BLASTX nr result
ID: Ophiopogon21_contig00011835
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Ophiopogon21_contig00011835
(1318 letters)
Database: ./nr
77,306,371 sequences; 28,104,191,420 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_010922210.1| PREDICTED: DNA-directed RNA polymerase I sub... 533 e-148
ref|XP_008798769.1| PREDICTED: DNA-directed RNA polymerase I sub... 529 e-147
gb|AIO05696.1| putative RNA polymerase AI large subunit, partial... 519 e-144
ref|XP_009394527.1| PREDICTED: DNA-directed RNA polymerase I sub... 502 e-139
ref|XP_009407703.1| PREDICTED: DNA-directed RNA polymerase I sub... 496 e-137
gb|ACN85301.1| putative RNA polymerase A(I) large subunit [Oryza... 441 e-121
gb|KQL11441.1| hypothetical protein SETIT_005673mg [Setaria ital... 437 e-119
ref|XP_012700994.1| PREDICTED: DNA-directed RNA polymerase I sub... 437 e-119
gb|ACN85329.1| putative RNA polymerase A(I) large subunit, parti... 432 e-118
ref|XP_006656244.1| PREDICTED: DNA-directed RNA polymerase I sub... 432 e-118
ref|XP_002440173.1| hypothetical protein SORBIDRAFT_09g027223, p... 420 e-114
gb|ACN85238.1| putative RNA polymerase A(I) large subunit, parti... 417 e-113
dbj|BAD35511.1| putative RNA polymerase A(I) large subunit [Oryz... 416 e-113
ref|XP_008655376.1| PREDICTED: DNA-directed RNA polymerase I sub... 413 e-112
ref|XP_008655373.1| PREDICTED: DNA-directed RNA polymerase I sub... 413 e-112
ref|XP_008655371.1| PREDICTED: DNA-directed RNA polymerase I sub... 413 e-112
ref|XP_008655367.1| PREDICTED: DNA-directed RNA polymerase I sub... 413 e-112
tpg|DAA45226.1| TPA: putative DNA-directed RNA polymerase family... 397 e-107
emb|CBI29879.3| unnamed protein product [Vitis vinifera] 375 e-101
emb|CDP10074.1| unnamed protein product [Coffea canephora] 374 e-100
>ref|XP_010922210.1| PREDICTED: DNA-directed RNA polymerase I subunit rpa1 [Elaeis
guineensis]
Length = 1674
Score = 533 bits (1373), Expect = e-148
Identities = 266/454 (58%), Positives = 338/454 (74%), Gaps = 15/454 (3%)
Frame = -2
Query: 1317 YDLTMGPFKDTDSCKSCGQLEYKCPGHCGHIELVKPVYNPLLFNNLKSLLNVVCFFCHKF 1138
YD MGP DTDSCKSCGQL ++CPGHCGHI+L KP+YNPLLF NL++LL + CFFC +F
Sbjct: 53 YDPAMGPINDTDSCKSCGQLSFRCPGHCGHIDLAKPLYNPLLFRNLQNLLQITCFFCRRF 112
Query: 1137 RFGNDKVKQYTEILTHIARGDVLAAKGREASAMHDVFFAEGSEGENDIKEKSATTCELAT 958
R +KV++Y E L IA+GDV+ A+ EA + + +F +G E E+ + + + ++ T
Sbjct: 113 RLNEEKVQRYAEQLDLIAKGDVVGARTLEAHSWGEYYFPDGGETESAVISTNESLLKI-T 171
Query: 957 DCKDAKKNTWTSLQYAEAISSISVMMKSRAK-CANCGKNNPKISSPTFGWLCKTVKDSDI 781
+ K ++ TWTSLQY+EAIS +S ++ ++K CANCG+ NP I+SPTFGWL K ++ SDI
Sbjct: 172 NLK--QQQTWTSLQYSEAISIMSKFLREKSKKCANCGRKNPTITSPTFGWLNKAMQASDI 229
Query: 780 RANFIRESNVGLPSTXXXXXXXXXXXXAS--QSDEELSTDSAPTN-----------VSQQ 640
R NFI ++GL ST S Q+DEE S+ + +Q
Sbjct: 230 RTNFIIGYDLGLSSTEDQNAEGSQPRGDSASQTDEEPSSTAKVEGKTKKQSRNLQKTKKQ 289
Query: 639 LRNLPPEVFERLYSSSGQKHLLPLEAELIFEGLWRNEPQLCSLICDIQQNKLNLSGNNKA 460
R+LPPE+ +++ SS +KHLLP E E I + LW+N+ ++C+LICD+Q+ LN SG +K
Sbjct: 290 SRDLPPEIAKQILSSGQKKHLLPSEVEAILKDLWKNQAKICALICDLQRRSLNASGRDKG 349
Query: 459 YAMFFLKALLIPPSKFRPPAFA-VRGVVEHPQNLLLSKVQEANIAFRELITTDPDNPNII 283
YAMFFLK LL+PPSKFRPPA + RGV+EHPQN+LLSKVQE+NIA R +IT PD+P+I+
Sbjct: 350 YAMFFLKTLLVPPSKFRPPAGSGTRGVLEHPQNVLLSKVQESNIALRNVITDGPDHPDIV 409
Query: 282 RKWMDLQRSVTVLFDSSKGLAKSERETNGIRQLLEKKAGILRQKMMGKRVNFACRSVISP 103
R+WMDLQR+V VLFDS+KG K+ERE NGIRQLLEKKAGILRQKMMGKRVNFACRSVISP
Sbjct: 410 RRWMDLQRNVNVLFDSTKGWVKTEREVNGIRQLLEKKAGILRQKMMGKRVNFACRSVISP 469
Query: 102 DPYLAVNEIGIPPYFALKLTYPERVTPWNVNKLR 1
DPYLAVNEIGIPPYFAL+LTYPERVTPWNVNKLR
Sbjct: 470 DPYLAVNEIGIPPYFALRLTYPERVTPWNVNKLR 503
>ref|XP_008798769.1| PREDICTED: DNA-directed RNA polymerase I subunit rpa1 [Phoenix
dactylifera]
Length = 1665
Score = 529 bits (1363), Expect = e-147
Identities = 261/445 (58%), Positives = 327/445 (73%), Gaps = 6/445 (1%)
Frame = -2
Query: 1317 YDLTMGPFKDTDSCKSCGQLEYKCPGHCGHIELVKPVYNPLLFNNLKSLLNVVCFFCHKF 1138
YD +GP DTDSCKSCGQL ++CPGHCGHI+L +P+YNPLLF NL++LL + CFFC KF
Sbjct: 53 YDPALGPINDTDSCKSCGQLSFRCPGHCGHIDLARPLYNPLLFRNLQNLLQITCFFCRKF 112
Query: 1137 RFGNDKVKQYTEILTHIARGDVLAAKGREASAMHDVFFAEGSEGENDIKEKSATTCELAT 958
R +KV++Y E L IA+GD++ AK EA + + +F E + K + T E +
Sbjct: 113 RLNEEKVQRYAEQLCLIAKGDIVGAKTLEAHSWGEFYFPN----EEETKSAAIHTSESLS 168
Query: 957 DCKDAKKN-TWTSLQYAEAISSISVMMKSRAK-CANCGKNNPKISSPTFGWLCKTVKDSD 784
+ K+ TWTSLQ++EA+S +S ++ ++K CANC + NP I+SPTFGWL K ++ SD
Sbjct: 169 KITNLKQQQTWTSLQHSEALSILSKFLREKSKKCANCSRKNPTITSPTFGWLNKAIQASD 228
Query: 783 IRANFIRESNVGLPSTXXXXXXXXXXXXASQS---DEELSTDSAPTNVSQQLRNLPPEVF 613
IR+NFI ES++GL ST S S +E S +Q R+LPPE+
Sbjct: 229 IRSNFIMESDLGLSSTEDQNTEGSQSRGDSASQLDEEPSSITKVQRKTKKQSRDLPPEIA 288
