BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Ophiopogon21_contig00008516
         (2264 letters)

Database: ./nr 
           77,306,371 sequences; 28,104,191,420 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_008798769.1| PREDICTED: DNA-directed RNA polymerase I sub...   815   0.0  
ref|XP_010922210.1| PREDICTED: DNA-directed RNA polymerase I sub...   807   0.0  
gb|AIO05696.1| putative RNA polymerase AI large subunit, partial...   803   0.0  
ref|XP_009407703.1| PREDICTED: DNA-directed RNA polymerase I sub...   781   0.0  
ref|XP_009394527.1| PREDICTED: DNA-directed RNA polymerase I sub...   767   0.0  
ref|XP_010251904.1| PREDICTED: DNA-directed RNA polymerase I sub...   664   0.0  
gb|KQL11441.1| hypothetical protein SETIT_005673mg [Setaria ital...   662   0.0  
ref|XP_012700994.1| PREDICTED: DNA-directed RNA polymerase I sub...   662   0.0  
ref|XP_010653802.1| PREDICTED: DNA-directed RNA polymerase I sub...   659   0.0  
emb|CBI29879.3| unnamed protein product [Vitis vinifera]              659   0.0  
ref|XP_008655367.1| PREDICTED: DNA-directed RNA polymerase I sub...   656   0.0  
ref|XP_006656244.1| PREDICTED: DNA-directed RNA polymerase I sub...   636   e-179
ref|XP_008655376.1| PREDICTED: DNA-directed RNA polymerase I sub...   618   e-174
ref|XP_008655373.1| PREDICTED: DNA-directed RNA polymerase I sub...   618   e-174
ref|XP_008655371.1| PREDICTED: DNA-directed RNA polymerase I sub...   618   e-174
ref|XP_010238655.1| PREDICTED: DNA-directed RNA polymerase I sub...   610   e-171
ref|XP_002526734.1| DNA-directed RNA polymerase I largest subuni...   602   e-169
ref|XP_010666878.1| PREDICTED: DNA-directed RNA polymerase I sub...   600   e-168
ref|XP_010673196.1| PREDICTED: DNA-directed RNA polymerase I sub...   598   e-168
gb|KNA08287.1| hypothetical protein SOVF_163960 [Spinacia oleracea]   597   e-167

>ref|XP_008798769.1| PREDICTED: DNA-directed RNA polymerase I subunit rpa1 [Phoenix
            dactylifera]
          Length = 1665

 Score =  815 bits (2105), Expect = 0.0
 Identities = 452/775 (58%), Positives = 522/775 (67%), Gaps = 21/775 (2%)
 Frame = -2

Query: 2263 VHELYGADTAGRLLSIFSRLFTTFLQMHAFTCGVDDLLLKGESDMDREAMLEKSEAQSED 2084
            +HELYGADTAG LLS+FSRLFT FLQMH FTCGVDDLLL   SDM+R+ +LEKSEA SED
Sbjct: 785  IHELYGADTAGILLSVFSRLFTLFLQMHGFTCGVDDLLLDQSSDMERKRILEKSEALSED 844

Query: 2083 VHCRFTGAKCGNIDPLDLRKEIEKVLRNNGESATARLDRMMSNALNVLTSEVNKALFPAG 1904
            VH RFT  K G+ DP+ L++EIEKVL  N ESAT  LDRMMS+++NVLTSEVN+ LFP+G
Sbjct: 845  VHIRFTAFKDGDRDPMKLQREIEKVLCRNRESATTLLDRMMSSSMNVLTSEVNQTLFPSG 904

Query: 1903 LQKPFPGNCLSLMTTTGAKGGLVNLTQISSLLGQQELEGKRVPRMISGKTLPCFPPWDTS 1724
            LQKPF  NCLSLMTTTGAKGGLVN+TQISSLLGQQELEGKRVPRM+SGKTLPCFPPWD S
Sbjct: 905  LQKPFLRNCLSLMTTTGAKGGLVNMTQISSLLGQQELEGKRVPRMVSGKTLPCFPPWDVS 964

Query: 1723 CRAGGFIGDRFLTALRPQEYYFHCMAGRDGLVDTAIKTARSGYLQRCLIKNLESLKVCYD 1544
            CRAGGFI DRFLT LRPQEYYFHCMAGRDGLVDTA+KT+RSGYLQRCL+KNLE LKV YD
Sbjct: 965  CRAGGFISDRFLTGLRPQEYYFHCMAGRDGLVDTAVKTSRSGYLQRCLVKNLECLKVSYD 1024

Query: 1543 YTVRDADGSVVQFAYGEDGVDVLKTSYIAEAQVLFNNQRVVLESLGSQLGDAHLSKSNRF 1364
            +TVRDADGSV+QF YGEDGVDVLKTS+I+E   L  NQ VVL+ L SQL DAHLSKSN +
Sbjct: 1025 HTVRDADGSVIQFMYGEDGVDVLKTSFISELGALAANQTVVLDRLSSQLEDAHLSKSNGY 1084

Query: 1363 IKELPDSLREIATSLACQLTHLPKNERGHRHQIXXXXXXXXXXXXXXXXLAEPGEPVGVI 1184
            IKELP  LRE AT+ A     L KN +G  HQI                LAEPGEPVGVI
Sbjct: 1085 IKELPYLLRENATTFA----RLSKNHQGSLHQIKRKDLMKLMKLKYLSSLAEPGEPVGVI 1140

Query: 1183 AAQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILMSAKEAIRTPVMTCPLLDGMTK 1004
            AAQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILM+A   IRTPVMTCPL DG T+
Sbjct: 1141 AAQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILMTASVDIRTPVMTCPLHDGRTR 1200

Query: 1003 EEGEGLAARLRRICVADIVESMVVSTLPFYIHRRGTSSTLYKLNMKLFPPGLYPPHTDVS 824
            E+ E LA++LRR+C+ADIVESM V ++PF IH     ST+YKL M L+PP LYPPH+ ++
Sbjct: 1201 EDAERLASKLRRVCLADIVESMEVCSVPFCIHGNEV-STIYKLKMNLYPPELYPPHSSLT 1259

Query: 823  LEDCRSILSTTFVDAMDVAIARHLDLISKISDIDVVS---XXXXXXXXXXXXXGSKSASG 653
            LEDC   L T F+ AM+ AIA+HLD+I KISDI  V+                GSKS  G
Sbjct: 1260 LEDCMITLRTDFIGAMEDAIAKHLDMICKISDISSVTAKEESNLAEGTDEDEHGSKSTHG 1319

Query: 652  EDNDTXXXXXXXXXXXXXXXXXXXXXXXXXXXXGQKRKNQTRXXXXXXXXXEKKISVELD 473
            ED D                              +KRK +           EK+ S + D
Sbjct: 1320 EDKDN--------SSGFDGVDDDDGINEDEGMDAEKRKKRASDEMEYEDGIEKESSAKAD 1371

Query: 472  D---ETQSGFXXXXXXXXXXXXXXXEVRGDDVDAAADEQPPKDDPGSVADEEXXXXXXXX 302
            +   ETQSGF                   +D     D     +DP    +EE        
Sbjct: 1372 EHDGETQSGFESEIDQVE---------ADEDYTVGGDHSMEVEDPSLEVEEEIPESPSKA 1422

Query: 301  XXXXXTKVSKTRAKTKSKTEAKFSQN---------------FVEAKGLNFEAHFLLTDQP 167
                  +  K + K     E+K   N               FV+AKGLNFE H++   +P
Sbjct: 1423 EPTPTLEDGKKQQKLADSKESKSESNKTTTKPRKKKINRTIFVDAKGLNFEVHYIFKKEP 1482

Query: 166  HILLAEIAQATAKRVYFRECKDIDRCSVVEPKRSTDRVALQTAGVNFMAFWDLQD 2
             ILLAE+AQ  AK VY +E K+I+ CSV EPK+  + ++LQTAGVNF AFWDL+D
Sbjct: 1483 RILLAEVAQKAAKSVYVKESKNIELCSVTEPKKD-EPLSLQTAGVNFQAFWDLED 1536


>ref|XP_010922210.1| PREDICTED: DNA-directed RNA polymerase I subunit rpa1 [Elaeis
            guineensis]
          Length = 1674

 Score =  807 bits (2085), Expect = 0.0
 Identities = 454/769 (59%), Positives = 524/769 (68%), Gaps = 15/769 (1%)
 Frame = -2

