BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Ophiopogon21_contig00014703
         (779 letters)

Database: ./nr 
           77,306,371 sequences; 28,104,191,420 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_008812838.1| PREDICTED: RNA pseudouridine synthase 4, mit...   284   6e-74
ref|XP_009396599.1| PREDICTED: RNA pseudouridine synthase 4, mit...   281   3e-73
ref|XP_010943215.1| PREDICTED: RNA pseudouridine synthase 4, mit...   275   3e-71
ref|XP_010943216.1| PREDICTED: RNA pseudouridine synthase 4, mit...   265   2e-68
ref|XP_010647894.1| PREDICTED: RNA pseudouridine synthase 4, mit...   265   3e-68
ref|XP_002282614.1| PREDICTED: RNA pseudouridine synthase 4, mit...   265   3e-68
ref|XP_008236380.1| PREDICTED: RNA pseudouridine synthase 4, mit...   263   1e-67
ref|XP_007042534.1| Ribosomal pseudouridine synthase, putative [...   263   1e-67
ref|XP_007199810.1| hypothetical protein PRUPE_ppa004969mg [Prun...   261   3e-67
ref|XP_002518674.1| ribosomal pseudouridine synthase, putative [...   261   5e-67
ref|XP_011001179.1| PREDICTED: RNA pseudouridine synthase 4, mit...   260   7e-67
ref|XP_010271251.1| PREDICTED: RNA pseudouridine synthase 4, mit...   259   1e-66
ref|XP_009805028.1| PREDICTED: RNA pseudouridine synthase 4, mit...   259   2e-66
ref|XP_009805027.1| PREDICTED: RNA pseudouridine synthase 4, mit...   259   2e-66
ref|XP_011624446.1| PREDICTED: RNA pseudouridine synthase 4, mit...   258   2e-66
ref|XP_007199809.1| hypothetical protein PRUPE_ppa004969mg [Prun...   258   2e-66
ref|XP_002313876.2| hypothetical protein POPTR_0009s09860g [Popu...   258   3e-66
ref|XP_012450617.1| PREDICTED: RNA pseudouridine synthase 4, mit...   256   9e-66
ref|XP_009629273.1| PREDICTED: RNA pseudouridine synthase 4, mit...   256   1e-65
ref|XP_009629272.1| PREDICTED: RNA pseudouridine synthase 4, mit...   256   1e-65

>ref|XP_008812838.1| PREDICTED: RNA pseudouridine synthase 4, mitochondrial [Phoenix
           dactylifera]
          Length = 476

 Score =  284 bits (726), Expect = 6e-74
 Identities = 151/236 (63%), Positives = 179/236 (75%), Gaps = 6/236 (2%)
 Frame = -2

Query: 778 ESSGILVMGRTQTSASILHTIFREKTSGVGVDDIESIQRALQKKYWALVIGTPRLSKGRI 599
           +SSG+LV+GRTQTSA ILH+IFREKTSG   DDI++ +R LQ+KY ALVIGTP+ SKG I
Sbjct: 239 DSSGVLVLGRTQTSALILHSIFREKTSGALSDDIKTTRRTLQRKYLALVIGTPKHSKGLI 298

Query: 598 PAPLAKIVLEDGKSDRITIAR-DESTPSQHALTEYKVIR-SAHGYTWLELRPLTGRKHQL 425
            APLAKIVLEDGKS+RITI    +ST S HALTEY+VIR SAHG+TWLEL PLTGRKHQL
Sbjct: 299 SAPLAKIVLEDGKSERITIVMGTKSTSSHHALTEYRVIRSSAHGFTWLELCPLTGRKHQL 358

Query: 424 RVHCAEALGTPIVGDYKYGWKAHRNLEPMPCVQPKVEHDEL----PFGLESGGGSISDKQ 257
           RVHCAEALGTPIVGDYKYGW AHR  EPMP  +   E ++L    PFGL+  GGSI++KQ
Sbjct: 359 RVHCAEALGTPIVGDYKYGWYAHRKWEPMPWPESMSEDEKLPKKRPFGLDLDGGSIAEKQ 418

Query: 256 PRLHLHCREMILPNIATAXXXXXXXXXXXXXXXXXXXXDFVAPVPSYMKESWEILN 89
           P LHLHC++MILPNI+ A                    + VAP+P +M+ESW+IL+
Sbjct: 419 PYLHLHCKQMILPNISAA-LCQLQSSAVDHDFSKLEKINLVAPLPLHMQESWDILS 473


>ref|XP_009396599.1| PREDICTED: RNA pseudouridine synthase 4, mitochondrial [Musa
           acuminata subsp. malaccensis]
          Length = 469

 Score =  281 bits (720), Expect = 3e-73
 Identities = 150/236 (63%), Positives = 175/236 (74%), Gaps = 6/236 (2%)
 Frame = -2

Query: 778 ESSGILVMGRTQTSASILHTIFREKTSGVGVDDIESIQRALQKKYWALVIGTPRLSKGRI 599
           +SSG+LV+GRTQTSA+ILH++FREKTSG   DDI   QR LQ+KY ALVIGTPR SKG I
Sbjct: 233 DSSGVLVLGRTQTSATILHSLFREKTSGALADDINVTQRPLQRKYLALVIGTPRHSKGLI 292

Query: 598 PAPLAKIVLEDGKSDRITIARD-ESTPSQHALTEYKVIRSAHGYTWLELRPLTGRKHQLR 422
            APLAKIVLEDGKS+RI IA D +S  SQHALTEYKVIRS+H YTWLEL PLTGRKHQLR
Sbjct: 293 SAPLAKIVLEDGKSERIIIADDGKSASSQHALTEYKVIRSSHDYTWLELFPLTGRKHQLR 352