Query: 612 ERLYSSSGQKHLLPLEAELIFEGLWRNEPQLCSLICDIQQNKLNLSGNNKAYAMFFLKAL 433
+++ SS +KHLLP E E I + LW NE ++C+LICD+Q+ LN G +K YAMFFLK L
Sbjct: 289 KQMLSSGQKKHLLPSEVEAILKDLWNNEAKICALICDVQRRSLNRLGRDKGYAMFFLKTL 348
Query: 432 LIPPSKFRPPAFA-VRGVVEHPQNLLLSKVQEANIAFRELITTDPDNPNIIRKWMDLQRS 256
L+PPSKFRPPA + RGV+EHPQN+LLSKVQE+NIA R +I PD+P+I+R WMDLQR+
Sbjct: 349 LVPPSKFRPPAGSGTRGVLEHPQNVLLSKVQESNIALRNVIANGPDHPDIVRSWMDLQRN 408
Query: 255 VTVLFDSSKGLAKSERETNGIRQLLEKKAGILRQKMMGKRVNFACRSVISPDPYLAVNEI 76
V +LFDSSKG K+ERE NGIRQLLEKKAGILRQKMMGKRVNFACRSVISPDPYLAVNEI
Sbjct: 409 VNLLFDSSKGWVKTEREVNGIRQLLEKKAGILRQKMMGKRVNFACRSVISPDPYLAVNEI 468
Query: 75 GIPPYFALKLTYPERVTPWNVNKLR 1
GIPPYFAL+LTYPERVTPWNVNKLR
Sbjct: 469 GIPPYFALRLTYPERVTPWNVNKLR 493
>gb|AIO05696.1| putative RNA polymerase AI large subunit, partial [Cocos nucifera]
Length = 1669
Score = 519 bits (1336), Expect = e-144
Identities = 259/458 (56%), Positives = 334/458 (72%), Gaps = 19/458 (4%)
Frame = -2
Query: 1317 YDLTMGPFKDTDSCKSCGQLEYKCPGHCGHIELVKPVYNPLLFNNLKSLLNVVCFFCHKF 1138
YD MGP DTDSCKSCGQL ++CPGHCGHI+L K +YNPLLF NL++LL + CFFCH+F
Sbjct: 53 YDPAMGPINDTDSCKSCGQLSFRCPGHCGHIDLAKQLYNPLLFRNLQNLLQITCFFCHRF 112
Query: 1137 RFGNDKVKQYTEILTHIARGDVLAAKGREASAMHDVFFAEGSEGENDIKEKSATTCELAT 958
R +KV++Y + L IA+GD++ A+ EA + F EG E ++ + + + ++ T
Sbjct: 113 RLNEEKVQRYAKQLDLIAKGDIVGARTLEARSWG---FPEGEETKSAVISTNESLLKI-T 168
Query: 957 DCKDAKKNTWTSLQYAEAISSISVMMKSRAK-CANCGKNNPKISSPTFGWLCKTVKDSDI 781
+ K ++ TWTSLQY+EA+S +S ++ ++K CANCG+ NP I+SPTFGWL K ++ SDI
Sbjct: 169 NLK--QQQTWTSLQYSEALSIMSKFLREKSKKCANCGRKNPTITSPTFGWLNKAMQASDI 226
Query: 780 RANFIRESNVGLPSTXXXXXXXXXXXXASQSDEELSTDSAPTNVSQ-------------- 643
R NFI ++GL ST S+ D TD P+++++
Sbjct: 227 RTNFIIGYDLGLSSTEDQNAEASQ----SRGDSASQTDEEPSSIAKVERKTKKQSRDLQK 282
Query: 642 ---QLRNLPPEVFERLYSSSGQKHLLPLEAELIFEGLWRNEPQLCSLICDIQQNKLNLSG 472
Q +LPPE+ +++ SS +KHLLP E E I + LW+N+ ++C+L+CD+Q LN SG
Sbjct: 283 TKKQSMDLPPEIAKQMLSSGQKKHLLPSEVEAILKDLWKNQAKICALMCDLQHRSLNASG 342
Query: 471 NNKAYAMFFLKALLIPPSKFRPPAFA-VRGVVEHPQNLLLSKVQEANIAFRELITTDPDN 295
+K YAMFFLK LL+PPSKFRPPA + RGV+EHPQN+LLSKVQE+NIA R +I PD+
Sbjct: 343 RDKGYAMFFLKTLLVPPSKFRPPAGSGTRGVLEHPQNVLLSKVQESNIALRNVIANGPDH 402
Query: 294 PNIIRKWMDLQRSVTVLFDSSKGLAKSERETNGIRQLLEKKAGILRQKMMGKRVNFACRS 115
P+I+R+WMDLQR+V VLFDS+KG K+ERE NGIRQLLEKKAGILRQKMMGKRVNFACRS
Sbjct: 403 PDIVRRWMDLQRNVNVLFDSTKGWVKTEREVNGIRQLLEKKAGILRQKMMGKRVNFACRS 462
Query: 114 VISPDPYLAVNEIGIPPYFALKLTYPERVTPWNVNKLR 1
VISPDPYLAVNEIGIPPYFAL+LTYPERVTPWNVNKLR
Sbjct: 463 VISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVNKLR 500
>ref|XP_009394527.1| PREDICTED: DNA-directed RNA polymerase I subunit rpa1-like [Musa
acuminata subsp. malaccensis]
Length = 1641
Score = 502 bits (1292), Expect = e-139
Identities = 255/441 (57%), Positives = 313/441 (70%), Gaps = 2/441 (0%)
Frame = -2
Query: 1317 YDLTMGPFKDTDSCKSCGQLEYKCPGHCGHIELVKPVYNPLLFNNLKSLLNVVCFFCHKF 1138
YD +GP D DSCKSCGQL +CPGHCGHI+L KP+YNPLLF L+ LL + CFFCHKF
Sbjct: 49 YDPALGPLNDNDSCKSCGQLSVRCPGHCGHIDLAKPLYNPLLFKTLQGLLQITCFFCHKF 108
Query: 1137 RFGNDKVKQYTEILTHIARGDVLAAKGREASAMHDVFFAEGSEGENDIKEKSATTCELAT 958
+ +KVK+Y L I +GD+ A+ EA+ ++FF E E++A +
Sbjct: 109 KINEEKVKRYVAQLDLIVKGDINGARSLEANTWSEIFFPE---------EETAESITSNF 159
Query: 957 DCKDAKKNTWTSLQYAEAISSISVMMKSRAK-CANCGKNNPKISSPTFGWLCKTVKDSDI 781
D ++K TWTSLQ +EA+S S M+ R K C NCGK NP I+SP FGWL KT ++SDI
Sbjct: 160 DNANSKHLTWTSLQQSEALSIFSKFMRERRKKCDNCGKKNPTINSPIFGWLNKTTQESDI 219
Query: 780 RANFIRESNVGLPSTXXXXXXXXXXXXASQSDEELSTDSAPTNVSQQLRNLPPEVFERLY 601
RANFI +S++ S+ S S E+ +S + +L +LPPE +++
Sbjct: 220 RANFILDSSLDQSSSEAKYSSITQSRGESAS--EMDEESPLSKKKVKLGDLPPEFIKQM- 276
Query: 600 SSSGQKHLLPLEAELIFEGLWRNEPQLCSLICDIQQNKLNLSGNNKAYAMFFLKALLIPP 421
SSSGQKHLLP E E I LW+NE LC LI DI L++S NK +AMFFLK LLIPP
Sbjct: 277 SSSGQKHLLPSEVEFILNNLWKNEANLCMLISDIHCKNLSISRGNKGFAMFFLKTLLIPP 336
Query: 420 SKFRPPAFAV-RGVVEHPQNLLLSKVQEANIAFRELITTDPDNPNIIRKWMDLQRSVTVL 244
SKFRP A + RGV+EHPQN LLSKVQ+ANIA + I +PD+P+I+R WMDLQ+ V VL
Sbjct: 337 SKFRPAAGSSGRGVLEHPQNTLLSKVQQANIALKNCIVANPDHPDILRSWMDLQKCVNVL 396
Query: 243 FDSSKGLAKSERETNGIRQLLEKKAGILRQKMMGKRVNFACRSVISPDPYLAVNEIGIPP 64
FDS+KG AKS++E +GIRQLLEKK+GILRQKMMGKRVNFACRSVISPDPYLAVNEIGIPP
Sbjct: 397 FDSTKGFAKSDKEASGIRQLLEKKSGILRQKMMGKRVNFACRSVISPDPYLAVNEIGIPP 456
Query: 63 YFALKLTYPERVTPWNVNKLR 1
YF+L+LTYPERVTPWNVNKLR
Sbjct: 457 YFSLRLTYPERVTPWNVNKLR 477
>ref|XP_009407703.1| PREDICTED: DNA-directed RNA polymerase I subunit rpa1-like [Musa
acuminata subsp. malaccensis]
Length = 1640
Score = 496 bits (1276), Expect = e-137
Identities = 254/443 (57%), Positives = 308/443 (69%), Gaps = 4/443 (0%)