Query: 2263 VHELYGADTAGRLLSIFSRLFTTFLQMHAFTCGVDDLLLKGESDMDREAMLEKSEAQSED 2084
            VHELYGADTAG LLS+FSRLFT FLQMH FTCGVDDLLL   SDM+R+ +LEKSEA SED
Sbjct: 795  VHELYGADTAGILLSVFSRLFTLFLQMHGFTCGVDDLLLDQSSDMERKRILEKSEALSED 854

Query: 2083 VHCRFTGAKCGNIDPLDLRKEIEKVLRNNGESATARLDRMMSNALNVLTSEVNKALFPAG 1904
            VH RFT  K G+ DP+ L++EIEK L  N ESATA LDRMMS+++NVLTSEVN+ LFP+G
Sbjct: 855  VHIRFTAFKDGDRDPVKLQREIEKTLCRNRESATASLDRMMSSSMNVLTSEVNQTLFPSG 914

Query: 1903 LQKPFPGNCLSLMTTTGAKGGLVNLTQISSLLGQQELEGKRVPRMISGKTLPCFPPWDTS 1724
            LQKPF  NCLSLMTTTGAKGGLVN+TQISSLLGQQELEGKRVPRM+SGKTLPCFPPWD S
Sbjct: 915  LQKPFLRNCLSLMTTTGAKGGLVNMTQISSLLGQQELEGKRVPRMVSGKTLPCFPPWDIS 974

Query: 1723 CRAGGFIGDRFLTALRPQEYYFHCMAGRDGLVDTAIKTARSGYLQRCLIKNLESLKVCYD 1544
            CRAGGFI DRFLT LRPQEYYFHCMAGRDGLVDTA+KT+RSGYLQRCL+KNLE LKV YD
Sbjct: 975  CRAGGFISDRFLTGLRPQEYYFHCMAGRDGLVDTAVKTSRSGYLQRCLVKNLECLKVSYD 1034

Query: 1543 YTVRDADGSVVQFAYGEDGVDVLKTSYIAEAQVLFNNQRVVLESLGSQLGDAHLSKSNRF 1364
            +TVRDADGSV+QF YGEDGVDVLKTS+I+E   L  NQ VVL+ L SQL DAHLSKSN +
Sbjct: 1035 HTVRDADGSVIQFMYGEDGVDVLKTSFISELGALAANQTVVLDRLSSQLEDAHLSKSNGY 1094

Query: 1363 IKELPDSLREIATSLACQLTHLPKNERGHRHQIXXXXXXXXXXXXXXXXLAEPGEPVGVI 1184
            +KELP  LRE AT+ A     L KN +G   QI                LAEPGEPVGVI
Sbjct: 1095 LKELPYLLRENATTFA----RLSKNHQGSLRQIRRKDLMKLMKLKYLSSLAEPGEPVGVI 1150

Query: 1183 AAQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILMSAKEAIRTPVMTCPLLDGMTK 1004
            AAQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILM+A   IRTPVM CPL DG T+
Sbjct: 1151 AAQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILMTASADIRTPVMKCPLHDGRTR 1210

Query: 1003 EEGEGLAARLRRICVADIVESMVVSTLPFYIHRRGTSSTLYKLNMKLFPPGLYPPHTDVS 824
            E  E LA++LRR+C+ADIVESM V ++PF IH     ST+YKL M L+PP LYPPH+D++
Sbjct: 1211 EAAEQLASKLRRVCLADIVESMEVCSVPFCIHGNEV-STIYKLRMNLYPPELYPPHSDLT 1269

Query: 823  LEDCRSILSTTFVDAMDVAIARHLDLISKISDIDVVS---XXXXXXXXXXXXXGSKSASG 653
            LEDC + L T F+DAM+ AIA+HLD+I KISDI+ V+                GSKS   
Sbjct: 1270 LEDCMTTLRTYFIDAMEDAIAKHLDMICKISDINSVTAKGESNLEEGTDEDEHGSKSTHR 1329

Query: 652  EDNDTXXXXXXXXXXXXXXXXXXXXXXXXXXXXGQKRKNQTRXXXXXXXXXEKKISVELD 473
            ED D                              +KRK +           EK+ S + D
Sbjct: 1330 EDKDN--------SRGFDDVDDDDGINEDEGMDAEKRKKRASDEMEYEDGIEKENSAKAD 1381

Query: 472  D---ETQSGFXXXXXXXXXXXXXXXEVRGD------DVDAAADEQPPKDDPGSVADEEXX 320
            +   ETQSGF                V GD      D    A+E P  + P         
Sbjct: 1382 EHDGETQSGF--ESEIDQVEADEDYTVGGDPSMEVEDPSLEAEETP--ESPSKAEPTPTL 1437

Query: 319  XXXXXXXXXXXTKVSKTRAKTKSKTEAKFSQN---FVEAKGLNFEAHFLLTDQPHILLAE 149
                        K SK+ +K K+    K   N   FV+AKGL FE H++   +P ILLAE
Sbjct: 1438 EDGKKKQKLADNKESKSESKKKTTKPRKKKINRTIFVDAKGLTFEVHYIFKKEPRILLAE 1497

Query: 148  IAQATAKRVYFRECKDIDRCSVVEPKRSTDRVALQTAGVNFMAFWDLQD 2
            +AQ  AK VY +E K+I+ CSV EPK+  + ++LQTAGVNF AFWDL+D
Sbjct: 1498 VAQKAAKSVYVKESKNIELCSVPEPKKD-EPLSLQTAGVNFQAFWDLED 1545


>gb|AIO05696.1| putative RNA polymerase AI large subunit, partial [Cocos nucifera]
          Length = 1669

 Score =  803 bits (2074), Expect = 0.0
 Identities = 449/767 (58%), Positives = 524/767 (68%), Gaps = 13/767 (1%)
 Frame = -2

Query: 2263 VHELYGADTAGRLLSIFSRLFTTFLQMHAFTCGVDDLLLKGESDMDREAMLEKSEAQSED 2084
            VHELYGADTAG LLS+FSRLFT FLQMH FTCGVDDLLL   SDM+R+ +LEKSEA SED
Sbjct: 792  VHELYGADTAGILLSVFSRLFTLFLQMHGFTCGVDDLLLDQSSDMERKRILEKSEALSED 851

Query: 2083 VHCRFTGAKCGNIDPLDLRKEIEKVLRNNGESATARLDRMMSNALNVLTSEVNKALFPAG 1904
            VH RFT  K G+ DP+ L+ EIE + RN  ESAT  LDRMMS+++NVLTSEVN+ LFP+G
Sbjct: 852  VHIRFTAFKDGDRDPVKLQMEIEVLCRNR-ESATTLLDRMMSSSMNVLTSEVNQTLFPSG 910

Query: 1903 LQKPFPGNCLSLMTTTGAKGGLVNLTQISSLLGQQELEGKRVPRMISGKTLPCFPPWDTS 1724
            LQKPF  NCLSLMTTTGAKGGLVN+TQISSLLGQQELEGKRVPRM+SGKTLPCFPPWD S
Sbjct: 911  LQKPFLRNCLSLMTTTGAKGGLVNMTQISSLLGQQELEGKRVPRMVSGKTLPCFPPWDIS 970

Query: 1723 CRAGGFIGDRFLTALRPQEYYFHCMAGRDGLVDTAIKTARSGYLQRCLIKNLESLKVCYD 1544
            CRAGGFI DRFL+ LRPQEYYFHCMAGRDGLVDTA+KT+RSGYLQRCL+KNLE LKV YD
Sbjct: 971  CRAGGFISDRFLSGLRPQEYYFHCMAGRDGLVDTAVKTSRSGYLQRCLVKNLECLKVSYD 1030

Query: 1543 YTVRDADGSVVQFAYGEDGVDVLKTSYIAEAQVLFNNQRVVLESLGSQLGDAHLSKSNRF 1364
            +TVRDADGSV+QF YGEDGVDVLKTS+I+E   L  NQ VVL+ L SQL DAHLSKSN +
Sbjct: 1031 HTVRDADGSVIQFMYGEDGVDVLKTSFISELGALAANQTVVLDRLSSQLEDAHLSKSNGY 1090