Query: 421 VHCAEALGTPIVGDYKYGWKAHRNLEPMPCVQ-----PKVEHDELPFGLESGGGSISDKQ 257
           VHCAE LGTPIVGD+KYG  AHR  EPM   +      K+  ++LPFGLE  GGSIS+K 
Sbjct: 353 VHCAEVLGTPIVGDHKYGRHAHRKWEPMRLPESIIKGEKIPKEKLPFGLELDGGSISEKL 412

Query: 256 PRLHLHCREMILPNIATAXXXXXXXXXXXXXXXXXXXXDFVAPVPSYMKESWEILN 89
           P LHLHC++M+LPNI+ A                    + VAP+PS+M+ SWEIL+
Sbjct: 413 PGLHLHCKQMVLPNISVA--LQQLQSSTDHDFSKVEKLNLVAPLPSHMQRSWEILS 466


>ref|XP_010943215.1| PREDICTED: RNA pseudouridine synthase 4, mitochondrial isoform X1
           [Elaeis guineensis]
          Length = 478

 Score =  275 bits (703), Expect = 3e-71
 Identities = 148/237 (62%), Positives = 175/237 (73%), Gaps = 7/237 (2%)
 Frame = -2

Query: 778 ESSGILVMGRTQTSASILHTIFREKTSGVGVDDIESIQRALQKKYWALVIGTPRLSKGRI 599
           +SSG+LV+GRTQTSA +LH+IFREKTSG   DDI++  RALQ+KY ALVIGTP+  KG I
Sbjct: 239 DSSGVLVLGRTQTSALVLHSIFREKTSGALSDDIKTTCRALQRKYLALVIGTPKRWKGLI 298

Query: 598 PAPLAKIVLEDGKSDRITIARDEST-PSQHALTEYKVIR-SAHGYTWLELRPLTGRKHQL 425
            APL KIVLEDGKS+RITI +D  T  S HALTEY+VIR SAHG+TWLEL PLTGRKHQL
Sbjct: 299 SAPLTKIVLEDGKSERITIVKDTKTASSHHALTEYQVIRSSAHGFTWLELCPLTGRKHQL 358

Query: 424 RVHCAEALGTPIVGDYKYGWKAHRNLEPMPCVQPKVEHDEL-----PFGLESGGGSISDK 260
           RVH AEALGTPIVGDYKYGW AHR  EPMP  +   E ++L     PFGLE  GGSI++K
Sbjct: 359 RVHLAEALGTPIVGDYKYGWYAHRKWEPMPWPESMSEDEKLPKNKPPFGLELDGGSIAEK 418

Query: 259 QPRLHLHCREMILPNIATAXXXXXXXXXXXXXXXXXXXXDFVAPVPSYMKESWEILN 89
           QP LHLHC++MILPNI+ A                    + VAP+P +M+ SW+IL+
Sbjct: 419 QPFLHLHCKQMILPNISAA-LWQLQSSSVDHDFLELEKLNLVAPLPLHMRVSWDILS 474


>ref|XP_010943216.1| PREDICTED: RNA pseudouridine synthase 4, mitochondrial isoform X2
           [Elaeis guineensis]
          Length = 475

 Score =  265 bits (678), Expect = 2e-68
 Identities = 146/237 (61%), Positives = 172/237 (72%), Gaps = 7/237 (2%)
 Frame = -2

Query: 778 ESSGILVMGRTQTSASILHTIFREKTSGVGVDDIESIQRALQKKYWALVIGTPRLSKGRI 599
           +SSG+LV+GRTQTSA +LH+IFREKTSG   D   +  RALQ+KY ALVIGTP+  KG I
Sbjct: 239 DSSGVLVLGRTQTSALVLHSIFREKTSGALSD---TTCRALQRKYLALVIGTPKRWKGLI 295

Query: 598 PAPLAKIVLEDGKSDRITIARDESTPSQH-ALTEYKVIRS-AHGYTWLELRPLTGRKHQL 425
            APL KIVLEDGKS+RITI +D  T S H ALTEY+VIRS AHG+TWLEL PLTGRKHQL
Sbjct: 296 SAPLTKIVLEDGKSERITIVKDTKTASSHHALTEYQVIRSSAHGFTWLELCPLTGRKHQL 355

Query: 424 RVHCAEALGTPIVGDYKYGWKAHRNLEPMPCVQPKVEHDEL-----PFGLESGGGSISDK 260
           RVH AEALGTPIVGDYKYGW AHR  EPMP  +   E ++L     PFGLE  GGSI++K
Sbjct: 356 RVHLAEALGTPIVGDYKYGWYAHRKWEPMPWPESMSEDEKLPKNKPPFGLELDGGSIAEK 415

Query: 259 QPRLHLHCREMILPNIATAXXXXXXXXXXXXXXXXXXXXDFVAPVPSYMKESWEILN 89
           QP LHLHC++MILPNI+ A                    + VAP+P +M+ SW+IL+
Sbjct: 416 QPFLHLHCKQMILPNISAA-LWQLQSSSVDHDFLELEKLNLVAPLPLHMRVSWDILS 471


>ref|XP_010647894.1| PREDICTED: RNA pseudouridine synthase 4, mitochondrial isoform X2
           [Vitis vinifera]
          Length = 430

 Score =  265 bits (676), Expect = 3e-68
 Identities = 137/241 (56%), Positives = 174/241 (72%), Gaps = 11/241 (4%)
 Frame = -2

