BLASTX nr result
ID: Ophiopogon21_contig00012727
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Ophiopogon21_contig00012727
(722 letters)
Database: ./nr
77,306,371 sequences; 28,104,191,420 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_010907040.1| PREDICTED: RNA polymerase sigma factor sigF,... 120 1e-24
ref|XP_009384040.1| PREDICTED: RNA polymerase sigma factor sigF,... 108 5e-21
ref|XP_010241844.1| PREDICTED: RNA polymerase sigma factor sigF,... 93 2e-16
ref|XP_010241845.1| PREDICTED: RNA polymerase sigma factor sigF,... 90 2e-15
ref|XP_010241843.1| PREDICTED: RNA polymerase sigma factor sigF,... 90 2e-15
ref|XP_010653602.1| PREDICTED: RNA polymerase sigma factor sigF,... 85 4e-14
emb|CBI32760.3| unnamed protein product [Vitis vinifera] 85 4e-14
ref|XP_011624483.1| PREDICTED: RNA polymerase sigma factor sigF,... 83 2e-13
gb|ERM94834.1| hypothetical protein AMTR_s00009p00072720 [Ambore... 82 3e-13
ref|XP_008779218.1| PREDICTED: RNA polymerase sigma factor sigF,... 80 2e-12
ref|XP_010241846.1| PREDICTED: RNA polymerase sigma factor sigF,... 79 3e-12
ref|XP_009376811.1| PREDICTED: RNA polymerase sigma factor sigF,... 70 2e-09
ref|XP_009376812.1| PREDICTED: RNA polymerase sigma factor sigF,... 69 2e-09
ref|XP_011018728.1| PREDICTED: RNA polymerase sigma factor sigF,... 68 5e-09
ref|XP_011018731.1| PREDICTED: RNA polymerase sigma factor sigF,... 68 7e-09
ref|XP_008807705.1| PREDICTED: uncharacterized protein LOC103719... 67 2e-08
ref|XP_008807704.1| PREDICTED: RNA polymerase sigma factor sigF,... 66 2e-08
ref|XP_010529716.1| PREDICTED: RNA polymerase sigma factor sigF,... 65 6e-08
ref|XP_010529715.1| PREDICTED: RNA polymerase sigma factor sigF,... 65 6e-08
gb|KJB62408.1| hypothetical protein B456_009G415400 [Gossypium r... 64 8e-08
>ref|XP_010907040.1| PREDICTED: RNA polymerase sigma factor sigF, chloroplastic [Elaeis
guineensis]
Length = 570
Score = 120 bits (300), Expect = 1e-24
Identities = 80/191 (41%), Positives = 108/191 (56%), Gaps = 4/191 (2%)
Frame = -2
Query: 562 MLHDQASRPITSLPTTSLARQFPSSVLPHEPQNDYKTRIINGEKVVKHDGV----GLPLC 395
MLHDQAS TS+PTT +A FP SVL HE +DYKT I+ E+ D G
Sbjct: 30 MLHDQASWTNTSVPTTPIACHFPISVLSHEQHDDYKTNCISKEEKNVQDNQQVRSGRSCY 89
Query: 394 EEREKQKFDEYLKYFERRLLYQPGVWYLFTAPRSGENKYLXXXXXXXXXXXXXXSGSKQI 215
EE+EK +F +YL+Y +++LLY WY F + + E L SK +