Query: 1363 IKELPDSLREIATSLACQLTHLPKNERGHRHQIXXXXXXXXXXXXXXXXLAEPGEPVGVI 1184
            IKELP  LRE AT+ A     L KN +G  HQI                LAEPGEPVGVI
Sbjct: 1091 IKELPYLLRENATTFA----RLSKNHQGSLHQIRRRDLMKLMKLKYMSSLAEPGEPVGVI 1146

Query: 1183 AAQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILMSAKEAIRTPVMTCPLLDGMTK 1004
            AAQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILM+A   IRTPVM CPL DG T+
Sbjct: 1147 AAQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILMTASADIRTPVMKCPLHDGRTR 1206

Query: 1003 EEGEGLAARLRRICVADIVESMVVSTLPFYIHRRGTSSTLYKLNMKLFPPGLYPPHTDVS 824
            E+ E LA++LRR+C+ADIVESM V ++PF IH     ST+YKL M L+PP LYP H+D++
Sbjct: 1207 EDAERLASKLRRVCLADIVESMEVCSVPFCIHGNEV-STIYKLRMNLYPPELYPQHSDLT 1265

Query: 823  LEDCRSILSTTFVDAMDVAIARHLDLISKISDIDVVS---XXXXXXXXXXXXXGSKSASG 653
            LEDC + L T F+D M+ AIA+HLD+I KISDI+ V+                GSKS  G
Sbjct: 1266 LEDCMTTLRTNFIDDMEDAIAKHLDMICKISDINSVTAKGESNLAEGTDEGEHGSKSTHG 1325

Query: 652  EDNDTXXXXXXXXXXXXXXXXXXXXXXXXXXXXGQKRKNQTRXXXXXXXXXEKKISVELD 473
            ED D                              +KRK +           EK+ S + D
Sbjct: 1326 EDKDN--------SRGFDDVDDDDGINEDEGMDAEKRKQRASDEMEYEDGIEKESSAKAD 1377

Query: 472  D---ETQSGFXXXXXXXXXXXXXXXEVRGDD----VDAAADEQPPKDDPGSVADEEXXXX 314
            +   +TQSGF                V GD      D + + +   + P           
Sbjct: 1378 EHDGDTQSGF--ESEIDQVEADEDYTVGGDPSMEVEDPSLEVEETPESPSKAEPTPTLED 1435

Query: 313  XXXXXXXXXTKVSKTRAKTKSKTEAKFSQN---FVEAKGLNFEAHFLLTDQPHILLAEIA 143
                     +K SK+ +K K     K   N   FV+AKGL FE H++  ++P ILLAE+A
Sbjct: 1436 GKKKQKLADSKESKSESKKKKTKSRKKKINRTIFVDAKGLKFEVHYIFKEEPRILLAEVA 1495

Query: 142  QATAKRVYFRECKDIDRCSVVEPKRSTDRVALQTAGVNFMAFWDLQD 2
            Q TAK VY R+ K+I+ CSV EPK+  + ++LQTAGVNF AFWDL+D
Sbjct: 1496 QKTAKSVYVRDSKNIELCSVAEPKKD-EPLSLQTAGVNFQAFWDLED 1541


>ref|XP_009407703.1| PREDICTED: DNA-directed RNA polymerase I subunit rpa1-like [Musa
            acuminata subsp. malaccensis]
          Length = 1640

 Score =  781 bits (2017), Expect = 0.0
 Identities = 431/763 (56%), Positives = 521/763 (68%), Gaps = 9/763 (1%)
 Frame = -2

Query: 2263 VHELYGADTAGRLLSIFSRLFTTFLQMHAFTCGVDDLLLKGESDMDREAMLEKSEAQSED 2084
            VHELYG D AG LLS+FSRLFT+FLQMH FTCGVDDLLL  +SDM+R+ +LEKSE Q+E+
Sbjct: 773  VHELYGPDVAGMLLSVFSRLFTSFLQMHGFTCGVDDLLLSQKSDMERKKILEKSETQAEE 832

Query: 2083 VHCRFTGAKCGNIDPLDLRKEIEKVLRNNGESATARLDRMMSNALNVLTSEVNKALFPAG 1904
            VH RFT  K G+ DP++L++EIEKVLR NG+SATA LDRMMSN+LN LTSE+N+ LFP G
Sbjct: 833  VHMRFTRTKDGDGDPMELQREIEKVLRGNGDSATALLDRMMSNSLNSLTSEINQTLFPNG 892

Query: 1903 LQKPFPGNCLSLMTTTGAKGGLVNLTQISSLLGQQELEGKRVPRMISGKTLPCFPPWDTS 1724
            L KPF  NCLSLMTTTGAKGGLVN+TQISSLLGQQELEGKRVPRM+SGKTLPCFPPWD S
Sbjct: 893  LSKPFLKNCLSLMTTTGAKGGLVNMTQISSLLGQQELEGKRVPRMVSGKTLPCFPPWDIS 952

Query: 1723 CRAGGFIGDRFLTALRPQEYYFHCMAGRDGLVDTAIKTARSGYLQRCLIKNLESLKVCYD 1544
             R+GGFI DRFLT LRPQEYYFHCMAGRDGLVDTAIKT+RSGYLQRCLIKNLE LKV YD
Sbjct: 953  SRSGGFISDRFLTGLRPQEYYFHCMAGRDGLVDTAIKTSRSGYLQRCLIKNLECLKVSYD 1012

Query: 1543 YTVRDADGSVVQFAYGEDGVDVLKTSYIAEAQVLFNNQRVVLESLGSQLGDAHLSKSNRF 1364
            +TVRDADGSVVQF YGEDGVDVLKTSYI+E ++L +N+ VVL+    Q+ D  L+KSN +
Sbjct: 1013 HTVRDADGSVVQFIYGEDGVDVLKTSYISEFKMLSDNRNVVLQKFSDQIVDTSLAKSNAY 1072

Query: 1363 IKELPDSLREIATSLACQLTHLPKNERGHRHQIXXXXXXXXXXXXXXXXLAEPGEPVGVI 1184
            I+ELP SLR+ AT          K ++   HQI                LAEPGE VGV+
Sbjct: 1073 IRELPCSLRDNATDFVL------KKQKSSPHQINKKDFMKLMKLKYLSSLAEPGEAVGVV 1126

Query: 1183 AAQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILMSAKEAIRTPVMTCPLLDGMTK 1004
            AAQSVGEPSTQMTLNTFHLAG+G+MNVTLGIPRLQEILM+A + IRTP+M CPL    TK
Sbjct: 1127 AAQSVGEPSTQMTLNTFHLAGKGDMNVTLGIPRLQEILMTASKDIRTPLMNCPLHAWKTK 1186

Query: 1003 EEGEGLAARLRRICVADIVESMVVSTLPFYIHRRGTSSTLYKLNMKLFPPGLYPPHTDVS 824
            ++ E LAA+LRR+ VAD+VE M V T+PF IH R   ST+YKL M L+P  LYP  ++++
Sbjct: 1187 DDAERLAAKLRRVSVADVVERMEVCTVPFSIH-RNQISTIYKLKMTLYPSELYPSFSELT 1245

Query: 823  LEDCRSILSTTFVDAMDVAIARHLDLISKISDIDVVS---XXXXXXXXXXXXXGSKSASG 653
            LEDCR +L  TFV+AM+ AIA+H+D ISKISDI VVS                 +KS+  
Sbjct: 1246 LEDCREVLEMTFVEAMEDAIAKHVDTISKISDIKVVSGKEENDFEEGVDEDESRNKSSME 1305

Query: 652  EDNDTXXXXXXXXXXXXXXXXXXXXXXXXXXXXGQKRKNQTRXXXXXXXXXEKKISV--- 482
            E+ D                              ++RK Q           EK+  V   
Sbjct: 1306 ENAD--------------GGDEDDESGDDQGIDYKRRKQQANDEVEYDDGIEKESFVAAG 1351

Query: 481  ELDDETQSGF--XXXXXXXXXXXXXXXEVRGDDVDAAADEQPPKDDPGSVADEEXXXXXX 308
            E D+ETQSGF                    G D+D A  E P K D   +++++      
Sbjct: 1352 EHDEETQSGFESEIDHLEADEDYLMGGGSPGVDMDLATPESPSKADSTPISEDD---KKK 1408