Query: 778 ESSGILVMGRTQTSASILHTIFREKTSGVGVDDIESIQRALQKKYWALVIGTPRLSKGRI 599
           +SSGIL+MGRTQTSA+ILH+IFREKT G   +DI++ +R LQ++YWALVIG+PR  +G I
Sbjct: 193 DSSGILIMGRTQTSATILHSIFREKTFGASNNDIDTKKRILQRRYWALVIGSPRRPRGLI 252

Query: 598 PAPLAKIVLEDGKSDRITIARDEST-PSQHALTEYKVIRSA-HGYTWLELRPLTGRKHQL 425
            APL K+V++DGKS+RITI  +  T  SQHA+TEY+VI+S+ HGYTWLEL PLTGRKHQL
Sbjct: 253 SAPLGKVVVDDGKSERITIVDNVQTMSSQHAITEYRVIKSSCHGYTWLELSPLTGRKHQL 312

Query: 424 RVHCAEALGTPIVGDYKYGWKAHRNLEPMPCVQPKVEHD---------ELPFGLESGGGS 272
           RVHCAE LGTPIVGDYKYGW+AHR  + +   Q  +E +           PFGL+   GS
Sbjct: 313 RVHCAEVLGTPIVGDYKYGWQAHRKWKQL--FQSNIEKNLDENLSNRKTHPFGLDLESGS 370

Query: 271 ISDKQPRLHLHCREMILPNIATAXXXXXXXXXXXXXXXXXXXXDFVAPVPSYMKESWEIL 92
           I DKQP LHLHC++M+LPN++ A                    +FVAP+PS+M+ SW+IL
Sbjct: 371 ILDKQPHLHLHCKQMVLPNVSLA--LQNLQLSAECDLSELESLEFVAPLPSHMQRSWDIL 428

Query: 91  N 89
           N
Sbjct: 429 N 429


>ref|XP_002282614.1| PREDICTED: RNA pseudouridine synthase 4, mitochondrial isoform X1
           [Vitis vinifera] gi|296090438|emb|CBI40257.3| unnamed
           protein product [Vitis vinifera]
          Length = 476

 Score =  265 bits (676), Expect = 3e-68
 Identities = 137/241 (56%), Positives = 174/241 (72%), Gaps = 11/241 (4%)
 Frame = -2

Query: 778 ESSGILVMGRTQTSASILHTIFREKTSGVGVDDIESIQRALQKKYWALVIGTPRLSKGRI 599
           +SSGIL+MGRTQTSA+ILH+IFREKT G   +DI++ +R LQ++YWALVIG+PR  +G I
Sbjct: 239 DSSGILIMGRTQTSATILHSIFREKTFGASNNDIDTKKRILQRRYWALVIGSPRRPRGLI 298

Query: 598 PAPLAKIVLEDGKSDRITIARDEST-PSQHALTEYKVIRSA-HGYTWLELRPLTGRKHQL 425
            APL K+V++DGKS+RITI  +  T  SQHA+TEY+VI+S+ HGYTWLEL PLTGRKHQL
Sbjct: 299 SAPLGKVVVDDGKSERITIVDNVQTMSSQHAITEYRVIKSSCHGYTWLELSPLTGRKHQL 358

Query: 424 RVHCAEALGTPIVGDYKYGWKAHRNLEPMPCVQPKVEHD---------ELPFGLESGGGS 272
           RVHCAE LGTPIVGDYKYGW+AHR  + +   Q  +E +           PFGL+   GS
Sbjct: 359 RVHCAEVLGTPIVGDYKYGWQAHRKWKQL--FQSNIEKNLDENLSNRKTHPFGLDLESGS 416

Query: 271 ISDKQPRLHLHCREMILPNIATAXXXXXXXXXXXXXXXXXXXXDFVAPVPSYMKESWEIL 92
           I DKQP LHLHC++M+LPN++ A                    +FVAP+PS+M+ SW+IL
Sbjct: 417 ILDKQPHLHLHCKQMVLPNVSLA--LQNLQLSAECDLSELESLEFVAPLPSHMQRSWDIL 474

Query: 91  N 89
           N
Sbjct: 475 N 475


>ref|XP_008236380.1| PREDICTED: RNA pseudouridine synthase 4, mitochondrial [Prunus
           mume]
          Length = 483

 Score =  263 bits (671), Expect = 1e-67
 Identities = 136/239 (56%), Positives = 165/239 (69%), Gaps = 9/239 (3%)
 Frame = -2

Query: 778 ESSGILVMGRTQTSASILHTIFREKTSGVGVDDIESIQRALQKKYWALVIGTPRLSKGRI 599
           +SSGILVMGRTQTSA++LH+IFREKT G   D I+  +R LQ++YWALVIG+PR  KG I
Sbjct: 246 DSSGILVMGRTQTSATVLHSIFREKTFGASNDVIDDAKRILQRRYWALVIGSPRQRKGLI 305

Query: 598 PAPLAKIVLEDGKSDRITIARDEST-PSQHALTEYKVIRS-AHGYTWLELRPLTGRKHQL 425
            APL K+V+++GKSDRITI  D  T PSQHA+T+YKVI S   GYTWLEL PLTGRKHQL
Sbjct: 306 SAPLGKVVVDNGKSDRITIVNDSQTLPSQHAITKYKVIGSPCPGYTWLELTPLTGRKHQL 365

Query: 424 RVHCAEALGTPIVGDYKYGWKAHRNLEPMPCVQPKVEHDE-------LPFGLESGGGSIS 266
           RVHCAE L TPIVGDYKYGW+ HRN +P+     +   DE       LPF L    GS+S
Sbjct: 366 RVHCAEVLQTPIVGDYKYGWQTHRNWKPLAWSNNECHSDEEFPKTKNLPFDLNMESGSVS 425

