BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Ophiopogon21_contig00011526
         (1648 letters)

Database: ./nr 
           77,306,371 sequences; 28,104,191,420 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_010935175.1| PREDICTED: RNA pseudouridine synthase 2, chl...   294   2e-76
ref|XP_010935174.1| PREDICTED: RNA pseudouridine synthase 2, chl...   294   2e-76
ref|XP_008806146.1| PREDICTED: RNA pseudouridine synthase 2, chl...   290   3e-75
ref|XP_008806144.1| PREDICTED: RNA pseudouridine synthase 2, chl...   290   3e-75
ref|XP_009382727.1| PREDICTED: RNA pseudouridine synthase 2, chl...   289   6e-75
ref|XP_010241332.1| PREDICTED: RNA pseudouridine synthase 2, chl...   253   5e-64
ref|XP_010241331.1| PREDICTED: RNA pseudouridine synthase 2, chl...   253   5e-64
ref|XP_010241330.1| PREDICTED: RNA pseudouridine synthase 2, chl...   253   5e-64
ref|XP_010241329.1| PREDICTED: RNA pseudouridine synthase 2, chl...   253   5e-64
ref|XP_010241328.1| PREDICTED: RNA pseudouridine synthase 2, chl...   253   5e-64
ref|XP_008445320.1| PREDICTED: RNA pseudouridine synthase 2, chl...   243   3e-61
ref|XP_008445318.1| PREDICTED: RNA pseudouridine synthase 2, chl...   243   3e-61
ref|XP_011034961.1| PREDICTED: RNA pseudouridine synthase 2, chl...   242   6e-61
ref|XP_002301949.1| pseudouridine synthase family protein [Popul...   242   6e-61
ref|XP_006656497.1| PREDICTED: RNA pseudouridine synthase 2, chl...   242   8e-61
ref|XP_010063294.1| PREDICTED: RNA pseudouridine synthase 2, chl...   241   1e-60
gb|KCW70505.1| hypothetical protein EUGRSUZ_F03712 [Eucalyptus g...   241   1e-60
ref|XP_002439034.1| hypothetical protein SORBIDRAFT_10g030300 [S...   241   1e-60
ref|XP_004966473.1| PREDICTED: RNA pseudouridine synthase 2, chl...   238   9e-60
ref|XP_011649467.1| PREDICTED: RNA pseudouridine synthase 2, chl...   238   1e-59

>ref|XP_010935175.1| PREDICTED: RNA pseudouridine synthase 2, chloroplastic isoform X2
            [Elaeis guineensis]
          Length = 445

 Score =  294 bits (752), Expect = 2e-76
 Identities = 159/249 (63%), Positives = 184/249 (73%), Gaps = 5/249 (2%)
 Frame = -3

Query: 1583 LSLTAGSTTSPFFFLLKLRRRNPE--VSKLLCCXXXXXXXXXXXXXXPQSVRV---NYTG 1419
            LSL A  ++S   F L L RR+P   VSK LC                +  RV   N+ G
Sbjct: 16   LSLPAAGSSSQLSFSLDLLRRDPRDRVSKALCSSTSTSSRDSNPEPFQRQQRVITGNHAG 75

Query: 1418 LRFEASVDSGSAKARVDSWIASRIQGVSRARIESSIRSGLVAVNGITVHKVSHRIKEGDK 1239
            LR E  V+ G+ K R+DSWI+SRI+ VSRARI+SSIRSGLV VNG TV KVSH IK GD 
Sbjct: 76   LRLEERVEIGAEKTRLDSWISSRIETVSRARIQSSIRSGLVTVNGRTVDKVSHIIKGGDM 135

Query: 1238 VSCVVSELQPLRAEPEDIPLDIVYEDAHVLVVNKPAHMVVHPAPGNANGTLVNAVLNHCK 1059
            VSC VSELQPLRAE EDIPLDIVYEDAHVLVVNKPAHMVVHPAPGNANGTLVNA+L+HC+
Sbjct: 136  VSCTVSELQPLRAEAEDIPLDIVYEDAHVLVVNKPAHMVVHPAPGNANGTLVNAILHHCR 195

Query: 1058 LPMVAHTNNKRSMETEEYIESSDSENEDFLIDQSSVEEFKSENNDALVRPGIVHRLDKGT 879
            LP +A  N  +  E+E+  ESSDSE +++  DQSSVE   SEN++ALVRPGIVHRLDKGT
Sbjct: 196  LPTIACVNKSKISESEDCSESSDSEMDNYYFDQSSVEGISSENSEALVRPGIVHRLDKGT 255

Query: 878  SGLLVIAKN 852
            SGLLV+AK+
Sbjct: 256  SGLLVVAKD 264



 Score =  156 bits (394), Expect(2) = 7e-57
 Identities = 71/112 (63%), Positives = 85/112 (75%)
 Frame = -1

Query: 388 VVEIFADGGSALVQWRLETGRTHQIRAHAKYLGVPLLGDELYGGTKGMAXXXXXXXXXXX 209
           ++E+   GGSALV+WRLETGRTHQIRAHAKY+G+PLLGDE+YGGTK MA           
Sbjct: 330 IIELLGRGGSALVEWRLETGRTHQIRAHAKYMGIPLLGDEVYGGTKSMALSLLRPRTSSS 389

Query: 208 XXXXXXRMISRLQRPCLHALYLGFTHPHTGEYLKFSCPPPDDFSEALSVLRS 53
                 +++S+LQRPCLHA  LGF HPHTGEYL+FSCPPPDDF+E L  L+S
Sbjct: 390 HHGHLSQILSKLQRPCLHASSLGFKHPHTGEYLRFSCPPPDDFAEVLDQLQS 441



 Score = 94.7 bits (234), Expect(2) = 7e-57
 Identities = 47/60 (78%), Positives = 51/60 (85%)
 Frame = -2

Query: 576 QDEHSHSHLAEQFKRHTIHRMYISLTSGVPYRGSGRIEIPIARDSSNRIRMAAVPVLKNS 397
           +DEHSH+HLAEQFK HTIHR+YISLT GVP   SGRIEIPIARDS+NRIRMAAV    NS
Sbjct: 263 KDEHSHAHLAEQFKLHTIHRVYISLTCGVPNPSSGRIEIPIARDSNNRIRMAAVLGTSNS 322


>ref|XP_010935174.1| PREDICTED: RNA pseudouridine synthase 2, chloroplastic isoform X1
            [Elaeis guineensis]
          Length = 449

 Score =  294 bits (752), Expect = 2e-76
 Identities = 159/249 (63%), Positives = 184/249 (73%), Gaps = 5/249 (2%)
 Frame = -3

Query: 1583 LSLTAGSTTSPFFFLLKLRRRNPE--VSKLLCCXXXXXXXXXXXXXXPQSVRV---NYTG 1419
            LSL A  ++S   F L L RR+P   VSK LC                +  RV   N+ G
Sbjct: 16   LSLPAAGSSSQLSFSLDLLRRDPRDRVSKALCSSTSTSSRDSNPEPFQRQQRVITGNHAG 75

Query: 1418 LRFEASVDSGSAKARVDSWIASRIQGVSRARIESSIRSGLVAVNGITVHKVSHRIKEGDK 1239
            LR E  V+ G+ K R+DSWI+SRI+ VSRARI+SSIRSGLV VNG TV KVSH IK GD 
Sbjct: 76   LRLEERVEIGAEKTRLDSWISSRIETVSRARIQSSIRSGLVTVNGRTVDKVSHIIKGGDM 135

Query: 1238 VSCVVSELQPLRAEPEDIPLDIVYEDAHVLVVNKPAHMVVHPAPGNANGTLVNAVLNHCK 1059
            VSC VSELQPLRAE EDIPLDIVYEDAHVLVVNKPAHMVVHPAPGNANGTLVNA+L+HC+
Sbjct: 136  VSCTVSELQPLRAEAEDIPLDIVYEDAHVLVVNKPAHMVVHPAPGNANGTLVNAILHHCR 195

Query: 1058 LPMVAHTNNKRSMETEEYIESSDSENEDFLIDQSSVEEFKSENNDALVRPGIVHRLDKGT 879
            LP +A  N  +  E+E+  ESSDSE +++  DQSSVE   SEN++ALVRPGIVHRLDKGT
Sbjct: 196  LPTIACVNKSKISESEDCSESSDSEMDNYYFDQSSVEGISSENSEALVRPGIVHRLDKGT 255

Query: 878  SGLLVIAKN 852
            SGLLV+AK+
Sbjct: 256  SGLLVVAKD 264



 Score =  161 bits (407), Expect(2) = 2e-58
 Identities = 74/114 (64%), Positives = 87/114 (76%)
 Frame = -1

Query: 394 YKVVEIFADGGSALVQWRLETGRTHQIRAHAKYLGVPLLGDELYGGTKGMAXXXXXXXXX 215
           YKV+E+   GGSALV+WRLETGRTHQIRAHAKY+G+PLLGDE+YGGTK MA         
Sbjct: 332 YKVIELLGRGGSALVEWRLETGRTHQIRAHAKYMGIPLLGDEVYGGTKSMALSLLRPRTS 391

Query: 214 XXXXXXXXRMISRLQRPCLHALYLGFTHPHTGEYLKFSCPPPDDFSEALSVLRS 53
                   +++S+LQRPCLHA  LGF HPHTGEYL+FSCPPPDDF+E L  L+S
Sbjct: 392 SSHHGHLSQILSKLQRPCLHASSLGFKHPHTGEYLRFSCPPPDDFAEVLDQLQS 445