Sbjct: 90 EEKEKCEFAQYLRYSKQQLLYHQVFWYPFLSLYTEEKTPLAMAVEPIKSD------SKGV 143
Query: 214 LVEQTTSSSVQPGDVLALAKRAVMASRKAALLAEKSNILEFEFGQPPLLGLDLNGFTQEI 35
+E + V+P +VLALAKRA+MASRKAA L E+SNIL EF + L L+ G T +I
Sbjct: 144 QLENC-ADFVRPTEVLALAKRAMMASRKAASLMEESNILAAEFDESHFLSLNHRGSTVDI 202
Query: 34 VLEDETMIRSK 2
+++ +RSK
Sbjct: 203 SIKEVMAVRSK 213
>ref|XP_009384040.1| PREDICTED: RNA polymerase sigma factor sigF, chloroplastic [Musa
acuminata subsp. malaccensis]
Length = 577
Score = 108 bits (269), Expect = 5e-21
Identities = 72/194 (37%), Positives = 100/194 (51%), Gaps = 7/194 (3%)
Frame = -2
Query: 562 MLHDQASRPITSLPTTSLARQFPSSVLPHEPQNDYKTRIING-EKVVKHDG------VGL 404
ML DQAS+P+ +P T + +SVL E +D KT +N EK V+ G
Sbjct: 31 MLLDQASQPMIHVPATQVVHHITASVLSKEQCDDLKTNHLNKVEKSVQATPDKWLTEAGR 90
Query: 403 PLCEEREKQKFDEYLKYFERRLLYQPGVWYLFTAPRSGENKYLXXXXXXXXXXXXXXSGS 224
EEREK +F++YL+Y E +L YQP +WY F P E K SG
Sbjct: 91 SCSEEREKHEFNQYLRYLECQLSYQPSLWYPF--PPLDEEKQSLPVSVGPEETSTCVSGD 148
Query: 223 KQILVEQTTSSSVQPGDVLALAKRAVMASRKAALLAEKSNILEFEFGQPPLLGLDLNGFT 44
+ + T + P DVLALAK+A++AS+ AA L E+SNIL E + LG D G
Sbjct: 149 SSAMQVENTKDCITPADVLALAKKAMIASKIAASLVEQSNILGIEVDKSNFLGFD-EGSN 207
Query: 43 QEIVLEDETMIRSK 2
+ ++ET +RS+
Sbjct: 208 DDTFFKEETTVRSR 221
>ref|XP_010241844.1| PREDICTED: RNA polymerase sigma factor sigF, chloroplastic isoform
X2 [Nelumbo nucifera]
Length = 565
Score = 92.8 bits (229), Expect = 2e-16
Identities = 69/213 (32%), Positives = 110/213 (51%), Gaps = 16/213 (7%)
Frame = -2
Query: 592 QPKHCRATLLMLHDQASRPITSLPTTSLARQFPSSVLPHEPQNDYK--TRIINGEKVVK- 422
Q K+ +++ +LH+QA+ + S+PTTS+ R FP+SVL E ++D + +II +K +
Sbjct: 19 QLKNSSSSVTLLHEQANPIVVSMPTTSITRHFPASVLLQEQRDDIRPFLQIIREDKTSQA 78
Query: 421 -------HDGVGLPLCEEREKQKFDEYLKYFERRLLYQPGVWYLFTAPRSGENKYLXXXX 263
D V L EE++ + D Y + FER+LLY PG+WYL + GE L
Sbjct: 79 MLDRRKLEDKV--HLYEEKKSCQPDRYWEGFERQLLYWPGLWYLLPSLYKGEKPLLS--- 133
Query: 262 XXXXXXXXXXSGSKQILVEQTTSS------SVQPGDVLALAKRAVMASRKAALLAEKSNI 101
+V Q+T++ V+P D L LAK+AV+AS++AA LA+ +
Sbjct: 134 ----------------MVTQSTAAGTVKNVDVRPCDALELAKKAVLASKQAASLAKDYEL 177
Query: 100 LEFEFGQPPLLGLDLNGFTQEIVLEDETMIRSK 2
+ + L L+ +I L +E +RSK
Sbjct: 178 FGADSHESFLPDLEPRNLANKIPLREEVAVRSK 210
>ref|XP_010241845.1| PREDICTED: RNA polymerase sigma factor sigF, chloroplastic isoform
X3 [Nelumbo nucifera]
