BLASTX nr result
ID: Ophiopogon21_contig00009426
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Ophiopogon21_contig00009426
(1579 letters)
Database: ./nr
77,306,371 sequences; 28,104,191,420 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|KHN27337.1| DNA-directed RNA polymerase E subunit 1 [Glycine ... 172 7e-40
ref|XP_006598109.1| PREDICTED: DNA-directed RNA polymerase V sub... 170 3e-39
gb|KRH13386.1| hypothetical protein GLYMA_15G235900 [Glycine max... 168 1e-38
ref|XP_003627838.2| DNA-directed RNA polymerase [Medicago trunca... 167 2e-38
ref|XP_006646896.1| PREDICTED: DNA-directed RNA polymerase V sub... 166 7e-38
gb|EEE56320.1| hypothetical protein OsJ_05410 [Oryza sativa Japo... 163 5e-37
ref|XP_008812396.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed... 162 6e-37
ref|XP_010932322.1| PREDICTED: DNA-directed RNA polymerase V sub... 162 8e-37
ref|XP_003541591.1| PREDICTED: DNA-directed RNA polymerase V sub... 159 5e-36
gb|KQL28710.1| hypothetical protein SETIT_016066mg [Setaria ital... 159 9e-36
ref|XP_004951807.1| PREDICTED: DNA-directed RNA polymerase V sub... 159 9e-36
gb|AAX12374.1| DNA-directed RNA polymerase alpha subunit [Spinac... 156 4e-35
gb|KRH20723.1| hypothetical protein GLYMA_13G196900 [Glycine max] 156 6e-35
gb|AIO05699.1| DNA-directed RNA polymerase V subunit 1, partial ... 156 6e-35
ref|XP_002879839.1| NRPD1b [Arabidopsis lyrata subsp. lyrata] gi... 156 6e-35
gb|KMT17107.1| hypothetical protein BVRB_2g041610 [Beta vulgaris... 154 3e-34
ref|XP_010670484.1| PREDICTED: DNA-directed RNA polymerase V sub... 154 3e-34
ref|XP_009133402.1| PREDICTED: DNA-directed RNA polymerase V sub... 154 3e-34
ref|XP_013734544.1| PREDICTED: DNA-directed RNA polymerase V sub... 153 4e-34
gb|KHN37673.1| DNA-directed RNA polymerase E subunit 1 [Glycine ... 153 5e-34
>gb|KHN27337.1| DNA-directed RNA polymerase E subunit 1 [Glycine soja]
Length = 2094
Score = 172 bits (436), Expect = 7e-40
Identities = 153/579 (26%), Positives = 247/579 (42%), Gaps = 54/579 (9%)
Frame = -1
Query: 1579 WGS---KEKICAENGNK-SSWEKVSPTAVESESWQAWGSKAK-PSADNGNKSRWERASPA 1415
WGS K + E+ ++ +W+ + +S W WG K DN W+ +
Sbjct: 1448 WGSSKWKADVAQEDNSRLGAWDANAADQTKSSDWSGWGKKKDITQEDNSRLGAWDANAAD 1507
Query: 1414 VVELN--SQWGCKQK-PYADNGNKSSWEKVSPMVAESDNWQGRGNRDQLARDSSEMPTTR 1244
+ + S WG K+ DN +W+ + +S W G G + +D + +R
Sbjct: 1508 QTKSSDWSGWGKKKDITQEDNSRLGAWDANAADQTKSSEWSGWGKK----KDVTHEDNSR 1563
Query: 1243 ADVWSSWDVAKVQRSNQSTQSRKESDGFSSFDNDEVQKCPIWKTNKPEAVSFSGYEPVKS 1064
W + + + S S +K+ + DN + ++ ++ +SG+ K
Sbjct: 1564 LGAWDANAADQTKSSEWSGWGKKKD--VTHEDNSRLGAWDANAADQTKSSEWSGWGKKKD 1621
Query: 1063 VNKPDSG----WKERVGNE------SSWTPKKPQVESSTGWADNSENKAWSAKSPDSGWK 914
V + D+ W ++ S W KK + DNS AW A + D K
Sbjct: 1622 VTQEDNSRLGAWDANAADQTKSNEWSGWGKKKDVTQE-----DNSRFGAWDANAEDQT-K 1675
Query: 913 ENIGNNSSWTARKPEVQNSSG----WQENSEKKIWSANLPDCGIK----ESQGNKSSWTA 758
N S W +K Q + W N+E + S D G K + + SW +
Sbjct: 1676 SN--EWSGWGKKKDVTQEDNSRFGAWDANAEDQTKSNEWSDWGKKKEVTQEDNVQDSWGS 1733
Query: 757 RKPEAESSSRWQESSENKAWSARSPDSGWKRSGENKSSWSSKKPGENTSGQSENVVKDAW 578
K + + + +++S + W A D +S E SSW K E +G SENV D+W
Sbjct: 1734 GKRKDKVTQ--EDNSGSGGWGANRTDLAKSKSSE-WSSWGKNK-SEIPAGGSENVQNDSW 1789
Query: 577 SAKSLE-------SGWNQKAENQENLTWTAKKPEVDSLPGGN----------------ES 467
+ LE SG E + ++KP+ D+ GN S
Sbjct: 1790 GSGKLEDDTQKENSGSAWVRNKAETIDGGSEKPQEDAWNSGNWKAESKVGNASWGKPKSS 1849
Query: 466 EGQAWET--RTTEAKSSPGWNESGGNPWVTKTPEVGAPTGWGVKGKQGWKSQVW-GSSSF 296
E QAW++ ++ + SS GW + E G WG +G+ +K + GS
Sbjct: 1850 ESQAWDSHNQSNQNSSSQGWESHIAS--ANSESEKGFQ--WGKQGRDSFKKNRFEGSQGR 1905
Query: 295 NDRKGPKNNSPRPPASGRPEDRGGWRRAEAFSTEEEKILVDIEPIMNSIRKILRES--SD 122
G N RPP R +R + +S+ E+ +L DIEPIM SIR+I+++ +D
Sbjct: 1906 GSNAGDWKNRNRPP-------RAPGQRLDIYSSGEQDVLKDIEPIMQSIRRIMQQQGYND 1958
Query: 121 GNRVSPEDQKFITENVFEFHPDKQSKVADQMDYIMVDKH 5
G+ ++ EDQ F+ ENVFE HPDK++K+ +DY+MV+KH
Sbjct: 1959 GDPLAAEDQLFVLENVFEHHPDKETKMGTGIDYVMVNKH 1997
>ref|XP_006598109.1| PREDICTED: DNA-directed RNA polymerase V subunit 1-like [Glycine max]
Length = 2082
Score = 170 bits (431), Expect = 3e-39
Identities = 149/547 (27%), Positives = 243/547 (44%), Gaps = 22/547 (4%)
Frame = -1
Query: 1579 WGSKEKICAENGNK-SSWEKVSPTAVESESWQAWGSKAK-PSADNGNKSRWERASPAVVE 1406
WG K+ + E+ ++ +W+ + +S W WG K DN W+ A+ A
Sbjct: 1505 WGKKKDVTQEDNSRLGAWDANAADQTKSRDWSGWGKKKDITQEDNSRLGAWD-ANAADQT 1563
Query: 1405 LNSQWGC----KQKPYADNGNKSSWEKVSPMVAESDNWQGRGNRDQLAR---------DS 1265
+S+W K DN +W+ + +S+ W G G + ++ + D+
Sbjct: 1564 KSSEWSGWGKKKDVTQEDNSRLGAWDANTADQTKSNEWSGWGKKKEVTQEDNSRLGAWDA 1623
Query: 1264 SEMPTTRADVWSSWDVAKVQRSNQSTQSRKESDGFSSFD-NDEVQKCPIWKTNKPEAVSF 1088
+ T+++ WS W K + Q SR F ++D N E Q K+N+ +
Sbjct: 1624 NTADQTKSNEWSGW--GKKKEVTQEDNSR-----FGAWDANAEDQT----KSNE-----W 1667
Query: 1087 SGYEPVKSVNKPDSGWKERVGNESSWTPKKPQVESSTGWADNSENKAWSAKSPDSGWKEN 908
SG+ K V + D+ R+G +W S W+D W K + ++N
Sbjct: 1668 SGWGKKKDVTQEDNS---RLG---AWDANAADQTKSNEWSD------WGKKK-EVTQEDN 1714
Query: 907 IGNNSSWTARKPEVQNSSGWQENSEKKIWSANLPDCGIKESQGNKSSWTARKPEAESSSR 728
+ ++ RK +V ++NS W AN D K SSW K E +
Sbjct: 1715 VQDSWGSGKRKDKVTQ----EDNSGSGGWGANRTDLA-KSKSSEWSSWGKNKSEIPAGG- 1768
Query: 727 WQESSENKAWSARSPDSGWKRSGENKSSWSSKKPGENTSGQSENVVKDAWSAKSLESGWN 548
E+ +N +W + + ++ EN S + E G SE +DAW++ N
Sbjct: 1769 -SENVQNDSWGSGKLEDDTQK--ENSGSAWVRNKAETIDGGSEKPQEDAWNSG------N 1819
Query: 547 QKAENQE-NLTWTAKKPEVDSLPGGNESEGQAWET--RTTEAKSSPGWNESGGNPWVTKT 377
KAE++ N +W K SE QAW++ ++ + SS GW +
Sbjct: 1820 WKAESKVGNASWGKPK----------SSESQAWDSHNQSNQNSSSQGWESHIAS--ANSE 1867
Query: 376 PEVGAPTGWGVKGKQGWKSQVW-GSSSFNDRKGPKNNSPRPPASGRPEDRGGWRRAEAFS 200
E G WG +G+ +K + GS G N RPP R +R + +S
Sbjct: 1868 SEKGFQ--WGKQGRDSFKKNRFEGSQGRGSNAGDWKNRNRPP-------RAPGQRLDIYS 1918
Query: 199 TEEEKILVDIEPIMNSIRKILRES--SDGNRVSPEDQKFITENVFEFHPDKQSKVADQMD 26
+ E+ +L DIEPIM SIR+I+++ +DG+ ++ EDQ F+ ENVFE HPDK++K+ +D
Sbjct: 1919 SGEQDVLKDIEPIMQSIRRIMQQQGYNDGDPLAAEDQLFVLENVFEHHPDKETKMGTGID 1978
Query: 25 YIMVDKH 5
Y+MV+KH
Sbjct: 1979 YVMVNKH 1985
>gb|KRH13386.1| hypothetical protein GLYMA_15G235900 [Glycine max]
gi|947064126|gb|KRH13387.1| hypothetical protein
GLYMA_15G235900 [Glycine max] gi|947064127|gb|KRH13388.1|
hypothetical protein GLYMA_15G235900 [Glycine max]
Length = 2082
Score = 168 bits (426), Expect = 1e-38
Identities = 141/537 (26%), Positives = 241/537 (44%), Gaps = 12/537 (2%)
Frame = -1
Query: 1579 WGSKEKICAENGNK-SSWEKVSPTAVESESWQAWGSKAK-PSADNGNKSRWERASPAVVE 1406
WG K+ + E+ ++ +W+ + +S W WG K DN W+ A+ A
Sbjct: 1505 WGKKKDVTQEDNSRLGAWDANAADQTKSRDWSGWGKKKDITQEDNSRLGAWD-ANAADQT 1563
Query: 1405 LNSQWGC----KQKPYADNGNKSSWEKVSPMVAESDNWQGRGNRDQLARDSSEMPTTRAD 1238
+S+W K DN +W+ + +S+ W G G + ++ ++ + +R
Sbjct: 1564 KSSEWSGWGKKKDVTQEDNSRLGAWDANTADQTKSNEWSGWGKKKEVTQEDN----SRLG 1619
Query: 1237 VWSSWDVAKVQRSNQSTQSRKESDGFSSFDNDEVQKCPIWKTNKPEAVSFSGYEPVKSVN 1058
W + + A +SN+ + K+ + + DN + ++ ++ +SG+ K V
Sbjct: 1620 AWDA-NTADQTKSNEWSGWGKKKE-VTQEDNSRLGAWDANAADQTKSNEWSGWGKKKDVT 1677
Query: 1057 KPDSGWKERVGNESSWTPKKPQVESSTGWADNSENKAWSAKSPDSGWKENIGNNSSWTAR 878