Query: 265 DKQPRLHLHCREMILPNIATAXXXXXXXXXXXXXXXXXXXXDFVAPVPSYMKESWEILN 89
           +K PRLHLHC++M+LPN+  A                    + VAP+PS+M+ SW I N
Sbjct: 426 EKNPRLHLHCKQMVLPNVNLA--LQNVKLHSDSDLSELESLELVAPLPSFMQRSWNITN 482


>ref|XP_007042534.1| Ribosomal pseudouridine synthase, putative [Theobroma cacao]
           gi|508706469|gb|EOX98365.1| Ribosomal pseudouridine
           synthase, putative [Theobroma cacao]
          Length = 477

 Score =  263 bits (671), Expect = 1e-67
 Identities = 136/239 (56%), Positives = 170/239 (71%), Gaps = 9/239 (3%)
 Frame = -2

Query: 778 ESSGILVMGRTQTSASILHTIFREKTSGVGVDDIESIQRALQKKYWALVIGTPRLSKGRI 599
           +SSGILVMGRTQ SA+ILH++FRE+T+    DD+++ +R LQK+YWALVIG+PR  KG I
Sbjct: 240 DSSGILVMGRTQMSATILHSVFREETNDASKDDVDNEKRILQKRYWALVIGSPRRPKGMI 299

Query: 598 PAPLAKIVLEDGKSDRITI-ARDESTPSQHALTEYKVIR-SAHGYTWLELRPLTGRKHQL 425
            APL K+V++DGKSDRIT+    +   SQ A TEY+VI+ ++HGYTWLEL PLTGRKHQL
Sbjct: 300 VAPLRKVVVDDGKSDRITVFDNSQIVSSQRAKTEYQVIKTTSHGYTWLELSPLTGRKHQL 359

Query: 424 RVHCAEALGTPIVGDYKYGWKAHRNLEPMPCVQPK-------VEHDELPFGLESGGGSIS 266
           RVHCAE LGTPIVGDYKYGW+AHR  + +P    K        E + LPFGL    GSIS
Sbjct: 360 RVHCAEVLGTPIVGDYKYGWQAHRRWQHLPESDLKKSSNDKCPEENMLPFGLNMDSGSIS 419

Query: 265 DKQPRLHLHCREMILPNIATAXXXXXXXXXXXXXXXXXXXXDFVAPVPSYMKESWEILN 89
            K+PRLHLHCREMI PN++ A                    + VAP+PSYM++SW+I+N
Sbjct: 420 AKRPRLHLHCREMIFPNVSQA--LQNLQLSTDHDLSKLKSLEVVAPLPSYMQKSWDIMN 476


>ref|XP_007199810.1| hypothetical protein PRUPE_ppa004969mg [Prunus persica]
           gi|462395210|gb|EMJ01009.1| hypothetical protein
           PRUPE_ppa004969mg [Prunus persica]
          Length = 483

 Score =  261 bits (668), Expect = 3e-67
 Identities = 135/239 (56%), Positives = 165/239 (69%), Gaps = 9/239 (3%)
 Frame = -2

Query: 778 ESSGILVMGRTQTSASILHTIFREKTSGVGVDDIESIQRALQKKYWALVIGTPRLSKGRI 599
           +SSGILVMGRTQTSA++LH+IFREKT G   D+I+  +R LQ++YWALVIG+PR  KG I
Sbjct: 246 DSSGILVMGRTQTSATVLHSIFREKTFGASNDEIDDAKRILQRRYWALVIGSPRQRKGLI 305

Query: 598 PAPLAKIVLEDGKSDRITIARDEST-PSQHALTEYKVIRS-AHGYTWLELRPLTGRKHQL 425
            APL K+V+++GKSDRITI  D  T PSQHA+T+YKVI S   GYTWLEL PLTGRKHQL
Sbjct: 306 SAPLGKVVVDNGKSDRITIVNDSQTLPSQHAITKYKVIGSPCPGYTWLELTPLTGRKHQL 365

Query: 424 RVHCAEALGTPIVGDYKYGWKAHRNLEPMPCVQPKVEHDE-------LPFGLESGGGSIS 266
           RVHCAE L TPIVGDYKYGW+ HRN +P+     +   DE       LPF L    GS+S
Sbjct: 366 RVHCAEVLRTPIVGDYKYGWQTHRNWKPLAWSNNECHSDEEFPKRKNLPFDLNMESGSVS 425

Query: 265 DKQPRLHLHCREMILPNIATAXXXXXXXXXXXXXXXXXXXXDFVAPVPSYMKESWEILN 89
           +K PRLHLHC++M+LPN+  A                    + VA +PS+M+ SW I N
Sbjct: 426 EKNPRLHLHCKQMVLPNVNLA--LQNVKLHSDSDLSELESLELVAALPSFMQRSWNITN 482


>ref|XP_002518674.1| ribosomal pseudouridine synthase, putative [Ricinus communis]
            gi|223542055|gb|EEF43599.1| ribosomal pseudouridine
            synthase, putative [Ricinus communis]
          Length = 536

 Score =  261 bits (666), Expect = 5e-67
 Identities = 131/238 (55%), Positives = 167/238 (70%), Gaps = 8/238 (3%)
 Frame = -2

Query: 778  ESSGILVMGRTQTSASILHTIFREKTSGVGVDDIESIQRALQKKYWALVIGTPRLSKGRI 599
            +SSGILVMGRTQTS  +LH++FREKT      DI   +R LQ+KYWALVIG+PR  KG I
Sbjct: 300  DSSGILVMGRTQTSTMVLHSVFREKTFAASNHDIGERRRILQRKYWALVIGSPRRQKGII 359