Length = 540
Score = 89.7 bits (221), Expect = 2e-15
Identities = 67/203 (33%), Positives = 104/203 (51%), Gaps = 16/203 (7%)
Frame = -2
Query: 562 MLHDQASRPITSLPTTSLARQFPSSVLPHEPQNDYK--TRIINGEKVVK--------HDG 413
+LH+QA+ + S+PTTS+ R FP+SVL E ++D + +II +K + D
Sbjct: 4 LLHEQANPIVVSMPTTSITRHFPASVLLQEQRDDIRPFLQIIREDKTSQAMLDRRKLEDK 63
Query: 412 VGLPLCEEREKQKFDEYLKYFERRLLYQPGVWYLFTAPRSGENKYLXXXXXXXXXXXXXX 233
V L EE++ + D Y + FER+LLY PG+WYL + GE L
Sbjct: 64 V--HLYEEKKSCQPDRYWEGFERQLLYWPGLWYLLPSLYKGEKPLLS------------- 108
Query: 232 SGSKQILVEQTTSS------SVQPGDVLALAKRAVMASRKAALLAEKSNILEFEFGQPPL 71
+V Q+T++ V+P D L LAK+AV+AS++AA LA+ + + + L
Sbjct: 109 ------MVTQSTAAGTVKNVDVRPCDALELAKKAVLASKQAASLAKDYELFGADSHESFL 162
Query: 70 LGLDLNGFTQEIVLEDETMIRSK 2
L+ +I L +E +RSK
Sbjct: 163 PDLEPRNLANKIPLREEVAVRSK 185
>ref|XP_010241843.1| PREDICTED: RNA polymerase sigma factor sigF, chloroplastic isoform
X1 [Nelumbo nucifera]
Length = 568
Score = 89.7 bits (221), Expect = 2e-15
Identities = 67/203 (33%), Positives = 104/203 (51%), Gaps = 16/203 (7%)
Frame = -2
Query: 562 MLHDQASRPITSLPTTSLARQFPSSVLPHEPQNDYK--TRIINGEKVVK--------HDG 413
+LH+QA+ + S+PTTS+ R FP+SVL E ++D + +II +K + D
Sbjct: 32 LLHEQANPIVVSMPTTSITRHFPASVLLQEQRDDIRPFLQIIREDKTSQAMLDRRKLEDK 91
Query: 412 VGLPLCEEREKQKFDEYLKYFERRLLYQPGVWYLFTAPRSGENKYLXXXXXXXXXXXXXX 233
V L EE++ + D Y + FER+LLY PG+WYL + GE L
Sbjct: 92 V--HLYEEKKSCQPDRYWEGFERQLLYWPGLWYLLPSLYKGEKPLLS------------- 136
Query: 232 SGSKQILVEQTTSS------SVQPGDVLALAKRAVMASRKAALLAEKSNILEFEFGQPPL 71
+V Q+T++ V+P D L LAK+AV+AS++AA LA+ + + + L
Sbjct: 137 ------MVTQSTAAGTVKNVDVRPCDALELAKKAVLASKQAASLAKDYELFGADSHESFL 190
Query: 70 LGLDLNGFTQEIVLEDETMIRSK 2
L+ +I L +E +RSK
Sbjct: 191 PDLEPRNLANKIPLREEVAVRSK 213
>ref|XP_010653602.1| PREDICTED: RNA polymerase sigma factor sigF, chloroplastic [Vitis
vinifera]
Length = 567
Score = 85.1 bits (209), Expect = 4e-14
Identities = 58/183 (31%), Positives = 95/183 (51%), Gaps = 9/183 (4%)
Frame = -2
Query: 586 KHCRATLLMLHDQASRPITSLPTTSLARQFPSSVLPHEPQNDYKT--RIINGEKVV---- 425
++ +++LMLHDQ + + S+PTT +AR+FP+SVL E +++Y+ + + E+
Sbjct: 27 RNSSSSVLMLHDQVAPAVASIPTT-IARKFPTSVLLQEQRDEYRPFPQALKDERTFQATL 85
Query: 424 -KHDGVGLPLCEEREKQKFDEYLKYFERRLLYQPGVWYLFTAPRSGENKYLXXXXXXXXX 248
K + +E ++Y+ FER+LL QPG+WY + ++GE
Sbjct: 86 EKRQMEIVVSADEENSDDHNQYMVNFERQLLLQPGLWYSLPSSQTGEKSPFSSSI----- 140