Query: 307  XXXXXXXTKVSKTRAKTKSKTEAKFSQN-FVEAKGLNFEAHFLLTDQPHILLAEIAQATA 131
                    K +K++AK   +++ K  +  +V A+GL FE H++   +P ILLAEIAQ TA
Sbjct: 1409 SKSVEKGKKETKSKAKKPKRSKKKIRRTIYVMAEGLKFEVHYIFRSEPRILLAEIAQRTA 1468

Query: 130  KRVYFRECKDIDRCSVVEPKRSTDRVALQTAGVNFMAFWDLQD 2
            KRVY +E K+I+RCS+ E K+STD   LQ AGVNF   WDL++
Sbjct: 1469 KRVYVKEYKNIERCSLKENKKSTDPFMLQIAGVNFKTLWDLEE 1511


>ref|XP_009394527.1| PREDICTED: DNA-directed RNA polymerase I subunit rpa1-like [Musa
            acuminata subsp. malaccensis]
          Length = 1641

 Score =  767 bits (1981), Expect = 0.0
 Identities = 421/761 (55%), Positives = 511/761 (67%), Gaps = 7/761 (0%)
 Frame = -2

Query: 2263 VHELYGADTAGRLLSIFSRLFTTFLQMHAFTCGVDDLLLKGESDMDREAMLEKSEAQSED 2084
            VHELYG D AG LLS+FSRLFT+FLQ+H FTCGVDDLLL  +SD++RE +L+KSE QS +
Sbjct: 769  VHELYGPDVAGTLLSVFSRLFTSFLQIHGFTCGVDDLLLSQKSDIERERILKKSEIQSGE 828

Query: 2083 VHCRFTGAKCGNIDPLDLRKEIEKVLRNNGESATARLDRMMSNALNVLTSEVNKALFPAG 1904
            VH RFT  K G+ DP+ L++EIEKVLR NG+SATA LDRMMSN+LN LTSE+N+ LFP G
Sbjct: 829  VHMRFTRTKDGDGDPMKLQREIEKVLRGNGDSATALLDRMMSNSLNSLTSEINQTLFPNG 888

Query: 1903 LQKPFPGNCLSLMTTTGAKGGLVNLTQISSLLGQQELEGKRVPRMISGKTLPCFPPWDTS 1724
            L KPF  NCLSLMTTTGAKGGLVN+TQISSLLGQQELEGKRVPRM+SGKTLPCFPPWD S
Sbjct: 889  LLKPFLKNCLSLMTTTGAKGGLVNMTQISSLLGQQELEGKRVPRMVSGKTLPCFPPWDIS 948

Query: 1723 CRAGGFIGDRFLTALRPQEYYFHCMAGRDGLVDTAIKTARSGYLQRCLIKNLESLKVCYD 1544
             RAGGFI DRFLT LRPQEYYFHCMAGRDGLVDTAIKT+RSGYLQRC+IKNLE LKV YD
Sbjct: 949  SRAGGFISDRFLTGLRPQEYYFHCMAGRDGLVDTAIKTSRSGYLQRCIIKNLECLKVSYD 1008

Query: 1543 YTVRDADGSVVQFAYGEDGVDVLKTSYIAEAQVLFNNQRVVLESLGSQLGDAHLSKSNRF 1364
            +TVRDADGSV+QF YGEDG+DVLK S+I+E ++L +NQ+VVL+    Q+ D  L+KSN +
Sbjct: 1009 HTVRDADGSVIQFIYGEDGIDVLKASHISEFKMLLDNQKVVLQKFSDQISDTSLAKSNAY 1068

Query: 1363 IKELPDSLREIATSLACQLTHLPKNERGHRHQIXXXXXXXXXXXXXXXXLAEPGEPVGVI 1184
            I+ELP SLR+ AT        + KN++   HQI                LAEPGE VGV+
Sbjct: 1069 IRELPCSLRDKATDF------ILKNQKSFPHQINQKDFMKLMKLKYLSSLAEPGEAVGVV 1122

Query: 1183 AAQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILMSAKEAIRTPVMTCPLLDGMTK 1004
            AAQSVGEPSTQMTLNTFHLAG+G+MNVTLGIPRLQEILM+A + IRTP+M CPL    TK
Sbjct: 1123 AAQSVGEPSTQMTLNTFHLAGKGDMNVTLGIPRLQEILMTASKDIRTPLMNCPLHVWKTK 1182

Query: 1003 EEGEGLAARLRRICVADIVESMVVSTLPFYIHRRGTSSTLYKLNMKLFPPGLYPPHTDVS 824
            ++ E LAA+LRR+ +AD+VE M V T+PF IH     ST+YKL M L+P  LYP  ++++
Sbjct: 1183 DDAERLAAKLRRVSLADVVERMEVCTVPFSIH-GNQISTIYKLKMTLYPSELYPAFSELT 1241

Query: 823  LEDCRSILSTTFVDAMDVAIARHLDLISKISDIDVVSXXXXXXXXXXXXXGSKSASGEDN 644
            LEDC+ +L TTFV+AM+ AIA+HLD+I +ISDI V S              +    G D 
Sbjct: 1242 LEDCKEVLETTFVEAMEDAIAKHLDMIFRISDIKVAS----------GKEDNDFEEGVDE 1291

Query: 643  DTXXXXXXXXXXXXXXXXXXXXXXXXXXXXGQKRKNQTRXXXXXXXXXEKKISV---ELD 473
            D                              ++RK Q           EK+  V   E D
Sbjct: 1292 DESRNKSNTVEENVDGGDEDYESLDDQGTDSRRRKQQANDEVEYDDGIEKESFVAAGEHD 1351

Query: 472  DETQSGF--XXXXXXXXXXXXXXXEVRGDDVDAAADEQPPKDDPGSVADE--EXXXXXXX 305
            +E QSGF                    G D+D A  E P K D   V+++  +       
Sbjct: 1352 EEMQSGFESEIDHVEADEDYLMGGGSPGFDMDIATPESPSKADSTPVSEDGKKKSKLTEK 1411

Query: 304  XXXXXXTKVSKTRAKTKSKTEAKFSQNFVEAKGLNFEAHFLLTDQPHILLAEIAQATAKR 125
                  +K  K   K KS  +      ++ A+GL FE H++   +P ILLAEIAQ TAKR
Sbjct: 1412 GKKETKSKADKKAKKPKSSKKKIRRTIYMMAEGLKFEVHYIFRSEPRILLAEIAQRTAKR 1471

Query: 124  VYFRECKDIDRCSVVEPKRSTDRVALQTAGVNFMAFWDLQD 2
            VY +E K+I+RCS+ E K+STD   LQ AGVNF   WDL++
Sbjct: 1472 VYVKEYKNIERCSLKENKKSTDPFMLQIAGVNFSTLWDLEE 1512


>ref|XP_010251904.1| PREDICTED: DNA-directed RNA polymerase I subunit rpa1 [Nelumbo
            nucifera]
          Length = 1676

 Score =  664 bits (1713), Expect = 0.0
 Identities = 380/764 (49%), Positives = 477/764 (62%), Gaps = 10/764 (1%)
 Frame = -2

Query: 2263 VHELYGADTAGRLLSIFSRLFTTFLQMHAFTCGVDDLLLKGESDMDREAMLEKSEAQSED 2084
            V ELYG++ AG LLS+ SRLFT FLQMH FTCG+DDLL+    D++R   L+K+E   E 
Sbjct: 811  VQELYGSNAAGVLLSVLSRLFTIFLQMHGFTCGIDDLLIVHRYDLERMKKLDKNEQIGEF 870

Query: 2083 VHCRFTGAKCGNIDPLDLRKEIEKVLRNNGESATARLDRMMSNALNVLTSEVNKALFPAG 1904
             H +F G   G+ DP+ L+ EIEK +R NG+SA  RLDR MS A+N LTSEVNK LFP G
Sbjct: 871  EHWQFVGCADGDKDPIKLQVEIEKAIRRNGDSAVTRLDRRMSGAMNKLTSEVNKNLFPEG 930

Query: 1903 LQKPFPGNCLSLMTTTGAKGGLVNLTQISSLLGQQELEGKRVPRMISGKTLPCFPPWDTS 1724
            L KPFP NCLSLMT TGAKGG+VN TQI SLLGQQELEGKRVPRM+SGKTLPCFPPWD +
Sbjct: 931  LCKPFPKNCLSLMTATGAKGGMVNSTQICSLLGQQELEGKRVPRMVSGKTLPCFPPWDPA 990