Frame = -2
Query: 1317 YDLTMGPFKDTDSCKSCGQLEYKCPGHCGHIELVKPVYNPLLFNNLKSLLNVVCFFCHKF 1138
YD +GP DTDSCKSCGQL CPGHCGHI+L +P+YNPLLF L+ LL + CFFCHKF
Sbjct: 50 YDPALGPLNDTDSCKSCGQLSVCCPGHCGHIDLARPLYNPLLFKTLQGLLQITCFFCHKF 109
Query: 1137 RFGNDKVKQYTEILTHIARGDVLAAKGREASAMHDVFFAEGSEGENDIKEKSATTCELAT 958
+ +KVK+Y +L I +GD+ A+ EA++ ++FF E E+ +
Sbjct: 110 KINEEKVKRYVALLDLIVKGDINGARSLEANSWSEIFFPEEGTAES----------VTPS 159
Query: 957 DCKDAKKNTWTSLQYAEAISSISVMMKSRAK-CANCGKNNPKISSPTFGWLCKTVKDSDI 781
+ AK TWTSLQ +EA+S +S M+ R K C NCGK NP I SP FGWL KT + SDI
Sbjct: 160 NFDKAKHLTWTSLQQSEALSVLSKFMRERRKKCDNCGKKNPTIHSPIFGWLNKTTQGSDI 219
Query: 780 RANFIRESNVGLPSTXXXXXXXXXXXXASQS--DEELSTDSAPTNVSQQLRNLPPEVFER 607
RANFI +SN+ L S+ S S DEE ++L +LPPE ++
Sbjct: 220 RANFIIDSNLDLSSSEAKYSSLTQSRGESASEMDEESPLPQKKVKEDKELCDLPPEFIKQ 279
Query: 606 LYSSSGQKHLLPLEAELIFEGLWRNEPQLCSLICDIQQNKLNLSGNNKAYAMFFLKALLI 427
+ SSSGQKHLLP E ELI LW+NE LC LI I ++S NK AMFFLK LL+
Sbjct: 280 M-SSSGQKHLLPSEVELILNNLWKNEANLCMLISGIHCKSSSISRGNKGCAMFFLKTLLV 338
Query: 426 PPSKFRPPA-FAVRGVVEHPQNLLLSKVQEANIAFRELITTDPDNPNIIRKWMDLQRSVT 250
PPSKFRP A + RGV+EHPQN LLSKVQ+ANI + I D D+P+I+R+WMDLQ++V
Sbjct: 339 PPSKFRPAARTSGRGVLEHPQNTLLSKVQQANIGLKNCIIADLDHPDILRRWMDLQKTVN 398
Query: 249 VLFDSSKGLAKSERETNGIRQLLEKKAGILRQKMMGKRVNFACRSVISPDPYLAVNEIGI 70
VLFD +KG AKS++E +GIRQLLEKK+GILRQKMMGKRVNFACRSVISPDPYLAVNEIGI
Sbjct: 399 VLFDGTKGFAKSDKEASGIRQLLEKKSGILRQKMMGKRVNFACRSVISPDPYLAVNEIGI 458
Query: 69 PPYFALKLTYPERVTPWNVNKLR 1
PPYFAL+LTYPERVTPWNVNKLR
Sbjct: 459 PPYFALRLTYPERVTPWNVNKLR 481
>gb|ACN85301.1| putative RNA polymerase A(I) large subunit [Oryza coarctata]
Length = 1830
Score = 441 bits (1134), Expect = e-121
Identities = 229/440 (52%), Positives = 291/440 (66%), Gaps = 2/440 (0%)
Frame = -2
Query: 1314 DLTMGPFKDTDSCKSCGQLEYKCPGHCGHIELVKPVYNPLLFNNLKSLLNVVCFFCHKFR 1135
D MGP DTD+CKSCGQ +CPGH GHIEL KP++NPLLF +LK+LL+V CF CHKFR
Sbjct: 53 DPAMGPTNDTDTCKSCGQHSVRCPGHFGHIELAKPLFNPLLFMSLKNLLHVTCFHCHKFR 112
Query: 1134 FGNDKVKQYTEILTHIARGDVLAAKGREASAMHDVFFAEGSEGENDIKEKSATTCELATD 955
+V +YT L + RGD+ AK E S VF AE E E +K A
Sbjct: 113 LNRGQVDRYTNELELLVRGDIALAKNLEDSG-GKVFLAEDDETEATSGDKLA-------- 163
Query: 954 CKDAKKNTWTSLQYAEAISSISVMMKSRAK-CANCGKNNPKISSPTFGWLCKTVKDSDIR 778
C + + TWTS+Q EA+S + ++K R K C +C K NPKIS P +GWL K S +R
Sbjct: 164 CSEGENKTWTSIQLKEALSIFAKLLKKRQKKCVHCDKKNPKISHPVYGWLIKDTTSS-VR 222
Query: 777 ANFIRESNVGLPSTXXXXXXXXXXXXASQSDEELSTDSAPTNVS-QQLRNLPPEVFERLY 601
AN I ++ + S S DEEL++ + S + R + + + +
Sbjct: 223 ANVIADAKLSGDSRVHDSRETAV----SGLDEELTSPGTSSRGSTNETRRISDDTIKEMV 278
Query: 600 SSSGQKHLLPLEAELIFEGLWRNEPQLCSLICDIQQNKLNLSGNNKAYAMFFLKALLIPP 421
+SSG+KHLL E E I + LW+NE + C L+CD QQN LN+S + Y MFFLK LL+ P
Sbjct: 279 ASSGKKHLLTTEVESILKNLWKNEARFCMLLCDFQQNTLNVSDKGRGYEMFFLKNLLVAP 338
Query: 420 SKFRPPAFAVRGVVEHPQNLLLSKVQEANIAFRELITTDPDNPNIIRKWMDLQRSVTVLF 241
++FRP + G++EHPQN+LL KVQEAN+A ++ T ++ ++R+WMDLQRSV VL+
Sbjct: 339 NRFRPSISSSLGIMEHPQNVLLGKVQEANLALQQS-NTSSNHMEVLRRWMDLQRSVNVLY 397
Query: 240 DSSKGLAKSERETNGIRQLLEKKAGILRQKMMGKRVNFACRSVISPDPYLAVNEIGIPPY 61
DSSKGLAKSE+ NGIRQLLEKK GILRQKMMGKRVN+ACRSVISPDPYLAVNEIGIPP
Sbjct: 398 DSSKGLAKSEKNANGIRQLLEKKEGILRQKMMGKRVNYACRSVISPDPYLAVNEIGIPPV 457
Query: 60 FALKLTYPERVTPWNVNKLR 1
FA +LTYPE+VTPWN KL+
Sbjct: 458 FATRLTYPEKVTPWNARKLQ 477
>gb|KQL11441.1| hypothetical protein SETIT_005673mg [Setaria italica]
Length = 1667
Score = 437 bits (1123), Expect = e-119
Identities = 226/439 (51%), Positives = 294/439 (66%), Gaps = 1/439 (0%)
Frame = -2
Query: 1314 DLTMGPFKDTDSCKSCGQLEYKCPGHCGHIELVKPVYNPLLFNNLKSLLNVVCFFCHKFR 1135
D MGP DTD+CKSCGQ +CPGH GHIEL KP++NPLLF +LK+LL+V CF CHKFR
Sbjct: 54 DPAMGPINDTDTCKSCGQHSVRCPGHFGHIELAKPLFNPLLFTSLKNLLHVTCFHCHKFR 113
Query: 1134 FGNDKVKQYTEILTHIARGDVLAAKGREASAMHDVFFAEGSEGENDIKEKSATTCELATD 955
++V +Y L + +GDV AK E S A SE + DI E AT+C+ +
Sbjct: 114 LNKEQVDRYVNELELLVKGDVARAKNLEDSGKR----ASPSEEDEDITE--ATSCDKPSP 167
Query: 954 CKDAKKNTWTSLQYAEAISSISVMMKSRAK-CANCGKNNPKISSPTFGWLCKTVKDSDIR 778
KD K TWTS+Q E +S S +MK R K CA C +P SSP FGWL K S +R
Sbjct: 168 EKD--KKTWTSVQLKEVLSIFSKIMKKRQKKCAKCDMKSPTFSSPIFGWLVKDTSASAVR 225
Query: 777 ANFIRESNVGLPSTXXXXXXXXXXXXASQSDEELSTDSAPTNVSQQLRNLPPEVFERLYS 598
AN I + + S DEE ++ + ++++ +R+L + + +
Sbjct: 226 ANAIADFKL----KGDGGAHSSGETGVSGFDEERTSPQSKGSINE-VRHLSDDTIKEFVA 280
Query: 597 SSGQKHLLPLEAELIFEGLWRNEPQLCSLICDIQQNKLNLSGNNKAYAMFFLKALLIPPS 418
SSG+KHLLP E E I +GLW+NE + C L+CD QQ+ L++S K Y MFFL +LL+ P+
Sbjct: 281 SSGKKHLLPTEVESILKGLWKNEARFCMLLCDFQQDTLSVSEKRKGYEMFFLNSLLVAPN 340
Query: 417 KFRPPAFAVRGVVEHPQNLLLSKVQEANIAFRELITTDPDNPNIIRKWMDLQRSVTVLFD 238
+FRP + G++EHPQN+LLSKVQEAN+A + + ++ +++R+WMDLQRSV VL+D