Query: 247 XXXXXSGSKQILVEQTTSSSVQPGDVLALAKRAVMASRKAALLAEKSNIL--EFEFGQPP 74
K I + S V+P DVLALAK+A+ AS++A L E + +L + E P
Sbjct: 141 -------MKSITTDIENSMDVKPCDVLALAKKALSASKQAVSLYENAKLLGADLEDSPSP 193
Query: 73 LLG 65
LG
Sbjct: 194 SLG 196
>emb|CBI32760.3| unnamed protein product [Vitis vinifera]
Length = 561
Score = 85.1 bits (209), Expect = 4e-14
Identities = 58/183 (31%), Positives = 95/183 (51%), Gaps = 9/183 (4%)
Frame = -2
Query: 586 KHCRATLLMLHDQASRPITSLPTTSLARQFPSSVLPHEPQNDYKT--RIINGEKVV---- 425
++ +++LMLHDQ + + S+PTT +AR+FP+SVL E +++Y+ + + E+
Sbjct: 21 RNSSSSVLMLHDQVAPAVASIPTT-IARKFPTSVLLQEQRDEYRPFPQALKDERTFQATL 79
Query: 424 -KHDGVGLPLCEEREKQKFDEYLKYFERRLLYQPGVWYLFTAPRSGENKYLXXXXXXXXX 248
K + +E ++Y+ FER+LL QPG+WY + ++GE
Sbjct: 80 EKRQMEIVVSADEENSDDHNQYMVNFERQLLLQPGLWYSLPSSQTGEKSPFSSSI----- 134
Query: 247 XXXXXSGSKQILVEQTTSSSVQPGDVLALAKRAVMASRKAALLAEKSNIL--EFEFGQPP 74
K I + S V+P DVLALAK+A+ AS++A L E + +L + E P
Sbjct: 135 -------MKSITTDIENSMDVKPCDVLALAKKALSASKQAVSLYENAKLLGADLEDSPSP 187
Query: 73 LLG 65
LG
Sbjct: 188 SLG 190
>ref|XP_011624483.1| PREDICTED: RNA polymerase sigma factor sigF, chloroplastic
[Amborella trichopoda]
Length = 581
Score = 82.8 bits (203), Expect = 2e-13
Identities = 61/185 (32%), Positives = 93/185 (50%), Gaps = 15/185 (8%)
Frame = -2
Query: 610 SGRMAMQPKHCR---ATLLMLHDQASRPITSLPTTSLARQFPSSVLPHEPQNDYKT---- 452
+ ++ ++P H +++L DQA T L TTS R FP+SV+ HE ++D ++
Sbjct: 14 ASKILVRPIHTAPPSSSVLTSPDQAPLTATMLSTTSAVRHFPASVVLHEQRDDLRSPTSS 73
Query: 451 --------RIINGEKVVKHDGVGLPLCEEREKQKFDEYLKYFERRLLYQPGVWYLFTAPR 296
+++ + + +G E + + D+YLK FER+LLY P +WYL + R
Sbjct: 74 PKEDKAYQEVMDRARTEVYASIGA----ETKNFEIDQYLKDFERQLLYWPALWYL-SPSR 128
Query: 295 SGENKYLXXXXXXXXXXXXXXSGSKQILVEQTTSSSVQPGDVLALAKRAVMASRKAALLA 116
L S K+ +QT SS+ P DVL LAKRAVMAS+ AA L
Sbjct: 129 ILPKSLLSLPFQCKPLETDIESEIKESRKKQTNCSSLNPMDVLVLAKRAVMASKAAAALV 188
Query: 115 EKSNI 101
E S++
Sbjct: 189 EHSDL 193
>gb|ERM94834.1| hypothetical protein AMTR_s00009p00072720 [Amborella trichopoda]
Length = 573
Score = 82.0 bits (201), Expect = 3e-13
Identities = 59/168 (35%), Positives = 84/168 (50%), Gaps = 12/168 (7%)
Frame = -2
Query: 568 LLMLHDQASRPITSLPTTSLARQFPSSVLPHEPQNDYKT------------RIINGEKVV 425
+L DQA T L TTS R FP+SV+ HE ++D ++ +++ +
Sbjct: 23 ILTSPDQAPLTATMLSTTSAVRHFPASVVLHEQRDDLRSPTSSPKEDKAYQEVMDRARTE 82