Query: 1723 CRAGGFIGDRFLTALRPQEYYFHCMAGRDGLVDTAIKTARSGYLQRCLIKNLESLKVCYD 1544
             RAGGFI DRFLT LRPQEYYFHCMAGR+GLVDTA+KT+RSGYLQRCL+KNLE LKVCYD
Sbjct: 991  SRAGGFISDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLVKNLEGLKVCYD 1050

Query: 1543 YTVRDADGSVVQFAYGEDGVDVLKTSYIAEAQVLFNNQRVVLESLGSQLGDAHLSKSNRF 1364
            YTVRDADGSVVQF YGEDG+DV KTS++ E + L  N R+V E   +QL    L K + +
Sbjct: 1051 YTVRDADGSVVQFIYGEDGIDVHKTSFLEEFEALAANHRIVQERFNNQLDSEVLFKYD-Y 1109

Query: 1363 IKELPDSLREIATSLACQLTHLPKNERGHRHQIXXXXXXXXXXXXXXXXLAEPGEPVGVI 1184
            IK+LP +L   A      +  L K +    +                  LA+PGEPVGV+
Sbjct: 1110 IKKLPVALEGKAKD---YIDTLSKKKLKSLNLRKRKDFMKLMRSKYISSLAQPGEPVGVV 1166

Query: 1183 AAQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILMSAKEAIRTPVMTCPLLDGMTK 1004
            AAQSVGEPSTQMTLNTFH AGRGEMNVTLGIPRLQEILM A E I+TPVMTCPL  G T+
Sbjct: 1167 AAQSVGEPSTQMTLNTFHHAGRGEMNVTLGIPRLQEILMRASEKIQTPVMTCPLRKGKTE 1226

Query: 1003 EEGEGLAARLRRICVADIVESMVVSTLPFYIHRRGTSSTLYKLNMKLFPPGLYPPHTDVS 824
            ++ + LAA+L+++ VAD++ESM V  +PF + ++   ST+YKL +KL+PP LYPP++ ++
Sbjct: 1227 DDAKRLAAKLQKVTVADVIESMEVGVVPFSV-KKHQVSTVYKLKLKLYPPELYPPYSGIT 1285

Query: 823  LEDCRSILSTTFVDAMDVAIARHLDLISKISDIDVV---SXXXXXXXXXXXXXGSKSASG 653
            L+DC++ L   FV  M+ AI  HL ++SKI  I  V   +              SKS + 
Sbjct: 1286 LKDCQATLKFVFVGEMEDAIQSHLLMLSKIRGITNVVHSTQSNSGDGADEDGPTSKSQAA 1345

Query: 652  EDNDTXXXXXXXXXXXXXXXXXXXXXXXXXXXXGQKRKNQTRXXXXXXXXXEKKI----S 485
            E+ND                              QKRK Q           E +I    +
Sbjct: 1346 EEND------------DAGDDDDYEAPDDLGADAQKRKRQATDEMDYEDDMENEIVNTEN 1393

Query: 484  VELDDETQSGFXXXXXXXXXXXXXXXEVRGDDVDAAADEQPPKDDPGSVADEEXXXXXXX 305
               D E  +GF               +      DA  +        G+V+  +       
Sbjct: 1394 GRSDIEASAGFESEIDQAEVEAGNIMDGEIQVFDAEDEASQTPSQHGTVSKSKSSGGKDE 1453

Query: 304  XXXXXXTKVSKTRAKTKSKTEAKFSQNFVEAKGLNFEAHFLLTDQPHILLAEIAQATAKR 125
                  T+      +TK  ++  F   F+ A+GL+FE HF  T++PHILLA+IAQ TAK 
Sbjct: 1454 ADARGMTR------RTKKDSDRAF---FMVAEGLDFEVHFRFTNEPHILLAQIAQKTAKN 1504

Query: 124  VYFRECKDIDRCSVVEPKRS---TDRVALQTAGVNFMAFWDLQD 2
            VY +   +I+ CSVV PK++    +   LQT+GV+F  FW++QD
Sbjct: 1505 VYVKRSGNIELCSVVVPKKADGEPEIPELQTSGVDFPTFWNMQD 1548


>gb|KQL11441.1| hypothetical protein SETIT_005673mg [Setaria italica]
          Length = 1667

 Score =  662 bits (1707), Expect = 0.0
 Identities = 377/773 (48%), Positives = 479/773 (61%), Gaps = 20/773 (2%)
 Frame = -2

Query: 2263 VHELYGADTAGRLLSIFSRLFTTFLQMHAFTCGVDDLLLKGESDMDREAMLEKSEAQSED 2084
            VHELYGADTAG LLS FSRLFT FLQ H FTCGVDDLLL  ++D  R +++ +S+  SE 
Sbjct: 783  VHELYGADTAGILLSTFSRLFTLFLQFHGFTCGVDDLLLCQKADEARRSIISESDKYSEK 842

Query: 2083 VHCRFTGAKCGNIDPLDLRKEIEKVLRNNGESATARLDRMMSNALNVLTSEVNKALFPAG 1904
             H  F   K G  D  +L+ E+EKV+R +GESAT  +DR +SNAL+ +TS+VNK +FP G
Sbjct: 843  AHGTFI--KTGK-DGEELQMEVEKVIRRDGESATVNMDREISNALSNITSDVNKNVFPYG 899

Query: 1903 LQKPFPGNCLSLMTTTGAKGGLVNLTQISSLLGQQELEGKRVPRMISGKTLPCFPPWDTS 1724
            LQKPFPGNCL+LMT TGAKGG VN+ QISSLLGQQELEGKRVPRM+SGKTLPCF PWDTS
Sbjct: 900  LQKPFPGNCLTLMTATGAKGGDVNMYQISSLLGQQELEGKRVPRMVSGKTLPCFLPWDTS 959

Query: 1723 CRAGGFIGDRFLTALRPQEYYFHCMAGRDGLVDTAIKTARSGYLQRCLIKNLESLKVCYD 1544
             RAGGFI DRFLT LRPQEYYFHCMAGR+GL DTA+KT+RSGYLQRCLIK LESLKV YD
Sbjct: 960  SRAGGFISDRFLTGLRPQEYYFHCMAGREGLCDTAVKTSRSGYLQRCLIKCLESLKVSYD 1019

Query: 1543 YTVRDADGSVVQFAYGEDGVDVLKTSYIAEAQVLFNNQRVVLESLGSQLGDAHLSKSNRF 1364
            +TVRD DGS+VQF YGEDGVDVLKTS++ + + L +N++VVL+ +     +  LSK N +
Sbjct: 1020 HTVRDVDGSIVQFCYGEDGVDVLKTSFLNKFKELADNKKVVLDKIKGHKQNQLLSKPNGY 1079

Query: 1363 IKELPDSLREIATSLACQLTHLPKNE--RGHRHQIXXXXXXXXXXXXXXXXLAEPGEPVG 1190
            I  LP  L   A      L     ++  +G    I                L +PGE VG
Sbjct: 1080 ITTLPKKLVAEAKEFLKLLKEKKSSDIKKGLMCDIKKKGLMKLLKVKYLYSLVDPGEAVG 1139

Query: 1189 VIAAQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILMSAKEAIRTPVMTCPLLDGM 1010
            V+AAQS+GEPSTQMTLNTFHLAGRGEMNVTLGIPRL+EILM+A   I TP+M CPLL+  
Sbjct: 1140 VVAAQSIGEPSTQMTLNTFHLAGRGEMNVTLGIPRLKEILMTASANISTPIMVCPLLEKW 1199

Query: 1009 TKEEGEGLAARLRRICVADIVESMVVSTLPFYIHRRGTSSTLYKLNMKLFPPGLYPPHTD 830
            T+++   +AA+LRR+ VADIVE + V T+PFY +  G  STLYKL MKL+P   YPP +D
Sbjct: 1200 TRDDARRVAAKLRRVRVADIVEKIEVCTVPFY-NTNGHVSTLYKLQMKLYPQKHYPPQSD 1258

Query: 829  VSLEDCRSILSTTFVDAMDVAIARHLDLISKISDIDVVSXXXXXXXXXXXXXGSKSASGE 650
            +++++C++ L T FVDAM+ AI +HLDL+ KI++I  V               S+S  G+
Sbjct: 1259 LTVDECQTTLRTVFVDAMEHAIEKHLDLLHKINEIRAVKVNDAEGSLSDGGEESESRHGD 1318