 Score = 94.7 bits (234), Expect(2) = 2e-58
 Identities = 47/60 (78%), Positives = 51/60 (85%)
 Frame = -2

Query: 576 QDEHSHSHLAEQFKRHTIHRMYISLTSGVPYRGSGRIEIPIARDSSNRIRMAAVPVLKNS 397
           +DEHSH+HLAEQFK HTIHR+YISLT GVP   SGRIEIPIARDS+NRIRMAAV    NS
Sbjct: 263 KDEHSHAHLAEQFKLHTIHRVYISLTCGVPNPSSGRIEIPIARDSNNRIRMAAVLGTSNS 322


>ref|XP_008806146.1| PREDICTED: RNA pseudouridine synthase 2, chloroplastic isoform X3
            [Phoenix dactylifera]
          Length = 395

 Score =  290 bits (741), Expect = 3e-75
 Identities = 159/251 (63%), Positives = 188/251 (74%), Gaps = 7/251 (2%)
 Frame = -3

Query: 1583 LSLTAGSTTSPF--FFLLKLRR-RNPEVSKLLCCXXXXXXXXXXXXXXPQS----VRVNY 1425
            LS+ A  ++SPF  F L  LRR R   VSK LC               PQ     +R N+
Sbjct: 4    LSIPAAGSSSPFSSFSLDLLRRDRRDRVSKALCSSPTTSSRDSNPEPSPQRPQRVLRGNH 63

Query: 1424 TGLRFEASVDSGSAKARVDSWIASRIQGVSRARIESSIRSGLVAVNGITVHKVSHRIKEG 1245
             GLR E SV+ G+ K R+DSWI+SRIQGVSRARI+SSIRSG V VNG TV KVSH IK G
Sbjct: 64   AGLRLEESVEIGAEKTRLDSWISSRIQGVSRARIQSSIRSGFVVVNGRTVDKVSHIIKGG 123

Query: 1244 DKVSCVVSELQPLRAEPEDIPLDIVYEDAHVLVVNKPAHMVVHPAPGNANGTLVNAVLNH 1065
            D VSC VSELQPLRA+ EDIPLDIVYEDA+VLVVNKPAHMVVHPAPGN NGTLV+A+L+H
Sbjct: 124  DMVSCTVSELQPLRAKAEDIPLDIVYEDAYVLVVNKPAHMVVHPAPGNVNGTLVSAILHH 183

Query: 1064 CKLPMVAHTNNKRSMETEEYIESSDSENEDFLIDQSSVEEFKSENNDALVRPGIVHRLDK 885
            C+LP +A  +N ++ E+EE  ESSD+E +++  DQSSVE   SEN++ALVRPGIVHRLDK
Sbjct: 184  CRLPTIACVSNSKNSESEECSESSDNEMDNYYFDQSSVEGVSSENSEALVRPGIVHRLDK 243

Query: 884  GTSGLLVIAKN 852
            GTSGLLV+AK+
Sbjct: 244  GTSGLLVVAKD 254



 Score = 95.5 bits (236), Expect(2) = 4e-38
 Identities = 47/60 (78%), Positives = 51/60 (85%)
 Frame = -2

Query: 576 QDEHSHSHLAEQFKRHTIHRMYISLTSGVPYRGSGRIEIPIARDSSNRIRMAAVPVLKNS 397
           +DEHSH+HLAEQFK HTIHR+YISLT GVP   SGRIEIPIARDS+NRIRMAAV    NS
Sbjct: 253 KDEHSHAHLAEQFKLHTIHRVYISLTCGVPNPSSGRIEIPIARDSNNRIRMAAVSGTSNS 312



 Score = 92.8 bits (229), Expect(2) = 4e-38
 Identities = 40/51 (78%), Positives = 47/51 (92%)
 Frame = -1

Query: 394 YKVVEIFADGGSALVQWRLETGRTHQIRAHAKYLGVPLLGDELYGGTKGMA 242
           YKV+++   GGS+LV+WRLETGRTHQIRAHAKYLG+PLLGDE+YGGTK MA
Sbjct: 322 YKVIKVLGGGGSSLVEWRLETGRTHQIRAHAKYLGIPLLGDEVYGGTKSMA 372


>ref|XP_008806144.1| PREDICTED: RNA pseudouridine synthase 2, chloroplastic isoform X1
            [Phoenix dactylifera]
          Length = 439

 Score =  290 bits (741), Expect = 3e-75
 Identities = 159/251 (63%), Positives = 188/251 (74%), Gaps = 7/251 (2%)
 Frame = -3

Query: 1583 LSLTAGSTTSPF--FFLLKLRR-RNPEVSKLLCCXXXXXXXXXXXXXXPQS----VRVNY 1425
            LS+ A  ++SPF  F L  LRR R   VSK LC               PQ     +R N+
Sbjct: 4    LSIPAAGSSSPFSSFSLDLLRRDRRDRVSKALCSSPTTSSRDSNPEPSPQRPQRVLRGNH 63

Query: 1424 TGLRFEASVDSGSAKARVDSWIASRIQGVSRARIESSIRSGLVAVNGITVHKVSHRIKEG 1245
             GLR E SV+ G+ K R+DSWI+SRIQGVSRARI+SSIRSG V VNG TV KVSH IK G
Sbjct: 64   AGLRLEESVEIGAEKTRLDSWISSRIQGVSRARIQSSIRSGFVVVNGRTVDKVSHIIKGG 123

Query: 1244 DKVSCVVSELQPLRAEPEDIPLDIVYEDAHVLVVNKPAHMVVHPAPGNANGTLVNAVLNH 1065
            D VSC VSELQPLRA+ EDIPLDIVYEDA+VLVVNKPAHMVVHPAPGN NGTLV+A+L+H
Sbjct: 124  DMVSCTVSELQPLRAKAEDIPLDIVYEDAYVLVVNKPAHMVVHPAPGNVNGTLVSAILHH 183

Query: 1064 CKLPMVAHTNNKRSMETEEYIESSDSENEDFLIDQSSVEEFKSENNDALVRPGIVHRLDK 885
            C+LP +A  +N ++ E+EE  ESSD+E +++  DQSSVE   SEN++ALVRPGIVHRLDK
Sbjct: 184  CRLPTIACVSNSKNSESEECSESSDNEMDNYYFDQSSVEGVSSENSEALVRPGIVHRLDK 243

Query: 884  GTSGLLVIAKN 852
            GTSGLLV+AK+
Sbjct: 244  GTSGLLVVAKD 254



 Score =  157 bits (397), Expect(2) = 2e-57
 Identities = 71/114 (62%), Positives = 87/114 (76%)
 Frame = -1

Query: 394 YKVVEIFADGGSALVQWRLETGRTHQIRAHAKYLGVPLLGDELYGGTKGMAXXXXXXXXX 215
           YKV+++   GGS+LV+WRLETGRTHQIRAHAKYLG+PLLGDE+YGGTK MA         
Sbjct: 322 YKVIKVLGGGGSSLVEWRLETGRTHQIRAHAKYLGIPLLGDEVYGGTKSMALSLLRPRTS 381

Query: 214 XXXXXXXXRMISRLQRPCLHALYLGFTHPHTGEYLKFSCPPPDDFSEALSVLRS 53
                   +++S++QRPCLHA  LGF HPHTGE+L+FSCPPPDDF+E L  L+S
Sbjct: 382 SSHHGHLSQILSKVQRPCLHASLLGFKHPHTGEHLRFSCPPPDDFAEVLDQLQS 435



 Score = 95.5 bits (236), Expect(2) = 2e-57
 Identities = 47/60 (78%), Positives = 51/60 (85%)
 Frame = -2

Query: 576 QDEHSHSHLAEQFKRHTIHRMYISLTSGVPYRGSGRIEIPIARDSSNRIRMAAVPVLKNS 397
           +DEHSH+HLAEQFK HTIHR+YISLT GVP   SGRIEIPIARDS+NRIRMAAV    NS
Sbjct: 253 KDEHSHAHLAEQFKLHTIHRVYISLTCGVPNPSSGRIEIPIARDSNNRIRMAAVSGTSNS 312


>ref|XP_009382727.1| PREDICTED: RNA pseudouridine synthase 2, chloroplastic [Musa
            acuminata subsp. malaccensis]
            gi|695071322|ref|XP_009382728.1| PREDICTED: RNA
            pseudouridine synthase 2, chloroplastic [Musa acuminata
            subsp. malaccensis]
          Length = 440

 Score =  289 bits (739), Expect = 6e-75
 Identities = 154/250 (61%), Positives = 187/250 (74%), Gaps = 4/250 (1%)
 Frame = -3

Query: 1589 TMLSLTAGSTTSPFFFLLKLRRRNPEVSKL----LCCXXXXXXXXXXXXXXPQSVRVNYT 1422
            TML L   + +S  F  L L RRNP  S++    L C               + +RVN+ 
Sbjct: 3    TMLPLLPAAASSSSFSSLNLLRRNPNRSRVPPRALQCSSYPDLDPESPPPRGE-IRVNHA 61