Query: 424 KHDGVGLPLCEEREKQKFDEYLKYFERRLLYQPGVWYLFTAPRSGENKYLXXXXXXXXXX 245
+ +G E + + D+YLK FER+LLY P +WYL + R L
Sbjct: 83 VYASIGA----ETKNFEIDQYLKDFERQLLYWPALWYL-SPSRILPKSLLSLPFQCKPLE 137
Query: 244 XXXXSGSKQILVEQTTSSSVQPGDVLALAKRAVMASRKAALLAEKSNI 101
S K+ +QT SS+ P DVL LAKRAVMAS+ AA L E S++
Sbjct: 138 TDIESEIKESRKKQTNCSSLNPMDVLVLAKRAVMASKAAAALVEHSDL 185
>ref|XP_008779218.1| PREDICTED: RNA polymerase sigma factor sigF, chloroplastic-like
[Phoenix dactylifera]
Length = 529
Score = 79.7 bits (195), Expect = 2e-12
Identities = 49/131 (37%), Positives = 72/131 (54%)
Frame = -2
Query: 394 EEREKQKFDEYLKYFERRLLYQPGVWYLFTAPRSGENKYLXXXXXXXXXXXXXXSGSKQI 215
+E+ K + + L+YFE +LLY WY F + + E L ++
Sbjct: 50 KEKAKCEVAQCLRYFEHQLLYHQVFWYPFLSLYTEEKTPLAMSTEPIK-------SDSKL 102
Query: 214 LVEQTTSSSVQPGDVLALAKRAVMASRKAALLAEKSNILEFEFGQPPLLGLDLNGFTQEI 35
+ + + V+P DVLALAKRA+ ASRKAA L E+SNIL EF + LGL+ G T +I
Sbjct: 103 VPLENCADFVRPADVLALAKRAMRASRKAASLMEESNILAAEFDESHFLGLNHRGSTMDI 162
Query: 34 VLEDETMIRSK 2
+++E +RSK
Sbjct: 163 SIKEEVAVRSK 173
>ref|XP_010241846.1| PREDICTED: RNA polymerase sigma factor sigF, chloroplastic isoform
X4 [Nelumbo nucifera]
Length = 525
Score = 79.0 bits (193), Expect = 3e-12
Identities = 62/191 (32%), Positives = 95/191 (49%), Gaps = 16/191 (8%)
Frame = -2
Query: 526 LPTTSLARQFPSSVLPHEPQNDYKT--RIINGEKVVK--------HDGVGLPLCEEREKQ 377
+PTTS+ R FP+SVL E ++D + +II +K + D V L EE++
Sbjct: 1 MPTTSITRHFPASVLLQEQRDDIRPFLQIIREDKTSQAMLDRRKLEDKVHL--YEEKKSC 58
Query: 376 KFDEYLKYFERRLLYQPGVWYLFTAPRSGENKYLXXXXXXXXXXXXXXSGSKQILVEQTT 197
+ D Y + FER+LLY PG+WYL + GE L +V Q+T
Sbjct: 59 QPDRYWEGFERQLLYWPGLWYLLPSLYKGEKPLLS-------------------MVTQST 99
Query: 196 SS------SVQPGDVLALAKRAVMASRKAALLAEKSNILEFEFGQPPLLGLDLNGFTQEI 35
++ V+P D L LAK+AV+AS++AA LA+ + + + L L+ +I
Sbjct: 100 AAGTVKNVDVRPCDALELAKKAVLASKQAASLAKDYELFGADSHESFLPDLEPRNLANKI 159
Query: 34 VLEDETMIRSK 2
L +E +RSK
Sbjct: 160 PLREEVAVRSK 170
>ref|XP_009376811.1| PREDICTED: RNA polymerase sigma factor sigF, chloroplastic isoform
X1 [Pyrus x bretschneideri]
Length = 610
Score = 69.7 bits (169), Expect = 2e-09
Identities = 61/220 (27%), Positives = 107/220 (48%), Gaps = 14/220 (6%)
Frame = -2
Query: 622 CMATSGRMAMQPKHCRATLLMLHDQASRPITSLPTTSLARQFPSSVLPHEPQNDYKTRII 443
C + SG+ C +LMLH+QA+ + S+P T +AR FP+SVL E ++++K ++