Query: 649  DNDTXXXXXXXXXXXXXXXXXXXXXXXXXXXXGQKRKNQTRXXXXXXXXXEKKISVELDD 470
              +T                             +KRK Q R         E +  ++ + 
Sbjct: 1319 GEET----------GMSDGDDENDNDDDLGTDAEKRKRQERDEMEYDDDTENEEGMDSES 1368

Query: 469  ETQSGFXXXXXXXXXXXXXXXEVRGDDVDAAADE-QPPKDDPGSVADEEXXXXXXXXXXX 293
            E ++                    GDD+  A +E +  K D  SV D             
Sbjct: 1369 EEET-------KVKHQSEEDPAESGDDLQEADEEHKTSKSDMTSVDD---MSYSAKKVKK 1418

Query: 292  XXTKVSKTRAKTKSKTEAKFSQN-----------------FVEAKGLNFEAHFLLTDQPH 164
               K    + + ++ TE K  +                   VE+K L+FE H+   D+PH
Sbjct: 1419 SKDKHETAKLQERTHTEGKSDERKQDQMTYKRKKKLKRTVHVESKDLDFEIHYAFCDEPH 1478

Query: 163  ILLAEIAQATAKRVYFRECKDIDRCSVVEPKRSTDRVALQTAGVNFMAFWDLQ 5
            ILLA+IAQ TA+ ++ R CK+ID+C V E K       L+T+GVNF  FW+L+
Sbjct: 1479 ILLAQIAQKTARSIFVRACKNIDKCEVEEKKEKGSSAVLKTSGVNFEVFWNLR 1531


>ref|XP_012700994.1| PREDICTED: DNA-directed RNA polymerase I subunit rpa1 [Setaria
            italica]
          Length = 1754

 Score =  662 bits (1707), Expect = 0.0
 Identities = 377/773 (48%), Positives = 479/773 (61%), Gaps = 20/773 (2%)
 Frame = -2

Query: 2263 VHELYGADTAGRLLSIFSRLFTTFLQMHAFTCGVDDLLLKGESDMDREAMLEKSEAQSED 2084
            VHELYGADTAG LLS FSRLFT FLQ H FTCGVDDLLL  ++D  R +++ +S+  SE 
Sbjct: 870  VHELYGADTAGILLSTFSRLFTLFLQFHGFTCGVDDLLLCQKADEARRSIISESDKYSEK 929

Query: 2083 VHCRFTGAKCGNIDPLDLRKEIEKVLRNNGESATARLDRMMSNALNVLTSEVNKALFPAG 1904
             H  F   K G  D  +L+ E+EKV+R +GESAT  +DR +SNAL+ +TS+VNK +FP G
Sbjct: 930  AHGTFI--KTGK-DGEELQMEVEKVIRRDGESATVNMDREISNALSNITSDVNKNVFPYG 986

Query: 1903 LQKPFPGNCLSLMTTTGAKGGLVNLTQISSLLGQQELEGKRVPRMISGKTLPCFPPWDTS 1724
            LQKPFPGNCL+LMT TGAKGG VN+ QISSLLGQQELEGKRVPRM+SGKTLPCF PWDTS
Sbjct: 987  LQKPFPGNCLTLMTATGAKGGDVNMYQISSLLGQQELEGKRVPRMVSGKTLPCFLPWDTS 1046

Query: 1723 CRAGGFIGDRFLTALRPQEYYFHCMAGRDGLVDTAIKTARSGYLQRCLIKNLESLKVCYD 1544
             RAGGFI DRFLT LRPQEYYFHCMAGR+GL DTA+KT+RSGYLQRCLIK LESLKV YD
Sbjct: 1047 SRAGGFISDRFLTGLRPQEYYFHCMAGREGLCDTAVKTSRSGYLQRCLIKCLESLKVSYD 1106

Query: 1543 YTVRDADGSVVQFAYGEDGVDVLKTSYIAEAQVLFNNQRVVLESLGSQLGDAHLSKSNRF 1364
            +TVRD DGS+VQF YGEDGVDVLKTS++ + + L +N++VVL+ +     +  LSK N +
Sbjct: 1107 HTVRDVDGSIVQFCYGEDGVDVLKTSFLNKFKELADNKKVVLDKIKGHKQNQLLSKPNGY 1166

Query: 1363 IKELPDSLREIATSLACQLTHLPKNE--RGHRHQIXXXXXXXXXXXXXXXXLAEPGEPVG 1190
            I  LP  L   A      L     ++  +G    I                L +PGE VG
Sbjct: 1167 ITTLPKKLVAEAKEFLKLLKEKKSSDIKKGLMCDIKKKGLMKLLKVKYLYSLVDPGEAVG 1226

Query: 1189 VIAAQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILMSAKEAIRTPVMTCPLLDGM 1010
            V+AAQS+GEPSTQMTLNTFHLAGRGEMNVTLGIPRL+EILM+A   I TP+M CPLL+  
Sbjct: 1227 VVAAQSIGEPSTQMTLNTFHLAGRGEMNVTLGIPRLKEILMTASANISTPIMVCPLLEKW 1286

Query: 1009 TKEEGEGLAARLRRICVADIVESMVVSTLPFYIHRRGTSSTLYKLNMKLFPPGLYPPHTD 830
            T+++   +AA+LRR+ VADIVE + V T+PFY +  G  STLYKL MKL+P   YPP +D
Sbjct: 1287 TRDDARRVAAKLRRVRVADIVEKIEVCTVPFY-NTNGHVSTLYKLQMKLYPQKHYPPQSD 1345

Query: 829  VSLEDCRSILSTTFVDAMDVAIARHLDLISKISDIDVVSXXXXXXXXXXXXXGSKSASGE 650
            +++++C++ L T FVDAM+ AI +HLDL+ KI++I  V               S+S  G+
Sbjct: 1346 LTVDECQTTLRTVFVDAMEHAIEKHLDLLHKINEIRAVKVNDAEGSLSDGGEESESRHGD 1405

Query: 649  DNDTXXXXXXXXXXXXXXXXXXXXXXXXXXXXGQKRKNQTRXXXXXXXXXEKKISVELDD 470
              +T                             +KRK Q R         E +  ++ + 
Sbjct: 1406 GEET----------GMSDGDDENDNDDDLGTDAEKRKRQERDEMEYDDDTENEEGMDSES 1455

Query: 469  ETQSGFXXXXXXXXXXXXXXXEVRGDDVDAAADE-QPPKDDPGSVADEEXXXXXXXXXXX 293
            E ++                    GDD+  A +E +  K D  SV D             
Sbjct: 1456 EEET-------KVKHQSEEDPAESGDDLQEADEEHKTSKSDMTSVDD---MSYSAKKVKK 1505

Query: 292  XXTKVSKTRAKTKSKTEAKFSQN-----------------FVEAKGLNFEAHFLLTDQPH 164
               K    + + ++ TE K  +                   VE+K L+FE H+   D+PH
Sbjct: 1506 SKDKHETAKLQERTHTEGKSDERKQDQMTYKRKKKLKRTVHVESKDLDFEIHYAFCDEPH 1565

Query: 163  ILLAEIAQATAKRVYFRECKDIDRCSVVEPKRSTDRVALQTAGVNFMAFWDLQ 5
            ILLA+IAQ TA+ ++ R CK+ID+C V E K       L+T+GVNF  FW+L+
Sbjct: 1566 ILLAQIAQKTARSIFVRACKNIDKCEVEEKKEKGSSAVLKTSGVNFEVFWNLR 1618


>ref|XP_010653802.1| PREDICTED: DNA-directed RNA polymerase I subunit rpa1 [Vitis
            vinifera]
          Length = 1691

 Score =  659 bits (1701), Expect = 0.0
 Identities = 384/790 (48%), Positives = 468/790 (59%), Gaps = 36/790 (4%)
 Frame = -2

Query: 2263 VHELYGADTAGRLLSIFSRLFTTFLQMHAFTCGVDDLLLKGESDMDREAMLEKSEAQSED 2084
            V ELYG++TAG LLS+ SRLFT FLQMH FTCGVDDLL+    D+ R+  L+KSE   E 
Sbjct: 825  VQELYGSNTAGILLSVLSRLFTVFLQMHGFTCGVDDLLISPNYDIARKIELDKSENIGEL 884