Query: 1421 GLRFEASVDSGSAKARVDSWIASRIQGVSRARIESSIRSGLVAVNGITVHKVSHRIKEGD 1242
            G+R E  V+ G+ K R+DSWI+SRI+GVSRARI+SSIRSGLVAVNG TV+KVSH IK GD
Sbjct: 62   GVRLEERVEVGAEKTRIDSWISSRIRGVSRARIQSSIRSGLVAVNGRTVNKVSHIIKGGD 121

Query: 1241 KVSCVVSELQPLRAEPEDIPLDIVYEDAHVLVVNKPAHMVVHPAPGNANGTLVNAVLNHC 1062
             VSC++S+L PL+AEPED+PLDIVYED HV+VVNKPAHMVVHPAPGNANGTLVNA+L+HC
Sbjct: 122  MVSCMISKLLPLKAEPEDMPLDIVYEDEHVIVVNKPAHMVVHPAPGNANGTLVNAILHHC 181

Query: 1061 KLPMVAHTNNKRSMETEEYIESSDSENEDFLIDQSSVEEFKSENNDALVRPGIVHRLDKG 882
            +LP+ A  NN +  +TEE  ESSDS+ E+   DQSS+EE   EN +ALVRPGIVHRLDKG
Sbjct: 182  RLPIRAFANNIQISDTEECSESSDSDIEEVCADQSSMEEVGIENYEALVRPGIVHRLDKG 241

Query: 881  TSGLLVIAKN 852
            TSGLLV+AK+
Sbjct: 242  TSGLLVVAKD 251



 Score =  162 bits (409), Expect(2) = 1e-58
 Identities = 76/114 (66%), Positives = 86/114 (75%)
 Frame = -1

Query: 394 YKVVEIFADGGSALVQWRLETGRTHQIRAHAKYLGVPLLGDELYGGTKGMAXXXXXXXXX 215
           YKV+E F  GG+ALVQWRLETGRTHQIRAHAKYLG+PLLGDE+YGGTK MA         
Sbjct: 319 YKVIEDFMGGGAALVQWRLETGRTHQIRAHAKYLGIPLLGDEVYGGTKDMALSLLRPRTP 378

Query: 214 XXXXXXXXRMISRLQRPCLHALYLGFTHPHTGEYLKFSCPPPDDFSEALSVLRS 53
                    +IS+LQRPCLHA  +GF HPHTGE+L+FSCPPPDDFS+ L  LRS
Sbjct: 379 PTYHGHLSNIISKLQRPCLHAFSIGFKHPHTGEFLQFSCPPPDDFSKVLDQLRS 432



 Score = 94.7 bits (234), Expect(2) = 1e-58
 Identities = 45/60 (75%), Positives = 52/60 (86%)
 Frame = -2

Query: 576 QDEHSHSHLAEQFKRHTIHRMYISLTSGVPYRGSGRIEIPIARDSSNRIRMAAVPVLKNS 397
           +D+HSH+HLAEQFK+HTIHR+Y+SLTSGVP    GRIEIPIARDS+NRIRM AV  L NS
Sbjct: 250 KDDHSHAHLAEQFKKHTIHRVYMSLTSGVPNPSYGRIEIPIARDSNNRIRMVAVSGLNNS 309


>ref|XP_010241332.1| PREDICTED: RNA pseudouridine synthase 2, chloroplastic isoform X5
            [Nelumbo nucifera]
          Length = 360

 Score =  253 bits (645), Expect = 5e-64
 Identities = 133/221 (60%), Positives = 165/221 (74%)
 Frame = -3

Query: 1445 QSVRVNYTGLRFEASVDSGSAKARVDSWIASRIQGVSRARIESSIRSGLVAVNGITVHKV 1266
            Q+ R N+ G+  E +V+  S K+R+DSWI+SRI G+SRAR++SSI+SGLV+VNG  + KV
Sbjct: 59   QNRRGNFAGVCLEDTVEISSVKSRIDSWISSRIPGISRARVQSSIKSGLVSVNGRIIDKV 118

Query: 1265 SHRIKEGDKVSCVVSELQPLRAEPEDIPLDIVYEDAHVLVVNKPAHMVVHPAPGNANGTL 1086
            SH I+ GDKV+C + ELQPLRAEPEDIPLDIVYED  VLVVNKPAHMVVHPAPGNANGTL
Sbjct: 119  SHVIRAGDKVNCTIKELQPLRAEPEDIPLDIVYEDESVLVVNKPAHMVVHPAPGNANGTL 178

Query: 1085 VNAVLNHCKLPMVAHTNNKRSMETEEYIESSDSENEDFLIDQSSVEEFKSENNDALVRPG 906
            VN +L+HC LPMVA TN+K   ET++    SD E++ F   Q S+EE  S   +  VRPG
Sbjct: 179  VNGILHHCSLPMVALTNSKVLSETDDI---SDDESDIFSSTQGSMEEVTSNICEVSVRPG 235

Query: 905  IVHRLDKGTSGLLVIAKNPPMSGVSRGKSAY*KLSECSKIH 783
            IVHRLDKGTSGLLV+AK+         + ++  LSE  K+H
Sbjct: 236  IVHRLDKGTSGLLVVAKD---------EHSHAHLSEQFKLH 267



 Score = 88.6 bits (218), Expect(2) = 1e-23
 Identities = 41/55 (74%), Positives = 48/55 (87%)
 Frame = -2

Query: 576 QDEHSHSHLAEQFKRHTIHRMYISLTSGVPYRGSGRIEIPIARDSSNRIRMAAVP 412
           +DEHSH+HL+EQFK HTI+R+Y+SLT GVP   SGRIE+PI RD SNRIRMAAVP
Sbjct: 252 KDEHSHAHLSEQFKLHTINRIYLSLTCGVPSLNSGRIEVPIGRDLSNRIRMAAVP 306



 Score = 50.8 bits (120), Expect(2) = 1e-23
 Identities = 21/27 (77%), Positives = 25/27 (92%)
 Frame = -1

Query: 394 YKVVEIFADGGSALVQWRLETGRTHQI 314
           Y+VVE+ A GGSALV+WRLETGRTHQ+
Sbjct: 321 YRVVEVLAGGGSALVEWRLETGRTHQV 347


>ref|XP_010241331.1| PREDICTED: RNA pseudouridine synthase 2, chloroplastic isoform X4
            [Nelumbo nucifera]
          Length = 361

 Score =  253 bits (645), Expect = 5e-64
 Identities = 133/221 (60%), Positives = 165/221 (74%)
 Frame = -3

Query: 1445 QSVRVNYTGLRFEASVDSGSAKARVDSWIASRIQGVSRARIESSIRSGLVAVNGITVHKV 1266
            Q+ R N+ G+  E +V+  S K+R+DSWI+SRI G+SRAR++SSI+SGLV+VNG  + KV
Sbjct: 59   QNRRGNFAGVCLEDTVEISSVKSRIDSWISSRIPGISRARVQSSIKSGLVSVNGRIIDKV 118

Query: 1265 SHRIKEGDKVSCVVSELQPLRAEPEDIPLDIVYEDAHVLVVNKPAHMVVHPAPGNANGTL 1086
            SH I+ GDKV+C + ELQPLRAEPEDIPLDIVYED  VLVVNKPAHMVVHPAPGNANGTL
Sbjct: 119  SHVIRAGDKVNCTIKELQPLRAEPEDIPLDIVYEDESVLVVNKPAHMVVHPAPGNANGTL 178

Query: 1085 VNAVLNHCKLPMVAHTNNKRSMETEEYIESSDSENEDFLIDQSSVEEFKSENNDALVRPG 906
            VN +L+HC LPMVA TN+K   ET++    SD E++ F   Q S+EE  S   +  VRPG
Sbjct: 179  VNGILHHCSLPMVALTNSKVLSETDDI---SDDESDIFSSTQGSMEEVTSNICEVSVRPG 235

Query: 905  IVHRLDKGTSGLLVIAKNPPMSGVSRGKSAY*KLSECSKIH 783
            IVHRLDKGTSGLLV+AK+         + ++  LSE  K+H
Sbjct: 236  IVHRLDKGTSGLLVVAKD---------EHSHAHLSEQFKLH 267



 Score = 88.6 bits (218), Expect(2) = 1e-23
 Identities = 41/55 (74%), Positives = 48/55 (87%)
 Frame = -2

Query: 576 QDEHSHSHLAEQFKRHTIHRMYISLTSGVPYRGSGRIEIPIARDSSNRIRMAAVP 412
           +DEHSH+HL+EQFK HTI+R+Y+SLT GVP   SGRIE+PI RD SNRIRMAAVP
Sbjct: 252 KDEHSHAHLSEQFKLHTINRIYLSLTCGVPSLNSGRIEVPIGRDLSNRIRMAAVP 306



 Score = 50.8 bits (120), Expect(2) = 1e-23
 Identities = 21/27 (77%), Positives = 25/27 (92%)
 Frame = -1

Query: 394 YKVVEIFADGGSALVQWRLETGRTHQI 314
           Y+VVE+ A GGSALV+WRLETGRTHQ+
Sbjct: 321 YRVVEVLAGGGSALVEWRLETGRTHQV 347


>ref|XP_010241330.1| PREDICTED: RNA pseudouridine synthase 2, chloroplastic isoform X3
            [Nelumbo nucifera]
          Length = 443

 Score =  253 bits (645), Expect = 5e-64
 Identities = 133/221 (60%), Positives = 165/221 (74%)
 Frame = -3