Sbjct: 58 CWSISGKDYFCSLAC--IVLMLHEQATAAVPSVPITFVARHFPTSVLLQEQRDEFKP-LL 114
Query: 442 NGEKVVKHDGVGL---------PLCEEREKQKFDEYLKYFERRLLYQPGVWYLFTAPRSG 290
+ K K L L E+ + F + +K E +LL + G+ +F++ ++G
Sbjct: 115 HALKEEKTSQATLDRMQIETKASLNEDLDIDGFYQLVKDSEHQLLNRSGLLDVFSSLQTG 174
Query: 289 ENKYLXXXXXXXXXXXXXXSGSKQILVEQTTSSS-----VQPGDVLALAKRAVMASRKAA 125
S + VE T++S ++P D +ALAK+A+ AS++A
Sbjct: 175 VKL------------------SAPLTVEPITTASSKHMDIKPSDAVALAKKALSASKEAV 216
Query: 124 LLAEKSNILEFEFGQPPLLGLDLNGFTQEIVLEDETMIRS 5
A+ S + ++F +GLD ++EDE +RS
Sbjct: 217 SFADGSKSMGYDFDDSLSIGLD------NWLVEDEKTVRS 250
>ref|XP_009376812.1| PREDICTED: RNA polymerase sigma factor sigF, chloroplastic isoform
X2 [Pyrus x bretschneideri]
Length = 573
Score = 69.3 bits (168), Expect = 2e-09
Identities = 57/203 (28%), Positives = 102/203 (50%), Gaps = 14/203 (6%)
Frame = -2
Query: 571 TLLMLHDQASRPITSLPTTSLARQFPSSVLPHEPQNDYKTRIINGEKVVKHDGVGL---- 404
++LMLH+QA+ + S+P T +AR FP+SVL E ++++K +++ K K L
Sbjct: 36 SVLMLHEQATAAVPSVPITFVARHFPTSVLLQEQRDEFKP-LLHALKEEKTSQATLDRMQ 94
Query: 403 -----PLCEEREKQKFDEYLKYFERRLLYQPGVWYLFTAPRSGENKYLXXXXXXXXXXXX 239
L E+ + F + +K E +LL + G+ +F++ ++G
Sbjct: 95 IETKASLNEDLDIDGFYQLVKDSEHQLLNRSGLLDVFSSLQTGVKL-------------- 140
Query: 238 XXSGSKQILVEQTTSSS-----VQPGDVLALAKRAVMASRKAALLAEKSNILEFEFGQPP 74
S + VE T++S ++P D +ALAK+A+ AS++A A+ S + ++F
Sbjct: 141 ----SAPLTVEPITTASSKHMDIKPSDAVALAKKALSASKEAVSFADGSKSMGYDFDDSL 196
Query: 73 LLGLDLNGFTQEIVLEDETMIRS 5
+GLD ++EDE +RS
Sbjct: 197 SIGLD------NWLVEDEKTVRS 213
>ref|XP_011018728.1| PREDICTED: RNA polymerase sigma factor sigF, chloroplastic isoform
X1 [Populus euphratica] gi|743810385|ref|XP_011018729.1|
PREDICTED: RNA polymerase sigma factor sigF,
chloroplastic isoform X1 [Populus euphratica]
gi|743810387|ref|XP_011018730.1| PREDICTED: RNA
polymerase sigma factor sigF, chloroplastic isoform X1
[Populus euphratica]
Length = 570
Score = 68.2 bits (165), Expect = 5e-09
Identities = 52/186 (27%), Positives = 88/186 (47%), Gaps = 26/186 (13%)
Frame = -2
Query: 574 ATLLMLHDQASRPITSLPTTSLARQFPSSVLPHEPQNDY--------------------K 455
+++L+L +QA+ +T++PTTS A+ FP+SVL E ++++ K
Sbjct: 26 SSVLILREQATPAVTAIPTTSTAQHFPTSVLLQEQRDEFRPLQNIFKEDRPSQATLDRRK 85
Query: 454 TRI-INGEKVVKHDGVGLPLCEEREKQKFDEYLKYFERRLLYQPGVWYLFTAPRSGENKY 278
T I +G + D +G E ++ + D+ ++ FE +L + P W L + G+N