Query: 2083 VHCRFTGAKCGNIDPLDLRKEIEKVLRNNGESATARLDRMMSNALNVLTSEVNKALFPAG 1904
            VHC+F G+  G IDP+ L+ E+EK++ +NGE+A  RLDRMM N LN LTS+VNK L   G
Sbjct: 885  VHCKFIGSNHGKIDPVKLQVEVEKIILSNGEAAITRLDRMMKNELNELTSKVNKDLLLKG 944

Query: 1903 LQKPFPGNCLSLMTTTGAKGGLVNLTQISSLLGQQELEGKRVPRMISGKTLPCFPPWDTS 1724
            L KPFP NCLSLMTTTGAKG  VN +QISS LGQQ+LEGKRVPRM+SGKTLPCFPPWD +
Sbjct: 945  LVKPFPKNCLSLMTTTGAKGSTVNFSQISSFLGQQDLEGKRVPRMVSGKTLPCFPPWDCA 1004

Query: 1723 CRAGGFIGDRFLTALRPQEYYFHCMAGRDGLVDTAIKTARSGYLQRCLIKNLESLKVCYD 1544
             RAGGFI DRFLT L PQEYYFHCMAGR+GLVDTA+KT+RSGYLQRCLIKNLE LKVCYD
Sbjct: 1005 ARAGGFISDRFLTGLHPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKVCYD 1064

Query: 1543 YTVRDADGSVVQFAYGEDGVDVLKTSYIAEAQVLFNNQRVVLESLGSQLGDAHLSKSNRF 1364
            YTVRD+DGS+VQF YG+DGVDV +TS+I E + L  N+ VV E  G         K N +
Sbjct: 1065 YTVRDSDGSIVQFNYGDDGVDVHQTSFITEFEALAVNEEVVCEKFGQD------GKFNGY 1118

Query: 1363 IKELPDSLREIATSLACQLTHLPKNERGHRHQIXXXXXXXXXXXXXXXXLAEPGEPVGVI 1184
            I++LP  LR+        +    +  +   +                  LA+PGEPVGV+
Sbjct: 1119 IQKLPKELRKKTKKF---IEGFMEERQDFDNMKKQKDFVNLVKQKYISSLAQPGEPVGVL 1175

Query: 1183 AAQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILMSAKEAIRTPVMTCPLLDGMTK 1004
            AAQSVGEPSTQMTLNTFHLAGRGE+NVTLGIPRLQEILM+A   I+TP+MTCPL  G +K
Sbjct: 1176 AAQSVGEPSTQMTLNTFHLAGRGEVNVTLGIPRLQEILMTAANDIKTPIMTCPLQMGRSK 1235

Query: 1003 EEGEGLAARLRRICVADIVESMVVSTLPFYIHRRGTSSTLYKLNMKLFPPGLYPPHTDVS 824
            ++ E LAA+L+++ VADI ESM VS +PF +    T S +YKL MKL+ P LYPPHT +S
Sbjct: 1236 DDAERLAAKLKKVTVADITESMEVSIVPFTVQDHQTCS-IYKLKMKLYEPALYPPHTGIS 1294

Query: 823  LEDCRSILSTTFVDAMDVAIARHLDLISKISDIDVVSXXXXXXXXXXXXXGSKSASGEDN 644
            LEDC   L   FV  ++ AI  HL L+SKIS I                  S ++   D 
Sbjct: 1295 LEDCEETLEAVFVRELEDAIQNHLLLLSKISGI----------KNFLPDSRSMASKETDE 1344

Query: 643  DTXXXXXXXXXXXXXXXXXXXXXXXXXXXXGQKRKNQTRXXXXXXXXXEKKISVELDDET 464
            D                              QKRK Q               S E+D   
Sbjct: 1345 DASGDGLAGGNGDEDDDGEDDGGAEDLGLDAQKRKQQA--------------SDEMDYGD 1390

Query: 463  QSGFXXXXXXXXXXXXXXXEVRGDDVDAAADEQ----PPKDDPGSVADEEXXXXXXXXXX 296
              G                 V  D+V+ + +E+     PKD+   V  +           
Sbjct: 1391 SEGEPDEGEPSAGLTEEIDLVE-DEVEISNNEEVGISDPKDEDSKVPSK----------- 1438

Query: 295  XXXTKVSKTRAKTKSKTEAKFSQNF------------VEAKGLNFEAHFLLTDQPHILLA 152
                  SK+    K+KTEAK  + F            V+AKG  FE HF  T++PHILLA
Sbjct: 1439 ------SKSSKNKKAKTEAKRKKRFRAIKKDFDRAILVKAKGTYFEVHFRFTNEPHILLA 1492

Query: 151  EIAQATAKRVYFRECKDIDRCSVV------------EPKRSTD--------RVALQTAGV 32
            +IAQ  A +VY R    ID C V+            +PK+  +          ALQTAGV
Sbjct: 1493 QIAQKAANKVYIRSSGKIDLCQVIDCNKDQVIYYGRDPKKRENIPGEEKKKLPALQTAGV 1552

Query: 31   NFMAFWDLQD 2
            +F AFW +QD
Sbjct: 1553 DFTAFWKMQD 1562


>emb|CBI29879.3| unnamed protein product [Vitis vinifera]
          Length = 1669

 Score =  659 bits (1701), Expect = 0.0
 Identities = 384/790 (48%), Positives = 468/790 (59%), Gaps = 36/790 (4%)
 Frame = -2

Query: 2263 VHELYGADTAGRLLSIFSRLFTTFLQMHAFTCGVDDLLLKGESDMDREAMLEKSEAQSED 2084
            V ELYG++TAG LLS+ SRLFT FLQMH FTCGVDDLL+    D+ R+  L+KSE   E 
Sbjct: 803  VQELYGSNTAGILLSVLSRLFTVFLQMHGFTCGVDDLLISPNYDIARKIELDKSENIGEL 862

Query: 2083 VHCRFTGAKCGNIDPLDLRKEIEKVLRNNGESATARLDRMMSNALNVLTSEVNKALFPAG 1904
            VHC+F G+  G IDP+ L+ E+EK++ +NGE+A  RLDRMM N LN LTS+VNK L   G
Sbjct: 863  VHCKFIGSNHGKIDPVKLQVEVEKIILSNGEAAITRLDRMMKNELNELTSKVNKDLLLKG 922

Query: 1903 LQKPFPGNCLSLMTTTGAKGGLVNLTQISSLLGQQELEGKRVPRMISGKTLPCFPPWDTS 1724
            L KPFP NCLSLMTTTGAKG  VN +QISS LGQQ+LEGKRVPRM+SGKTLPCFPPWD +
Sbjct: 923  LVKPFPKNCLSLMTTTGAKGSTVNFSQISSFLGQQDLEGKRVPRMVSGKTLPCFPPWDCA 982

Query: 1723 CRAGGFIGDRFLTALRPQEYYFHCMAGRDGLVDTAIKTARSGYLQRCLIKNLESLKVCYD 1544
             RAGGFI DRFLT L PQEYYFHCMAGR+GLVDTA+KT+RSGYLQRCLIKNLE LKVCYD
Sbjct: 983  ARAGGFISDRFLTGLHPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKVCYD 1042

Query: 1543 YTVRDADGSVVQFAYGEDGVDVLKTSYIAEAQVLFNNQRVVLESLGSQLGDAHLSKSNRF 1364
            YTVRD+DGS+VQF YG+DGVDV +TS+I E + L  N+ VV E  G         K N +
Sbjct: 1043 YTVRDSDGSIVQFNYGDDGVDVHQTSFITEFEALAVNEEVVCEKFGQD------GKFNGY 1096

Query: 1363 IKELPDSLREIATSLACQLTHLPKNERGHRHQIXXXXXXXXXXXXXXXXLAEPGEPVGVI 1184
            I++LP  LR+        +    +  +   +                  LA+PGEPVGV+
Sbjct: 1097 IQKLPKELRKKTKKF---IEGFMEERQDFDNMKKQKDFVNLVKQKYISSLAQPGEPVGVL 1153

Query: 1183 AAQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILMSAKEAIRTPVMTCPLLDGMTK 1004
            AAQSVGEPSTQMTLNTFHLAGRGE+NVTLGIPRLQEILM+A   I+TP+MTCPL  G +K
Sbjct: 1154 AAQSVGEPSTQMTLNTFHLAGRGEVNVTLGIPRLQEILMTAANDIKTPIMTCPLQMGRSK 1213