Query: 1445 QSVRVNYTGLRFEASVDSGSAKARVDSWIASRIQGVSRARIESSIRSGLVAVNGITVHKV 1266
            Q+ R N+ G+  E +V+  S K+R+DSWI+SRI G+SRAR++SSI+SGLV+VNG  + KV
Sbjct: 59   QNRRGNFAGVCLEDTVEISSVKSRIDSWISSRIPGISRARVQSSIKSGLVSVNGRIIDKV 118

Query: 1265 SHRIKEGDKVSCVVSELQPLRAEPEDIPLDIVYEDAHVLVVNKPAHMVVHPAPGNANGTL 1086
            SH I+ GDKV+C + ELQPLRAEPEDIPLDIVYED  VLVVNKPAHMVVHPAPGNANGTL
Sbjct: 119  SHVIRAGDKVNCTIKELQPLRAEPEDIPLDIVYEDESVLVVNKPAHMVVHPAPGNANGTL 178

Query: 1085 VNAVLNHCKLPMVAHTNNKRSMETEEYIESSDSENEDFLIDQSSVEEFKSENNDALVRPG 906
            VN +L+HC LPMVA TN+K   ET++    SD E++ F   Q S+EE  S   +  VRPG
Sbjct: 179  VNGILHHCSLPMVALTNSKVLSETDDI---SDDESDIFSSTQGSMEEVTSNICEVSVRPG 235

Query: 905  IVHRLDKGTSGLLVIAKNPPMSGVSRGKSAY*KLSECSKIH 783
            IVHRLDKGTSGLLV+AK+         + ++  LSE  K+H
Sbjct: 236  IVHRLDKGTSGLLVVAKD---------EHSHAHLSEQFKLH 267



 Score =  159 bits (402), Expect(2) = 6e-56
 Identities = 74/114 (64%), Positives = 87/114 (76%)
 Frame = -1

Query: 394 YKVVEIFADGGSALVQWRLETGRTHQIRAHAKYLGVPLLGDELYGGTKGMAXXXXXXXXX 215
           Y+VVE+ A GGSALV+WRLETGRTHQIRAHAKYLG+PLLGDE+YGGT+ MA         
Sbjct: 321 YRVVEVLAGGGSALVEWRLETGRTHQIRAHAKYLGIPLLGDEVYGGTRNMALSLLRTRSH 380

Query: 214 XXXXXXXXRMISRLQRPCLHALYLGFTHPHTGEYLKFSCPPPDDFSEALSVLRS 53
                   +++S+LQRPCLHA  LGF HPHTGE ++FSCPPP DF+E LS LRS
Sbjct: 381 SSFHGDLSQLVSKLQRPCLHAFTLGFKHPHTGENMQFSCPPPADFTEVLSQLRS 434



 Score = 88.6 bits (218), Expect(2) = 6e-56
 Identities = 41/55 (74%), Positives = 48/55 (87%)
 Frame = -2

Query: 576 QDEHSHSHLAEQFKRHTIHRMYISLTSGVPYRGSGRIEIPIARDSSNRIRMAAVP 412
           +DEHSH+HL+EQFK HTI+R+Y+SLT GVP   SGRIE+PI RD SNRIRMAAVP
Sbjct: 252 KDEHSHAHLSEQFKLHTINRIYLSLTCGVPSLNSGRIEVPIGRDLSNRIRMAAVP 306


>ref|XP_010241329.1| PREDICTED: RNA pseudouridine synthase 2, chloroplastic isoform X2
            [Nelumbo nucifera]
          Length = 453

 Score =  253 bits (645), Expect = 5e-64
 Identities = 133/221 (60%), Positives = 165/221 (74%)
 Frame = -3

Query: 1445 QSVRVNYTGLRFEASVDSGSAKARVDSWIASRIQGVSRARIESSIRSGLVAVNGITVHKV 1266
            Q+ R N+ G+  E +V+  S K+R+DSWI+SRI G+SRAR++SSI+SGLV+VNG  + KV
Sbjct: 59   QNRRGNFAGVCLEDTVEISSVKSRIDSWISSRIPGISRARVQSSIKSGLVSVNGRIIDKV 118

Query: 1265 SHRIKEGDKVSCVVSELQPLRAEPEDIPLDIVYEDAHVLVVNKPAHMVVHPAPGNANGTL 1086
            SH I+ GDKV+C + ELQPLRAEPEDIPLDIVYED  VLVVNKPAHMVVHPAPGNANGTL
Sbjct: 119  SHVIRAGDKVNCTIKELQPLRAEPEDIPLDIVYEDESVLVVNKPAHMVVHPAPGNANGTL 178

Query: 1085 VNAVLNHCKLPMVAHTNNKRSMETEEYIESSDSENEDFLIDQSSVEEFKSENNDALVRPG 906
            VN +L+HC LPMVA TN+K   ET++    SD E++ F   Q S+EE  S   +  VRPG
Sbjct: 179  VNGILHHCSLPMVALTNSKVLSETDDI---SDDESDIFSSTQGSMEEVTSNICEVSVRPG 235

Query: 905  IVHRLDKGTSGLLVIAKNPPMSGVSRGKSAY*KLSECSKIH 783
            IVHRLDKGTSGLLV+AK+         + ++  LSE  K+H
Sbjct: 236  IVHRLDKGTSGLLVVAKD---------EHSHAHLSEQFKLH 267



 Score =  159 bits (402), Expect(2) = 6e-56
 Identities = 74/114 (64%), Positives = 87/114 (76%)
 Frame = -1

Query: 394 YKVVEIFADGGSALVQWRLETGRTHQIRAHAKYLGVPLLGDELYGGTKGMAXXXXXXXXX 215
           Y+VVE+ A GGSALV+WRLETGRTHQIRAHAKYLG+PLLGDE+YGGT+ MA         
Sbjct: 321 YRVVEVLAGGGSALVEWRLETGRTHQIRAHAKYLGIPLLGDEVYGGTRNMALSLLRTRSH 380

Query: 214 XXXXXXXXRMISRLQRPCLHALYLGFTHPHTGEYLKFSCPPPDDFSEALSVLRS 53
                   +++S+LQRPCLHA  LGF HPHTGE ++FSCPPP DF+E LS LRS
Sbjct: 381 SSFHGDLSQLVSKLQRPCLHAFTLGFKHPHTGENMQFSCPPPADFTEVLSQLRS 434



 Score = 88.6 bits (218), Expect(2) = 6e-56
 Identities = 41/55 (74%), Positives = 48/55 (87%)
 Frame = -2

Query: 576 QDEHSHSHLAEQFKRHTIHRMYISLTSGVPYRGSGRIEIPIARDSSNRIRMAAVP 412
           +DEHSH+HL+EQFK HTI+R+Y+SLT GVP   SGRIE+PI RD SNRIRMAAVP
Sbjct: 252 KDEHSHAHLSEQFKLHTINRIYLSLTCGVPSLNSGRIEVPIGRDLSNRIRMAAVP 306


>ref|XP_010241328.1| PREDICTED: RNA pseudouridine synthase 2, chloroplastic isoform X1
            [Nelumbo nucifera]
          Length = 471

 Score =  253 bits (645), Expect = 5e-64
 Identities = 133/221 (60%), Positives = 165/221 (74%)
 Frame = -3

Query: 1445 QSVRVNYTGLRFEASVDSGSAKARVDSWIASRIQGVSRARIESSIRSGLVAVNGITVHKV 1266
            Q+ R N+ G+  E +V+  S K+R+DSWI+SRI G+SRAR++SSI+SGLV+VNG  + KV
Sbjct: 59   QNRRGNFAGVCLEDTVEISSVKSRIDSWISSRIPGISRARVQSSIKSGLVSVNGRIIDKV 118

Query: 1265 SHRIKEGDKVSCVVSELQPLRAEPEDIPLDIVYEDAHVLVVNKPAHMVVHPAPGNANGTL 1086
            SH I+ GDKV+C + ELQPLRAEPEDIPLDIVYED  VLVVNKPAHMVVHPAPGNANGTL
Sbjct: 119  SHVIRAGDKVNCTIKELQPLRAEPEDIPLDIVYEDESVLVVNKPAHMVVHPAPGNANGTL 178

Query: 1085 VNAVLNHCKLPMVAHTNNKRSMETEEYIESSDSENEDFLIDQSSVEEFKSENNDALVRPG 906
            VN +L+HC LPMVA TN+K   ET++    SD E++ F   Q S+EE  S   +  VRPG
Sbjct: 179  VNGILHHCSLPMVALTNSKVLSETDDI---SDDESDIFSSTQGSMEEVTSNICEVSVRPG 235

Query: 905  IVHRLDKGTSGLLVIAKNPPMSGVSRGKSAY*KLSECSKIH 783
            IVHRLDKGTSGLLV+AK+         + ++  LSE  K+H
Sbjct: 236  IVHRLDKGTSGLLVVAKD---------EHSHAHLSEQFKLH 267



 Score =  159 bits (402), Expect(2) = 6e-56
 Identities = 74/114 (64%), Positives = 87/114 (76%)
 Frame = -1

Query: 394 YKVVEIFADGGSALVQWRLETGRTHQIRAHAKYLGVPLLGDELYGGTKGMAXXXXXXXXX 215
           Y+VVE+ A GGSALV+WRLETGRTHQIRAHAKYLG+PLLGDE+YGGT+ MA         
Sbjct: 321 YRVVEVLAGGGSALVEWRLETGRTHQIRAHAKYLGIPLLGDEVYGGTRNMALSLLRTRSH 380