Sbjct: 341 RFRPSTSSSLGIMEHPQNVLLSKVQEANLALQHN-SASSNHMDVLRRWMDLQRSVNVLYD 399
Query: 237 SSKGLAKSERETNGIRQLLEKKAGILRQKMMGKRVNFACRSVISPDPYLAVNEIGIPPYF 58
SSKG+ KSE+ +GIRQLLEKK GILRQKMMGKRVN+ACRSVISPDPYLAVNEIGIPP F
Sbjct: 400 SSKGIVKSEKNAHGIRQLLEKKEGILRQKMMGKRVNYACRSVISPDPYLAVNEIGIPPVF 459
Query: 57 ALKLTYPERVTPWNVNKLR 1
A +LTYPE+VTPWN KL+
Sbjct: 460 ATRLTYPEKVTPWNAKKLQ 478
>ref|XP_012700994.1| PREDICTED: DNA-directed RNA polymerase I subunit rpa1 [Setaria
italica]
Length = 1754
Score = 437 bits (1123), Expect = e-119
Identities = 226/439 (51%), Positives = 294/439 (66%), Gaps = 1/439 (0%)
Frame = -2
Query: 1314 DLTMGPFKDTDSCKSCGQLEYKCPGHCGHIELVKPVYNPLLFNNLKSLLNVVCFFCHKFR 1135
D MGP DTD+CKSCGQ +CPGH GHIEL KP++NPLLF +LK+LL+V CF CHKFR
Sbjct: 54 DPAMGPINDTDTCKSCGQHSVRCPGHFGHIELAKPLFNPLLFTSLKNLLHVTCFHCHKFR 113
Query: 1134 FGNDKVKQYTEILTHIARGDVLAAKGREASAMHDVFFAEGSEGENDIKEKSATTCELATD 955
++V +Y L + +GDV AK E S A SE + DI E AT+C+ +
Sbjct: 114 LNKEQVDRYVNELELLVKGDVARAKNLEDSGKR----ASPSEEDEDITE--ATSCDKPSP 167
Query: 954 CKDAKKNTWTSLQYAEAISSISVMMKSRAK-CANCGKNNPKISSPTFGWLCKTVKDSDIR 778
KD K TWTS+Q E +S S +MK R K CA C +P SSP FGWL K S +R
Sbjct: 168 EKD--KKTWTSVQLKEVLSIFSKIMKKRQKKCAKCDMKSPTFSSPIFGWLVKDTSASAVR 225
Query: 777 ANFIRESNVGLPSTXXXXXXXXXXXXASQSDEELSTDSAPTNVSQQLRNLPPEVFERLYS 598
AN I + + S DEE ++ + ++++ +R+L + + +
Sbjct: 226 ANAIADFKL----KGDGGAHSSGETGVSGFDEERTSPQSKGSINE-VRHLSDDTIKEFVA 280
Query: 597 SSGQKHLLPLEAELIFEGLWRNEPQLCSLICDIQQNKLNLSGNNKAYAMFFLKALLIPPS 418
SSG+KHLLP E E I +GLW+NE + C L+CD QQ+ L++S K Y MFFL +LL+ P+
Sbjct: 281 SSGKKHLLPTEVESILKGLWKNEARFCMLLCDFQQDTLSVSEKRKGYEMFFLNSLLVAPN 340
Query: 417 KFRPPAFAVRGVVEHPQNLLLSKVQEANIAFRELITTDPDNPNIIRKWMDLQRSVTVLFD 238
+FRP + G++EHPQN+LLSKVQEAN+A + + ++ +++R+WMDLQRSV VL+D
Sbjct: 341 RFRPSTSSSLGIMEHPQNVLLSKVQEANLALQHN-SASSNHMDVLRRWMDLQRSVNVLYD 399
Query: 237 SSKGLAKSERETNGIRQLLEKKAGILRQKMMGKRVNFACRSVISPDPYLAVNEIGIPPYF 58
SSKG+ KSE+ +GIRQLLEKK GILRQKMMGKRVN+ACRSVISPDPYLAVNEIGIPP F
Sbjct: 400 SSKGIVKSEKNAHGIRQLLEKKEGILRQKMMGKRVNYACRSVISPDPYLAVNEIGIPPVF 459
Query: 57 ALKLTYPERVTPWNVNKLR 1
A +LTYPE+VTPWN KL+
Sbjct: 460 ATRLTYPEKVTPWNAKKLQ 478
>gb|ACN85329.1| putative RNA polymerase A(I) large subunit, partial [Oryza
brachyantha]
Length = 1138
Score = 432 bits (1112), Expect = e-118
Identities = 221/440 (50%), Positives = 290/440 (65%), Gaps = 2/440 (0%)
Frame = -2
Query: 1314 DLTMGPFKDTDSCKSCGQLEYKCPGHCGHIELVKPVYNPLLFNNLKSLLNVVCFFCHKFR 1135
D MGP DTD+CKSCGQ +CPGH GHIEL KP++NPLLF +LK+LL++ CF CHKFR
Sbjct: 53 DPAMGPTSDTDTCKSCGQHSVRCPGHFGHIELAKPLFNPLLFLSLKNLLHMTCFHCHKFR 112
Query: 1134 FGNDKVKQYTEILTHIARGDVLAAKGREASAMHDVFFAEGSEGENDIKEKSATTCELATD 955
++V +YT+ L + +GD+ AK E S V E + E +KS
Sbjct: 113 LNREQVDRYTDELELLVKGDIAHAKNLEDSG-GKVLLEEDDKTEATSGDKST-------- 163
Query: 954 CKDAKKNTWTSLQYAEAISSISVMMKSRAK-CANCGKNNPKISSPTFGWLCKTVKDSDIR 778
C +++ TWTS+Q E +S + MK R K C +C K NPKIS P +GWL K S +R
Sbjct: 164 CSESENKTWTSIQLKEVLSIFANFMKKRQKKCTHCNKKNPKISHPIYGWLIKDADISAVR 223
Query: 777 ANFIRESNVGLPSTXXXXXXXXXXXXASQSDEELSTDSAPTNVS-QQLRNLPPEVFERLY 601
AN I ++ + + S DEEL++ + S + R + + + +
Sbjct: 224 ANAIADAKL----SGDVRFHDSRETGVSGLDEELTSPGTSSRGSTNETRRISDDTIKEMV 279
Query: 600 SSSGQKHLLPLEAELIFEGLWRNEPQLCSLICDIQQNKLNLSGNNKAYAMFFLKALLIPP 421
+SSG+KHLL E E I + LW+NE + C L+CD QQN LN+S + Y MFFLK LL+ P
Sbjct: 280 ASSGKKHLLATEVESILKDLWKNEARFCMLLCDFQQNTLNVSEKKRGYEMFFLKNLLVAP 339
Query: 420 SKFRPPAFAVRGVVEHPQNLLLSKVQEANIAFRELITTDPDNPNIIRKWMDLQRSVTVLF 241
++FRP + G++EHPQN+LLSKVQEAN+A ++ ++ ++R+WMD+QRSV VL+
Sbjct: 340 NRFRPSIHSSLGIMEHPQNILLSKVQEANLALQQSNAAS-NHMEVLRRWMDMQRSVNVLY 398
Query: 240 DSSKGLAKSERETNGIRQLLEKKAGILRQKMMGKRVNFACRSVISPDPYLAVNEIGIPPY 61
DSSKGLAK+E+ NGIRQLLEKK GILRQKMMGKRVN+ACRSVISPDPYLAVNEIGIPP
Sbjct: 399 DSSKGLAKNEKNANGIRQLLEKKEGILRQKMMGKRVNYACRSVISPDPYLAVNEIGIPPV 458
Query: 60 FALKLTYPERVTPWNVNKLR 1
FA +LTYPE+VTPWN KL+
Sbjct: 459 FATRLTYPEKVTPWNARKLQ 478
>ref|XP_006656244.1| PREDICTED: DNA-directed RNA polymerase I subunit rpa1-like [Oryza
brachyantha]
Length = 1755
Score = 432 bits (1112), Expect = e-118
Identities = 221/440 (50%), Positives = 290/440 (65%), Gaps = 2/440 (0%)
Frame = -2
Query: 1314 DLTMGPFKDTDSCKSCGQLEYKCPGHCGHIELVKPVYNPLLFNNLKSLLNVVCFFCHKFR 1135
D MGP DTD+CKSCGQ +CPGH GHIEL KP++NPLLF +LK+LL++ CF CHKFR
Sbjct: 53 DPAMGPTSDTDTCKSCGQHSVRCPGHFGHIELAKPLFNPLLFLSLKNLLHMTCFHCHKFR 112
Query: 1134 FGNDKVKQYTEILTHIARGDVLAAKGREASAMHDVFFAEGSEGENDIKEKSATTCELATD 955
++V +YT+ L + +GD+ AK E S V E + E +KS
Sbjct: 113 LNREQVDRYTDELELLVKGDIAHAKNLEDSG-GKVLLEEDDKTEATSGDKST-------- 163
Query: 954 CKDAKKNTWTSLQYAEAISSISVMMKSRAK-CANCGKNNPKISSPTFGWLCKTVKDSDIR 778
C +++ TWTS+Q E +S + MK R K C +C K NPKIS P +GWL K S +R