Query: 598  PAPLAKIVLEDGKSDRITIARD-ESTPSQHALTEYKVIRSAHGYTWLELRPLTGRKHQLR 422
             APL K+V++DGKSDRIT+  + EST  QHA+T+Y+V+ S+HGY WLEL P+TGRKHQLR
Sbjct: 360  SAPLGKVVVDDGKSDRITVVENAESTSFQHAVTQYRVMESSHGYAWLELSPITGRKHQLR 419

Query: 421  VHCAEALGTPIVGDYKYGWKAHRNLEPMPCVQ-PKVEHDE------LPFGLESGGGSISD 263
            VHCAE LGTPIVGDYKYGW+ HR  + +P     K+ ++       LPFG++   GSIS+
Sbjct: 420  VHCAEVLGTPIVGDYKYGWQVHRKWKQLPFPNLEKISNENALCKKILPFGIDLESGSISE 479

Query: 262  KQPRLHLHCREMILPNIATAXXXXXXXXXXXXXXXXXXXXDFVAPVPSYMKESWEILN 89
            K PRLHLHC++M+LP+++ A                    D  AP+PSYM+ SW+ILN
Sbjct: 480  KHPRLHLHCKQMVLPDVSQALRGVQTSSNYDFSDLKSIELD--APLPSYMQRSWDILN 535


>ref|XP_011001179.1| PREDICTED: RNA pseudouridine synthase 4, mitochondrial isoform X2
           [Populus euphratica]
          Length = 471

 Score =  260 bits (665), Expect = 7e-67
 Identities = 130/237 (54%), Positives = 165/237 (69%), Gaps = 8/237 (3%)
 Frame = -2

Query: 778 ESSGILVMGRTQTSASILHTIFREKTSGVGVDDIESIQRALQKKYWALVIGTPRLSKGRI 599
           + SGILVMGRTQTSA++LH IFREKT     DD+   +R LQ+KYWALVIG+PR  KG I
Sbjct: 235 DCSGILVMGRTQTSATVLHAIFREKTLAASNDDVGDKRRILQRKYWALVIGSPRRQKGLI 294

Query: 598 PAPLAKIVLEDGKSDRITIARD-ESTPSQHALTEYKVIRSAHGYTWLELRPLTGRKHQLR 422
            APL K+V+++GKSDRIT+  + ++  SQHA+T+Y+VI S+HG+TWLEL PLTGRKHQLR
Sbjct: 295 SAPLGKVVVDNGKSDRITVVENSQNLSSQHAVTQYRVIESSHGFTWLELSPLTGRKHQLR 354

Query: 421 VHCAEALGTPIVGDYKYGWKAHRNLEPMPCVQPKVEHDE-------LPFGLESGGGSISD 263
           VHCAE LGTPIVGDYKY W+AHRN + +P    +   +E       LPF L+   G IS+
Sbjct: 355 VHCAEVLGTPIVGDYKYAWQAHRNWKQLPWSNIEDNSNEKSRSEKILPFALDLDSGGISE 414

Query: 262 KQPRLHLHCREMILPNIATAXXXXXXXXXXXXXXXXXXXXDFVAPVPSYMKESWEIL 92
           K PRLHLHC++M+LP+++ A                     F AP+P YMK SW+IL
Sbjct: 415 KHPRLHLHCKQMVLPDVSKA--LQDVHLSSDYDFSQLASLKFDAPLPPYMKRSWDIL 469


>ref|XP_010271251.1| PREDICTED: RNA pseudouridine synthase 4, mitochondrial-like isoform
           X1 [Nelumbo nucifera]
          Length = 472

 Score =  259 bits (663), Expect = 1e-66
 Identities = 135/236 (57%), Positives = 169/236 (71%), Gaps = 7/236 (2%)
 Frame = -2

Query: 778 ESSGILVMGRTQTSASILHTIFREKTSGVGVDDIESIQRALQKKYWALVIGTPRLSKGRI 599
           +SSGILVMGRTQTSA+ILH+IFREKT G  ++D + +   LQ++YWALVIGTP+ + G I
Sbjct: 239 DSSGILVMGRTQTSATILHSIFREKTFGASINDNDKM--ILQRRYWALVIGTPKRANGLI 296

Query: 598 PAPLAKIVLEDGKSDRITI-ARDESTPSQHALTEYKVIRS-AHGYTWLELRPLTGRKHQL 425
            APL K+VL+DGKS+R+T+     +  SQHA+T+Y+V++S AHGYTWLEL PLTGRKHQL
Sbjct: 297 SAPLGKVVLDDGKSERMTVDTNGNAISSQHAVTKYQVMKSSAHGYTWLELCPLTGRKHQL 356

Query: 424 RVHCAEALGTPIVGDYKYGWKAHRNLEPMPCVQPK-----VEHDELPFGLESGGGSISDK 260
           RVHCAE LGTPIVGDYKYGW+AHR  +P+    P+         E PFGL+S GGSI++K
Sbjct: 357 RVHCAEVLGTPIVGDYKYGWQAHRKWKPLSWSNPQKNKKLPRSKESPFGLDSEGGSIAEK 416

Query: 259 QPRLHLHCREMILPNIATAXXXXXXXXXXXXXXXXXXXXDFVAPVPSYMKESWEIL 92
           QP LHLHCR+MI PNIA A                    + VAP+P +M+ SW IL
Sbjct: 417 QPHLHLHCRQMIFPNIALA--LQHLQSSSNCDLSELESLNLVAPLPPHMQRSWGIL 470


>ref|XP_009805028.1| PREDICTED: RNA pseudouridine synthase 4, mitochondrial isoform X2
           [Nicotiana sylvestris]
          Length = 481