+ D+ R+G +W S W+D W K + ++N+ ++ R
Sbjct: 1678 QEDNS---RLG---AWDANAADQTKSNEWSD------WGKKK-EVTQEDNVQDSWGSGKR 1724
Query: 877 KPEVQNSSGWQENSEKKIWSANLPDCGIKESQGNKSSWTARKPEAESSSRWQESSENKAW 698
K +V ++NS W AN D K SSW K E + E+ +N +W
Sbjct: 1725 KDKVTQ----EDNSGSGGWGANRTDLA-KSKSSEWSSWGKNKSEIPAGG--SENVQNDSW 1777
Query: 697 SARSPDSGWKRSGENKSSWSSKKPGENTSGQSENVVKDAWSAKSLESGWNQKAENQE-NL 521
+ + ++ EN S + E G SE +DAW++ N KAE++ N
Sbjct: 1778 GSGKLEDDTQK--ENSGSAWVRNKAETIDGGSEKPQEDAWNSG------NWKAESKVGNA 1829
Query: 520 TWTAKKPEVDSLPGGNESEGQAWET--RTTEAKSSPGWNESGGNPWVTKTPEVGAPTGWG 347
+W K SE QAW++ ++ + SS GW + E G WG
Sbjct: 1830 SWGKPK----------SSESQAWDSHNQSNQNSSSQGWESHIAS--ANSESEKGFQ--WG 1875
Query: 346 VKGKQGWKSQVW-GSSSFNDRKGPKNNSPRPPASGRPEDRGGWRRAEAFSTEEEKILVDI 170
+G+ +K + GS G N RPP R +R + +S+ E+ +L DI
Sbjct: 1876 KQGRDSFKKNRFEGSQGRGSNAGDWKNRNRPP-------RAPGQRLDIYSSGEQDVLKDI 1928
Query: 169 EPIMNSIRKILRES--SDGNRVSPEDQKFITENVFEFHPDKQSKVADQMDYIMVDKH 5
EPIM SIR+I+++ +DG+ ++ EDQ F+ ENVFE HPDK++K+ +DY+MV+KH
Sbjct: 1929 EPIMQSIRRIMQQQGYNDGDPLAAEDQLFVLENVFEHHPDKETKMGTGIDYVMVNKH 1985
>ref|XP_003627838.2| DNA-directed RNA polymerase [Medicago truncatula]
gi|657373396|gb|AET02314.2| DNA-directed RNA polymerase
[Medicago truncatula]
Length = 2010
Score = 167 bits (423), Expect = 2e-38
Identities = 162/596 (27%), Positives = 248/596 (41%), Gaps = 81/596 (13%)
Frame = -1
Query: 1549 NGNKSSWEKVSPTAVESESWQAWGSKAKP------SADNGNKSRWERASPAVVELN-SQW 1391
NG S+ +++ S W WG D+ S W A+ + + S W
Sbjct: 1324 NGWDSNKDQIDQPNTNSNDWSGWGPNKSDLQVDVIQEDSSKSSAWGAATNQKSDQSASAW 1383
Query: 1390 GCKQKPYADNGNKSSWEKVSPMVAESDNWQGRGNR--DQLARDSSEMPTTRADVWSSWDV 1217
G K D+ +W + ++ +W N+ DQ A S+W
Sbjct: 1384 G-KAVVQEDSSKSGAWGTATNQNSQQPSWGAATNQKSDQSA--------------SAWGK 1428
Query: 1216 AKVQRSNQSTQSRKESDGFSSFDNDEVQKCPIWKTNKPEAVSF-----SGYEPVKSVNKP 1052
A VQ S++S + S D + TN S G E + +
Sbjct: 1429 AVVQED--SSKSGAWGNAKSVVQEDSSKSGAPANTNHSSDQSCWGQITGGEERAQGESGG 1486
Query: 1051 DSGWKERVGNESS--------WTPKKPQVES--STGWADNSENKAWSAKSPDSGWKENIG 902
WK V E S W KP+V ST D+ ++ W K+ + +++
Sbjct: 1487 TKKWKADVSQEDSTNSGGWKAWGSSKPEVHEGESTKVQDSWNSQKW--KAGEDVTQKDSQ 1544
Query: 901 NNSSWTARK-------PEVQNSSGWQENSEKKIWSANLPDCGIKESQGNKSSWTARKPEA 743
+S+W A K + NS GW K W ++ P+ ES + SW ++K +A
Sbjct: 1545 KSSAWGATKLKSNDIQEDSTNSGGW------KAWGSSKPEVHEGESTKVQDSWNSQKWKA 1598
Query: 742 ESSSRWQESSENKAWSARSPDSGWKRSGENKSSWSSKKPG----------ENTSGQSENV 593
++S ++ AW A P +S +N+SSW KK N Q
Sbjct: 1599 AEDVSQKDSQKSSAWGATKP-----KSNDNRSSWGQKKDEIHVMPEDSSRSNAWEQKPEN 1653
Query: 592 VKDAWSAKS--LESGWNQKAENQENLTWTAKKPEVDSLPGGNESEGQAWETRTTEAKSSP 419
VKD+W AK S W KA++ EN W +K +S N E + W+++ E+ SS
Sbjct: 1654 VKDSWVAKVPVANSSWG-KAKSPENRPWDSKNEPNNSFGKPNSQENEPWDSKN-ESDSSW 1711
Query: 418 GWNESG-GNPWVTKT--------PEVGAPTGWGVK-------GKQGWKSQVWGSSSFND- 290
G +S PW +K P+ W K G +GW SQV ++S +D
Sbjct: 1712 GKPKSQESQPWDSKNESNSSWGKPKSQENHPWDSKNESNQTAGSRGWDSQVASANSESDK 1771
Query: 289 --------RKGPKNNSPRPPASGRPEDRGGWR-----------RAEAFSTEEEKILVDIE 167
R K N SG P + G W+ R E ++ EE+ I+ DIE
Sbjct: 1772 SFQWGKQGRDSFKKNRFEGSQSGGP-NAGDWKNRSRPVRPPGQRFELYTPEEQDIMKDIE 1830
Query: 166 PIMNSIRKI--LRESSDGNRVSPEDQKFITENVFEFHPDKQSKVADQMDYIMVDKH 5
PI+ SIR+I L+ +DG+ ++ EDQK++ ENVFE HPDK++K+ +D++MV KH
Sbjct: 1831 PIVQSIRRIMQLQGYNDGDPLANEDQKYVLENVFEHHPDKETKMGVGVDHVMVSKH 1886
Score = 60.5 bits (145), Expect = 4e-06
Identities = 67/264 (25%), Positives = 99/264 (37%), Gaps = 20/264 (7%)
Frame = -1
Query: 1579 WGSKEKICAENGNKSS-W-------EKVSPTAVESESWQAWGSKAKPSA---------DN 1451
W + E + ++ KSS W + + S W+AWGS +KP D+
Sbjct: 1532 WKAGEDVTQKDSQKSSAWGATKLKSNDIQEDSTNSGGWKAWGS-SKPEVHEGESTKVQDS 1590
Query: 1450 GNKSRWERA---SPAVVELNSQWGCKQKPYADNGNKSSWEKVSPMVAESDNWQGRGNRDQ 1280
N +W+ A S + +S WG KP N N+SSW + + R N +
Sbjct: 1591 WNSQKWKAAEDVSQKDSQKSSAWGA-TKP-KSNDNRSSWGQKKDEIHVMPEDSSRSNAWE 1648
Query: 1279 LARDSSEMPTTRADVWSSWDVAKVQRSNQSTQSRKESDGFSSFDNDEVQKCPIWKTNKPE 1100
+ P D W VAKV +N S K + +D+ K N E
Sbjct: 1649 ------QKPENVKDSW----VAKVPVANSSWGKAKSPEN-RPWDSKNEPNNSFGKPNSQE 1697
Query: 1099 AVSFSGYEPVKSVNKPDSGWKERVGNESSWTPKKPQVESSTGWADNSENKAWSAKSPDSG 920
EP S N+ DS W + ES K + SS G + EN W +K+ +
Sbjct: 1698 ------NEPWDSKNESDSSWGKPKSQESQPWDSKNESNSSWGKPKSQENHPWDSKNESNQ 1751
Query: 919 WKENIGNNSSWTARKPEVQNSSGW 848
+ G +S + E S W
Sbjct: 1752 TAGSRGWDSQVASANSESDKSFQW 1775
>ref|XP_006646896.1| PREDICTED: DNA-directed RNA polymerase V subunit 1-like [Oryza
brachyantha]
Length = 1993
Score = 166 bits (419), Expect = 7e-38
Identities = 164/574 (28%), Positives = 256/574 (44%), Gaps = 58/574 (10%)
Frame = -1
Query: 1552 ENGNKS--SWEKVSPTAVESESWQAWGSKAKPSADNG-------NKSRWERASPAVVELN 1400
ENG + SWE+ +S+ W W + A AD KS W+ PA VE +
Sbjct: 1320 ENGTAANGSWEQNGSAGDDSDKWGGWNAAAV-GADTAVTKQADQEKSCWD--VPAAVEKS 1376
Query: 1399 SQ----WGCKQKPYADNGNKSSWEKVSPMVAESDNWQGRGNRDQLARDSSEMPTTRADV- 1235
S WG +++ +N + AE D W + + D + + P+ +
Sbjct: 1377 SSDWGGWGTEKRKVKEN--------LPEEPAEHDAWLAKRSMDGGDINWGKQPSISDEFK 1428
Query: 1234 ----WSSWDVAKVQRSNQSTQSRKESDGFSSFDN---------DEVQKCP-IWKTNKPEA 1097
SW + N++ +K G ++++ D +K P WK NK
Sbjct: 1429 KNVDQGSWGNMSLSAENRAWDKKKPDGGDATWNKQSSTQNDGGDTWEKQPSAWKENKGRG 1488
Query: 1096 VSFSGYEPVKSVNKPDSGWKERVGNESSWTPKKPQVESSTGWADNSENKAWSA------K 935
+ +E KS ++ S + N ++ K+ S T ++++NK+W
Sbjct: 1489 SNGGSWE--KSNSQKGSWGNDEAHNNANM--KQDTWGSVTAHNNDTQNKSWGTVDAKANT 1544
Query: 934 SPDSGWKENIGNNS--SWTARKPEV--QNSSGWQENSEKKIWSANLPDCGIKESQ--GN- 776
S + W I + S +W A +NS Q S + SA D K+ + GN
Sbjct: 1545 STEKSWGNVIASPSDNAWNAAPVSQGNENSDAKQPGSWEGWNSARADDSSTKDKEPWGNV 1604
Query: 775 KSSWTARKPEAESSSRWQESSENK---AWSARSPDSGWKRSGENKSSWSSKKPGENTSGQ 605
+S + A S+ ESS+ K +W GW + + S+ K+P +N
Sbjct: 1605 AASPSFNAWNAAPVSQGDESSDAKQSGSWE------GWNSARADNSTTKDKEPWDNVVAS 1658
Query: 604 SENVVKDAWSAKSLESGWNQKAENQENLTWTA--KKPEVDSLPGGNESEGQAWETRTTEA 431
S + +AW+A + G N+ ++ +++ +W D NES G + + A
Sbjct: 1659 SSD---NAWNAAPVCHG-NESSDAKQSGSWEGWNSSRAEDLSRKDNESWGNVASSPSDSA 1714
Query: 430 KSSPGWNESGGNPWVTKTPEVGAPTGWGVK-----GKQGWKSQVWGSSSFNDRKGPKNNS 266
++ ++ N + T + G+ GW + WKS WG+ N R G ++N
Sbjct: 1715 WNAAPVSQENKN---SDTKQPGSWDGWNSSQADEPSNKDWKSDGWGARGGNWR-GQRSNP 1770
Query: 265 PRPPASG-------RPEDRGGWRRAEAFSTEEEKILVDIEPIMNSIRKILRESSDGNRVS 107
RPP RP+DRG RR + EEEKIL +IEPI+ SIRKI RES DG R+S
Sbjct: 1771 GRPPRKSDGRGPPRRPDDRGPPRRHFDLTPEEEKILGEIEPIVLSIRKIFRESIDGIRLS 1830
Query: 106 PEDQKFITENVFEFHPDKQSKVADQMDYIMVDKH 5
ED+KFI ENV E HP+KQSKV+ ++D+IMVDKH
Sbjct: 1831 LEDEKFIKENVLEHHPEKQSKVSGEIDHIMVDKH 1864
>gb|EEE56320.1| hypothetical protein OsJ_05410 [Oryza sativa Japonica Group]
Length = 2017
Score = 163 bits (412), Expect = 5e-37
Identities = 158/551 (28%), Positives = 233/551 (42%), Gaps = 82/551 (14%)
Frame = -1
Query: 1411 VELNSQWGCKQKPYADNGN--KSSWEKVSPMVAESDNWQGRGNRDQLARDSSEMPTTRAD 1238
V+ NS W DNG +SWE+ +SD W G + A P + +
Sbjct: 1367 VQNNSSW--------DNGTTTNASWEQNGSAGNDSDKWGGWNDAAAGADTGVTKPANQGN 1418
Query: 1237 VWSSWDV-AKVQRSNQS-----TQSRKESDGFSSFDNDEVQKCPIWKTNKPEAVSFSG-- 1082
S WDV A V++S+ T+ KE + S +E + W P+ + G
Sbjct: 1419 --SCWDVPATVEKSSSDWGGWGTEKAKEKEKIS----EEPAQHDAWSVQGPKRATDGGAS 1472