Sbjct: 86 TEIGTSGHEGKDSDEIGTSGHEGKDSDELDQMVENFEYQLHHWPTYWNLLPPSQKGQNP- 144
Query: 277 LXXXXXXXXXXXXXXSGSKQILVEQTTSSS-----VQPGDVLALAKRAVMASRKAALLAE 113
S + T S+ V+P DV+ LAKRA+ AS+ AA LA+
Sbjct: 145 -----------------SMSFTTQSVTRSTDKLIDVEPTDVINLAKRALSASKHAAFLAD 187
Query: 112 KSNILE 95
S L+
Sbjct: 188 NSTDLD 193
>ref|XP_011018731.1| PREDICTED: RNA polymerase sigma factor sigF, chloroplastic isoform
X2 [Populus euphratica]
Length = 557
Score = 67.8 bits (164), Expect = 7e-09
Identities = 49/177 (27%), Positives = 86/177 (48%), Gaps = 17/177 (9%)
Frame = -2
Query: 574 ATLLMLHDQASRPITSLPTTSLARQFPSSVLPHEPQNDYKTRIINGEKVVKHD------- 416
+++L+L +QA+ +T++PTTS A+ FP+SVL E +++++ + + K D
Sbjct: 26 SSVLILREQATPAVTAIPTTSTAQHFPTSVLLQEQRDEFRPL----QNIFKEDRPSQATL 81
Query: 415 -----GVGLPLCEEREKQKFDEYLKYFERRLLYQPGVWYLFTAPRSGENKYLXXXXXXXX 251
+G E ++ + D+ ++ FE +L + P W L + G+N
Sbjct: 82 DRRKTEIGTSGHEGKDSDELDQMVENFEYQLHHWPTYWNLLPPSQKGQNP---------- 131
Query: 250 XXXXXXSGSKQILVEQTTSSS-----VQPGDVLALAKRAVMASRKAALLAEKSNILE 95
S + T S+ V+P DV+ LAKRA+ AS+ AA LA+ S L+
Sbjct: 132 --------SMSFTTQSVTRSTDKLIDVEPTDVINLAKRALSASKHAAFLADNSTDLD 180
>ref|XP_008807705.1| PREDICTED: uncharacterized protein LOC103719986 [Phoenix
dactylifera]
Length = 155
Score = 66.6 bits (161), Expect = 2e-08
Identities = 39/89 (43%), Positives = 50/89 (56%), Gaps = 4/89 (4%)
Frame = -2
Query: 562 MLHDQASRPITSLPTTSLARQFPSSVLPHEPQNDYKTRIINGEKVVKHDG----VGLPLC 395
MLHDQAS S+PTTS+ FP SVL E ++DYKT I+ E+ D G
Sbjct: 30 MLHDQASWTNISVPTTSIVCHFPMSVLSQEQRDDYKTNYISKEEQNVQDDRQVESGRSCF 89
Query: 394 EEREKQKFDEYLKYFERRLLYQPGVWYLF 308
EE+ K + + L+YFE +LLY WY F
Sbjct: 90 EEKAKCEVAQCLRYFEHQLLYHQVFWYPF 118
>ref|XP_008807704.1| PREDICTED: RNA polymerase sigma factor sigF, chloroplastic-like
[Phoenix dactylifera]
Length = 466
Score = 66.2 bits (160), Expect = 2e-08
Identities = 35/62 (56%), Positives = 45/62 (72%)
Frame = -2
Query: 187 VQPGDVLALAKRAVMASRKAALLAEKSNILEFEFGQPPLLGLDLNGFTQEIVLEDETMIR 8
V+P DVLALAKRA+ ASRKAA L E+SNIL EF + LGL+ G T +I +++E +R
Sbjct: 49 VRPADVLALAKRAMRASRKAASLMEESNILAAEFDESHFLGLNHRGSTMDISIKEEVAVR 108
Query: 7 SK 2
SK
Sbjct: 109 SK 110
>ref|XP_010529716.1| PREDICTED: RNA polymerase sigma factor sigF, chloroplastic isoform
X2 [Tarenaya hassleriana]
Length = 462
Score = 64.7 bits (156), Expect = 6e-08