 Score =  259 bits (661), Expect = 2e-66
 Identities = 136/239 (56%), Positives = 165/239 (69%), Gaps = 9/239 (3%)
 Frame = -2

Query: 778 ESSGILVMGRTQTSASILHTIFREKTSGVGVDDIESIQRALQKKYWALVIGTPRLSKGRI 599
           + SGILVMGRTQ SAS+LH++FREKT G   +D+ES +R LQK+YWALVIG PR SKG I
Sbjct: 244 DCSGILVMGRTQLSASVLHSVFREKTFGTQTEDLESKKRVLQKRYWALVIGCPRRSKGLI 303

Query: 598 PAPLAKIVLEDGKSDRITIARDESTPS-QHALTEYKVIRSAH-GYTWLELRPLTGRKHQL 425
             PL K+VL++GKS+RITI  D   PS Q A+TEY++I S+  GYTWLEL PLTGRKHQL
Sbjct: 304 SVPLGKVVLDNGKSERITIMSDVREPSAQFAVTEYRIIGSSEKGYTWLELSPLTGRKHQL 363

Query: 424 RVHCAEALGTPIVGDYKYGWKAHRNLEPMPCVQPKV-------EHDELPFGLESGGGSIS 266
           RVHCAE LGTPIVGDYKYGW+AHR L+ +      V       E +  PF L  G GSIS
Sbjct: 364 RVHCAEVLGTPIVGDYKYGWQAHRKLKHLSSSTSIVNLGARILEQEADPFSLRLGNGSIS 423

Query: 265 DKQPRLHLHCREMILPNIATAXXXXXXXXXXXXXXXXXXXXDFVAPVPSYMKESWEILN 89
           DKQP LHLHC+EM+LPN + A                      VAP+PS+M++SW+ L+
Sbjct: 424 DKQPHLHLHCKEMVLPNFSLA--LQQARVVSGADLVHVESIKLVAPLPSHMQKSWDCLS 480


>ref|XP_009805027.1| PREDICTED: RNA pseudouridine synthase 4, mitochondrial isoform X1
           [Nicotiana sylvestris]
          Length = 496

 Score =  259 bits (661), Expect = 2e-66
 Identities = 136/239 (56%), Positives = 165/239 (69%), Gaps = 9/239 (3%)
 Frame = -2

Query: 778 ESSGILVMGRTQTSASILHTIFREKTSGVGVDDIESIQRALQKKYWALVIGTPRLSKGRI 599
           + SGILVMGRTQ SAS+LH++FREKT G   +D+ES +R LQK+YWALVIG PR SKG I
Sbjct: 259 DCSGILVMGRTQLSASVLHSVFREKTFGTQTEDLESKKRVLQKRYWALVIGCPRRSKGLI 318

Query: 598 PAPLAKIVLEDGKSDRITIARDESTPS-QHALTEYKVIRSAH-GYTWLELRPLTGRKHQL 425
             PL K+VL++GKS+RITI  D   PS Q A+TEY++I S+  GYTWLEL PLTGRKHQL
Sbjct: 319 SVPLGKVVLDNGKSERITIMSDVREPSAQFAVTEYRIIGSSEKGYTWLELSPLTGRKHQL 378

Query: 424 RVHCAEALGTPIVGDYKYGWKAHRNLEPMPCVQPKV-------EHDELPFGLESGGGSIS 266
           RVHCAE LGTPIVGDYKYGW+AHR L+ +      V       E +  PF L  G GSIS
Sbjct: 379 RVHCAEVLGTPIVGDYKYGWQAHRKLKHLSSSTSIVNLGARILEQEADPFSLRLGNGSIS 438

Query: 265 DKQPRLHLHCREMILPNIATAXXXXXXXXXXXXXXXXXXXXDFVAPVPSYMKESWEILN 89
           DKQP LHLHC+EM+LPN + A                      VAP+PS+M++SW+ L+
Sbjct: 439 DKQPHLHLHCKEMVLPNFSLA--LQQARVVSGADLVHVESIKLVAPLPSHMQKSWDCLS 495


>ref|XP_011624446.1| PREDICTED: RNA pseudouridine synthase 4, mitochondrial [Amborella
           trichopoda]
          Length = 450

 Score =  258 bits (660), Expect = 2e-66
 Identities = 129/233 (55%), Positives = 172/233 (73%), Gaps = 3/233 (1%)
 Frame = -2

Query: 778 ESSGILVMGRTQTSASILHTIFREKTSGVGVDDIESIQRALQKKYWALVIGTPRLSKGRI 599
           +SSGILVMGRTQ S ++LH+IFR+KT G   +DI++ +  L++KYWALVIG P+ S+G I
Sbjct: 216 DSSGILVMGRTQESTTLLHSIFRDKTCGASFNDIKNSKIILKRKYWALVIGNPQPSEGLI 275

Query: 598 PAPLAKIVLEDGKSDRITIARDESTPS-QHALTEYKVIRSA-HGYTWLELRPLTGRKHQL 425
            APL+K++L+DGKS+RIT++ D    S +HA+TEY+V+RS+ HG+TWLEL P TGRKHQL
Sbjct: 276 SAPLSKLLLDDGKSERITVSEDSKNKSARHAITEYRVLRSSGHGFTWLELYPRTGRKHQL 335

Query: 424 RVHCAEALGTPIVGDYKYGWKAHRNLEPMPCVQPKVE-HDELPFGLESGGGSISDKQPRL 248
           RVHCAE LGTPI+GDYKYGW AHR  +P P ++ +   + + PFGL+  GGS+SDK+PRL
Sbjct: 336 RVHCAEVLGTPILGDYKYGWNAHRKWKPFPTLKFEERLNRKAPFGLDLEGGSVSDKKPRL 395