Query: 1081 YEPVKSVNKPDSGWKERVG---NESSWTPKKPQVESSTGWADNSEN------KAWSAKSP 929
++ S + WKE G N SW Q S D +EN K+W +
Sbjct: 1473 WKKQSSTQNDGNSWKENKGRGSNGGSWEKDNAQKGSWGRGNDEAENNNDVQNKSWETVAA 1532
Query: 928 DS--GWKENIGN------NSSWTARKPEVQNSSGWQENSEKKIWSANLPDCGIKESQGNK 773
D+ +++ GN +++W+A V +G + + W G+ ++
Sbjct: 1533 DAHASTEKSWGNVTASPSDNAWSAAP--VSQGNGSSDTKQSDSWDG-WKSAGVDKAINKD 1589
Query: 772 SSWTARKPEAESSSRWQES---SENKAWSARSPDS--GWKRSGENKSSWSSKKPGENTSG 608
P + S S W S N+ A+ DS GWK +G +K+ K E+
Sbjct: 1590 KESLGNVPASPSFSAWNASPVSQGNERSDAKQSDSWDGWKSAGVDKAI---NKDKESLGN 1646
Query: 607 QSENVVKDAWSAKSLESGWNQKAENQENLTWTA-KKPEVDSLPGGNESEGQ--------A 455
+ AW+A + G N++ + +++ +W K VD ES G A
Sbjct: 1647 VPASPSFSAWNAAPVSQG-NERLDAKQSDSWDGWKSAGVDDSVKDKESWGNVPASPSDSA 1705
Query: 454 WET-------RTTEAKSSPGWN---------------ESGGNPWVTKTPEV--GAPTGWG 347
W +++AK S W+ ES GN + + AP G
Sbjct: 1706 WNAAPVSQGNESSDAKQSDSWDGWKSAGVDASTNKDKESWGNVPASPSDSAWNAAPVSQG 1765
Query: 346 ----------VKGKQGWKSQVWGSSSFNDRKGPKNNSPRPPASG-------RPEDRGGWR 218
+ WKS WG+ N R G +NN RPP RP++RG R
Sbjct: 1766 DDVWNSAEANESRNKDWKSDGWGARGGNWR-GQRNNPGRPPRKPDGRGLPRRPDERGPPR 1824
Query: 217 RAEAFSTEEEKILVDIEPIMNSIRKILRESSDGNRVSPEDQKFITENVFEFHPDKQSKVA 38
R + EEEKIL +IEP + SIRKI RES D ++SPED+KFI ENV E HP+KQSKV+
Sbjct: 1825 RHFDLTAEEEKILGEIEPTVLSIRKIFRESIDSIKLSPEDEKFIKENVLEHHPEKQSKVS 1884
Query: 37 DQMDYIMVDKH 5
++D+IMVDKH
Sbjct: 1885 GEIDHIMVDKH 1895
>ref|XP_008812396.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase V subunit
1-like [Phoenix dactylifera]
Length = 1656
Score = 162 bits (411), Expect = 6e-37
Identities = 132/409 (32%), Positives = 184/409 (44%), Gaps = 27/409 (6%)
Frame = -1
Query: 1150 DNDEVQKCPIWKTNKPEAVSFSGYEPVKSVNKPDSGWKERVGNESSWTPKKPQVESSTGW 971
+NDEV P + + G+E ++ K S +VGN SSW V S W
Sbjct: 1246 ENDEVCLSP--EIGFEKLTFDDGFEVDYNLKKDISMENGKVGN-SSWEKLSDSVVGSDRW 1302
Query: 970 ADNSENKAWSAKSPDSGWKENIGNNSSWTARKPEVQNSSGWQENSEKKIWSANLPDCGIK 791
GW+ GN +PE+ SSGWQ K + D
Sbjct: 1303 ---------------QGWEN--GN-------QPEMDTSSGWQGWDNGKQPFIDRSDRS-- 1336
Query: 790 ESQGNK---SSWTARKPEAESS--SRWQESSENKAWSARSPDSGWKRSGENKSS--WSSK 632
+ GN+ ++ P A S S W S + A SP S + + S WSS+
Sbjct: 1337 QGWGNERVTDRENSKLPTARPSVWSSWDASDVQERSQASSPKSQPRHVASSSKSRIWSSQ 1396
Query: 631 KPGENTSGQSENVVKDAWSAKSLESGWNQKAENQENLTW----TAKKPEVDS------LP 482
+ G S D S + + GWN E+ W T K E D+
Sbjct: 1397 SSSKVADGSSV----DTTSKGNAQDGWNHVTESPAKPVWDTNITRKSHEADNTWNTSAFS 1452
Query: 481 GGNESEGQAWETRTTEAKSSPGWNESGGNPWVTKTPEVGAPTGWGVKGKQGWKSQVWGSS 302
N +GQ+++ E WNE+ + Q WKS W SS
Sbjct: 1453 KSNVWDGQSFDKVHNEGSDGGRWNENQATD----------------RKNQSWKSHGWNSS 1496
Query: 301 SFNDRKGPKNNSPRPPASGRPEDRGGW----------RRAEAFSTEEEKILVDIEPIMNS 152
+ DR+ +N S + + G P++R GW RR ++F+ EEE+ILV+IEP M +
Sbjct: 1497 NATDRRTQRNYSNK--SLGMPDNRKGWNPNSLLTSTGRRLDSFTVEEERILVEIEPTMQT 1554
Query: 151 IRKILRESSDGNRVSPEDQKFITENVFEFHPDKQSKVADQMDYIMVDKH 5
IR+ILRESSDG+++S +DQKFI E VF+ HPDKQ+KVADQ+D+IMVDKH
Sbjct: 1555 IRRILRESSDGDQLSADDQKFILERVFQHHPDKQAKVADQIDHIMVDKH 1603
Score = 89.7 bits (221), Expect = 6e-15
Identities = 75/298 (25%), Positives = 120/298 (40%), Gaps = 3/298 (1%)
Frame = -1
Query: 1570 KEKICAENGN--KSSWEKVSPTAVESESWQAWGSKAKPSADNGNKSRWERASPAVVELNS 1397
K+ I ENG SSWEK+S + V S+ WQ W + +P D S W+
Sbjct: 1274 KKDISMENGKVGNSSWEKLSDSVVGSDRWQGWENGNQPEMD--TSSGWQ----------- 1320
Query: 1396 QWGCKQKPYADNGNKSSWEKVSPMVAESDNWQGRGNRDQLARDSSEMPTTRADVWSSWDV 1217
W DNG + P + SD QG GN R++S++PT R VWSSWD
Sbjct: 1321 GW--------DNGKQ-------PFIDRSDRSQGWGNERVTDRENSKLPTARPSVWSSWDA 1365
Query: 1216 AKVQRSNQSTQSRKESDGFSSFDNDEVQKCPIWKTNKPEAVSFSGYEPVKSVNKPDSGWK 1037
+ VQ +Q++ + + +S K IW + V+ S GW
Sbjct: 1366 SDVQERSQASSPKSQPRHVAS-----SSKSRIWSSQSSSKVADGSSVDTTSKGNAQDGW- 1419
Query: 1036 ERVGNESSWTPKKPQVESSTGWADNSENKAWSAKSPDSGWKENIGNNSSWTARKPEVQNS 857
N + +P KP +++ + + W+ + K N+ + S+ E +
Sbjct: 1420 ----NHVTESPAKPVWDTNITRKSHEADNTWNTSAFS---KSNVWDGQSFDKVHNEGSDG 1472
Query: 856 SGWQENSEKKIWSANLPDCGIKESQGNKSSWTARKPEAESSSRWQESSEN-KAWSARS 686
W EN + + + K N S+ T R+ + S++ +N K W+ S
Sbjct: 1473 GRWNENQ-----ATDRKNQSWKSHGWNSSNATDRRTQRNYSNKSLGMPDNRKGWNPNS 1525
>ref|XP_010932322.1| PREDICTED: DNA-directed RNA polymerase V subunit 1 [Elaeis
guineensis] gi|743822629|ref|XP_010932323.1| PREDICTED:
DNA-directed RNA polymerase V subunit 1 [Elaeis
guineensis] gi|743822631|ref|XP_010932324.1| PREDICTED:
DNA-directed RNA polymerase V subunit 1 [Elaeis
guineensis]
Length = 1708
Score = 162 bits (410), Expect = 8e-37
Identities = 131/425 (30%), Positives = 193/425 (45%), Gaps = 30/425 (7%)
Frame = -1
Query: 1189 TQSRKESDGFSSFDNDEVQK------CPIWKTNKPEAVSFSGYEPVKSVNKPDSGWKERV 1028
T S++E+ S D D+++ C + E G++ + K S +V
Sbjct: 1267 TSSQREAGDGCSLDVDDLEVNENNEVCLSPEIGFEELTFDDGFDIDYNCKKDVSMENGKV 1326
Query: 1027 GNESSWTPKKPQVESSTGWADNSENKAWSAKSPDSGWKENIGNNSSWTARKPEVQNSSGW 848
GN SSW V S W GW+ +PE+ SSGW
Sbjct: 1327 GN-SSWEKISDSVAGSDRW---------------QGWENR---------NQPEMDMSSGW 1361
Query: 847 Q--ENSEKKIWSANLPDCGIKESQGNKS---SWTARKPEAESS--SRWQESSENKAWSAR 689
Q +N ++ + + GNK ++ P +S S W S + A
Sbjct: 1362 QGWDNGKQPFTDQS----NTSQGWGNKKVTDGENSKPPTTRTSVWSSWDASDVQERSPAS 1417
Query: 688 SPDS--GWKRSGENKSSWSSKKPGENTSGQSENVVKDAWSAKSLESGWNQKAENQENLTW 515
SP S G S W S+ + +S D S S + GWN E+ W
Sbjct: 1418 SPKSQLGHVASSSKSGIWGSQSSSKVADLRSV----DTTSNSSTQDGWNHVKESPAKPVW 1473
Query: 514 ----TAKKPEVDSLPGGNE-SEGQAWETRTTEAKSSPGWNESGGNPWVTKTPEVGAPTGW 350
T K D+ + S+ W++++ + + GW+ GG + P+
Sbjct: 1474 DTNVTRKSHGADNTWNTSAFSKSNVWDSQSFDKVHNEGWD--GGKWNENQVPD------- 1524
Query: 349 GVKGKQGWKSQVWGSSSFNDRKGPKNNSPRPPASGRPEDRGGW----------RRAEAFS 200
Q WKS+ W SS+ DR+ +N S + ++G +DR GW RR ++F+
Sbjct: 1525 --HKNQSWKSRSWNSSNATDRRTQRNLSNK--SAGTSDDRKGWNSNSMMTSTRRRLDSFT 1580
Query: 199 TEEEKILVDIEPIMNSIRKILRESSDGNRVSPEDQKFITENVFEFHPDKQSKVADQMDYI 20
EEE+ILV+IEP M +IR+ILRESSDG+R+S +DQKFI E VF+ HPDKQ+KVADQ+D+I
Sbjct: 1581 VEEERILVEIEPTMQTIRRILRESSDGDRLSADDQKFIIEKVFQHHPDKQAKVADQIDHI 1640
Query: 19 MVDKH 5
MVDKH
Sbjct: 1641 MVDKH 1645
Score = 86.3 bits (212), Expect = 7e-14
Identities = 77/313 (24%), Positives = 129/313 (41%), Gaps = 8/313 (2%)
Frame = -1
Query: 1579 WGSKEKICAENGN--KSSWEKVSPTAVESESWQAWGSKAKPSADNGNKSRWERASPAVVE 1406
+ K+ + ENG SSWEK+S + S+ WQ W ++ +P D S W+
Sbjct: 1313 YNCKKDVSMENGKVGNSSWEKISDSVAGSDRWQGWENRNQPEMD--MSSGWQ-------- 1362
Query: 1405 LNSQWGCKQKPYADNGNKSSWEKVSPMVAESDNWQGRGNRDQLARDSSEMPTTRADVWSS 1226
W ++P+ D N S QG GN+ ++S+ PTTR VWSS
Sbjct: 1363 ---GWDNGKQPFTDQSNTS---------------QGWGNKKVTDGENSKPPTTRTSVWSS 1404
Query: 1225 WDVAKVQRSNQSTQSRKESDGFSSFDNDEVQKCPIWKTNKPEAVSFSGYEPVKSVNKPDS 1046
WD + VQ + ++ + + +S K IW + V+ S +
Sbjct: 1405 WDASDVQERSPASSPKSQLGHVAS-----SSKSGIWGSQSSSKVADLRSVDTTSNSSTQD 1459
Query: 1045 GWKERVGNESSWTPKKPQVESSTGWADNSENKAWSAKSPDSGWKENIGNNSS-WTARKPE 869
GW N +P KP W N K+ A D+ W + + S+ W ++ +
Sbjct: 1460 GW-----NHVKESPAKPV------WDTNVTRKSHGA---DNTWNTSAFSKSNVWDSQSFD 1505
Query: 868 VQNSSGWQENSEKKIWSAN-LPD---CGIKESQGNKSSWTARKPEAESSSRWQESSEN-K 704
++ GW W+ N +PD K N S+ T R+ + S++ +S++ K
Sbjct: 1506 KVHNEGWDGGK----WNENQVPDHKNQSWKSRSWNSSNATDRRTQRNLSNKSAGTSDDRK 1561