Query: 214 XXXXXXXXRMISRLQRPCLHALYLGFTHPHTGEYLKFSCPPPDDFSEALSVLRS 53
                   +++S+LQRPCLHA  LGF HPHTGE ++FSCPPP DF+E LS LRS
Sbjct: 381 SSFHGDLSQLVSKLQRPCLHAFTLGFKHPHTGENMQFSCPPPADFTEVLSQLRS 434



 Score = 88.6 bits (218), Expect(2) = 6e-56
 Identities = 41/55 (74%), Positives = 48/55 (87%)
 Frame = -2

Query: 576 QDEHSHSHLAEQFKRHTIHRMYISLTSGVPYRGSGRIEIPIARDSSNRIRMAAVP 412
           +DEHSH+HL+EQFK HTI+R+Y+SLT GVP   SGRIE+PI RD SNRIRMAAVP
Sbjct: 252 KDEHSHAHLSEQFKLHTINRIYLSLTCGVPSLNSGRIEVPIGRDLSNRIRMAAVP 306


>ref|XP_008445320.1| PREDICTED: RNA pseudouridine synthase 2, chloroplastic isoform X2
            [Cucumis melo]
          Length = 429

 Score =  243 bits (621), Expect = 3e-61
 Identities = 127/199 (63%), Positives = 152/199 (76%), Gaps = 1/199 (0%)
 Frame = -3

Query: 1445 QSVRV-NYTGLRFEASVDSGSAKARVDSWIASRIQGVSRARIESSIRSGLVAVNGITVHK 1269
            QS R+ NY G R E +VD    K R+DSWI+SRI G+SRAR++SSIR+GLV+VNG  + K
Sbjct: 53   QSERIANYAGTRLEETVDINPGKVRLDSWISSRINGISRARVQSSIRAGLVSVNGRVIDK 112

Query: 1268 VSHRIKEGDKVSCVVSELQPLRAEPEDIPLDIVYEDAHVLVVNKPAHMVVHPAPGNANGT 1089
            VSH +K GD ++C +SELQPLRAEPEDI LDIVYED HVLVVNKPAHMVVHPAPGNA GT
Sbjct: 113  VSHNVKAGDVINCTISELQPLRAEPEDIDLDIVYEDEHVLVVNKPAHMVVHPAPGNATGT 172

Query: 1088 LVNAVLNHCKLPMVAHTNNKRSMETEEYIESSDSENEDFLIDQSSVEEFKSENNDALVRP 909
            LVNA+LNHC LPMV       S  T E+   SD  +++F    SS+E F S  ++A +RP
Sbjct: 173  LVNAILNHCSLPMV-------STSTGEHQSDSDVSDDEF----SSIEVF-SRVSEAPIRP 220

Query: 908  GIVHRLDKGTSGLLVIAKN 852
            GIVHRLDKGTSGLLV+AK+
Sbjct: 221  GIVHRLDKGTSGLLVVAKD 239



 Score =  155 bits (391), Expect(2) = 3e-52
 Identities = 72/123 (58%), Positives = 87/123 (70%)
 Frame = -1

Query: 394 YKVVEIFADGGSALVQWRLETGRTHQIRAHAKYLGVPLLGDELYGGTKGMAXXXXXXXXX 215
           Y V+EI A GGS+LV+WRLETGRTHQIRAHAKY+G+PLLGDE+YGGTK MA         
Sbjct: 307 YNVMEILAQGGSSLVEWRLETGRTHQIRAHAKYMGIPLLGDEVYGGTKSMAMSLLRTRAS 366

Query: 214 XXXXXXXXRMISRLQRPCLHALYLGFTHPHTGEYLKFSCPPPDDFSEALSVLRSFPRQSA 35
                   +++S L+RPCLHAL LGF HPHTG+ ++FSCPPP DF+E LS LR    +  
Sbjct: 367 SNCHGQLMQLVSSLERPCLHALTLGFVHPHTGKNIRFSCPPPTDFAEILSQLREIGTKKV 426

Query: 34  VSS 26
             S
Sbjct: 427 TKS 429



 Score = 80.5 bits (197), Expect(2) = 3e-52
 Identities = 38/60 (63%), Positives = 47/60 (78%)
 Frame = -2

Query: 576 QDEHSHSHLAEQFKRHTIHRMYISLTSGVPYRGSGRIEIPIARDSSNRIRMAAVPVLKNS 397
           +DEHSH+HL+ QFK+H+I R+YISLT GVP   +GRIEIPI RD +NRIRM A    KN+
Sbjct: 238 KDEHSHAHLSAQFKQHSIERVYISLTCGVPPSTAGRIEIPICRDPNNRIRMTATHGTKNN 297


>ref|XP_008445318.1| PREDICTED: RNA pseudouridine synthase 2, chloroplastic isoform X1
            [Cucumis melo] gi|659089083|ref|XP_008445319.1|
            PREDICTED: RNA pseudouridine synthase 2, chloroplastic
            isoform X1 [Cucumis melo]
          Length = 431

 Score =  243 bits (621), Expect = 3e-61
 Identities = 127/199 (63%), Positives = 152/199 (76%), Gaps = 1/199 (0%)
 Frame = -3

Query: 1445 QSVRV-NYTGLRFEASVDSGSAKARVDSWIASRIQGVSRARIESSIRSGLVAVNGITVHK 1269
            QS R+ NY G R E +VD    K R+DSWI+SRI G+SRAR++SSIR+GLV+VNG  + K
Sbjct: 53   QSERIANYAGTRLEETVDINPGKVRLDSWISSRINGISRARVQSSIRAGLVSVNGRVIDK 112

Query: 1268 VSHRIKEGDKVSCVVSELQPLRAEPEDIPLDIVYEDAHVLVVNKPAHMVVHPAPGNANGT 1089
            VSH +K GD ++C +SELQPLRAEPEDI LDIVYED HVLVVNKPAHMVVHPAPGNA GT
Sbjct: 113  VSHNVKAGDVINCTISELQPLRAEPEDIDLDIVYEDEHVLVVNKPAHMVVHPAPGNATGT 172

Query: 1088 LVNAVLNHCKLPMVAHTNNKRSMETEEYIESSDSENEDFLIDQSSVEEFKSENNDALVRP 909
            LVNA+LNHC LPMV       S  T E+   SD  +++F    SS+E F S  ++A +RP
Sbjct: 173  LVNAILNHCSLPMV-------STSTGEHQSDSDVSDDEF----SSIEVF-SRVSEAPIRP 220

Query: 908  GIVHRLDKGTSGLLVIAKN 852
            GIVHRLDKGTSGLLV+AK+
Sbjct: 221  GIVHRLDKGTSGLLVVAKD 239



 Score =  154 bits (389), Expect(2) = 5e-52
 Identities = 71/113 (62%), Positives = 85/113 (75%)
 Frame = -1

Query: 394 YKVVEIFADGGSALVQWRLETGRTHQIRAHAKYLGVPLLGDELYGGTKGMAXXXXXXXXX 215
           Y V+EI A GGS+LV+WRLETGRTHQIRAHAKY+G+PLLGDE+YGGTK MA         
Sbjct: 307 YNVMEILAQGGSSLVEWRLETGRTHQIRAHAKYMGIPLLGDEVYGGTKSMAMSLLRTRAS 366

Query: 214 XXXXXXXXRMISRLQRPCLHALYLGFTHPHTGEYLKFSCPPPDDFSEALSVLR 56
                   +++S L+RPCLHAL LGF HPHTG+ ++FSCPPP DF+E LS LR
Sbjct: 367 SNCHGQLMQLVSSLERPCLHALTLGFVHPHTGKNIRFSCPPPTDFAEILSQLR 419



 Score = 80.5 bits (197), Expect(2) = 5e-52
 Identities = 38/60 (63%), Positives = 47/60 (78%)
 Frame = -2

Query: 576 QDEHSHSHLAEQFKRHTIHRMYISLTSGVPYRGSGRIEIPIARDSSNRIRMAAVPVLKNS 397
           +DEHSH+HL+ QFK+H+I R+YISLT GVP   +GRIEIPI RD +NRIRM A    KN+
Sbjct: 238 KDEHSHAHLSAQFKQHSIERVYISLTCGVPPSTAGRIEIPICRDPNNRIRMTATHGTKNN 297


>ref|XP_011034961.1| PREDICTED: RNA pseudouridine synthase 2, chloroplastic [Populus
            euphratica]
          Length = 416

 Score =  242 bits (618), Expect = 6e-61
 Identities = 138/269 (51%), Positives = 180/269 (66%), Gaps = 1/269 (0%)
 Frame = -3

Query: 1586 MLSLTAGSTTS-PFFFLLKLRRRNPEVSKLLCCXXXXXXXXXXXXXXPQSVRVNYTGLRF 1410
            MLS+++ S  S P FFL     + P  S+LL                 +  R+NY+G++ 
Sbjct: 1    MLSISSVSRCSAPSFFL----SQKPTASRLLTVHSSSTREPNSNQNPGE--RINYSGVKL 54