Sbjct: 164 CSESENKTWTSIQLKEVLSIFANFMKKRQKKCTHCNKKNPKISHPIYGWLIKDADISAVR 223
Query: 777 ANFIRESNVGLPSTXXXXXXXXXXXXASQSDEELSTDSAPTNVS-QQLRNLPPEVFERLY 601
AN I ++ + + S DEEL++ + S + R + + + +
Sbjct: 224 ANAIADAKL----SGDVRFHDSRETGVSGLDEELTSPGTSSRGSTNETRRISDDTIKEMV 279
Query: 600 SSSGQKHLLPLEAELIFEGLWRNEPQLCSLICDIQQNKLNLSGNNKAYAMFFLKALLIPP 421
+SSG+KHLL E E I + LW+NE + C L+CD QQN LN+S + Y MFFLK LL+ P
Sbjct: 280 ASSGKKHLLATEVESILKDLWKNEARFCMLLCDFQQNTLNVSEKKRGYEMFFLKNLLVAP 339
Query: 420 SKFRPPAFAVRGVVEHPQNLLLSKVQEANIAFRELITTDPDNPNIIRKWMDLQRSVTVLF 241
++FRP + G++EHPQN+LLSKVQEAN+A ++ ++ ++R+WMD+QRSV VL+
Sbjct: 340 NRFRPSIHSSLGIMEHPQNILLSKVQEANLALQQSNAAS-NHMEVLRRWMDMQRSVNVLY 398
Query: 240 DSSKGLAKSERETNGIRQLLEKKAGILRQKMMGKRVNFACRSVISPDPYLAVNEIGIPPY 61
DSSKGLAK+E+ NGIRQLLEKK GILRQKMMGKRVN+ACRSVISPDPYLAVNEIGIPP
Sbjct: 399 DSSKGLAKNEKNANGIRQLLEKKEGILRQKMMGKRVNYACRSVISPDPYLAVNEIGIPPV 458
Query: 60 FALKLTYPERVTPWNVNKLR 1
FA +LTYPE+VTPWN KL+
Sbjct: 459 FATRLTYPEKVTPWNARKLQ 478
>ref|XP_002440173.1| hypothetical protein SORBIDRAFT_09g027223, partial [Sorghum bicolor]
gi|241945458|gb|EES18603.1| hypothetical protein
SORBIDRAFT_09g027223, partial [Sorghum bicolor]
Length = 799
Score = 420 bits (1080), Expect = e-114
Identities = 221/440 (50%), Positives = 289/440 (65%), Gaps = 2/440 (0%)
Frame = -2
Query: 1314 DLTMGPFKDTDSCKSCGQLEYKCPGHCGHIELVKPVYNPLLFNNLKSLLNVVCFFCHKFR 1135
D MGP DTD+CKSCGQ +CPGH GHIEL KP++NPLLF +L++LL+V CF+CHKFR
Sbjct: 54 DPAMGPINDTDTCKSCGQNSVRCPGHFGHIELAKPLFNPLLFMSLRNLLHVTCFYCHKFR 113
Query: 1134 FGNDKVKQYTEILTHIARGDVLAAKGREASAMHDVFFAEGSEGENDIKEKSATTCELATD 955
++V +Y L + +GD++ AK E S A SE + +I E T+ + ++
Sbjct: 114 LNKEQVDRYVNELELLVKGDIVGAKNLEDSVKE----AYLSEEDENITE--TTSGDKSSS 167
Query: 954 CKDAKKNTWTSLQYAEAISSISVMMKSR-AKCANCGKNNPKISSPTFGWLCKTVKDSDIR 778
KD K TWTS+Q E +S S +MK R KCA C +P ISSP FGWL K S +R
Sbjct: 168 VKDNK--TWTSVQLKEVLSIFSKIMKKRQTKCAKCDMKSPTISSPIFGWLVKDTSASAVR 225
Query: 777 ANFIRESNVGLPSTXXXXXXXXXXXXASQSDEELSTDSAPTNVS-QQLRNLPPEVFERLY 601
AN I + + S DEE ++ + S ++R L + + +
Sbjct: 226 ANAIADFKL----KGDGDAHNSGDTGVSGLDEETTSPGMVSKGSINEVRRLSDDAVKEMV 281
Query: 600 SSSGQKHLLPLEAELIFEGLWRNEPQLCSLICDIQQNKLNLSGNNKAYAMFFLKALLIPP 421
+SSG+KHLLP E E I + LW NE + C L+CD Q+N L+ + Y MFFL +LL+ P
Sbjct: 282 ASSGKKHLLPTEVESILKDLWNNEARFCMLLCDFQKNTLSEPEKRRGYEMFFLNSLLVAP 341
Query: 420 SKFRPPAFAVRGVVEHPQNLLLSKVQEANIAFRELITTDPDNPNIIRKWMDLQRSVTVLF 241
++FRP + G++EHPQ++LLSKVQEAN+A + ++ ++IR+WMDLQRSV VL+
Sbjct: 342 NRFRPSTNSSLGMMEHPQSVLLSKVQEANLALQHH-NASSNHMDVIRRWMDLQRSVNVLY 400
Query: 240 DSSKGLAKSERETNGIRQLLEKKAGILRQKMMGKRVNFACRSVISPDPYLAVNEIGIPPY 61
DSSKGL KSE+ +GIRQLLEKK GILRQKMMGKRVN+ACRSVISPDPYLAVNEIGIPP
Sbjct: 401 DSSKGLVKSEKNAHGIRQLLEKKEGILRQKMMGKRVNYACRSVISPDPYLAVNEIGIPPV 460
Query: 60 FALKLTYPERVTPWNVNKLR 1
FA +LTYPE+VTPWN KL+
Sbjct: 461 FATRLTYPEKVTPWNTKKLQ 480
>gb|ACN85238.1| putative RNA polymerase A(I) large subunit, partial [Oryza minuta]
Length = 563
Score = 417 bits (1071), Expect = e-113
Identities = 221/448 (49%), Positives = 288/448 (64%), Gaps = 10/448 (2%)
Frame = -2
Query: 1314 DLTMGPFKDTDSCKSCGQLEYKCPGHCGHIELVKPVYNPLLFNNLKSLLNVVCFFCHKFR 1135
D MGP TD+CKSCGQ +CPGH GHIEL KP++NPLLF +LK+LL+V CF CHKFR
Sbjct: 53 DPAMGPTSVTDTCKSCGQQSIRCPGHFGHIELAKPLFNPLLFMSLKNLLHVTCFHCHKFR 112
Query: 1134 FGNDK--------VKQYTEILTHIARGDVLAAKGREASAMHDVFFAEGSEGENDIKEKSA 979
++ V +YT L + RGD+ AK E V E E E +KSA
Sbjct: 113 LNREQFSLSWSIQVDRYTNELELLVRGDIAHAKNLEDLG-GKVLSEEDDETEATSGDKSA 171
Query: 978 TTCELATDCKDAKKNTWTSLQYAEAISSISVMMKSRAK-CANCGKNNPKISSPTFGWLCK 802
+ + + TWTS+Q EA+S + +MK + K CA+C K NP IS P +GWL K
Sbjct: 172 RS--------ERENKTWTSIQLKEALSIFAKLMKKKQKKCAHCEKKNPIISHPIYGWLIK 223
Query: 801 TVKDSDIRANFIRESNVGLPSTXXXXXXXXXXXXASQSDEELSTDSAPTNVS-QQLRNLP 625
S +RAN I + + + S DEEL++ + S + R +
Sbjct: 224 DTTSSSVRANAIANAKL----SGDGHVHDSRETGVSGLDEELTSPGTSSRRSTNETRRIS 279
Query: 624 PEVFERLYSSSGQKHLLPLEAELIFEGLWRNEPQLCSLICDIQQNKLNLSGNNKAYAMFF 445
+ + + +SSG+KHLL E E I + LW+ E + C L+CD QQN LN+S + Y MFF
Sbjct: 280 DDTIKEMVASSGKKHLLTTEVESILKDLWKKEARFCMLLCDFQQNTLNVSEKRRGYEMFF 339
Query: 444 LKALLIPPSKFRPPAFAVRGVVEHPQNLLLSKVQEANIAFRELITTDPDNPNIIRKWMDL 265
LK LL+ P++FR + G+VEHPQN+LLSKVQE+N+A ++ I ++ +++R+WMDL
Sbjct: 340 LKNLLVAPNRFRSSTSSGLGIVEHPQNVLLSKVQESNLALQQSIAAS-NHMDVLRRWMDL 398
Query: 264 QRSVTVLFDSSKGLAKSERETNGIRQLLEKKAGILRQKMMGKRVNFACRSVISPDPYLAV 85
QRSV VL+DSSKGL+K+E+ NGIRQLLEKK GILRQKMMGKRVN+ACRSVISPDPYLAV
Sbjct: 399 QRSVNVLYDSSKGLSKNEKNANGIRQLLEKKEGILRQKMMGKRVNYACRSVISPDPYLAV 458
Query: 84 NEIGIPPYFALKLTYPERVTPWNVNKLR 1
NEIGIPP FA +LTYPE+VTPWN KL+
Sbjct: 459 NEIGIPPVFATRLTYPEKVTPWNARKLQ 486
>dbj|BAD35511.1| putative RNA polymerase A(I) large subunit [Oryza sativa Japonica