Query: 703 AWSARSPDSGWKR 665
W++ S + +R
Sbjct: 1562 GWNSNSMMTSTRR 1574
>ref|XP_003541591.1| PREDICTED: DNA-directed RNA polymerase V subunit 1-like [Glycine max]
Length = 2020
Score = 159 bits (403), Expect = 5e-36
Identities = 164/585 (28%), Positives = 243/585 (41%), Gaps = 60/585 (10%)
Frame = -1
Query: 1579 WGSKE--------KICAENGNKSSWEKVSPTA----VESESWQAWGSKAKPSADNGNKS- 1439
WGS + K E+ +KS+ S TA +S W AWGS G+K+
Sbjct: 1423 WGSNKSEIPACGSKAVQEDSSKSNTWNTSTTADQTKTKSNEWSAWGSNKSEIPAGGSKAV 1482
Query: 1438 --------RWERASPAVVELN-----SQWGCKQKPYADNGNKSSWEKVSPMVAESDNWQG 1298
W R++ A S WG + G+K+ E S +S+ W
Sbjct: 1483 QEDSSKSNAWNRSTTADQTKTKSNEWSAWGSNKSEIPAGGSKAVQEDSS----KSNAWNT 1538
Query: 1297 RGNRDQLARDSSEMPTTRADVWSSWDVAKVQ---RSNQSTQSRKESDGFSSFDNDEVQ-K 1130
DQ S+E WS+W K + +++ Q +S D+ + K
Sbjct: 1539 STTADQTKTKSNE--------WSAWGSNKSEIPAGGSKAVQEDSSKAWNTSTTADQTKTK 1590
Query: 1129 CPIWK---TNKPEAVSFSGYEPVKSVNKPDSGWKERVGNESSWTPKKPQVESSTGWADNS 959
W +NK E + G + V+ + S WK V E DNS
Sbjct: 1591 SNEWSARVSNKSE-IPAGGSKAVQEDSWGSSKWKADVAQE-----------------DNS 1632
Query: 958 ENKAWSAKSPD-------SGW--------KENIGNNSSWTARKPEVQNSSGWQENSEKKI 824
AW A + D SGW ++N+ ++ RK +V ++NS
Sbjct: 1633 RLGAWDANAADQTKSNEWSGWGKKKDVTQEDNVQHSWGSGKRKDKVTQ----EDNSGSGD 1688
Query: 823 WSANLPDCGIKESQGNKSSWTARKPEAESSSRWQESSENKAWS------ARSPDSGWKRS 662
W AN D I +S SSW K E + + +N +W + +SG
Sbjct: 1689 WGANRTDLAITKSS-EWSSWGKNKTEIPAGG--SANVQNDSWGLGKLNDTQKDNSGCGAW 1745
Query: 661 GENKSSWSSKKPGENTSGQSENVVKDAWSAKSLESGWNQKAENQE-NLTWTAKKPEVDSL 485
GEN S + E G SE +DAW++ N KAE++ N TW K
Sbjct: 1746 GENSGSAWVRNKAETIDGGSEKPQEDAWNSG------NWKAESKVGNTTWGKPK------ 1793
Query: 484 PGGNESEGQAWET--RTTEAKSSPGWNESGGNPWVTKTPEVGAPTGWGVKGKQGWKSQVW 311
SE AW++ ++ + SS GW + E G WG KG+ +K +
Sbjct: 1794 ----SSESHAWDSHNQSNQNSSSQGWESHIAS--ANSENEKGFQ--WG-KGRDSFKKNRF 1844
Query: 310 -GSSSFNDRKGPKNNSPRPPASGRPEDRGGWRRAEAFSTEEEKILVDIEPIMNSIRKILR 134
GS G N RPP R +R + +S+EE+ +L DIEPIM SIR+I++
Sbjct: 1845 EGSQGRGSNAGDWKNRNRPP-------RAPGQRLDIYSSEEQDVLKDIEPIMQSIRRIMQ 1897
Query: 133 ES--SDGNRVSPEDQKFITENVFEFHPDKQSKVADQMDYIMVDKH 5
+ SDG+ ++ EDQ F+ ENVFE HPDK++K+ +DY+MV+KH
Sbjct: 1898 QQGYSDGDPLAAEDQLFVLENVFEHHPDKETKMGAGIDYVMVNKH 1942
Score = 71.2 bits (173), Expect = 2e-09
Identities = 83/376 (22%), Positives = 153/376 (40%), Gaps = 13/376 (3%)
Frame = -1
Query: 1300 GRGNRDQLARDSSEMPTTRADVWSSWDVAKVQRSNQSTQSRKESDGFSSFDNDEVQKCPI 1121
G G++ + DSSE+ + + + + +S T +E+D D D++ +
Sbjct: 1222 GTGSKFDIVWDSSEIKSNEIEGMDVYSFLHMVKS--VTNGEEETDACLGEDIDDLLE--- 1276
Query: 1120 WKTNKPEAVSFSGYEPVKSVNKPDSGWKERVGNESSWTPKKPQVESSTGWADNSENKAWS 941
E G P + +SG+ E V E+ P+ +S GW D S N+ S
Sbjct: 1277 ------EEYMDLGMSP-----QHNSGF-EAVFEEN---PEVLNGSTSNGW-DVSSNQTQS 1320
Query: 940 AKSPDSGWKENIGNNSSWTARKPEVQNSSGWQENSEKKIWSANLPDCGIKESQGNKSSWT 761
+ SGW + + S TA++ + +++S+ W+ + K S W
Sbjct: 1321 KTNEWSGWASSNKDGRSETAQENSWGKTVNQEDSSKSNAWNTSTTADQTKTKSNEWSDWG 1380
Query: 760 ARK---PEAESSSRWQESSENKAWSARSPDSGWKRSGENKSSWSSKKPGENTSG----QS 602
+ K P S + ++SS++ AW+ + + K + S+W S K G Q
Sbjct: 1381 SNKSEIPAGGSKAVQEDSSKSNAWNTSTTSNQTKTKSKEWSAWGSNKSEIPACGSKAVQE 1440
Query: 601 ENVVKDAWSAKSLESGWNQKAENQENLTWTAKKPEVDSLPGGNE------SEGQAWETRT 440
++ + W+ + K ++ E W + K E+ + GG++ S+ AW T
Sbjct: 1441 DSSKSNTWNTSTTAD--QTKTKSNEWSAWGSNKSEIPA--GGSKAVQEDSSKSNAWNRST 1496
Query: 439 TEAKSSPGWNESGGNPWVTKTPEVGAPTGWGVKGKQGWKSQVWGSSSFNDRKGPKNNSPR 260
T ++ NE + W + E+ A V+ + KS W +S+ D+ K+N
Sbjct: 1497 TADQTKTKSNE--WSAWGSNKSEIPAGGSKAVQ-EDSSKSNAWNTSTTADQTKTKSNEWS 1553
Query: 259 PPASGRPEDRGGWRRA 212
S + E G +A
Sbjct: 1554 AWGSNKSEIPAGGSKA 1569
>gb|KQL28710.1| hypothetical protein SETIT_016066mg [Setaria italica]
Length = 2050
Score = 159 bits (401), Expect = 9e-36
Identities = 145/550 (26%), Positives = 240/550 (43%), Gaps = 39/550 (7%)
Frame = -1
Query: 1537 SSWEKVSPTAVESESWQAW--GSKAKPSADNGNKSRWERASPAVVELNSQ----WGCKQK 1376
SSWE+ + +S W W G+ A + + S W+ + A VE NS WG +++
Sbjct: 1341 SSWEQNASAGNDSGDWGGWSNGAAAATKPLDQDNSCWD--AHATVENNSTDWGGWGTEKQ 1398
Query: 1375 PYADNGNKSSW-EKVSPMVAES--DNWQGRGNRDQLARDSSEMPTTRADVWSSWDVAKVQ 1205
+ ++W +K + M + + DNW+ + + + ++ + + D W +
Sbjct: 1399 TNGEQAEINTWADKGAGMESSAGDDNWEMKSSAPEKSKKNLDH-----DTWGNMPAPASA 1453
Query: 1204 RSNQSTQSRKESDGFSSFDNDEVQKCP---------IW--KTNKPEAVSFSGYEPVKSVN 1058
++++T ++ DG + C W KT P S K +
Sbjct: 1454 SASENTWGEQKGDGGDGAWEKQTGSCKEQGMDVDQDSWGKKTMPPS----SNMWDKKKSD 1509
Query: 1057 KPDSGWKERVGNESSWTPKKPQVESSTGWADNSENKAWSAKSPDSGWKENIGNNSSWTAR 878
W+E+ SSW + V+ + W D E ++ + DS W E +S R
Sbjct: 1510 GVHGNWEEQ---PSSWNEQMLNVDQDS-WGDAREKN--NSHAGDSRWPEQ----ASTYKR 1559
Query: 877 KPEVQNSSGWQENS---EKKIWSANLPDCGIKESQGNKSSWTARKPEAESSSRWQESSEN 707
K ++ W + W A G ++ + S K + E+ + E
Sbjct: 1560 KRTNADAGSWDNMAMAPSNNAWDAG-EGFGRSITKSDAGSSWGNKDKMETDEHSKIPKEF 1618
Query: 706 KAWSA-RSPDSGWKRSGENKSSWSSKKPGENTSGQSENVVKDAWS------AKSLESGWN 548
W+ +S +S W+++ + SW N++ + N + +W S + W
Sbjct: 1619 DPWNTGKSNESSWEKTDALQDSWG------NSAADNNNTQEGSWDKIAVKDTNSQQDSWG 1672
Query: 547 QKA---ENQENLTW---TAKKPEVDSLPG-GNESEGQAWETRTTEAKSSPGWNESGGNPW 389
A +N +N +W K P D+ GN + A + ++ S GWN + P
Sbjct: 1673 NVAVQNKNTQNGSWDNGAEKVPTSDAQDSWGNLAATPAGNSDAKQSDSWDGWNAA---PA 1729
Query: 388 VTKTPEVGAPTGWGVKGKQGWKSQVWGSSSFNDRKGPKNNSPRPPASGRPEDRGGWRRAE 209
+ T G +GWKS+ WG S N G +NNS RPP P++RG +
Sbjct: 1730 ENSQGKCNETTDSG--DNKGWKSEGWGGKSGN-WSGQRNNSGRPPRG--PDERGPPPPRQ 1784
Query: 208 AF--STEEEKILVDIEPIMNSIRKILRESSDGNRVSPEDQKFITENVFEFHPDKQSKVAD 35
F + EE+ IL++IEPIM +R+I RE+ +G R+ PED+KFI E V E HP+KQSKV+
Sbjct: 1785 RFELTAEEKNILLEIEPIMMRVRRIFREACNGVRLQPEDEKFILEKVLENHPEKQSKVSS 1844
Query: 34 QMDYIMVDKH 5
+DYI VDKH
Sbjct: 1845 AIDYITVDKH 1854
>ref|XP_004951807.1| PREDICTED: DNA-directed RNA polymerase V subunit 1 [Setaria italica]
Length = 2038
Score = 159 bits (401), Expect = 9e-36
Identities = 145/550 (26%), Positives = 240/550 (43%), Gaps = 39/550 (7%)
Frame = -1
Query: 1537 SSWEKVSPTAVESESWQAW--GSKAKPSADNGNKSRWERASPAVVELNSQ----WGCKQK 1376
SSWE+ + +S W W G+ A + + S W+ + A VE NS WG +++
Sbjct: 1329 SSWEQNASAGNDSGDWGGWSNGAAAATKPLDQDNSCWD--AHATVENNSTDWGGWGTEKQ 1386
Query: 1375 PYADNGNKSSW-EKVSPMVAES--DNWQGRGNRDQLARDSSEMPTTRADVWSSWDVAKVQ 1205
+ ++W +K + M + + DNW+ + + + ++ + + D W +
Sbjct: 1387 TNGEQAEINTWADKGAGMESSAGDDNWEMKSSAPEKSKKNLDH-----DTWGNMPAPASA 1441
Query: 1204 RSNQSTQSRKESDGFSSFDNDEVQKCP---------IW--KTNKPEAVSFSGYEPVKSVN 1058
++++T ++ DG + C W KT P S K +
Sbjct: 1442 SASENTWGEQKGDGGDGAWEKQTGSCKEQGMDVDQDSWGKKTMPPS----SNMWDKKKSD 1497
Query: 1057 KPDSGWKERVGNESSWTPKKPQVESSTGWADNSENKAWSAKSPDSGWKENIGNNSSWTAR 878
W+E+ SSW + V+ + W D E ++ + DS W E +S R
Sbjct: 1498 GVHGNWEEQ---PSSWNEQMLNVDQDS-WGDAREKN--NSHAGDSRWPEQ----ASTYKR 1547
Query: 877 KPEVQNSSGWQENS---EKKIWSANLPDCGIKESQGNKSSWTARKPEAESSSRWQESSEN 707
K ++ W + W A G ++ + S K + E+ + E
Sbjct: 1548 KRTNADAGSWDNMAMAPSNNAWDAG-EGFGRSITKSDAGSSWGNKDKMETDEHSKIPKEF 1606
Query: 706 KAWSA-RSPDSGWKRSGENKSSWSSKKPGENTSGQSENVVKDAWS------AKSLESGWN 548
W+ +S +S W+++ + SW N++ + N + +W S + W
Sbjct: 1607 DPWNTGKSNESSWEKTDALQDSWG------NSAADNNNTQEGSWDKIAVKDTNSQQDSWG 1660
Query: 547 QKA---ENQENLTW---TAKKPEVDSLPG-GNESEGQAWETRTTEAKSSPGWNESGGNPW 389