Query: 1409 EASVDSGSAKARVDSWIASRIQGVSRARIESSIRSGLVAVNGITVHKVSHRIKEGDKVSC 1230
            E SVDS S K+R+DSWI+SRI G+SRAR++SSI+SGLV+VNG  + KVSH +K GDKV+C
Sbjct: 55   EESVDSKSGKSRLDSWISSRISGISRARVQSSIKSGLVSVNGKVIDKVSHNVKAGDKVNC 114

Query: 1229 VVSELQPLRAEPEDIPLDIVYEDAHVLVVNKPAHMVVHPAPGNANGTLVNAVLNHCKLPM 1050
            V+SELQPLRAEPE+IPLDIVYED +VLVVNKPAHMVVHPAPGNA GTLVN +L+HC LP 
Sbjct: 115  VISELQPLRAEPENIPLDIVYEDENVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPT 174

Query: 1049 VAHTNNKRSMETEEYIESSDSENEDFLIDQSSVEEFKSENNDALVRPGIVHRLDKGTSGL 870
            V+         ++E +  ++  ++D        E   S ++ A VRPGIVHRLDKGTSGL
Sbjct: 175  VS---------SQEVLSGAEDVSDD-----DDDEGLCSSSHAASVRPGIVHRLDKGTSGL 220

Query: 869  LVIAKNPPMSGVSRGKSAY*KLSECSKIH 783
            LV+AK+         + ++  LSE  K+H
Sbjct: 221  LVVAKD---------EHSHAHLSEQFKLH 240



 Score =  149 bits (376), Expect(2) = 7e-51
 Identities = 71/113 (62%), Positives = 83/113 (73%)
 Frame = -1

Query: 394 YKVVEIFADGGSALVQWRLETGRTHQIRAHAKYLGVPLLGDELYGGTKGMAXXXXXXXXX 215
           YKV+EI A GGSALV+WRLETGRTHQIRAHAKY+G+PLLGDE+YGGT+ MA         
Sbjct: 293 YKVIEILARGGSALVEWRLETGRTHQIRAHAKYIGIPLLGDEVYGGTQNMALSLLRSRTQ 352

Query: 214 XXXXXXXXRMISRLQRPCLHALYLGFTHPHTGEYLKFSCPPPDDFSEALSVLR 56
                     +S L+RPCLHAL LGFTHP TG+ + F+CPPP DF+E LS LR
Sbjct: 353 PSCHRQLSLSLSGLERPCLHALALGFTHPCTGKEIHFACPPPPDFTEILSQLR 405



 Score = 81.6 bits (200), Expect(2) = 7e-51
 Identities = 37/54 (68%), Positives = 46/54 (85%)
 Frame = -2

Query: 576 QDEHSHSHLAEQFKRHTIHRMYISLTSGVPYRGSGRIEIPIARDSSNRIRMAAV 415
           +DEHSH+HL+EQFK HTI R+Y+SLT GVP   +GRI++PI RD SNRIRMAA+
Sbjct: 225 KDEHSHAHLSEQFKLHTIKRVYVSLTCGVPAPMAGRIDVPIGRDVSNRIRMAAI 278


>ref|XP_002301949.1| pseudouridine synthase family protein [Populus trichocarpa]
            gi|222843675|gb|EEE81222.1| pseudouridine synthase family
            protein [Populus trichocarpa]
          Length = 444

 Score =  242 bits (618), Expect = 6e-61
 Identities = 139/271 (51%), Positives = 180/271 (66%), Gaps = 1/271 (0%)
 Frame = -3

Query: 1592 RTMLSLTAGSTTS-PFFFLLKLRRRNPEVSKLLCCXXXXXXXXXXXXXXPQSVRVNYTGL 1416
            + MLS+++ S  S P FFL     + P  S+LL                 Q  R+NY+G+
Sbjct: 28   KRMLSISSVSRCSAPSFFL----SQKPTASRLLTVHSSSTREPNSNQNPGQ--RINYSGV 81

Query: 1415 RFEASVDSGSAKARVDSWIASRIQGVSRARIESSIRSGLVAVNGITVHKVSHRIKEGDKV 1236
            + E SVDS S K+R+DSWI+SRI G+SRAR++SSI+SGLV+VNG  + KVSH +K GDKV
Sbjct: 82   KLEESVDSKSGKSRLDSWISSRISGISRARVQSSIKSGLVSVNGKVIDKVSHNVKAGDKV 141

Query: 1235 SCVVSELQPLRAEPEDIPLDIVYEDAHVLVVNKPAHMVVHPAPGNANGTLVNAVLNHCKL 1056
            +CV+SELQPLRAEPE+IPLDIVYED +VLVVNKPAHMVVHPAPGNA GTLVN +L+HC L
Sbjct: 142  NCVISELQPLRAEPENIPLDIVYEDENVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSL 201

Query: 1055 PMVAHTNNKRSMETEEYIESSDSENEDFLIDQSSVEEFKSENNDALVRPGIVHRLDKGTS 876
            P V+         ++E +  ++  ++D        E   S +  A VRPGIVHRLDKGTS
Sbjct: 202  PTVS---------SQEVLSGAEDVSDD------DDEGLCSSSYAASVRPGIVHRLDKGTS 246

Query: 875  GLLVIAKNPPMSGVSRGKSAY*KLSECSKIH 783
            GLLV+AK+         + ++  LSE  K+H
Sbjct: 247  GLLVVAKD---------EHSHAHLSEQFKLH 268



 Score =  150 bits (380), Expect(2) = 2e-51
 Identities = 72/113 (63%), Positives = 83/113 (73%)
 Frame = -1

Query: 394 YKVVEIFADGGSALVQWRLETGRTHQIRAHAKYLGVPLLGDELYGGTKGMAXXXXXXXXX 215
           YKV+EI A GGSALV+WRLETGRTHQIRAHAKY+G+PLLGDE+YGGT+ MA         
Sbjct: 321 YKVIEILAGGGSALVEWRLETGRTHQIRAHAKYIGIPLLGDEVYGGTQNMALSLLRSRTQ 380

Query: 214 XXXXXXXXRMISRLQRPCLHALYLGFTHPHTGEYLKFSCPPPDDFSEALSVLR 56
                     +S L+RPCLHAL LGFTHP TG+ + FSCPPP DF+E LS LR
Sbjct: 381 PSCHRQLSLSLSGLERPCLHALALGFTHPCTGKEIHFSCPPPPDFTEILSQLR 433



 Score = 81.6 bits (200), Expect(2) = 2e-51
 Identities = 37/54 (68%), Positives = 46/54 (85%)
 Frame = -2

Query: 576 QDEHSHSHLAEQFKRHTIHRMYISLTSGVPYRGSGRIEIPIARDSSNRIRMAAV 415
           +DEHSH+HL+EQFK HTI R+Y+SLT GVP   +GRI++PI RD SNRIRMAA+
Sbjct: 253 KDEHSHAHLSEQFKLHTIKRVYVSLTCGVPAPMAGRIDVPIGRDVSNRIRMAAI 306


>ref|XP_006656497.1| PREDICTED: RNA pseudouridine synthase 2, chloroplastic-like [Oryza
            brachyantha]
          Length = 442

 Score =  242 bits (617), Expect = 8e-61
 Identities = 126/199 (63%), Positives = 154/199 (77%), Gaps = 2/199 (1%)
 Frame = -3

Query: 1442 SVRVNYTGLRFEASVDSGSAKARVDSWIASRIQG--VSRARIESSIRSGLVAVNGITVHK 1269
            S R  + G R E +V +G  ++R+D+WI+SR+ G  VSRAR+++SIR+GLVAVNG  V K
Sbjct: 49   SRRGGHGGTRLEEAVPAGEGRSRIDAWISSRLGGGGVSRARVQASIRAGLVAVNGRPVSK 108

Query: 1268 VSHRIKEGDKVSCVVSELQPLRAEPEDIPLDIVYEDAHVLVVNKPAHMVVHPAPGNANGT 1089
            VSH +K GD VSC VSELQPLRAEPEDIPLDIVYED H+LVVNKPAHMVVHPAPGNANGT
Sbjct: 109  VSHMVKGGDMVSCTVSELQPLRAEPEDIPLDIVYEDQHLLVVNKPAHMVVHPAPGNANGT 168

Query: 1088 LVNAVLNHCKLPMVAHTNNKRSMETEEYIESSDSENEDFLIDQSSVEEFKSENNDALVRP 909
            LVNA+L+HCK+     T   R+   +E  +SSD + + F +DQ +  E  SE  +ALVRP
Sbjct: 169  LVNAILHHCKIS--TFTCLARNSTDDECPDSSDDDIDVFHVDQFTTGEVSSEVREALVRP 226

Query: 908  GIVHRLDKGTSGLLVIAKN 852
            GIVHRLDKGTSGLLV+AK+
Sbjct: 227  GIVHRLDKGTSGLLVVAKD 245



 Score =  154 bits (389), Expect(2) = 1e-52
 Identities = 71/113 (62%), Positives = 84/113 (74%)
 Frame = -1

Query: 394 YKVVEIFADGGSALVQWRLETGRTHQIRAHAKYLGVPLLGDELYGGTKGMAXXXXXXXXX 215
           YKV E+FA GGSALV+W+LETGRTHQIRAHAKYLG+PLLGDE YGGTK MA         
Sbjct: 312 YKVREVFAGGGSALVEWKLETGRTHQIRAHAKYLGIPLLGDETYGGTKSMALSLLRPRTS 371

