKRIVVKKVGTADNPADMFTKPVPVRKFKHCL 1412
Score = 80.1 bits (196), Expect(2) = 1e-59
Identities = 37/56 (66%), Positives = 45/56 (80%)
Frame = +2
Query: 41 PQSPEEE*EMSRVPHASVVGSLMYAMICNMPDLDYALSVVSRFMSNPGKPYWDVVK 208
PQS EE+ MS+VP+AS VGSLMYAM+C PDL +A+SVVSRFM+ PGK +W VK
Sbjct: 1191 PQSDEEKEYMSKVPYASAVGSLMYAMVCTRPDLAHAVSVVSRFMTQPGKEHWQAVK 1246
>gb|AAT85194.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1241
Score = 174 bits (441), Expect(2) = 2e-59
Identities = 97/168 (57%), Positives = 116/168 (69%), Gaps = 1/168 (0%)
Frame = +1
Query: 217 FRYLRETTDIGLLFQRLEGNLFQLHGYVDANYAGDLDLRRSTTGYVFTVGEGAISWKAEL 396
FRYLR T+ L F R L GYVD+++AGDLD RRS TGYVFTVG A+SWKA L
Sbjct: 1069 FRYLRGTSSACLQFGRSSDGLV---GYVDSDFAGDLDRRRSLTGYVFTVGGCAVSWKASL 1125
Query: 397 QETIALSTTETEYIAAVEASKEALWLKGL-VELFGVMQSSVPVHCDSQSAIHLAKDQRYH 573
Q T+ALSTTE EY+A EA KE +WL+GL EL GV S + + CDSQSAI L KDQ +H
Sbjct: 1126 QATVALSTTEAEYMAISEACKEVIWLRGLYTELCGVT-SCINIFCDSQSAICLTKDQMFH 1184
Query: 574 KRTKHIDVRYHKIRQWVDKDKVIDMVKIGTKKNPADMMTKAIPVEKFK 717
+RTKHID+RYH IR + + V + KI T NP DMMTK +P KF+
Sbjct: 1185 ERTKHIDLRYHFIRGVIAEGDV-KVCKISTHDNPVDMMTKPVPATKFE 1231
Score = 83.2 bits (204), Expect(2) = 2e-59
Identities = 37/62 (59%), Positives = 48/62 (77%)
Frame = +2
Query: 29 SKQCPQSPEEE*EMSRVPHASVVGSLMYAMICNMPDLDYALSVVSRFMSNPGKPYWDVVK 208
S CPQS + MSRVP++S V SLMYAM+C+ PDL +ALSVVSR+M+NPGK +W V+
Sbjct: 1007 SDLCPQSAYDIEYMSRVPYSSAVSSLMYAMVCSRPDLSHALSVVSRYMANPGKEHWKAVQ 1066
Query: 209 WV 214
W+
Sbjct: 1067 WI 1068
>gb|AAT01387.1| putative polyprotein [Oryza sativa Japonica Group]
gi|48475101|gb|AAT44170.1| putative polyprotein [Oryza
sativa Japonica Group]
Length = 1175
Score = 173 bits (438), Expect(2) = 6e-58
Identities = 93/168 (55%), Positives = 117/168 (69%), Gaps = 1/168 (0%)
Frame = +1
Query: 217 FRYLRETTDIGLLFQRLEGNLFQLHGYVDANYAGDLDLRRSTTGYVFTVGEGAISWKAEL 396
FRYLR+T + L F R L GYVD+++A DLD RRS TGYVFT+G A+SWKA L
Sbjct: 1003 FRYLRDTANACLKFGRTNKGLI---GYVDSDFAADLDKRRSLTGYVFTIGSCAVSWKATL 1059
Query: 397 QETIALSTTETEYIAAVEASKEALWLKGL-VELFGVMQSSVPVHCDSQSAIHLAKDQRYH 573
+ +A STTE EY+A EA KE++WLKGL EL GV S + + CDSQSAI L KDQ +H
Sbjct: 1060 RHVVAQSTTEAEYMAIAEACKESVWLKGLFAELCGVY-SCINLFCDSQSAICLTKDQMFH 1118
Query: 574 KRTKHIDVRYHKIRQWVDKDKVIDMVKIGTKKNPADMMTKAIPVEKFK 717
+RTKHID++YH +R V + K + + KI T NP DMMTK +PV KF+
Sbjct: 1119 ERTKHIDIKYHYVRDVVAQGK-LKVCKISTHDNPVDMMTKHVPVAKFE 1165
Score = 79.3 bits (194), Expect(2) = 6e-58
Identities = 33/60 (55%), Positives = 48/60 (80%)
Frame = +2