A +N +N +W K P D+ GN + A + ++ S GWN + P
Sbjct: 1661 NVAVQNKNTQNGSWDNGAEKVPTSDAQDSWGNLAATPAGNSDAKQSDSWDGWNAA---PA 1717
Query: 388 VTKTPEVGAPTGWGVKGKQGWKSQVWGSSSFNDRKGPKNNSPRPPASGRPEDRGGWRRAE 209
+ T G +GWKS+ WG S N G +NNS RPP P++RG +
Sbjct: 1718 ENSQGKCNETTDSG--DNKGWKSEGWGGKSGN-WSGQRNNSGRPPRG--PDERGPPPPRQ 1772
Query: 208 AF--STEEEKILVDIEPIMNSIRKILRESSDGNRVSPEDQKFITENVFEFHPDKQSKVAD 35
F + EE+ IL++IEPIM +R+I RE+ +G R+ PED+KFI E V E HP+KQSKV+
Sbjct: 1773 RFELTAEEKNILLEIEPIMMRVRRIFREACNGVRLQPEDEKFILEKVLENHPEKQSKVSS 1832
Query: 34 QMDYIMVDKH 5
+DYI VDKH
Sbjct: 1833 AIDYITVDKH 1842
>gb|AAX12374.1| DNA-directed RNA polymerase alpha subunit [Spinacia oleracea]
Length = 1902
Score = 156 bits (395), Expect = 4e-35
Identities = 160/603 (26%), Positives = 250/603 (41%), Gaps = 78/603 (12%)
Frame = -1
Query: 1579 WGSKEKICAENGNKSSWEK--VSPTAVESESWQAWGSKAK--PSADNGNKSRWERASPAV 1412
WG+ +K NG K S K ++ +VE WG K D+ ++ W +
Sbjct: 1263 WGAGKKTDDNNGWKKSDSKKDLASGSVEDGGCSGWGPKKDLLQPEDSAGENGWGASKSKS 1322
Query: 1411 VELNSQWGCKQKPYADNGNKSSWEKVSPMVAESDNWQGR-GNRDQLARDSSEM-----PT 1250
E +S WG KP + N W+K +P +S+N +G G D+L +++ P
Sbjct: 1323 KEPSSAWG---KPAQETDN-IGWKKNNPQ-RDSENLEGTSGWNDKLQKENKSFSKQSQPA 1377
Query: 1249 TRADVWSS--------------------WDVAKVQRSNQSTQSRKESDGFSSFDNDEV-- 1136
+ D W S WDVA +ST + + + + DE
Sbjct: 1378 SSKD-WDSTGNITAGSTGFGVEKGNEKPWDVASNVSVKKSTWGQTGGNSWKKNEQDEKDG 1436
Query: 1135 --QKCPIWKTNKPEAVSFSGY---EPVK-----------SVNKP-DSGWKE--------- 1034
Q P K++K SG PV S +P DS K
Sbjct: 1437 DPQGLPWGKSHKSSDSWTSGQGNQHPVSQGVSEKQGTLSSWGQPRDSSQKNNNENGVSSN 1496
Query: 1033 --RVGNESSWTPKKPQVESSTGWADNSENKAWSAKSPDSGWKENIGNNSS-WTARKPEVQ 863
R G SW KK + + WA ++ +K S K N NS W+ K V
Sbjct: 1497 FNRQGAGKSWDSKKKESNVQSSWAQQGDSTWKDSKEARSSVKANNSTNSGGWSTGKALVD 1556
Query: 862 N-SSGW---------QENSEKKIWSANLPDCGIKESQGNKSSWTARKPEAESSSRWQESS 713
SS W +++++ + N D KE SSW A+K E ++ S W + S
Sbjct: 1557 GVSSSWGSQKEDRPQPKSNDRSVGDGNF-DKDAKEE--GLSSWDAKKVERKTQSSWGQPS 1613
Query: 712 ENKAWSARSPDSGWKRSGENKSSWSSKKPGENTSGQSENVVKDAWSAKSLESGWNQKAEN 533
E+K SA+S W N+ SS E+T+ ++ +D+W ++
Sbjct: 1614 ESKN-SAQSSADHWGSDKSNQPGKSSGWGSEDTNAGKDSEKQDSWGKSNVS--------- 1663
Query: 532 QENLTWTAKKPEVDSLPGGNESEGQAWETRTTEAKSSPGWNESGGNPWVTKTPEVGAPTG 353
TW KK + L G ++S+ SP W + GG+ W K PE G G
Sbjct: 1664 ----TW--KKESGEKLHGSDDSQ-------------SP-WGQPGGSGWNKKQPEGGR--G 1701
Query: 352 WGVKGKQGWKSQVWGSSSFNDR-----KGPKNNSPRPPASGRPEDRGGWRRAEAFSTEEE 188
WG WKS+ + + N +GP ++SPR + +R + F TEE+
Sbjct: 1702 WGSSNTGEWKSRKNQNQNQNQNQNRPPRGPNDDSPRVALTATR------KRMDEFPTEEK 1755
Query: 187 KILVDIEPIMNSIRKILRESS--DGNRVSPEDQKFITENVFEFHPDKQSKVADQMDYIMV 14
+L ++E +M SIR+I+ +S DG + P+DQ ++ +N+ +HPDK +K+ +D+I V
Sbjct: 1756 DVLSEVESLMQSIRRIMHQSGCVDGEPLLPDDQTYLIDNILNYHPDKAAKIGAGVDFITV 1815
Query: 13 DKH 5
KH
Sbjct: 1816 KKH 1818
Score = 87.8 bits (216), Expect = 2e-14
Identities = 92/461 (19%), Positives = 165/461 (35%), Gaps = 35/461 (7%)
Frame = -1
Query: 1546 GNKSSWEKVSPTAVESES-----WQAWGSKAKPSADNGNKSRWERASPAVVELNS----- 1397
G SSW A +S W + GSK KP ++ +KS AS + N
Sbjct: 1137 GGWSSWGSKKDQANPEDSSKTGGWSSGGSKQKPQPEDSSKSGGWDASKSWGGSNQGDPSP 1196
Query: 1396 QWGCKQKPYADNGNKSSWEKVSPMVAESDNWQGRGNRDQLARDSSEMPTTRADVWSSWDV 1217
WG K D ++ S AE W G + L++ + D SW
Sbjct: 1197 VWGQPVKATNDISIENDHGSGS---AEGGGWANSGMKKDLSKQENSSTAGGWDASKSWSG 1253
Query: 1216 AKVQRSNQSTQSRKESDGFSSFDNDEVQKCPIWKTNKPEAVSFSGYEPVKSVNKP----- 1052
+K + + + + K++D + + + +K + E SG+ P K + +P
Sbjct: 1254 SKPKDPSSAWGAGKKTDDNNGWKKSDSKK--DLASGSVEDGGCSGWGPKKDLLQPEDSAG 1311
Query: 1051 DSGW---KERVGNESSWTPKKPQVESSTGWADNSENKAWSAKSPDSGWKENIGNNSSWTA 881
++GW K + SS K Q + GW N+ + SGW + + + +
Sbjct: 1312 ENGWGASKSKSKEPSSAWGKPAQETDNIGWKKNNPQRDSENLEGTSGWNDKLQKENKSFS 1371
Query: 880 RKPEVQNSSGWQENSEKKIWSANLPDCGIKESQGNKSSWTARKPEAESSSRWQESSENKA 701
++ + +S W S G +GN+ W + S W ++ N +
Sbjct: 1372 KQSQPASSKDWDSTGNITAGST-----GFGVEKGNEKPWDVASNVSVKKSTWGQTGGN-S 1425
Query: 700 WSARSPDS--------GWKRSGENKSSWSSKKPGENTSGQSENVVKDAWSAKSLESGWNQ 545
W D W +S ++ SW+S + ++ Q + + S+ +Q
Sbjct: 1426 WKKNEQDEKDGDPQGLPWGKSHKSSDSWTSGQGNQHPVSQGVSEKQGTLSSWGQPRDSSQ 1485
Query: 544 KAENQENLTWTAKKPEVDSLPGGNESEGQAWETRTTEAKSSPGWNESGGNPWVTKTPEVG 365
K N+ ++ + + G++W+++ E+ W + G + W
Sbjct: 1486 KNNNENGVSSNFNR----------QGAGKSWDSKKKESNVQSSWAQQGDSTWKDSKEARS 1535
Query: 364 APTGWGVKGKQGWK---------SQVWGSSSFNDRKGPKNN 269
+ GW S WGS DR PK+N
Sbjct: 1536 SVKANNSTNSGGWSTGKALVDGVSSSWGSQK-EDRPQPKSN 1575
Score = 62.4 bits (150), Expect = 1e-06
Identities = 80/338 (23%), Positives = 121/338 (35%), Gaps = 62/338 (18%)
Frame = -1
Query: 1066 SVNKPDSGWKERVGNESSWTPKK----PQVESST-GWA-----------DNSENKAWSAK 935
+ NK D+G G SSW KK P+ S T GW+ D+S++ W A
Sbjct: 1124 NANKIDTGSGSAEGGWSSWGSKKDQANPEDSSKTGGWSSGGSKQKPQPEDSSKSGGWDAS 1183
Query: 934 ---------SPDSGWKENIGNNSSWTARKPEVQNSS---GWQENSEKKIWSANLPDCGIK 791
P W + + + + S+ GW + KK D +
Sbjct: 1184 KSWGGSNQGDPSPVWGQPVKATNDISIENDHGSGSAEGGGWANSGMKK-------DLSKQ 1236
Query: 790 ESQGNKSSWTARKPEAESSSRWQESSENKAWSA---RSPDSGWKRSGENK---------- 650
E+ W A K S S + + AW A ++GWK+S K
Sbjct: 1237 ENSSTAGGWDASK----SWSGSKPKDPSSAWGAGKKTDDNNGWKKSDSKKDLASGSVEDG 1292
Query: 649 --SSWSSKK--------PGENTSGQSENVVKDAWSAKSLESGWNQKAENQENLTWTAKKP 500
S W KK GEN G S++ +K S W + A+ +N+ W P
Sbjct: 1293 GCSGWGPKKDLLQPEDSAGENGWGASKS------KSKEPSSAWGKPAQETDNIGWKKNNP 1346
Query: 499 EVDS--LPGGN------ESEGQAWETRTTEAKSSPGWNESGGNPWVTKT---PEVGAPTG 353
+ DS L G + + E +++ ++ ++ SS W +S GN T E G
Sbjct: 1347 QRDSENLEGTSGWNDKLQKENKSF-SKQSQPASSKDW-DSTGNITAGSTGFGVEKGNEKP 1404
Query: 352 WGVKGKQGWKSQVWGSSSFNDRKGPKNNSPRPPASGRP 239
W V K WG + N K + + G P
Sbjct: 1405 WDVASNVSVKKSTWGQTGGNSWKKNEQDEKDGDPQGLP 1442
>gb|KRH20723.1| hypothetical protein GLYMA_13G196900 [Glycine max]
Length = 2020
Score = 156 bits (394), Expect = 6e-35
Identities = 158/612 (25%), Positives = 248/612 (40%), Gaps = 87/612 (14%)
Frame = -1
Query: 1579 WGSKEKICAENGNKSSWEKVSP------------TAVESESWQAWGSKAKP--------- 1463
WGS + G+K+ E S T +S+ W AWGS
Sbjct: 1379 WGSNKSEIPAGGSKAVQEDSSKSNAWNTSTTSNQTKTKSKEWSAWGSNKSEIPACGSKAV 1438
Query: 1462 SADNGNKSRWERASPAVVELN-----SQWGCKQKPYADNGNKSSWEKVSPMVAESDNWQG 1298
D+ + W ++ A S WG + G+K+ E S +S+ W
Sbjct: 1439 QEDSSKSNTWNTSTTADQTKTKSNEWSAWGSNKSEIPAGGSKAVQEDSS----KSNAWNT 1494
Query: 1297 RGNRDQLARDSSEMPTTRADVWSSWDVAKVQ--------------------RSNQSTQSR 1178
DQ S+E WS+W+ K + RS + Q++
Sbjct: 1495 STTVDQTKTKSNE--------WSAWESNKSEIPAGGSKAVQEDSSKSNAWNRSTTADQTK 1546
Query: 1177 KESDGFSSFDNDEVQKCPIWKTNKPEAVSFSGYEPVKSVNKP---DSGWKERVGNESSWT 1007
+S+ +S++ +++ + P + + S + + ++ + W RV N+S
Sbjct: 1547 TKSNEWSAWGSNK-SEIPAGGSKAVQEDSSKAWNTSTTADQTKTKSNEWSARVSNKSEIP 1605
Query: 1006 PKKPQVESSTGWA-----------DNSENKAWSAKSPD-------SGW--------KENI 905
+ W DNS AW A + D SGW ++N+
Sbjct: 1606 AGGSKAVQEDSWGSSKWKADVAQEDNSRLGAWDANAADQTKSNEWSGWGKKKDVTQEDNV 1665
Query: 904 GNNSSWTARKPEVQNSSGWQENSEKKIWSANLPDCGIKESQGNKSSWTARKPEAESSSRW 725
++ RK +V ++NS W AN D I +S SSW K E +
Sbjct: 1666 QHSWGSGKRKDKVTQ----EDNSGSGDWGANRTDLAITKSS-EWSSWGKNKTEIPAGG-- 1718
Query: 724 QESSENKAWS------ARSPDSGWKRSGENKSSWSSKKPGENTSGQSENVVKDAWSAKSL 563