Query: 214 XXXXXXXXRMISRLQRPCLHALYLGFTHPHTGEYLKFSCPPPDDFSEALSVLR 56
                    +I+++ RPCLHA  LGF HPH+G+ L+FSCPPPDDF+E L+ LR
Sbjct: 372 SRYHCDLSNLIAKIDRPCLHAALLGFKHPHSGKILEFSCPPPDDFTEVLNELR 424



 Score = 82.8 bits (203), Expect(2) = 1e-52
 Identities = 39/55 (70%), Positives = 44/55 (80%)
 Frame = -2

Query: 576 QDEHSHSHLAEQFKRHTIHRMYISLTSGVPYRGSGRIEIPIARDSSNRIRMAAVP 412
           +DEHSH+ LAEQFK HTI R+YISLT G P   SGRIE+PIARD +NRIRM A P
Sbjct: 244 KDEHSHAQLAEQFKLHTIRRVYISLTCGAPNPNSGRIEVPIARDPNNRIRMIATP 298


>ref|XP_010063294.1| PREDICTED: RNA pseudouridine synthase 2, chloroplastic [Eucalyptus
            grandis] gi|702379712|ref|XP_010063295.1| PREDICTED: RNA
            pseudouridine synthase 2, chloroplastic [Eucalyptus
            grandis] gi|702379717|ref|XP_010063296.1| PREDICTED: RNA
            pseudouridine synthase 2, chloroplastic [Eucalyptus
            grandis] gi|702379720|ref|XP_010063297.1| PREDICTED: RNA
            pseudouridine synthase 2, chloroplastic [Eucalyptus
            grandis]
          Length = 454

 Score =  241 bits (615), Expect = 1e-60
 Identities = 122/193 (63%), Positives = 147/193 (76%), Gaps = 1/193 (0%)
 Frame = -3

Query: 1427 YTGLRFEASVDSGS-AKARVDSWIASRIQGVSRARIESSIRSGLVAVNGITVHKVSHRIK 1251
            Y G+R   +VD+    K R+D+WI+SRIQGVSRAR++SSIRSGLV+VNG  V KVSH ++
Sbjct: 74   YAGVRLRETVDAAKPGKLRLDAWISSRIQGVSRARVQSSIRSGLVSVNGRVVDKVSHNVR 133

Query: 1250 EGDKVSCVVSELQPLRAEPEDIPLDIVYEDAHVLVVNKPAHMVVHPAPGNANGTLVNAVL 1071
             GD V C +SELQPLRAEPEDIP+DIVYED HVLVVNKPAHMVVHPAPGNA+GTLVNA+L
Sbjct: 134  AGDMVDCTISELQPLRAEPEDIPVDIVYEDEHVLVVNKPAHMVVHPAPGNASGTLVNAIL 193

Query: 1070 NHCKLPMVAHTNNKRSMETEEYIESSDSENEDFLIDQSSVEEFKSENNDALVRPGIVHRL 891
            +HC LP VA +  +   E E+    SD E+      ++S + F S  +   VRPGIVHRL
Sbjct: 194  HHCSLPTVAFSETELLSEGEDV---SDDESSSSTACETSTKGFNSSESGGSVRPGIVHRL 250

Query: 890  DKGTSGLLVIAKN 852
            DKGTSGLLV+AKN
Sbjct: 251  DKGTSGLLVVAKN 263



 Score =  148 bits (373), Expect(2) = 7e-51
 Identities = 68/113 (60%), Positives = 83/113 (73%)
 Frame = -1

Query: 394 YKVVEIFADGGSALVQWRLETGRTHQIRAHAKYLGVPLLGDELYGGTKGMAXXXXXXXXX 215
           YKV+E+ A G SALV+WRLETGRTHQIRAHAKY+G+PLLGDE+YGGTK M          
Sbjct: 331 YKVIEVLAGGSSALVEWRLETGRTHQIRAHAKYVGIPLLGDEVYGGTKNMILSLLQAKLP 390

Query: 214 XXXXXXXXRMISRLQRPCLHALYLGFTHPHTGEYLKFSCPPPDDFSEALSVLR 56
                    ++S+L+RPCLHA+ LGF HP+TGE ++FSC PP+DFSE L  LR
Sbjct: 391 IGRQSQLSELVSKLERPCLHAVSLGFIHPYTGENVQFSCQPPEDFSEILCQLR 443



 Score = 82.8 bits (203), Expect(2) = 7e-51
 Identities = 36/55 (65%), Positives = 48/55 (87%)
 Frame = -2

Query: 576 QDEHSHSHLAEQFKRHTIHRMYISLTSGVPYRGSGRIEIPIARDSSNRIRMAAVP 412
           ++E SH+HL+EQFK HTI R+Y+SLT+GVP   SGRIE+PI RD++NRIRM+A+P
Sbjct: 262 KNERSHAHLSEQFKMHTIRRVYVSLTNGVPSATSGRIEVPIGRDTNNRIRMSAIP 316


>gb|KCW70505.1| hypothetical protein EUGRSUZ_F03712 [Eucalyptus grandis]
          Length = 462

 Score =  241 bits (615), Expect = 1e-60
 Identities = 122/193 (63%), Positives = 147/193 (76%), Gaps = 1/193 (0%)
 Frame = -3

Query: 1427 YTGLRFEASVDSGS-AKARVDSWIASRIQGVSRARIESSIRSGLVAVNGITVHKVSHRIK 1251
            Y G+R   +VD+    K R+D+WI+SRIQGVSRAR++SSIRSGLV+VNG  V KVSH ++
Sbjct: 67   YAGVRLRETVDAAKPGKLRLDAWISSRIQGVSRARVQSSIRSGLVSVNGRVVDKVSHNVR 126

Query: 1250 EGDKVSCVVSELQPLRAEPEDIPLDIVYEDAHVLVVNKPAHMVVHPAPGNANGTLVNAVL 1071
             GD V C +SELQPLRAEPEDIP+DIVYED HVLVVNKPAHMVVHPAPGNA+GTLVNA+L
Sbjct: 127  AGDMVDCTISELQPLRAEPEDIPVDIVYEDEHVLVVNKPAHMVVHPAPGNASGTLVNAIL 186

Query: 1070 NHCKLPMVAHTNNKRSMETEEYIESSDSENEDFLIDQSSVEEFKSENNDALVRPGIVHRL 891
            +HC LP VA +  +   E E+    SD E+      ++S + F S  +   VRPGIVHRL
Sbjct: 187  HHCSLPTVAFSETELLSEGEDV---SDDESSSSTACETSTKGFNSSESGGSVRPGIVHRL 243

Query: 890  DKGTSGLLVIAKN 852
            DKGTSGLLV+AKN
Sbjct: 244  DKGTSGLLVVAKN 256



 Score =  148 bits (373), Expect(2) = 7e-51
 Identities = 68/113 (60%), Positives = 83/113 (73%)
 Frame = -1

Query: 394 YKVVEIFADGGSALVQWRLETGRTHQIRAHAKYLGVPLLGDELYGGTKGMAXXXXXXXXX 215
           YKV+E+ A G SALV+WRLETGRTHQIRAHAKY+G+PLLGDE+YGGTK M          
Sbjct: 324 YKVIEVLAGGSSALVEWRLETGRTHQIRAHAKYVGIPLLGDEVYGGTKNMILSLLQAKLP 383

Query: 214 XXXXXXXXRMISRLQRPCLHALYLGFTHPHTGEYLKFSCPPPDDFSEALSVLR 56
                    ++S+L+RPCLHA+ LGF HP+TGE ++FSC PP+DFSE L  LR
Sbjct: 384 IGRQSQLSELVSKLERPCLHAVSLGFIHPYTGENVQFSCQPPEDFSEILCQLR 436



 Score = 82.8 bits (203), Expect(2) = 7e-51
 Identities = 36/55 (65%), Positives = 48/55 (87%)
 Frame = -2

Query: 576 QDEHSHSHLAEQFKRHTIHRMYISLTSGVPYRGSGRIEIPIARDSSNRIRMAAVP 412
           ++E SH+HL+EQFK HTI R+Y+SLT+GVP   SGRIE+PI RD++NRIRM+A+P
Sbjct: 255 KNERSHAHLSEQFKMHTIRRVYVSLTNGVPSATSGRIEVPIGRDTNNRIRMSAIP 309


>ref|XP_002439034.1| hypothetical protein SORBIDRAFT_10g030300 [Sorghum bicolor]
            gi|241917257|gb|EER90401.1| hypothetical protein
            SORBIDRAFT_10g030300 [Sorghum bicolor]
          Length = 441

 Score =  241 bits (615), Expect = 1e-60
 Identities = 125/200 (62%), Positives = 156/200 (78%), Gaps = 2/200 (1%)
 Frame = -3

Query: 1445 QSVRVNYTGLRFEASVDSGSAKARVDSWIASRIQG--VSRARIESSIRSGLVAVNGITVH 1272
            +S +  + G+R E +V  G  ++R+D+WI++R+ G  VSRAR+++SIR+GLVAVNG  V 
Sbjct: 51   ESRKGGHGGMRLEEAVPVGEGRSRIDAWISARLGGGGVSRARVQASIRAGLVAVNGRPVS 110