Group]
Length = 1748
Score = 416 bits (1068), Expect = e-113
Identities = 219/448 (48%), Positives = 287/448 (64%), Gaps = 10/448 (2%)
Frame = -2
Query: 1314 DLTMGPFKDTDSCKSCGQLEYKCPGHCGHIELVKPVYNPLLFNNLKSLLNVVCFFCHKFR 1135
D MGP DTD+CKSCGQ +CPGH GHIEL KP++NPLLF +LK+LL V CF CHKFR
Sbjct: 53 DPAMGPTNDTDTCKSCGQQSIRCPGHFGHIELAKPLFNPLLFMSLKNLLQVTCFHCHKFR 112
Query: 1134 FGNDKVKQYTEI--------LTHIARGDVLAAKGREASAMHDVFFAEGSEGENDIKEKSA 979
++ ++ I L + RGD+ AK E V E E E +KSA
Sbjct: 113 LNKEQHSRFCRITKIFDFLELELLVRGDIAHAKNLEDLG-GKVLSKEDDETEATSGDKSA 171
Query: 978 TTCELATDCKDAKKNTWTSLQYAEAISSISVMMKSRAK-CANCGKNNPKISSPTFGWLCK 802
+ + + TWTS+Q EA+S S +MK R K CA+C K NP I +P +GWL K
Sbjct: 172 RS--------ERENKTWTSIQLKEALSIFSKLMKKRQKKCAHCEKKNPIIKNPIYGWLIK 223
Query: 801 TVKDSDIRANFIRESNVGLPSTXXXXXXXXXXXXASQSDEELSTDSAPTNVS-QQLRNLP 625
S +RAN I + + + S DEEL++ + S + R +
Sbjct: 224 DTTSSSVRANAIANAKL----SGDGHVNDSRETGVSGLDEELTSPGTLSRRSTNETRRIS 279
Query: 624 PEVFERLYSSSGQKHLLPLEAELIFEGLWRNEPQLCSLICDIQQNKLNLSGNNKAYAMFF 445
+ + + +SSG+KHLL E E I + LW+ E + C L+CD QQN L++S + Y MFF
Sbjct: 280 DDTIKEMVASSGKKHLLTTEVESILKDLWKKEARFCMLLCDFQQNTLSVSEKRRGYEMFF 339
Query: 444 LKALLIPPSKFRPPAFAVRGVVEHPQNLLLSKVQEANIAFRELITTDPDNPNIIRKWMDL 265
LK LL+ P++FRP + G++EHPQN+LLSKVQE+N+A ++ I ++ ++R+WMDL
Sbjct: 340 LKNLLVAPNRFRPSISSSLGIMEHPQNVLLSKVQESNLALQQSIAAS-NHMEVLRRWMDL 398
Query: 264 QRSVTVLFDSSKGLAKSERETNGIRQLLEKKAGILRQKMMGKRVNFACRSVISPDPYLAV 85
QR+V VL+DSSKGL+K+E+ NGIRQLLEKK GILRQKMMGKRVN+ACRSVISPDPYLAV
Sbjct: 399 QRNVNVLYDSSKGLSKNEKNANGIRQLLEKKEGILRQKMMGKRVNYACRSVISPDPYLAV 458
Query: 84 NEIGIPPYFALKLTYPERVTPWNVNKLR 1
NEIGIPP FA +LTYPE+VTPWN KL+
Sbjct: 459 NEIGIPPVFATRLTYPEKVTPWNARKLQ 486
>ref|XP_008655376.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA1 isoform X4 [Zea
mays]
Length = 1509
Score = 413 bits (1061), Expect = e-112
Identities = 214/440 (48%), Positives = 287/440 (65%), Gaps = 2/440 (0%)
Frame = -2
Query: 1314 DLTMGPFKDTDSCKSCGQLEYKCPGHCGHIELVKPVYNPLLFNNLKSLLNVVCFFCHKFR 1135
D MGP D D CKSCGQ +CPGH GHIEL KP++NPLLF +LK+LL+V CF CHKFR
Sbjct: 54 DPAMGPINDIDICKSCGQHSVRCPGHFGHIELAKPLFNPLLFMSLKNLLHVTCFHCHKFR 113
Query: 1134 FGNDKVKQYTEILTHIARGDVLAAKGREASAMHDVFFAEGSEGENDIKEKSATTCELATD 955
++V +Y L + +GD++ AK E S + + + ++ E N T+ + ++
Sbjct: 114 LNKEQVDRYVNELELLVKGDIVCAKNLEDS-VEEAYLSKEDENMN-----KTTSGDNSSS 167
Query: 954 CKDAKKNTWTSLQYAEAISSISVMMKSRAK-CANCGKNNPKISSPTFGWLCKTVKDSDIR 778
KD K TWTS+Q E +S S +MK R K CA C +P ISSP FGWL K K S +R
Sbjct: 168 VKD--KKTWTSIQLKEVLSIFSKIMKKRQKKCAKCDMKSPTISSPIFGWLVKDTKASAVR 225
Query: 777 ANFIRESNVGLPSTXXXXXXXXXXXXASQSDEELSTDSAPTNVS-QQLRNLPPEVFERLY 601
N I + + S +EE S+ + S ++R L + + L
Sbjct: 226 TNAIADFKL----KGDGDIHNSGETGVSGLEEESSSPGMVSKDSINEVRGLSDDTIKELV 281
Query: 600 SSSGQKHLLPLEAELIFEGLWRNEPQLCSLICDIQQNKLNLSGNNKAYAMFFLKALLIPP 421
+SSG+KHLLP E E I + LW+NE + C L+CD Q+N + + Y MFFL +LL+ P
Sbjct: 282 ASSGKKHLLPTEVESILKDLWKNEARFCMLLCDFQKNMSSEPEKRRGYEMFFLSSLLVAP 341
Query: 420 SKFRPPAFAVRGVVEHPQNLLLSKVQEANIAFRELITTDPDNPNIIRKWMDLQRSVTVLF 241
++FRP + G++EHPQ++LLSKVQE+N+A + ++ +++++WMDLQRSV VL+
Sbjct: 342 NRFRPSTSSSLGIMEHPQSVLLSKVQESNLALQHN-NASSNHMDVLQRWMDLQRSVNVLY 400
Query: 240 DSSKGLAKSERETNGIRQLLEKKAGILRQKMMGKRVNFACRSVISPDPYLAVNEIGIPPY 61
DSSKGLA+SE+ +GIRQLLEKK GILRQKMMGKRVN+ACRSVISPDPYLAVNEIGIPP
Sbjct: 401 DSSKGLARSEKNAHGIRQLLEKKEGILRQKMMGKRVNYACRSVISPDPYLAVNEIGIPPV 460
Query: 60 FALKLTYPERVTPWNVNKLR 1
FA +LTYPE+VTPWN +L+
Sbjct: 461 FATRLTYPEKVTPWNTKRLQ 480
>ref|XP_008655373.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA1 isoform X3 [Zea
mays]
Length = 1523
Score = 413 bits (1061), Expect = e-112
Identities = 214/440 (48%), Positives = 287/440 (65%), Gaps = 2/440 (0%)
Frame = -2
Query: 1314 DLTMGPFKDTDSCKSCGQLEYKCPGHCGHIELVKPVYNPLLFNNLKSLLNVVCFFCHKFR 1135
D MGP D D CKSCGQ +CPGH GHIEL KP++NPLLF +LK+LL+V CF CHKFR
Sbjct: 54 DPAMGPINDIDICKSCGQHSVRCPGHFGHIELAKPLFNPLLFMSLKNLLHVTCFHCHKFR 113
Query: 1134 FGNDKVKQYTEILTHIARGDVLAAKGREASAMHDVFFAEGSEGENDIKEKSATTCELATD 955
++V +Y L + +GD++ AK E S + + + ++ E N T+ + ++
Sbjct: 114 LNKEQVDRYVNELELLVKGDIVCAKNLEDS-VEEAYLSKEDENMN-----KTTSGDNSSS 167
Query: 954 CKDAKKNTWTSLQYAEAISSISVMMKSRAK-CANCGKNNPKISSPTFGWLCKTVKDSDIR 778
KD K TWTS+Q E +S S +MK R K CA C +P ISSP FGWL K K S +R
Sbjct: 168 VKD--KKTWTSIQLKEVLSIFSKIMKKRQKKCAKCDMKSPTISSPIFGWLVKDTKASAVR 225
Query: 777 ANFIRESNVGLPSTXXXXXXXXXXXXASQSDEELSTDSAPTNVS-QQLRNLPPEVFERLY 601
N I + + S +EE S+ + S ++R L + + L
Sbjct: 226 TNAIADFKL----KGDGDIHNSGETGVSGLEEESSSPGMVSKDSINEVRGLSDDTIKELV 281
Query: 600 SSSGQKHLLPLEAELIFEGLWRNEPQLCSLICDIQQNKLNLSGNNKAYAMFFLKALLIPP 421
+SSG+KHLLP E E I + LW+NE + C L+CD Q+N + + Y MFFL +LL+ P