+ +N +W + +SG GEN S + E G SE +DAW++
Sbjct: 1719 SANVQNDSWGLGKLNDTQKDNSGCGAWGENSGSAWVRNKAETIDGGSEKPQEDAWNSG-- 1776
Query: 562 ESGWNQKAENQE-NLTWTAKKPEVDSLPGGNESEGQAWET--RTTEAKSSPGWNESGGNP 392
N KAE++ N TW K SE AW++ ++ + SS GW +
Sbjct: 1777 ----NWKAESKVGNTTWGKPK----------SSESHAWDSHNQSNQNSSSQGWESHIAS- 1821
Query: 391 WVTKTPEVGAPTGWGVKGKQGWKSQVW-GSSSFNDRKGPKNNSPRPPASGRPEDRGGWRR 215
E G WG KG+ +K + GS G N RPP R +R
Sbjct: 1822 -ANSENEKGFQ--WG-KGRDSFKKNRFEGSQGRGSNAGDWKNRNRPP-------RAPGQR 1870
Query: 214 AEAFSTEEEKILVDIEPIMNSIRKILRES--SDGNRVSPEDQKFITENVFEFHPDKQSKV 41
+ +S+EE+ +L DIEPIM SIR+I+++ SDG+ ++ EDQ F+ ENVFE HPDK++K+
Sbjct: 1871 LDIYSSEEQDVLKDIEPIMQSIRRIMQQQGYSDGDPLAAEDQLFVLENVFEHHPDKETKM 1930
Query: 40 ADQMDYIMVDKH 5
+DY+MV+KH
Sbjct: 1931 GAGIDYVMVNKH 1942
Score = 72.8 bits (177), Expect = 8e-10
Identities = 84/376 (22%), Positives = 153/376 (40%), Gaps = 13/376 (3%)
Frame = -1
Query: 1300 GRGNRDQLARDSSEMPTTRADVWSSWDVAKVQRSNQSTQSRKESDGFSSFDNDEVQKCPI 1121
G G++ + DSSE+ + + + + +S T +E+D D D++ +
Sbjct: 1222 GTGSKFDIVWDSSEIKSNEIEGMDVYSFLHMVKS--VTNGEEETDACLGEDIDDLLE--- 1276
Query: 1120 WKTNKPEAVSFSGYEPVKSVNKPDSGWKERVGNESSWTPKKPQVESSTGWADNSENKAWS 941
E G P + +SG+ E V E+ P+ +S GW D S N+ S
Sbjct: 1277 ------EEYMDLGMSP-----QHNSGF-EAVFEEN---PEVLNGSTSNGW-DVSSNQTQS 1320
Query: 940 AKSPDSGWKENIGNNSSWTARKPEVQNSSGWQENSEKKIWSANLPDCGIKESQGNKSSWT 761
+ SGW + + S TA++ + +++S+ W+ + K S W
Sbjct: 1321 KTNEWSGWASSNKDGRSETAQENSWGKTVNQEDSSKSNAWNTSTTADQTKTKSNEWSDWG 1380
Query: 760 ARK---PEAESSSRWQESSENKAWSARSPDSGWKRSGENKSSWSSKKPGENTSG----QS 602
+ K P S + ++SS++ AW+ + + K + S+W S K G Q
Sbjct: 1381 SNKSEIPAGGSKAVQEDSSKSNAWNTSTTSNQTKTKSKEWSAWGSNKSEIPACGSKAVQE 1440
Query: 601 ENVVKDAWSAKSLESGWNQKAENQENLTWTAKKPEVDSLPGGNE------SEGQAWETRT 440
++ + W+ + K ++ E W + K E+ + GG++ S+ AW T T
Sbjct: 1441 DSSKSNTWNTSTTAD--QTKTKSNEWSAWGSNKSEIPA--GGSKAVQEDSSKSNAWNTST 1496
Query: 439 TEAKSSPGWNESGGNPWVTKTPEVGAPTGWGVKGKQGWKSQVWGSSSFNDRKGPKNNSPR 260
T ++ NE + W + E+ A V+ + KS W S+ D+ K+N
Sbjct: 1497 TVDQTKTKSNE--WSAWESNKSEIPAGGSKAVQ-EDSSKSNAWNRSTTADQTKTKSNEWS 1553
Query: 259 PPASGRPEDRGGWRRA 212
S + E G +A
Sbjct: 1554 AWGSNKSEIPAGGSKA 1569
>gb|AIO05699.1| DNA-directed RNA polymerase V subunit 1, partial [Cocos nucifera]
Length = 1673
Score = 156 bits (394), Expect = 6e-35
Identities = 128/419 (30%), Positives = 188/419 (44%), Gaps = 24/419 (5%)
Frame = -1
Query: 1189 TQSRKESDGFSSFDNDEVQK------CPIWKTNKPEAVSFSGYEPVKSVNKPDSGWKERV 1028
T S++E+ S D D+++ C + E G++ ++ K S +V
Sbjct: 1267 TSSQREAGDGCSLDVDDLEANENNEVCLSPEIGFEELTFDDGFDVDYNLKKDVSMENGKV 1326
Query: 1027 GNESSWTPKKPQVESSTGWADNSENKAWSAKSPDSGWKENIGNNSSWTARKPEVQNSSGW 848
G +SSW V S W EN+ S W+ +T R S GW
Sbjct: 1327 G-KSSWEKISDSVAGSDRW-QGWENRNQPEMDVSSDWQGWDNGKQPFTDRS---NRSQGW 1381
Query: 847 QENSEKKIWSANLPDCGIKESQGNKSSWTARKPEAESSSRWQESSENKAWSARSPDS--G 674
K + G S +P SS W + + A SP S G
Sbjct: 1382 GNE---------------KVTDGENSILPTTRPSVWSS--WDATDVQERSPASSPKSQLG 1424
Query: 673 WKRSGENKSSWSSKKPGENTSGQSENVVKDAWSAKSLESGWNQKAENQENLTW----TAK 506
S W S +N S ++ D+ S S + GWN E+ W T K
Sbjct: 1425 HVASSSKSGIWGS----QNFSKVADLRSVDSTSKSSTQDGWNHVKESPAKPVWDTNVTRK 1480
Query: 505 KPEVDSLPGGNE-SEGQAWETRTTEAKSSPGWNESGGNPW-VTKTPEVGAPTGWGVKGKQ 332
E D+ + S+ W +++ + S G S G W + P+ + Q
Sbjct: 1481 SHEADNTWNTSAFSKSNVWGSQSFDKVHSEG---SDGGRWNENQVPD---------RKNQ 1528
Query: 331 GWKSQVWGSSSFNDRKGPKNNSPRPPASGRPEDRGGW----------RRAEAFSTEEEKI 182
WKS+ W SS+ DR+ +N+S + + +DR GW RR ++F+ EEE+I
Sbjct: 1529 SWKSRGWNSSNATDRRTQRNHSNKSAMTS--DDRKGWNSNSMMTSTRRRLDSFTVEEERI 1586
Query: 181 LVDIEPIMNSIRKILRESSDGNRVSPEDQKFITENVFEFHPDKQSKVADQMDYIMVDKH 5
L++IEP M +IR+ILRESSDG+++S +DQKFI E VF+ HPDKQ+KVADQ+D+IMVDKH
Sbjct: 1587 LIEIEPTMQTIRRILRESSDGDQLSADDQKFIIERVFQHHPDKQAKVADQIDHIMVDKH 1645
Score = 87.0 bits (214), Expect = 4e-14
Identities = 71/301 (23%), Positives = 123/301 (40%), Gaps = 12/301 (3%)
Frame = -1
Query: 1570 KEKICAENGN--KSSWEKVSPTAVESESWQAWGSKAKPSADNGNKSRWERASPAVVELNS 1397
K+ + ENG KSSWEK+S + S+ WQ W ++ +P D S W+
Sbjct: 1316 KKDVSMENGKVGKSSWEKISDSVAGSDRWQGWENRNQPEMD--VSSDWQ----------- 1362
Query: 1396 QWGCKQKPYADNGNKSSWEKVSPMVAESDNWQGRGNRDQLARDSSEMPTTRADVWSSWDV 1217
W ++P+ D N+S QG GN ++S +PTTR VWSSWD
Sbjct: 1363 GWDNGKQPFTDRSNRS---------------QGWGNEKVTDGENSILPTTRPSVWSSWDA 1407
Query: 1216 AKVQRSNQSTQSRKESDGFSSFDNDEVQKCPIWKTNKPEAVSFSGYEPVKSVNKPDSGWK 1037
VQ + ++ + + +S K IW + +FS ++SV+
Sbjct: 1408 TDVQERSPASSPKSQLGHVAS-----SSKSGIWGSQ-----NFSKVADLRSVDSTSKSST 1457
Query: 1036 ERVGNESSWTPKKPQVESSTGWADNSENKAWSAKSPDSGWKENIGNNSSWTARKPEVQNS 857
+ N +P KP +++ + + W+ + K N+ + S+ E +
Sbjct: 1458 QDGWNHVKESPAKPVWDTNVTRKSHEADNTWNTSAFS---KSNVWGSQSFDKVHSEGSDG 1514
Query: 856 SGWQENS----EKKIW------SANLPDCGIKESQGNKSSWTARKPEAESSSRWQESSEN 707
W EN + + W S+N D + + NKS+ T+ + +S+ S+
Sbjct: 1515 GRWNENQVPDRKNQSWKSRGWNSSNATDRRTQRNHSNKSAMTSDDRKGWNSNSMMTSTRR 1574
Query: 706 K 704
+
Sbjct: 1575 R 1575
>ref|XP_002879839.1| NRPD1b [Arabidopsis lyrata subsp. lyrata] gi|297325678|gb|EFH56098.1|
NRPD1b [Arabidopsis lyrata subsp. lyrata]
Length = 1947
Score = 156 bits (394), Expect = 6e-35
Identities = 146/561 (26%), Positives = 235/561 (41%), Gaps = 57/561 (10%)
Frame = -1
Query: 1516 PTAVESESWQAWGSKAKPSADNGNKSR-WERASPAVVELNSQWGCKQKPYADNGNKSSWE 1340
P +S +Q + KPS N KS W+ S+WG + + +S+WE
Sbjct: 1291 PKFEDSAEFQNLHDEGKPSESNWEKSSSWDNGCSG----GSEWGVSKNTGGEANPESNWE 1346
Query: 1339 KVSPMVAESDNWQGRGNRDQLARDSSEMPTTRADVWSSWDVAKVQRSNQSTQSRKESDGF 1160
K + + E D WSSW+ K + +S K G
Sbjct: 1347 KTTNVEKE-------------------------DAWSSWNTKK-----DAQESSKSDSGV 1376
Query: 1159 S---SFDNDEVQKCPIWKTNKPEAVSFSGYEPVKSVNKPDSG-WKERVGNESSWTPKKPQ 992
+ +D+ P W+T + S V N+P S W + G++ SW K
Sbjct: 1377 AWGLKTKDDDADTTPNWETRPAQTDSI-----VPENNEPTSDVWGHKSGSDKSWDKKNGG 1431
Query: 991 VESSTGWADNSENKAWSAKSPDSGWKENIGNNSSWTAR---KPEVQNSSG----WQENSE 833
ES+ +++ W S D E + ++W +R EV + +G W + S
Sbjct: 1432 TESAPAAWGSTDAAVWG--SSDKKNSETESDAAAWGSRDKKNSEVGSGAGVLGPWNKKSS 1489
Query: 832 KKIWSANLPDCGIKESQGNK--SSWTARKPEAESS-SRWQESSENKAWSARSPDSGWKRS 662
K K G SSW + E +S + W S+NK + P S W
Sbjct: 1490 KTESDGATWGSSDKTKSGAAAWSSWDKKNMETDSEPAAWGSQSKNKPETESGP-STW--- 1545
Query: 661 GENKSSWSSKKPGENTSGQSENVVKDAWSAKSLESG------WNQKAENQEN--LTWTAK 506
+W +KK E SG + + D ++++ ESG W++K N E+ W +
Sbjct: 1546 ----GAWDTKK-SETESGPAGWGIVDKKNSET-ESGPAAMGNWDKKKSNTESGPAAWGST 1599
Query: 505 KPEV----DSLPGGNESEGQAWETR---TTEAKS-SPGW---------------NESGGN 395
V D ES+ AW +R T+E +S + W NE N
Sbjct: 1600 DAAVWGFSDKNNSETESDAAAWGSRDKKTSETESGAAAWGSWGQPTPTAANEDANEDDEN 1659
Query: 394 PWVT------KTPEVGAPTGWGVKGKQGWKSQVWGSSSFNDRKGPKNNSPRPPASG---R 242
PWV+ + + WG K+ S W + D KG +N++PRPP S
Sbjct: 1660 PWVSLKETKSRDKDDKERIQWGNPAKKFPSSGGWSNGGGADWKGKRNHTPRPPRSEDNLA 1719
Query: 241 PEDRGGWRRAEAFSTEEEKILVDIEPIMNSIRKILRESS--DGNRVSPEDQKFITENVFE 68
P +R ++F++EE+++L D+EP+M ++RKI+ S+ DG+ +S +D+ F+ E +
Sbjct: 1720 PMFTATRQRLDSFTSEEQELLSDVEPVMRTLRKIMHPSAYPDGDPISDDDKTFVLEKILN 1779
Query: 67 FHPDKQSKVADQMDYIMVDKH 5
FHP K++K+ +D+I VDKH
Sbjct: 1780 FHPQKETKLGSGVDFITVDKH 1800
Score = 59.3 bits (142), Expect = 9e-06