Identities = 53/192 (27%), Positives = 88/192 (45%), Gaps = 2/192 (1%)
Frame = -2
Query: 571 TLLMLHDQASRPITSLPTTSLARQFPSSVLPHEPQNDYKTRIINGEKVVKHDGVGLPLCE 392
+++ML +Q ++S +S++R FP+SVL EP+++YK K D E
Sbjct: 29 SVMMLREQTVPAVSSRHVSSISRHFPASVLSQEPRDEYKPL----SHSFKEDRTSQVTME 84
Query: 391 ER--EKQKFDEYLKYFERRLLYQPGVWYLFTAPRSGENKYLXXXXXXXXXXXXXXSGSKQ 218
R E + FE+R+L +W + + E KQ
Sbjct: 85 RRQLEDTVSSRENEKFEQRMLNSICLWNMLLGSVTAE---------------------KQ 123
Query: 217 ILVEQTTSSSVQPGDVLALAKRAVMASRKAALLAEKSNILEFEFGQPPLLGLDLNGFTQE 38
+ +P DV+A+AK A+ AS++AA+LAE S + + G P L+ + E
Sbjct: 124 TSSVVSPLEDAEPYDVVAMAKEALSASKRAAVLAEDSKLYPSDTGNP------LSTSSGE 177
Query: 37 IVLEDETMIRSK 2
+LE+ T++RSK
Sbjct: 178 SLLEERTIVRSK 189
>ref|XP_010529715.1| PREDICTED: RNA polymerase sigma factor sigF, chloroplastic isoform
X1 [Tarenaya hassleriana]
Length = 545
Score = 64.7 bits (156), Expect = 6e-08
Identities = 53/192 (27%), Positives = 88/192 (45%), Gaps = 2/192 (1%)
Frame = -2
Query: 571 TLLMLHDQASRPITSLPTTSLARQFPSSVLPHEPQNDYKTRIINGEKVVKHDGVGLPLCE 392
+++ML +Q ++S +S++R FP+SVL EP+++YK K D E
Sbjct: 29 SVMMLREQTVPAVSSRHVSSISRHFPASVLSQEPRDEYKPL----SHSFKEDRTSQVTME 84
Query: 391 ER--EKQKFDEYLKYFERRLLYQPGVWYLFTAPRSGENKYLXXXXXXXXXXXXXXSGSKQ 218
R E + FE+R+L +W + + E KQ
Sbjct: 85 RRQLEDTVSSRENEKFEQRMLNSICLWNMLLGSVTAE---------------------KQ 123
Query: 217 ILVEQTTSSSVQPGDVLALAKRAVMASRKAALLAEKSNILEFEFGQPPLLGLDLNGFTQE 38
+ +P DV+A+AK A+ AS++AA+LAE S + + G P L+ + E
Sbjct: 124 TSSVVSPLEDAEPYDVVAMAKEALSASKRAAVLAEDSKLYPSDTGNP------LSTSSGE 177
Query: 37 IVLEDETMIRSK 2
+LE+ T++RSK
Sbjct: 178 SLLEERTIVRSK 189
>gb|KJB62408.1| hypothetical protein B456_009G415400 [Gossypium raimondii]
Length = 413
Score = 64.3 bits (155), Expect = 8e-08
Identities = 50/161 (31%), Positives = 78/161 (48%), Gaps = 10/161 (6%)
Frame = -2
Query: 565 LMLHDQASRPITSLPTTSLARQFPSSVLPHEPQNDYK----TRIINGEKVVKHD------ 416
L H+QA TS+P TS+AR FP+SVL E ++DY+ ++ +K +
Sbjct: 34 LFHHEQAVPAATSIPITSVARHFPTSVLSQEQRDDYRPLPVLHLLKEDKAYSRETDKLRI 93
Query: 415 GVGLPLCEEREKQKFDEYLKYFERRLLYQPGVWYLFTAPRSGENKYLXXXXXXXXXXXXX 236
G G L EE+ + + FE++LL P + L GEN
Sbjct: 94 GNGPTLQEEKASDNIGQ--QEFEQQLLQWPDLRQLLALLELGENPSSSL----------- 140
Query: 235 XSGSKQILVEQTTSSSVQPGDVLALAKRAVMASRKAALLAE 113
+ + T + +++P +V+ALAK+A+ AS+KAA LAE
Sbjct: 141 ---NMLSVAADTETMTLEPSNVVALAKKALSASKKAASLAE 178