Sbjct: 282 ASSGKKHLLPTEVESILKDLWKNEARFCMLLCDFQKNMSSEPEKRRGYEMFFLSSLLVAP 341
Query: 420 SKFRPPAFAVRGVVEHPQNLLLSKVQEANIAFRELITTDPDNPNIIRKWMDLQRSVTVLF 241
++FRP + G++EHPQ++LLSKVQE+N+A + ++ +++++WMDLQRSV VL+
Sbjct: 342 NRFRPSTSSSLGIMEHPQSVLLSKVQESNLALQHN-NASSNHMDVLQRWMDLQRSVNVLY 400
Query: 240 DSSKGLAKSERETNGIRQLLEKKAGILRQKMMGKRVNFACRSVISPDPYLAVNEIGIPPY 61
DSSKGLA+SE+ +GIRQLLEKK GILRQKMMGKRVN+ACRSVISPDPYLAVNEIGIPP
Sbjct: 401 DSSKGLARSEKNAHGIRQLLEKKEGILRQKMMGKRVNYACRSVISPDPYLAVNEIGIPPV 460
Query: 60 FALKLTYPERVTPWNVNKLR 1
FA +LTYPE+VTPWN +L+
Sbjct: 461 FATRLTYPEKVTPWNTKRLQ 480
>ref|XP_008655371.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA1 isoform X2 [Zea
mays]
Length = 1533
Score = 413 bits (1061), Expect = e-112
Identities = 214/440 (48%), Positives = 287/440 (65%), Gaps = 2/440 (0%)
Frame = -2
Query: 1314 DLTMGPFKDTDSCKSCGQLEYKCPGHCGHIELVKPVYNPLLFNNLKSLLNVVCFFCHKFR 1135
D MGP D D CKSCGQ +CPGH GHIEL KP++NPLLF +LK+LL+V CF CHKFR
Sbjct: 54 DPAMGPINDIDICKSCGQHSVRCPGHFGHIELAKPLFNPLLFMSLKNLLHVTCFHCHKFR 113
Query: 1134 FGNDKVKQYTEILTHIARGDVLAAKGREASAMHDVFFAEGSEGENDIKEKSATTCELATD 955
++V +Y L + +GD++ AK E S + + + ++ E N T+ + ++
Sbjct: 114 LNKEQVDRYVNELELLVKGDIVCAKNLEDS-VEEAYLSKEDENMN-----KTTSGDNSSS 167
Query: 954 CKDAKKNTWTSLQYAEAISSISVMMKSRAK-CANCGKNNPKISSPTFGWLCKTVKDSDIR 778
KD K TWTS+Q E +S S +MK R K CA C +P ISSP FGWL K K S +R
Sbjct: 168 VKD--KKTWTSIQLKEVLSIFSKIMKKRQKKCAKCDMKSPTISSPIFGWLVKDTKASAVR 225
Query: 777 ANFIRESNVGLPSTXXXXXXXXXXXXASQSDEELSTDSAPTNVS-QQLRNLPPEVFERLY 601
N I + + S +EE S+ + S ++R L + + L
Sbjct: 226 TNAIADFKL----KGDGDIHNSGETGVSGLEEESSSPGMVSKDSINEVRGLSDDTIKELV 281
Query: 600 SSSGQKHLLPLEAELIFEGLWRNEPQLCSLICDIQQNKLNLSGNNKAYAMFFLKALLIPP 421
+SSG+KHLLP E E I + LW+NE + C L+CD Q+N + + Y MFFL +LL+ P
Sbjct: 282 ASSGKKHLLPTEVESILKDLWKNEARFCMLLCDFQKNMSSEPEKRRGYEMFFLSSLLVAP 341
Query: 420 SKFRPPAFAVRGVVEHPQNLLLSKVQEANIAFRELITTDPDNPNIIRKWMDLQRSVTVLF 241
++FRP + G++EHPQ++LLSKVQE+N+A + ++ +++++WMDLQRSV VL+
Sbjct: 342 NRFRPSTSSSLGIMEHPQSVLLSKVQESNLALQHN-NASSNHMDVLQRWMDLQRSVNVLY 400
Query: 240 DSSKGLAKSERETNGIRQLLEKKAGILRQKMMGKRVNFACRSVISPDPYLAVNEIGIPPY 61
DSSKGLA+SE+ +GIRQLLEKK GILRQKMMGKRVN+ACRSVISPDPYLAVNEIGIPP
Sbjct: 401 DSSKGLARSEKNAHGIRQLLEKKEGILRQKMMGKRVNYACRSVISPDPYLAVNEIGIPPV 460
Query: 60 FALKLTYPERVTPWNVNKLR 1
FA +LTYPE+VTPWN +L+
Sbjct: 461 FATRLTYPEKVTPWNTKRLQ 480
>ref|XP_008655367.1| PREDICTED: DNA-directed RNA polymerase I subunit rpa1 isoform X1 [Zea
mays]
Length = 1690
Score = 413 bits (1061), Expect = e-112
Identities = 214/440 (48%), Positives = 287/440 (65%), Gaps = 2/440 (0%)
Frame = -2
Query: 1314 DLTMGPFKDTDSCKSCGQLEYKCPGHCGHIELVKPVYNPLLFNNLKSLLNVVCFFCHKFR 1135
D MGP D D CKSCGQ +CPGH GHIEL KP++NPLLF +LK+LL+V CF CHKFR
Sbjct: 54 DPAMGPINDIDICKSCGQHSVRCPGHFGHIELAKPLFNPLLFMSLKNLLHVTCFHCHKFR 113
Query: 1134 FGNDKVKQYTEILTHIARGDVLAAKGREASAMHDVFFAEGSEGENDIKEKSATTCELATD 955
++V +Y L + +GD++ AK E S + + + ++ E N T+ + ++
Sbjct: 114 LNKEQVDRYVNELELLVKGDIVCAKNLEDS-VEEAYLSKEDENMN-----KTTSGDNSSS 167
Query: 954 CKDAKKNTWTSLQYAEAISSISVMMKSRAK-CANCGKNNPKISSPTFGWLCKTVKDSDIR 778
KD K TWTS+Q E +S S +MK R K CA C +P ISSP FGWL K K S +R
Sbjct: 168 VKD--KKTWTSIQLKEVLSIFSKIMKKRQKKCAKCDMKSPTISSPIFGWLVKDTKASAVR 225
Query: 777 ANFIRESNVGLPSTXXXXXXXXXXXXASQSDEELSTDSAPTNVS-QQLRNLPPEVFERLY 601
N I + + S +EE S+ + S ++R L + + L
Sbjct: 226 TNAIADFKL----KGDGDIHNSGETGVSGLEEESSSPGMVSKDSINEVRGLSDDTIKELV 281
Query: 600 SSSGQKHLLPLEAELIFEGLWRNEPQLCSLICDIQQNKLNLSGNNKAYAMFFLKALLIPP 421
+SSG+KHLLP E E I + LW+NE + C L+CD Q+N + + Y MFFL +LL+ P
Sbjct: 282 ASSGKKHLLPTEVESILKDLWKNEARFCMLLCDFQKNMSSEPEKRRGYEMFFLSSLLVAP 341
Query: 420 SKFRPPAFAVRGVVEHPQNLLLSKVQEANIAFRELITTDPDNPNIIRKWMDLQRSVTVLF 241
++FRP + G++EHPQ++LLSKVQE+N+A + ++ +++++WMDLQRSV VL+
Sbjct: 342 NRFRPSTSSSLGIMEHPQSVLLSKVQESNLALQHN-NASSNHMDVLQRWMDLQRSVNVLY 400
Query: 240 DSSKGLAKSERETNGIRQLLEKKAGILRQKMMGKRVNFACRSVISPDPYLAVNEIGIPPY 61
DSSKGLA+SE+ +GIRQLLEKK GILRQKMMGKRVN+ACRSVISPDPYLAVNEIGIPP
Sbjct: 401 DSSKGLARSEKNAHGIRQLLEKKEGILRQKMMGKRVNYACRSVISPDPYLAVNEIGIPPV 460
Query: 60 FALKLTYPERVTPWNVNKLR 1
FA +LTYPE+VTPWN +L+
Sbjct: 461 FATRLTYPEKVTPWNTKRLQ 480
>tpg|DAA45226.1| TPA: putative DNA-directed RNA polymerase family protein [Zea mays]
Length = 548
Score = 397 bits (1020), Expect = e-107
Identities = 209/431 (48%), Positives = 279/431 (64%), Gaps = 2/431 (0%)
Frame = -2
Query: 1314 DLTMGPFKDTDSCKSCGQLEYKCPGHCGHIELVKPVYNPLLFNNLKSLLNVVCFFCHKFR 1135
D MGP D D CKSCGQ +CPGH GHIEL KP++NPLLF +LK+LL+V CF CHKFR
Sbjct: 54 DPAMGPINDIDICKSCGQHSVRCPGHFGHIELAKPLFNPLLFMSLKNLLHVTCFHCHKFR 113
Query: 1134 FGNDKVKQYTEILTHIARGDVLAAKGREASAMHDVFFAEGSEGENDIKEKSATTCELATD 955