Identities = 80/360 (22%), Positives = 133/360 (36%), Gaps = 24/360 (6%)
Frame = -1
Query: 1579 WGSKEKICAENGNKSSWEKVS------PTAVESESWQAWGSKAKPSADNGNKSRWERASP 1418
WG K +G+ SW+K + P A S WGS K +++ + +
Sbjct: 1415 WGHK------SGSDKSWDKKNGGTESAPAAWGSTDAAVWGSSDKKNSETESDA------- 1461
Query: 1417 AVVELNSQWGCKQKPYADNGNKSS----WEKVSPMVAESDNWQGRGNRDQLARDSSEMPT 1250
+ WG + K ++ G+ + W K S + D SS+
Sbjct: 1462 ------AAWGSRDKKNSEVGSGAGVLGPWNKKS----------SKTESDGATWGSSDKTK 1505
Query: 1249 TRADVWSSWDVAKVQRSNQSTQSRKESDGFSSFDNDEVQKCP----IWKTNKPEAVSF-S 1085
+ A WSSWD + N T S + G S + E + P W T K E S +
Sbjct: 1506 SGAAAWSSWD-----KKNMETDSEPAAWGSQSKNKPETESGPSTWGAWDTKKSETESGPA 1560
Query: 1084 GYEPVKSVNKPDSGWKERVGNESSWTPKKPQVESSTGWADNSENKAWSAKSPDSGWKENI 905
G+ V N +GN W KK ES +++ W D E
Sbjct: 1561 GWGIVDKKNSETESGPAAMGN---WDKKKSNTESGPAAWGSTDAAVWGFS--DKNNSETE 1615
Query: 904 GNNSSWTAR-KPEVQNSSG---WQENSEKKIWSANLPDCGIKE-SQGNKSSWTARKPEAE 740
+ ++W +R K + SG W W P ++ ++ +++ W + K E
Sbjct: 1616 SDAAAWGSRDKKTSETESGAAAWGS------WGQPTPTAANEDANEDDENPWVSLK---E 1666
Query: 739 SSSRWQESSENKAW---SARSPDS-GWKRSGENKSSWSSKKPGENTSGQSENVVKDAWSA 572
+ SR ++ E W + + P S GW G + W K+ +SE+ + ++A
Sbjct: 1667 TKSRDKDDKERIQWGNPAKKFPSSGGWSNGG--GADWKGKRNHTPRPPRSEDNLAPMFTA 1724
>gb|KMT17107.1| hypothetical protein BVRB_2g041610 [Beta vulgaris subsp. vulgaris]
Length = 1973
Score = 154 bits (388), Expect = 3e-34
Identities = 177/678 (26%), Positives = 266/678 (39%), Gaps = 153/678 (22%)
Frame = -1
Query: 1579 WGSKEKI----CAENGNKSSWEKV----SPTAVESESWQAWGSKAK-PSADNGNKSRWER 1427
W SK+ + AE G SSWE S + E W +WGSK P ++ +KS W
Sbjct: 1206 WESKKDLPSSGSAEGGGWSSWESKKELPSSGSAEGGGWSSWGSKKDLPQPEDSSKS-WGG 1264
Query: 1426 ASPAVVELNSQWGCKQKPYADNGNKSSW--EKVSPMVAESD-NWQGRGNRDQLARDSSEM 1256
A +++ K+ G SSW +K P +S +W G ++ + S+
Sbjct: 1265 AKLKEPS-SARESDKETDNGGGGGWSSWGSKKDLPQTEDSSKSWGGAKLKEPSSARESDK 1323
Query: 1255 PTTR--ADVWSSW----DVAKVQRSNQSTQSRKESDGFSSFDNDEVQKCPI-W--KTNKP 1103
T WSSW D+ + + S++S + K + S+ + D+ I W K +K
Sbjct: 1324 ETDNDSGGGWSSWGSKKDLPQPEDSSKSWGAAKLKEPSSAHEPDKETNNDIGWIKKGSKQ 1383
Query: 1102 EAVS-------FSGYEPVKSVNKPDS---GWKERV----------------GNESSW--- 1010
+ S +S + K + +P+S GW NES+W
Sbjct: 1384 DLTSGLVDGGGWSSWGVKKDLTQPESMANGWDASKKNDEKPNGDKQVSWGKSNESTWGTS 1443
Query: 1009 ---------TPKKPQVESSTGWADNSENKAWSA--KSPDSGWKENIGNNSSWTARKPEVQ 863
T + ++ E+KA S+ K DS WK+N NN + R V
Sbjct: 1444 LKNAGNWNSTGVNQHADYQRSVSEKEESKAPSSWGKPRDSSWKKN--NNENEGGRSSSVL 1501
Query: 862 NSSG----WQENSEKK----IWSAN-----------LPDCGIKESQGNKSSWTARKPEAE 740
N G W NS KK W +N CG +Q SW +K +
Sbjct: 1502 NQEGGFRSW--NSTKKDTNSTWKSNEAMIVGGSSSEFKVCGEDSTQ----SWDTKKHDNR 1555
Query: 739 SSSRWQESSENK----AWSARSPD-----SGW---KRSGENKSSWSSKKPGENTSG---- 608
+ S W +SS WS S W K S E WS K GE SG
Sbjct: 1556 TKSSWGQSSNGSKNADGWSTGKASGDGVSSTWEQLKNSSEGAEGWS-KPGGEGGSGSWDS 1614
Query: 607 -QSENVVKDAWSA----KSLESGWNQKAENQENLT--WTAKKPEVDSLPG---------- 479
+ EN K W K WN ++E W +KKPE S P
Sbjct: 1615 QKEENKTKSCWGKPKNNKDSAGHWNMNKASEEGDVSGWVSKKPEGKSQPSWGQSNDGSKD 1674
Query: 478 ------GNESEGQA--WETRTTEAKSSPGWNESGGNP-----W---------VTKTPEVG 365
G SEG W ++ E KS P W +S W V+ +
Sbjct: 1675 AGGWSTGKASEGDVSGWVSKKPEGKSQPSWGQSNNGSKDAGGWSTGKAFGDGVSSSGGDK 1734
Query: 364 APTGWGV-----KGKQGWKSQV------WGSSSFNDRKGPKNNSPRPPASGRPEDRG--- 227
+ WG +G GWK + WGSS+ + + N P+ + G
Sbjct: 1735 CQSSWGQSDNSSEGAGGWKKKQPEGGRGWGSSNSGEWRSRMNRPPKQHGGPNDDSTGVAF 1794
Query: 226 --GWRRAEAFSTEEEKILVDIEPIMNSIRKILRES--SDGNRVSPEDQKFITENVFEFHP 59
+R + FS+EE+ +L ++E IM SIR+I+ +S +DG + +DQ ++ +N+ +HP
Sbjct: 1795 TATRKRMDLFSSEEQGVLSEVESIMQSIRRIMHQSGCNDGEPLPSDDQTYVIDNILNYHP 1854
Query: 58 DKQSKVADQMDYIMVDKH 5
DK++K+ +D+I V KH
Sbjct: 1855 DKEAKIGAGVDFITVKKH 1872
>ref|XP_010670484.1| PREDICTED: DNA-directed RNA polymerase V subunit 1 [Beta vulgaris
subsp. vulgaris]
Length = 2089
Score = 154 bits (388), Expect = 3e-34
Identities = 177/678 (26%), Positives = 266/678 (39%), Gaps = 153/678 (22%)
Frame = -1
Query: 1579 WGSKEKI----CAENGNKSSWEKV----SPTAVESESWQAWGSKAK-PSADNGNKSRWER 1427
W SK+ + AE G SSWE S + E W +WGSK P ++ +KS W
Sbjct: 1322 WESKKDLPSSGSAEGGGWSSWESKKELPSSGSAEGGGWSSWGSKKDLPQPEDSSKS-WGG 1380
Query: 1426 ASPAVVELNSQWGCKQKPYADNGNKSSW--EKVSPMVAESD-NWQGRGNRDQLARDSSEM 1256
A +++ K+ G SSW +K P +S +W G ++ + S+
Sbjct: 1381 AKLKEPS-SARESDKETDNGGGGGWSSWGSKKDLPQTEDSSKSWGGAKLKEPSSARESDK 1439
Query: 1255 PTTR--ADVWSSW----DVAKVQRSNQSTQSRKESDGFSSFDNDEVQKCPI-W--KTNKP 1103
T WSSW D+ + + S++S + K + S+ + D+ I W K +K
Sbjct: 1440 ETDNDSGGGWSSWGSKKDLPQPEDSSKSWGAAKLKEPSSAHEPDKETNNDIGWIKKGSKQ 1499
Query: 1102 EAVS-------FSGYEPVKSVNKPDS---GWKERV----------------GNESSW--- 1010
+ S +S + K + +P+S GW NES+W
Sbjct: 1500 DLTSGLVDGGGWSSWGVKKDLTQPESMANGWDASKKNDEKPNGDKQVSWGKSNESTWGTS 1559
Query: 1009 ---------TPKKPQVESSTGWADNSENKAWSA--KSPDSGWKENIGNNSSWTARKPEVQ 863
T + ++ E+KA S+ K DS WK+N NN + R V
Sbjct: 1560 LKNAGNWNSTGVNQHADYQRSVSEKEESKAPSSWGKPRDSSWKKN--NNENEGGRSSSVL 1617
Query: 862 NSSG----WQENSEKK----IWSAN-----------LPDCGIKESQGNKSSWTARKPEAE 740
N G W NS KK W +N CG +Q SW +K +
Sbjct: 1618 NQEGGFRSW--NSTKKDTNSTWKSNEAMIVGGSSSEFKVCGEDSTQ----SWDTKKHDNR 1671
Query: 739 SSSRWQESSENK----AWSARSPD-----SGW---KRSGENKSSWSSKKPGENTSG---- 608
+ S W +SS WS S W K S E WS K GE SG
Sbjct: 1672 TKSSWGQSSNGSKNADGWSTGKASGDGVSSTWEQLKNSSEGAEGWS-KPGGEGGSGSWDS 1730
Query: 607 -QSENVVKDAWSA----KSLESGWNQKAENQENLT--WTAKKPEVDSLPG---------- 479
+ EN K W K WN ++E W +KKPE S P
Sbjct: 1731 QKEENKTKSCWGKPKNNKDSAGHWNMNKASEEGDVSGWVSKKPEGKSQPSWGQSNDGSKD 1790
Query: 478 ------GNESEGQA--WETRTTEAKSSPGWNESGGNP-----W---------VTKTPEVG 365
G SEG W ++ E KS P W +S W V+ +
Sbjct: 1791 AGGWSTGKASEGDVSGWVSKKPEGKSQPSWGQSNNGSKDAGGWSTGKAFGDGVSSSGGDK 1850
Query: 364 APTGWGV-----KGKQGWKSQV------WGSSSFNDRKGPKNNSPRPPASGRPEDRG--- 227
+ WG +G GWK + WGSS+ + + N P+ + G
Sbjct: 1851 CQSSWGQSDNSSEGAGGWKKKQPEGGRGWGSSNSGEWRSRMNRPPKQHGGPNDDSTGVAF 1910
Query: 226 --GWRRAEAFSTEEEKILVDIEPIMNSIRKILRES--SDGNRVSPEDQKFITENVFEFHP 59
+R + FS+EE+ +L ++E IM SIR+I+ +S +DG + +DQ ++ +N+ +HP
Sbjct: 1911 TATRKRMDLFSSEEQGVLSEVESIMQSIRRIMHQSGCNDGEPLPSDDQTYVIDNILNYHP 1970
Query: 58 DKQSKVADQMDYIMVDKH 5
DK++K+ +D+I V KH
Sbjct: 1971 DKEAKIGAGVDFITVKKH 1988
>ref|XP_009133402.1| PREDICTED: DNA-directed RNA polymerase V subunit 1 [Brassica rapa]
Length = 2059
Score = 154 bits (388), Expect = 3e-34
Identities = 152/612 (24%), Positives = 248/612 (40%), Gaps = 87/612 (14%)
Frame = -1
Query: 1579 WGSKEKICAENGNKSSW--EKVSPTAVESESWQAWGSKAKPSADNG--NKSRWERASPAV 1412
WG I E+ + S W +K + A ++SW AWGSK K A+N N + +V
Sbjct: 1345 WGKAANIEKEDAS-SGWNSKKDAQEATNTDSWGAWGSKTKDDAENATPNWGTKPAQNDSV 1403
Query: 1411 VELNSQ-----WGCKQKPYADNGNKSSWEKVSPMVAESDNWQGRGNRDQLARDSSEMPTT 1247
V N + WG K G K+S + +P N + + + T
Sbjct: 1404 VIENGEPSSDVWGPKAVSDKPWGKKNSETEPAPAAWGKTNSESESAAAAWGSTNKKNTGT 1463
Query: 1246 RADVWSSWDVAKVQRSNQSTQSRKESDGFSSFDNDEVQKCPI----WKTNKPEAVSFSGY 1079
+D + W + N T+S + G S N E + P W EAVS
Sbjct: 1464 ESDA-AGW--GSTNKKNPETESDAGAWG-SGAKNKETEPAPAAWGSWGKKSSEAVSGGAD 1519
Query: 1078 --EPVKSVNKPDSGWKERVGNESSWTPKKPQVESSTG---WADNSENK--------AWSA 938
K V++ +SG W + P +E+ +G W ++K AW +