Query: 247 HLHCREMILPNIATAXXXXXXXXXXXXXXXXXXXXDFVAPVPSYMKESWEILN 89
           HLHCR+M LPN++ A                    D VAP+P +M+ SW+ILN
Sbjct: 396 HLHCRQMTLPNMSLA--FQHLHEQSVDDLSKLEKLDLVAPLPLHMRRSWDILN 446


>ref|XP_007199809.1| hypothetical protein PRUPE_ppa004969mg [Prunus persica]
           gi|462395209|gb|EMJ01008.1| hypothetical protein
           PRUPE_ppa004969mg [Prunus persica]
          Length = 481

 Score =  258 bits (660), Expect = 2e-66
 Identities = 134/238 (56%), Positives = 164/238 (68%), Gaps = 8/238 (3%)
 Frame = -2

Query: 778 ESSGILVMGRTQTSASILHTIFREKTSGVGVDDIESIQRALQKKYWALVIGTPRLSKGRI 599
           +SSGILVMGRTQTSA++LH+IFREKT G   D+I+  +R LQ++YWALVIG+PR  KG I
Sbjct: 246 DSSGILVMGRTQTSATVLHSIFREKTFGASNDEIDDAKRILQRRYWALVIGSPRQRKGLI 305

Query: 598 PAPLAKIVLEDGKSDRITIARDEST-PSQHALTEYKVIRSAHGYTWLELRPLTGRKHQLR 422
            APL K+V+++GKSDRITI  D  T PSQHA+T+YKVI S   YTWLEL PLTGRKHQLR
Sbjct: 306 SAPLGKVVVDNGKSDRITIVNDSQTLPSQHAITKYKVIGSP-CYTWLELTPLTGRKHQLR 364

Query: 421 VHCAEALGTPIVGDYKYGWKAHRNLEPMPCVQPKVEHDE-------LPFGLESGGGSISD 263
           VHCAE L TPIVGDYKYGW+ HRN +P+     +   DE       LPF L    GS+S+
Sbjct: 365 VHCAEVLRTPIVGDYKYGWQTHRNWKPLAWSNNECHSDEEFPKRKNLPFDLNMESGSVSE 424

Query: 262 KQPRLHLHCREMILPNIATAXXXXXXXXXXXXXXXXXXXXDFVAPVPSYMKESWEILN 89
           K PRLHLHC++M+LPN+  A                    + VA +PS+M+ SW I N
Sbjct: 425 KNPRLHLHCKQMVLPNVNLA--LQNVKLHSDSDLSELESLELVAALPSFMQRSWNITN 480


>ref|XP_002313876.2| hypothetical protein POPTR_0009s09860g [Populus trichocarpa]
           gi|550331407|gb|EEE87831.2| hypothetical protein
           POPTR_0009s09860g [Populus trichocarpa]
          Length = 471

 Score =  258 bits (659), Expect = 3e-66
 Identities = 129/237 (54%), Positives = 167/237 (70%), Gaps = 8/237 (3%)
 Frame = -2

Query: 778 ESSGILVMGRTQTSASILHTIFREKTSGVGVDDIESIQRALQKKYWALVIGTPRLSKGRI 599
           + SGILVMGRTQTSA++LH IFREKT     DD+ + +R LQ+KYWALVIG+PR  KG I
Sbjct: 235 DCSGILVMGRTQTSATVLHAIFREKTLAASNDDVGNKRRILQRKYWALVIGSPRRPKGLI 294

Query: 598 PAPLAKIVLEDGKSDRITIARD-ESTPSQHALTEYKVIRSAHGYTWLELRPLTGRKHQLR 422
            APL K+V+++GKSDRIT+  + ++  SQHA+T+Y+VI S+HG+TWLEL PLTGRKHQLR
Sbjct: 295 SAPLGKVVVDNGKSDRITVVENSQNLSSQHAVTQYRVIESSHGFTWLELSPLTGRKHQLR 354

Query: 421 VHCAEALGTPIVGDYKYGWKAHRNLEPMPCVQPKVEHDE-------LPFGLESGGGSISD 263
           VHCAE LGTPIVGDYKY W+AHRN + +     +   ++       LPF L+   GSIS+
Sbjct: 355 VHCAEVLGTPIVGDYKYAWQAHRNWKQLQWSNIEDNSNDKSLSEKILPFALDLDSGSISE 414

Query: 262 KQPRLHLHCREMILPNIATAXXXXXXXXXXXXXXXXXXXXDFVAPVPSYMKESWEIL 92
           K PRLHLHC++M+LP+++ A                     F AP+P YMK+SW+IL
Sbjct: 415 KHPRLHLHCKQMVLPDVSKA--LQDVQLSSDYDFSQLASLKFDAPLPPYMKKSWDIL 469


>ref|XP_012450617.1| PREDICTED: RNA pseudouridine synthase 4, mitochondrial [Gossypium
           raimondii] gi|763744841|gb|KJB12280.1| hypothetical
           protein B456_002G009500 [Gossypium raimondii]
          Length = 479

 Score =  256 bits (655), Expect = 9e-66
 Identities = 134/240 (55%), Positives = 165/240 (68%), Gaps = 10/240 (4%)
 Frame = -2

Query: 778 ESSGILVMGRTQTSASILHTIFREKTSGVGVDDIESIQRALQKKYWALVIGTPRLSKGRI 599
           + SGILVMGRTQ SA+ILH++FRE+T G    D ++ +R LQK+YWALVIG+PR  KG I
Sbjct: 241 DCSGILVMGRTQMSAAILHSVFREETLGASKHDSDNEKRVLQKRYWALVIGSPRRPKGTI 300