++V +Y L + +GD++ AK E S + + + ++ E N T+ + ++
Sbjct: 114 LNKEQVDRYVNELELLVKGDIVCAKNLEDS-VEEAYLSKEDENMN-----KTTSGDNSSS 167
Query: 954 CKDAKKNTWTSLQYAEAISSISVMMKSRAK-CANCGKNNPKISSPTFGWLCKTVKDSDIR 778
KD K TWTS+Q E +S S +MK R K CA C +P ISSP FGWL K K S +R
Sbjct: 168 VKD--KKTWTSIQLKEVLSIFSKIMKKRQKKCAKCDMKSPTISSPIFGWLVKDTKASAVR 225
Query: 777 ANFIRESNVGLPSTXXXXXXXXXXXXASQSDEELSTDSAPTNVS-QQLRNLPPEVFERLY 601
N I + + S +EE S+ + S ++R L + + L
Sbjct: 226 TNAIADFKL----KGDGDIHNSGETGVSGLEEESSSPGMVSKDSINEVRGLSDDTIKELV 281
Query: 600 SSSGQKHLLPLEAELIFEGLWRNEPQLCSLICDIQQNKLNLSGNNKAYAMFFLKALLIPP 421
+SSG+KHLLP E E I + LW+NE + C L+CD Q+N + + Y MFFL +LL+ P
Sbjct: 282 ASSGKKHLLPTEVESILKDLWKNEARFCMLLCDFQKNMSSEPEKRRGYEMFFLSSLLVAP 341
Query: 420 SKFRPPAFAVRGVVEHPQNLLLSKVQEANIAFRELITTDPDNPNIIRKWMDLQRSVTVLF 241
++FRP + G++EHPQ++LLSKVQE+N+A + ++ +++++WMDLQRSV VL+
Sbjct: 342 NRFRPSTSSSLGIMEHPQSVLLSKVQESNLALQHN-NASSNHMDVLQRWMDLQRSVNVLY 400
Query: 240 DSSKGLAKSERETNGIRQLLEKKAGILRQKMMGKRVNFACRSVISPDPYLAVNEIGIPPY 61
DSSKGLA+SE+ +GIRQLLEKK GILRQKMMGKRVN+ACRSVISPDPYLAVNEIGIPP
Sbjct: 401 DSSKGLARSEKNAHGIRQLLEKKEGILRQKMMGKRVNYACRSVISPDPYLAVNEIGIPPV 460
Query: 60 FALKLTYPERV 28
FA +LTYPE V
Sbjct: 461 FATRLTYPEVV 471
>emb|CBI29879.3| unnamed protein product [Vitis vinifera]
Length = 1669
Score = 375 bits (962), Expect = e-101
Identities = 207/451 (45%), Positives = 270/451 (59%), Gaps = 12/451 (2%)
Frame = -2
Query: 1317 YDLTMGPFKDTDSCKSCGQLEYKCPGHCGHIELVKPVYNPLLFNNLKSLLNVVCFFCHKF 1138
YD +G + C+SCGQ + CPGHCGHI+LV VYNPLLFN L +LL CFFCH F
Sbjct: 51 YDPALGSIDENTPCQSCGQRSFYCPGHCGHIDLVSSVYNPLLFNLLHNLLQKTCFFCHHF 110
Query: 1137 RFGNDKVKQYTEILTHIARGDVLAAKGREASAMHDVFFAEGSEGENDIKEKSATTCELAT 958
+ + V++Y L I++GDV+ AK ++ + + + E S+G + + S
Sbjct: 111 KTSSSLVQKYVSQLELISKGDVVGAKNLDSISPSESSYPEDSDGSH-VSCSSTVNSSARD 169
Query: 957 DCK-DAKKNTWTSLQYAEAISSISVMMKSRAK-CANCGKNNPKISSPTFGWLCKT-VKDS 787
+C K+ WTSLQ EA+S + +K + + C NC +P+++ PTFGW + D+
Sbjct: 170 NCSVHLKQQEWTSLQCIEAMSVMDNFLKLKHRDCKNCKAKSPQVTKPTFGWFHMAGLSDA 229
Query: 786 DIRANFIRESNVGLPSTXXXXXXXXXXXXASQSDEELS----TDSAPTNVSQQLRN---- 631
RAN IR S + P +DE S TD V+++L
Sbjct: 230 QTRANVIRGSKLERPLNGV------------DTDETHSSIAPTDGIQDTVTKRLERKGAQ 277
Query: 630 LPPEVFERLYSSSGQKHLLPLEAELIFEGLWRNEPQLCSLICDIQQNKLNLSGNNKAYAM 451
P E ++ SG LLP E I E LW NE +LCS I DI Q +L SGN Y+M
Sbjct: 278 APIEFIKQKSFFSGP--LLPSEVRDIMERLWENEAELCSFISDILQERLGASGNKAGYSM 335
Query: 450 FFLKALLIPPSKFRPPAFAVRGVVEHPQNLLLSKVQEANIAFRELITTDPDNPNIIRKWM 271
FFL+ +L+PP KFRPP+ V+EHPQ +LL KV +ANIA + + II +WM
Sbjct: 336 FFLETILVPPIKFRPPSKGQISVMEHPQTVLLGKVLQANIALGNAHANNSERSKIISRWM 395
Query: 270 DLQRSVTVLFDSSKGLAKSERET-NGIRQLLEKKAGILRQKMMGKRVNFACRSVISPDPY 94
DLQ+S+ VLFD + +R+T +GI QLLEKK G+ RQKMMGKRVNFACRSVISPDPY
Sbjct: 396 DLQQSINVLFDGKTAAGQGQRDTGSGICQLLEKKEGVFRQKMMGKRVNFACRSVISPDPY 455
Query: 93 LAVNEIGIPPYFALKLTYPERVTPWNVNKLR 1
LAVNEIGIPPYFAL+LTYPE+VTPWNV KLR
Sbjct: 456 LAVNEIGIPPYFALRLTYPEKVTPWNVVKLR 486
>emb|CDP10074.1| unnamed protein product [Coffea canephora]
Length = 1680
Score = 374 bits (960), Expect = e-100
Identities = 206/455 (45%), Positives = 271/455 (59%), Gaps = 16/455 (3%)
Frame = -2
Query: 1317 YDLTMGPFKDTDSCKSCGQLEYKCPGHCGHIELVKPVYNPLLFNNLKSLLNVVCFFCHKF 1138
YD MGPF + CKSCGQ + C GHCGHIELV P YNPLLFN L +LL CF+C F
Sbjct: 52 YDPAMGPFDEQSPCKSCGQRSFHCTGHCGHIELVSPAYNPLLFNMLYNLLQRTCFYCFHF 111
Query: 1137 RFGNDKVKQYTEILTHIARGDVLAAKGREASAMHDVFFAEGSEGENDIKEKSATTCELAT 958
R ++V + L IA+GDV+ AK +A++ D+ +E SEG + E
Sbjct: 112 RSSTEEVDKCVLQLERIAKGDVIGAKRLDAASSADLDNSEDSEGSHVSCGNVYHGAE--- 168
Query: 957 DCKDAKKNTWTSLQYAEAISSISVMMKSR-AKCANCGKNNPKISSPTFGWLCKTVKDSDI 781
+ K+ +W S Q+ EA+S +++ +K + +KC C NPKI PTFGW V +++
Sbjct: 169 --EHMKQPSWDSFQFTEAMSVLNMFLKPKLSKCGKCEAKNPKIKKPTFGWFHMVVSNAET 226
Query: 780 RANFIRESNVG---------LPSTXXXXXXXXXXXXASQSDEELS---TDSAPTNVSQQL 637
RAN IR + S+ SQ+ + S +D T V+++
Sbjct: 227 RANIIRGHRLDGFRSGGSEERSSSEVVNANDSLWEDDSQTGKTASYTVSDGIDTPVAKKS 286
Query: 636 RNLPPEVFERL--YSSSGQKHLLPLEAELIFEGLWRNEPQLCSLICDIQQNKLNLSGNNK 463
N P V E L + +HLLP E + + LW NE LCS ICD+Q+ + N +
Sbjct: 287 PNQPGRVGEELKKQKEAFSEHLLPSEVRDVVKRLWENEAPLCSFICDLQREQHNSAAGIA 346
Query: 462 AYAMFFLKALLIPPSKFRPPAFAVRGVVEHPQNLLLSKVQEANIAFRELITTDPDNPNII 283
Y+MFFL ++L+PP KFRP A V+EHP LLSKV ++NIA + + I+
Sbjct: 347 GYSMFFLDSILVPPIKFRPLARTGDAVMEHPHTNLLSKVLQSNIALGNAYINNAERYKIV 406
Query: 282 RKWMDLQRSVTVLFDSSKGLAKSERETN-GIRQLLEKKAGILRQKMMGKRVNFACRSVIS 106
+WMDLQ+S++VL+DS +S++ GI QLLEKK GI RQKMMGKRVNFACRSVIS
Sbjct: 407 NRWMDLQQSISVLYDSKTTTGQSQKAGPVGICQLLEKKEGIFRQKMMGKRVNFACRSVIS 466
Query: 105 PDPYLAVNEIGIPPYFALKLTYPERVTPWNVNKLR 1
PDPYLAVNEIG+PPYFAL+LTYPERVTPWNV KLR
Sbjct: 467 PDPYLAVNEIGVPPYFALRLTYPERVTPWNVGKLR 501