Sbjct: 1520 WGNRGKRVSETESG-------AGGWASRNPSLETQSGGATWGSRDKSKFETESGGAAWGS 1572
Query: 937 KSPDSGWKENIGNNSSWTARKPEVQNS-SGWQENSEKK---------------------- 827
++ ++ E+ ++W +KPE ++ + W ++ K
Sbjct: 1573 QAKNNFESESGSGAAAWGKKKPETESGGAAWGSQAKNKSEIESGSGAAAWGTWDKKKSET 1632
Query: 826 -----IWSANLPDCGIKESQGNKSSWTA---RKPEAESSSRWQESSENKAWSARSPDSGW 671
W + ES S+W A +KPE ES + AW +++ ++
Sbjct: 1633 ESGGGAWGSQAKKNSETESGAGASTWGAWDKKKPETESGG------DGAAWGSQAKNNSE 1686
Query: 670 KRSGENKSSWSSKKPGENTSGQSENVVKDAWSAKSLESGWNQKAENQENLTWTAKKPEVD 491
SG ++W KKP + G + AW + Q +N E+ A D
Sbjct: 1687 TESGSGAAAWGKKKPETESGGGA------AWGS--------QAKKNSESQLGAANWGSKD 1732
Query: 490 SLPGGNESEGQAW-ETRTTEAK-SSPGWN---------------ESGGNPWVT-KTPEVG 365
+ N S+ AW + + +EA+ +S W E GNPWV+ K G
Sbjct: 1733 TNNSENGSDSAAWGKKKNSEAEPTSVAWGSWGQPSPPASDKDAQEDDGNPWVSLKATNSG 1792
Query: 364 APTG-----WGVKGKQ--GWKSQVWGSSSFNDRKGPKNNSPRPPASGR---PEDRGGWRR 215
G WGV K+ SQ G D K +N PR P S P +R
Sbjct: 1793 EKEGNETSQWGVPNKRYPSAGSQSQGGGGGADWK--RNRPPRTPGSESIMGPMFTATRQR 1850
Query: 214 AEAFSTEEEKILVDIEPIMNSIRKILRES--SDGNRVSPEDQKFITENVFEFHPDKQSKV 41
+ F++EE+++L D++P+M +RKI+ +S +DG +S ED+ ++ E + +HP+K +K+
Sbjct: 1851 VDMFTSEEQELLSDVDPVMRRLRKIMHQSGYTDGEPISDEDKTYVLEQILNYHPEKDAKL 1910
Query: 40 ADQMDYIMVDKH 5
+D+I VDKH
Sbjct: 1911 GPGLDFITVDKH 1922
>ref|XP_013734544.1| PREDICTED: DNA-directed RNA polymerase V subunit 1-like isoform X3
[Brassica napus]
Length = 2059
Score = 153 bits (387), Expect = 4e-34
Identities = 153/612 (25%), Positives = 249/612 (40%), Gaps = 87/612 (14%)
Frame = -1
Query: 1579 WGSKEKICAENGNKSSW--EKVSPTAVESESWQAWGSKAKPSADNG--NKSRWERASPAV 1412
WG I E+ + S W +K + A ++SW AWGSK K A+N N + +V
Sbjct: 1345 WGKAANIEKEDAS-SGWNSKKDAQEATNTDSWGAWGSKTKDDAENATPNWGTKPAQNDSV 1403
Query: 1411 VELNSQ-----WGCKQKPYADNGNKSSWEKVSPMVAESDNWQGRGNRDQLARDSSEMPTT 1247
V N + WG K G K+S + +P N + + + T
Sbjct: 1404 VIENGEPSSDVWGPKAVSDKPWGKKNSETEPAPAAWGKTNSESESAAAAWGSTNKKNTGT 1463
Query: 1246 RADVWSSWDVAKVQRSNQSTQSRKESDGFSSFDNDEVQKCPI----WKTNKPEAVSFSGY 1079
+D + W + N T+S + G S N E + P W EAVS
Sbjct: 1464 ESDA-AGW--GSTNKKNPETESDAGAWG-SGAKNKETEPAPAAWGSWGKKSSEAVSGGAD 1519
Query: 1078 --EPVKSVNKPDSGWKERVGNESSWTPKKPQVESSTG---WADNSENK--------AWSA 938
K V++ +SG W + P +E+ +G W ++K AW +
Sbjct: 1520 WGNRGKRVSETESG-------AGGWASRNPSLETQSGGATWGSRDKSKFETESGGAAWGS 1572
Query: 937 KSPDSGWKENIGNNSSWTARKPEVQNS-SGWQENSEKK-------------IWSANLPDC 800
++ ++ E+ ++W +KPE ++ + W ++ K W +
Sbjct: 1573 QAKNNFESESGSGAAAWGKKKPETESGGAAWGSQAKNKSEIESGSGAAAWGTWDKKKSET 1632
Query: 799 ----GIKESQGNKSS-------------WTARKPEAESSSRWQESSENKAWSARSPDSGW 671
G SQ K+S W +KPE ES + AW +++ ++
Sbjct: 1633 ESGGGAWGSQAKKNSETESGACASTWGAWDKKKPETESGG------DGAAWGSQAKNNSE 1686
Query: 670 KRSGENKSSWSSKKPGENTSGQSENVVKDAWSAKSLESGWNQKAENQENLTWTAKKPEVD 491
SG ++W KKP + G + AW + Q +N E+ A D
Sbjct: 1687 TESGSGAAAWGKKKPETESGGGA------AWGS--------QAKKNSESQLGAANWGSKD 1732
Query: 490 SLPGGNESEGQAW-ETRTTEAK-SSPGWN---------------ESGGNPWVT-KTPEVG 365
+ N S+ AW + + +EA+ +S W E GNPWV+ K G
Sbjct: 1733 TNNSENGSDSAAWGKKKNSEAEPTSVAWGSWGQPSPPASDKDAQEDDGNPWVSLKATNSG 1792
Query: 364 APTG-----WGVKGKQ--GWKSQVWGSSSFNDRKGPKNNSPRPPASGR---PEDRGGWRR 215
G WGV K+ SQ G D K +N PR P S P +R
Sbjct: 1793 EKEGNETSQWGVPNKRYPSAGSQSQGGGGGADWK--RNRPPRTPGSESIMGPMFTATRQR 1850
Query: 214 AEAFSTEEEKILVDIEPIMNSIRKILRES--SDGNRVSPEDQKFITENVFEFHPDKQSKV 41
+ F++EE+++L D++P+M +RKI+ +S +DG +S ED+ ++ E + +HP+K +K+
Sbjct: 1851 VDMFTSEEQELLSDVDPVMRRLRKIMHQSGYTDGEPISDEDKTYVLEQILNYHPEKDAKL 1910
Query: 40 ADQMDYIMVDKH 5
+D+I VDKH
Sbjct: 1911 GPGLDFITVDKH 1922
>gb|KHN37673.1| DNA-directed RNA polymerase E subunit 1 [Glycine soja]
Length = 2044
Score = 153 bits (386), Expect = 5e-34
Identities = 155/586 (26%), Positives = 249/586 (42%), Gaps = 61/586 (10%)
Frame = -1
Query: 1579 WGSKE--------KICAENGNKSSWEKVSPTA----VESESWQAWGSK--------AKPS 1460
WGS + K E+ +KS+ S TA +S W AWGS +K
Sbjct: 1423 WGSNKSEIPACGSKAVQEDSSKSNTWNTSTTADQTKTKSNEWSAWGSNKSEIPAGGSKAV 1482
Query: 1459 ADNGNKSRWERASPAVVELN------SQWGCKQKPYADNGNKSSWEKVSPM--------- 1325
++ +KS S V + S W + G+K+ E S
Sbjct: 1483 QEDSSKSNAWNTSTTVDQTKTKSNEWSAWESNKSEIPAGGSKAVQEDSSKAWNTSTTADQ 1542
Query: 1324 -VAESDNWQGR-GNRDQLARDSSEMPTTRADVWSSWDVAKVQRSNQSTQSRKESDGFSS- 1154
+S+ W R N+ ++ S+ + D +W+ S + Q++ +S+ +S+
Sbjct: 1543 TKTKSNEWSARVSNKSEIPAGGSK--AVQEDSSKAWNT-----STTADQTKTKSNEWSAR 1595
Query: 1153 -FDNDEVQKCPIWKTNKPEAVSFSGYEPVKSVNKPDSGWKERVGNES---SWTPKKPQVE 986
+ E+ + + +++ + W RV N+S + K Q +
Sbjct: 1596 VSNKSEIPAGGSKAVQEDSSKAWNTSTTADQTKTKSNEWSARVSNKSEIPAGGSKAVQED 1655
Query: 985 SSTGW-----ADNSENKAWSA--KSPDSGWKENIGNNSSWTARKPEVQNSSGWQENSEKK 827
SS W AD +++ WS K D ++N+ ++ RK +V ++NS
Sbjct: 1656 SSKAWNTSTTADQTKSNEWSGWGKKKDVTQEDNVQHSWGSGKRKDKVTQ----EDNSGSG 1711
Query: 826 IWSANLPDCGIKESQGNKSSWTARKPEAESSSRWQESSENKAWS------ARSPDSGWKR 665
W AN D I +S SSW K E + + +N +W + +SG
Sbjct: 1712 DWGANRTDLAITKSS-EWSSWGKNKTEIPAGG--SANVQNDSWGLGKLNDTQKDNSGCGA 1768
Query: 664 SGENKSSWSSKKPGENTSGQSENVVKDAWSAKSLESGWNQKAENQE-NLTWTAKKPEVDS 488
GEN S + E G SE +DAW++ N KAE++ N +W K
Sbjct: 1769 WGENSGSAWVRNKAETIDGGSEKPQEDAWNSG------NWKAESKVGNTSWGKPK----- 1817
Query: 487 LPGGNESEGQAWET--RTTEAKSSPGWNESGGNPWVTKTPEVGAPTGWGVKGKQGWKSQV 314
SE AW++ ++ + SS GW + E G WG KG+ +K
Sbjct: 1818 -----SSESHAWDSHNQSNQNSSSQGWESHIAS--ANSENEKGFQ--WG-KGRDSFKKNR 1867
Query: 313 W-GSSSFNDRKGPKNNSPRPPASGRPEDRGGWRRAEAFSTEEEKILVDIEPIMNSIRKIL 137
+ GS G N RPP R +R + +S+EE+ +L DIEPIM SIR+I+
Sbjct: 1868 FEGSQGRGSNAGDWKNRNRPP-------RAPGQRLDIYSSEEQDVLKDIEPIMQSIRRIM 1920
Query: 136 RES--SDGNRVSPEDQKFITENVFEFHPDKQSKVADQMDYIMVDKH 5
++ SDG+ ++ EDQ F+ ENVFE HPDK++K+ +DY+MV+KH
Sbjct: 1921 QQQGYSDGDPLAAEDQLFVLENVFEHHPDKETKMGAGIDYVMVNKH 1966
Score = 77.0 bits (188), Expect = 4e-11
Identities = 86/376 (22%), Positives = 156/376 (41%), Gaps = 13/376 (3%)
Frame = -1
Query: 1300 GRGNRDQLARDSSEMPTTRADVWSSWDVAKVQRSNQSTQSRKESDGFSSFDNDEVQKCPI 1121
G G++ + DSSE+ + + + + +S T +E+D D D++ +
Sbjct: 1222 GTGSKFDIVWDSSEIKSNEIEGMDVYSFLHMVKS--VTNGEEETDACLGEDIDDLLE--- 1276
Query: 1120 WKTNKPEAVSFSGYEPVKSVNKPDSGWKERVGNESSWTPKKPQVESSTGWADNSENKAWS 941
E G P + +SG+ E V E+ P+ +S GW D S N+ S
Sbjct: 1277 ------EEYMDLGMSP-----QHNSGF-EAVFEEN---PEVLNGSTSNGW-DVSSNQTQS 1320
Query: 940 AKSPDSGWKENIGNNSSWTARKPEVQNSSGWQENSEKKIWSANLPDCGIKESQGNKSSWT 761
+ SGW + + S TA++ + +++S+ W+ + K S+W
Sbjct: 1321 KTNEWSGWASSNKDGRSETAQENSWGKTVNQEDSSKSNAWNTSTTSNQTKTKSNEWSAWG 1380
Query: 760 ARK---PEAESSSRWQESSENKAWSARSPDSGWKRSGENKSSWSSKKPGENTSG----QS 602
+ K P S + ++SS++ AW+ + + K + S+W S K G Q
Sbjct: 1381 SNKSEIPAGGSKAVQEDSSKSNAWNTSTTSNQTKTKSKEWSAWGSNKSEIPACGSKAVQE 1440
Query: 601 ENVVKDAWSAKSLESGWNQKAENQENLTWTAKKPEVDSLPGGNE------SEGQAWETRT 440
++ + W+ + K ++ E W + K E+ + GG++ S+ AW T T
Sbjct: 1441 DSSKSNTWNTSTTAD--QTKTKSNEWSAWGSNKSEIPA--GGSKAVQEDSSKSNAWNTST 1496
Query: 439 TEAKSSPGWNESGGNPWVTKTPEVGAPTGWGVKGKQGWKSQVWGSSSFNDRKGPKNNSPR 260
T ++ NE + W + E+ P G G K Q S+ W +S+ D+ K+N
Sbjct: 1497 TVDQTKTKSNE--WSAWESNKSEI--PAG-GSKAVQEDSSKAWNTSTTADQTKTKSNEWS 1551
Query: 259 PPASGRPEDRGGWRRA 212
S + E G +A
Sbjct: 1552 ARVSNKSEIPAGGSKA 1567