Query: 598 PAPLAKIVLEDGKSDRITIARDEST--PSQHALTEYKVIR-SAHGYTWLELRPLTGRKHQ 428
            APL K+V++DGKSDRIT+    +T   SQ A+TEY+VI+ S HG+TWLEL PLTGRKHQ
Sbjct: 301 SAPLRKVVVDDGKSDRITVFEHNNTILSSQRAITEYRVIKTSTHGFTWLELSPLTGRKHQ 360

Query: 427 LRVHCAEALGTPIVGDYKYGWKAHRNLEPMPCVQPKVEHDE-------LPFGLESGGGSI 269
           LRVHCAE LGTPIVGDYKYGW+AHR  + +     +   +E       LPFGL    GSI
Sbjct: 361 LRVHCAEVLGTPIVGDYKYGWQAHRRFQNLAESDLRKNSNEKVAKENMLPFGLNMDSGSI 420

Query: 268 SDKQPRLHLHCREMILPNIATAXXXXXXXXXXXXXXXXXXXXDFVAPVPSYMKESWEILN 89
           S+K  RLHLHCREMILPN++                        VAP+PSYM++SW+ILN
Sbjct: 421 SEKHLRLHLHCREMILPNVSQV--LRNPKSFTDDDLSKLKSLKIVAPLPSYMQKSWDILN 478


>ref|XP_009629273.1| PREDICTED: RNA pseudouridine synthase 4, mitochondrial isoform X2
           [Nicotiana tomentosiformis]
          Length = 357

 Score =  256 bits (654), Expect = 1e-65
 Identities = 137/238 (57%), Positives = 165/238 (69%), Gaps = 9/238 (3%)
 Frame = -2

Query: 778 ESSGILVMGRTQTSASILHTIFREKTSGVGVDDIESIQRALQKKYWALVIGTPRLSKGRI 599
           + SGILVMGRTQ SAS+LH++FREKT G   +D+ES +R LQK+YWALVIG PR SKG I
Sbjct: 120 DCSGILVMGRTQLSASVLHSVFREKTFGTQTEDLESKKRVLQKRYWALVIGCPRRSKGVI 179

Query: 598 PAPLAKIVLEDGKSDRITIARDESTPS-QHALTEYKVIRSAH-GYTWLELRPLTGRKHQL 425
             PLAK+VL++GKS+RITI  D   PS Q A+TEY++I S+  GYTWLEL PLTGRKHQL
Sbjct: 180 SVPLAKVVLDNGKSERITIMSDVREPSAQFAVTEYRIIGSSEKGYTWLELSPLTGRKHQL 239

Query: 424 RVHCAEALGTPIVGDYKYGWKAHRNLEPMPCVQPKV-------EHDELPFGLESGGGSIS 266
           RVHCAE LGTPIVGDYKYGW+AHR L+ +      V       E +  PF L  G GSIS
Sbjct: 240 RVHCAEVLGTPIVGDYKYGWQAHRKLKHLSSSISTVNLGARIPEQEADPFSLCLGNGSIS 299

Query: 265 DKQPRLHLHCREMILPNIATAXXXXXXXXXXXXXXXXXXXXDFVAPVPSYMKESWEIL 92
           DKQP LHLHC+EM+LPNI+ A                      VA +PS+M++SW+ L
Sbjct: 300 DKQPHLHLHCKEMVLPNISLA--LQQARVVSGADLIDVESIKLVAHLPSHMQKSWDCL 355


>ref|XP_009629272.1| PREDICTED: RNA pseudouridine synthase 4, mitochondrial isoform X1
           [Nicotiana tomentosiformis]
          Length = 464

 Score =  256 bits (654), Expect = 1e-65
 Identities = 137/238 (57%), Positives = 165/238 (69%), Gaps = 9/238 (3%)
 Frame = -2

Query: 778 ESSGILVMGRTQTSASILHTIFREKTSGVGVDDIESIQRALQKKYWALVIGTPRLSKGRI 599
           + SGILVMGRTQ SAS+LH++FREKT G   +D+ES +R LQK+YWALVIG PR SKG I
Sbjct: 227 DCSGILVMGRTQLSASVLHSVFREKTFGTQTEDLESKKRVLQKRYWALVIGCPRRSKGVI 286

Query: 598 PAPLAKIVLEDGKSDRITIARDESTPS-QHALTEYKVIRSAH-GYTWLELRPLTGRKHQL 425
             PLAK+VL++GKS+RITI  D   PS Q A+TEY++I S+  GYTWLEL PLTGRKHQL
Sbjct: 287 SVPLAKVVLDNGKSERITIMSDVREPSAQFAVTEYRIIGSSEKGYTWLELSPLTGRKHQL 346

Query: 424 RVHCAEALGTPIVGDYKYGWKAHRNLEPMPCVQPKV-------EHDELPFGLESGGGSIS 266
           RVHCAE LGTPIVGDYKYGW+AHR L+ +      V       E +  PF L  G GSIS
Sbjct: 347 RVHCAEVLGTPIVGDYKYGWQAHRKLKHLSSSISTVNLGARIPEQEADPFSLCLGNGSIS 406

Query: 265 DKQPRLHLHCREMILPNIATAXXXXXXXXXXXXXXXXXXXXDFVAPVPSYMKESWEIL 92
           DKQP LHLHC+EM+LPNI+ A                      VA +PS+M++SW+ L
Sbjct: 407 DKQPHLHLHCKEMVLPNISLA--LQQARVVSGADLIDVESIKLVAHLPSHMQKSWDCL 462