Query: 1271 KVSHRIKEGDKVSCVVSELQPLRAEPEDIPLDIVYEDAHVLVVNKPAHMVVHPAPGNANG 1092
            KVSH +K GD VSC VSELQPLRAE EDIPLDIVYED HVLVVNKPAHMVVHPAPGNANG
Sbjct: 111  KVSHTVKGGDLVSCTVSELQPLRAEAEDIPLDIVYEDDHVLVVNKPAHMVVHPAPGNANG 170

Query: 1091 TLVNAVLNHCKLPMVAHTNNKRSMETEEYIESSDSENEDFLIDQSSVEEFKSENNDALVR 912
            TLVNA+L+HCK+     T   RS   +E ++SSD + + F +DQ + E+  SE  +ALVR
Sbjct: 171  TLVNAILHHCKIS--TFTCLARSSTGDECLDSSDDDIDVFNVDQFATEDASSEVRNALVR 228

Query: 911  PGIVHRLDKGTSGLLVIAKN 852
            PGIVHRLDKGTSGLLV+AK+
Sbjct: 229  PGIVHRLDKGTSGLLVVAKD 248



 Score =  157 bits (396), Expect(2) = 4e-52
 Identities = 74/124 (59%), Positives = 85/124 (68%)
 Frame = -1

Query: 394 YKVVEIFADGGSALVQWRLETGRTHQIRAHAKYLGVPLLGDELYGGTKGMAXXXXXXXXX 215
           YKV E+F  GGSALV+WRLETGRTHQIRAHAKY+G+PLLGDE YGGTK MA         
Sbjct: 315 YKVREVFVGGGSALVEWRLETGRTHQIRAHAKYIGIPLLGDETYGGTKSMALSLLRPRTP 374

Query: 214 XXXXXXXXRMISRLQRPCLHALYLGFTHPHTGEYLKFSCPPPDDFSEALSVLRSFPRQSA 35
                    +IS++ RPCLHA  LGF HPH+G+ L+FSCPPPDDFSE L  LR      A
Sbjct: 375 SKYHSDLSNLISKVDRPCLHAALLGFKHPHSGKILEFSCPPPDDFSEVLDELRKVTSSDA 434

Query: 34  VSSD 23
            + D
Sbjct: 435 QNGD 438



 Score = 78.2 bits (191), Expect(2) = 4e-52
 Identities = 38/54 (70%), Positives = 43/54 (79%)
 Frame = -2

Query: 576 QDEHSHSHLAEQFKRHTIHRMYISLTSGVPYRGSGRIEIPIARDSSNRIRMAAV 415
           +DEHSH+ LAEQFK HTI R+YISLT GVP   SGRIE  IARD +NRIRM A+
Sbjct: 247 KDEHSHAQLAEQFKLHTIRRVYISLTCGVPNPNSGRIEASIARDPNNRIRMIAI 300


>ref|XP_004966473.1| PREDICTED: RNA pseudouridine synthase 2, chloroplastic [Setaria
            italica] gi|944247956|gb|KQL12250.1| hypothetical protein
            SETIT_007819mg [Setaria italica]
          Length = 437

 Score =  238 bits (608), Expect = 9e-60
 Identities = 124/193 (64%), Positives = 152/193 (78%), Gaps = 2/193 (1%)
 Frame = -3

Query: 1424 TGLRFEASVDSGSAKARVDSWIASRIQG--VSRARIESSIRSGLVAVNGITVHKVSHRIK 1251
            TG R E +V +G  ++RVD+WI++R+ G  VSRAR+++SIR+GLVAVNG  V KVSH +K
Sbjct: 53   TGTRLEEAVPAGEGRSRVDAWISARLGGGGVSRARVQASIRAGLVAVNGRPVSKVSHMVK 112

Query: 1250 EGDKVSCVVSELQPLRAEPEDIPLDIVYEDAHVLVVNKPAHMVVHPAPGNANGTLVNAVL 1071
             GD VSC VSELQPLRAE EDIPLDIVYED HVLVVNKPAHMVVHPAPGNANGTLVNA+L
Sbjct: 113  GGDLVSCTVSELQPLRAEAEDIPLDIVYEDDHVLVVNKPAHMVVHPAPGNANGTLVNAIL 172

Query: 1070 NHCKLPMVAHTNNKRSMETEEYIESSDSENEDFLIDQSSVEEFKSENNDALVRPGIVHRL 891
            +HC++     T   R+   +E  +SSD + + F +DQ + E+  SE  +ALVRPGIVHRL
Sbjct: 173  HHCRIS--TFTCLARNSTGDECPDSSDDDVDVFDVDQFTTEDVSSEVRNALVRPGIVHRL 230

Query: 890  DKGTSGLLVIAKN 852
            DKGTSGLLV+AK+
Sbjct: 231  DKGTSGLLVVAKD 243



 Score =  155 bits (393), Expect(2) = 3e-52
 Identities = 73/113 (64%), Positives = 83/113 (73%)
 Frame = -1

Query: 394 YKVVEIFADGGSALVQWRLETGRTHQIRAHAKYLGVPLLGDELYGGTKGMAXXXXXXXXX 215
           YKV E+FA GGSALV+WRLETGRTHQIRAHAKYLG+PLLGDE YGGTK MA         
Sbjct: 310 YKVREVFAGGGSALVEWRLETGRTHQIRAHAKYLGIPLLGDETYGGTKSMALSLLRPRTP 369

Query: 214 XXXXXXXXRMISRLQRPCLHALYLGFTHPHTGEYLKFSCPPPDDFSEALSVLR 56
                    +IS++ RPCLHA  LGF HPH+G+ L+FSCPPPDDF+E L  LR
Sbjct: 370 SKYHSGLSDLISKVDRPCLHAALLGFKHPHSGKILEFSCPPPDDFTEVLDELR 422



 Score = 79.7 bits (195), Expect(2) = 3e-52
 Identities = 38/54 (70%), Positives = 44/54 (81%)
 Frame = -2

Query: 576 QDEHSHSHLAEQFKRHTIHRMYISLTSGVPYRGSGRIEIPIARDSSNRIRMAAV 415
           +DEHSH+ LAEQFK HTI R+YISLT GVP+  SGRIE  IARD +NRIRM A+
Sbjct: 242 KDEHSHAQLAEQFKLHTIRRVYISLTCGVPHPNSGRIEASIARDPNNRIRMIAI 295


>ref|XP_011649467.1| PREDICTED: RNA pseudouridine synthase 2, chloroplastic isoform X3
            [Cucumis sativus]
          Length = 334

 Score =  238 bits (607), Expect = 1e-59
 Identities = 134/244 (54%), Positives = 162/244 (66%), Gaps = 3/244 (1%)
 Frame = -3

Query: 1574 TAGSTTSP--FFFLLKLRRRNPEVSKLLCCXXXXXXXXXXXXXXPQSVRV-NYTGLRFEA 1404
            T  ++ SP  FFF    RR    V ++                  QS R+ NY G R E 
Sbjct: 9    TIQASPSPIHFFFPPNRRRIGSNVLRISSNFSTRCSSDYDEYSEAQSERIANYAGTRLEE 68

Query: 1403 SVDSGSAKARVDSWIASRIQGVSRARIESSIRSGLVAVNGITVHKVSHRIKEGDKVSCVV 1224
            +VD    K R+DSWI+ RI G+SRAR++SSIR+GLV+VNG  + KVSH +K GD ++C +
Sbjct: 69   TVDVNPGKVRLDSWISCRINGISRARVQSSIRAGLVSVNGRVIDKVSHNVKAGDVINCTI 128

Query: 1223 SELQPLRAEPEDIPLDIVYEDAHVLVVNKPAHMVVHPAPGNANGTLVNAVLNHCKLPMVA 1044
            SELQPLRAEPEDI LDIVYED HVLVVNKPAHMVVHPAPGNA GTLVNA+LNHC LPMVA
Sbjct: 129  SELQPLRAEPEDIDLDIVYEDEHVLVVNKPAHMVVHPAPGNATGTLVNAILNHCSLPMVA 188

Query: 1043 HTNNKRSMETEEYIESSDSENEDFLIDQSSVEEFKSENNDALVRPGIVHRLDKGTSGLLV 864
                     T E    SD  +++F    SS+  F S  ++A +RPGIVHRLDKGTSGLLV
Sbjct: 189  -------TSTGENESDSDVSDDEF----SSIGVF-SRVSEAPIRPGIVHRLDKGTSGLLV 236

Query: 863  IAKN 852
            +AK+
Sbjct: 237  VAKD 240



 Score = 80.9 bits (198), Expect(2) = 3e-20
 Identities = 37/60 (61%), Positives = 48/60 (80%)
 Frame = -2

Query: 576 QDEHSHSHLAEQFKRHTIHRMYISLTSGVPYRGSGRIEIPIARDSSNRIRMAAVPVLKNS 397
           +DEHSH+HL+ QFK+H+I R+YISLT GVP   +GRIE+PI RD +NRIRM A+   KN+
Sbjct: 239 KDEHSHAHLSAQFKQHSIERVYISLTCGVPPSTAGRIEMPICRDPNNRIRMTAIDGTKNN 298



 Score = 47.4 bits (111), Expect(2) = 3e-20
 Identities = 20/26 (76%), Positives = 23/26 (88%)
 Frame = -1

Query: 394 YKVVEIFADGGSALVQWRLETGRTHQ 317
           Y V+EI A GGS+LV+WRLETGRTHQ
Sbjct: 308 YNVMEILAQGGSSLVEWRLETGRTHQ 333