Query: 35 QCPQSPEEE*EMSRVPHASVVGSLMYAMICNMPDLDYALSVVSRFMSNPGKPYWDVVKWV 214
QC + E+ MSRVP++SVVGSLMYAM+C+ DL +A+S+VSR+M+NPGK +W ++W+
Sbjct: 943 QCASTDEDVEYMSRVPYSSVVGSLMYAMVCSRLDLSHAMSLVSRYMANPGKEHWKAIQWI 1002
>gb|AFB73912.1| polyprotein [Citrus sinensis]
Length = 1309
Score = 175 bits (443), Expect(2) = 5e-57
Identities = 84/165 (50%), Positives = 123/165 (74%)
Frame = +1
Query: 220 RYLRETTDIGLLFQRLEGNLFQLHGYVDANYAGDLDLRRSTTGYVFTVGEGAISWKAELQ 399
RY+R T+++ L + G+ F + GYVD+++AGDLD R+STTGYVFT+ A+SW ++LQ
Sbjct: 1137 RYIRGTSNVALCYG---GSEFTVRGYVDSDFAGDLDKRKSTTGYVFTLAGAAVSWVSKLQ 1193
Query: 400 ETIALSTTETEYIAAVEASKEALWLKGLVELFGVMQSSVPVHCDSQSAIHLAKDQRYHKR 579
+ALSTTE EY+AA +A KEA+W++ L+E G Q +PV CDSQSA+H+A++ +H R
Sbjct: 1194 TVVALSTTEAEYMAATQACKEAIWIQRLLEELGHKQQKIPVFCDSQSALHIARNPAFHSR 1253
Query: 580 TKHIDVRYHKIRQWVDKDKVIDMVKIGTKKNPADMMTKAIPVEKF 714
TKHI V+YH +R+ V+ D +D+ KI TK+N AD++TK+I +KF
Sbjct: 1254 TKHIGVQYHFVREVVE-DGSVDLQKIHTKENLADVLTKSINTDKF 1297
Score = 74.3 bits (181), Expect(2) = 5e-57
Identities = 34/60 (56%), Positives = 42/60 (70%)
Frame = +2
Query: 29 SKQCPQSPEEE*EMSRVPHASVVGSLMYAMICNMPDLDYALSVVSRFMSNPGKPYWDVVK 208
S CP + E EMSRVP+AS VGSLM+AMIC PD+ A+ VSR+M+NPG +W VK
Sbjct: 1074 SSMCPSNEAERKEMSRVPYASAVGSLMFAMICTRPDIAQAVGAVSRYMANPGGEHWIAVK 1133
>ref|XP_008796700.1| PREDICTED: uncharacterized protein LOC103712082 [Phoenix dactylifera]
Length = 2199
Score = 162 bits (411), Expect(2) = 1e-56
Identities = 87/180 (48%), Positives = 121/180 (67%), Gaps = 10/180 (5%)
Frame = +1
Query: 217 FRYLRETTDIGLLFQRLEG-----NLFQ-----LHGYVDANYAGDLDLRRSTTGYVFTVG 366
FRYL+ T +GL+F + G N+ L +VDAN+ GDLD +RST GYVF++
Sbjct: 1247 FRYLQGTRRLGLIFGQQYGLRRNSNVSSEFSGPLEEFVDANFVGDLDTKRSTIGYVFSMY 1306
Query: 367 EGAISWKAELQETIALSTTETEYIAAVEASKEALWLKGLVELFGVMQSSVPVHCDSQSAI 546
G +SW++ LQ ALSTTE EYI E +KEAL LK L++ GV QS+V +H DSQSA+
Sbjct: 1307 SGPVSWRSTLQSITALSTTEAEYIGITEVAKEALCLKRLIQEMGVNQSTVVLHSDSQSAL 1366
Query: 547 HLAKDQRYHKRTKHIDVRYHKIRQWVDKDKVIDMVKIGTKKNPADMMTKAIPVEKFKSAL 726
L ++ YH RT HID+RYHKIR+ V++ +V+ +VK+ TKKN +D +TK +P + F S +
Sbjct: 1367 QLVQNPVYHARTNHIDMRYHKIRELVEEGEVM-LVKVHTKKNQSDALTKTLPRDSFLSCV 1425
Score = 85.5 bits (210), Expect(2) = 1e-56
Identities = 37/63 (58%), Positives = 49/63 (77%)
Frame = +2
Query: 26 FSKQCPQSPEEE*EMSRVPHASVVGSLMYAMICNMPDLDYALSVVSRFMSNPGKPYWDVV 205
F QCPQ EE+ M RVP+ASVVGS+MYAM+C PD+ +A+S VSR+M+NPGK +W +
Sbjct: 1184 FKLQCPQIDEEKGYMERVPYASVVGSVMYAMVCCRPDIAHAVSQVSRYMANPGKEHWKAL 1243
Query: 206 KWV 214
KW+
Sbjct: 1244 KWI 1246