Query: 1003 EEGEGLAARLRRICVADIVESMVVSTLPFYIHRRGTSSTLYKLNMKLFPPGLYPPHTDVS 824
            ++ E LAA+L+++ VADI ESM VS +PF +    T S +YKL MKL+ P LYPPHT +S
Sbjct: 1214 DDAERLAAKLKKVTVADITESMEVSIVPFTVQDHQTCS-IYKLKMKLYEPALYPPHTGIS 1272

Query: 823  LEDCRSILSTTFVDAMDVAIARHLDLISKISDIDVVSXXXXXXXXXXXXXGSKSASGEDN 644
            LEDC   L   FV  ++ AI  HL L+SKIS I                  S ++   D 
Sbjct: 1273 LEDCEETLEAVFVRELEDAIQNHLLLLSKISGI----------KNFLPDSRSMASKETDE 1322

Query: 643  DTXXXXXXXXXXXXXXXXXXXXXXXXXXXXGQKRKNQTRXXXXXXXXXEKKISVELDDET 464
            D                              QKRK Q               S E+D   
Sbjct: 1323 DASGDGLAGGNGDEDDDGEDDGGAEDLGLDAQKRKQQA--------------SDEMDYGD 1368

Query: 463  QSGFXXXXXXXXXXXXXXXEVRGDDVDAAADEQ----PPKDDPGSVADEEXXXXXXXXXX 296
              G                 V  D+V+ + +E+     PKD+   V  +           
Sbjct: 1369 SEGEPDEGEPSAGLTEEIDLVE-DEVEISNNEEVGISDPKDEDSKVPSK----------- 1416

Query: 295  XXXTKVSKTRAKTKSKTEAKFSQNF------------VEAKGLNFEAHFLLTDQPHILLA 152
                  SK+    K+KTEAK  + F            V+AKG  FE HF  T++PHILLA
Sbjct: 1417 ------SKSSKNKKAKTEAKRKKRFRAIKKDFDRAILVKAKGTYFEVHFRFTNEPHILLA 1470

Query: 151  EIAQATAKRVYFRECKDIDRCSVV------------EPKRSTD--------RVALQTAGV 32
            +IAQ  A +VY R    ID C V+            +PK+  +          ALQTAGV
Sbjct: 1471 QIAQKAANKVYIRSSGKIDLCQVIDCNKDQVIYYGRDPKKRENIPGEEKKKLPALQTAGV 1530

Query: 31   NFMAFWDLQD 2
            +F AFW +QD
Sbjct: 1531 DFTAFWKMQD 1540


>ref|XP_008655367.1| PREDICTED: DNA-directed RNA polymerase I subunit rpa1 isoform X1 [Zea
            mays]
          Length = 1690

 Score =  656 bits (1692), Expect = 0.0
 Identities = 373/756 (49%), Positives = 470/756 (62%), Gaps = 2/756 (0%)
 Frame = -2

Query: 2263 VHELYGADTAGRLLSIFSRLFTTFLQMHAFTCGVDDLLLKGESDMDREAMLEKSEAQSED 2084
            VHELYGA TAG LLS FSRLFT FLQ+H FTCGVDDLLL  E D  R  +L  SE +S +
Sbjct: 822  VHELYGAYTAGILLSTFSRLFTLFLQLHGFTCGVDDLLLLPEKDKLRSKILSGSEVRSNE 881

Query: 2083 VHCRFTGAKCGNI-DPLDLRKEIEKVLRNNGESATARLDRMMSNALNVLTSEVNKALFPA 1907
            VH +FTGA   +  D + L  E+EK +R+NGES TA LD  M NALN +T++VNK LFP 
Sbjct: 882  VHWKFTGADEDHKGDLVKLHMEVEKAVRSNGESDTATLDNDMKNALNGITTDVNKILFPD 941

Query: 1906 GLQKPFPGNCLSLMTTTGAKGGLVNLTQISSLLGQQELEGKRVPRMISGKTLPCFPPWDT 1727
            GLQKPFPGNCLSLMTTTGAKGG VN+ QISSLLGQQELEGKRVPRM+SGKTLPCFPPWD 
Sbjct: 942  GLQKPFPGNCLSLMTTTGAKGGPVNMNQISSLLGQQELEGKRVPRMVSGKTLPCFPPWDI 1001

Query: 1726 SCRAGGFIGDRFLTALRPQEYYFHCMAGRDGLVDTAIKTARSGYLQRCLIKNLESLKVCY 1547
            S RAGGFI DRFLT LRPQEYYFHCMAGR+GLVDTA+KT+RSGYLQRCLIK LESLKV Y
Sbjct: 1002 SSRAGGFISDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKCLESLKVSY 1061

Query: 1546 DYTVRDADGSVVQFAYGEDGVDVLKTSYIAEAQVLFNNQRVVLESLGSQLGDAHLSKSNR 1367
            D+TVRDADGS+VQF YGEDGVDVLKTS++ E + L +N++ VL  LG    D  LSK N 
Sbjct: 1062 DHTVRDADGSIVQFCYGEDGVDVLKTSFLNEFKELADNRKAVLAKLGGCSKDPTLSKCNG 1121

Query: 1366 FIKELPDSLREIATSLACQLTHLPKNERGHRHQIXXXXXXXXXXXXXXXXLAEPGEPVGV 1187
            +I ELP  L + A         L  ++   R+ I                L +PGE VGV
Sbjct: 1122 YITELPPKLIDKAEEF------LKHSKECCRYNIEAKELKELLKVKFLSSLVDPGEAVGV 1175

Query: 1186 IAAQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILMSAKEAIRTPVMTCPLLDGMT 1007
            +AAQS+GEPSTQMTLNTFHLAGRG+MNVTLGIPRL+EILM+A + IRTPVM CPLL+ ++
Sbjct: 1176 VAAQSIGEPSTQMTLNTFHLAGRGDMNVTLGIPRLKEILMTASDNIRTPVMKCPLLEHIS 1235

Query: 1006 KEEGEGLAARLRRICVADIVESMVVSTLPFYIHRRGTSSTLYKLNMKLFPPGLYPPHTDV 827
            +++ + + A+LRR+ VAD+VE + V T+PFY +  G  STLYKL MKL+P       + +
Sbjct: 1236 EDDAKMVVAKLRRVRVADVVEKIEVCTVPFY-NSNGRVSTLYKLQMKLYPQDQL--ESGL 1292

Query: 826  SLEDCRSILSTTFVDAMDVAIARHLDLISKISDIDVVSXXXXXXXXXXXXXGSKSASGED 647
            ++++C++ L T FV+AM+ AI +HLDL+ KI++I  V               S+S   + 
Sbjct: 1293 TIDECQATLRTVFVEAMEHAIEKHLDLLYKINEIRAVKIEDTEGSLLNGDEESQSRHADG 1352

Query: 646  NDTXXXXXXXXXXXXXXXXXXXXXXXXXXXXGQKRKNQTRXXXXXXXXXEKKISVELDDE 467
             DT                              +  + T          E+      +D 
Sbjct: 1353 GDTGTSDDDDQNDNDVDLGTDAEKMKRQEKDEMEYDDDTETEEGMGSESEESD----EDP 1408

Query: 466  TQSGFXXXXXXXXXXXXXXXEVRGDDVDAAADE-QPPKDDPGSVADEEXXXXXXXXXXXX 290
             +SG                    DD+  +  + +  KDD G+   EE            
Sbjct: 1409 AESGDDSQEADKEHTISKSETTSVDDLPYSVKKGKKSKDDRGTAKLEEKNQNEGRLDDQK 1468

Query: 289  XTKVSKTRAKTKSKTEAKFSQNFVEAKGLNFEAHFLLTDQPHILLAEIAQATAKRVYFRE 110
              ++ K R K K           VE+  L+FE H+   D+PHILLA+IA+  A+ +  + 
Sbjct: 1469 QGQIKKRRKKLKHTIH-------VESSDLDFEIHYAFHDEPHILLAQIAKKIARTILVKA 1521

Query: 109  CKDIDRCSVVEPKRSTDRVALQTAGVNFMAFWDLQD 2
            C +ID C +V+P  +  R  L+TAGVNF   W+L +
Sbjct: 1522 CNNIDHCKIVKPMHNHTR--LETAGVNFEVVWNLSE 1555


>ref|XP_006656244.1| PREDICTED: DNA-directed RNA polymerase I subunit rpa1-like [Oryza
            brachyantha]
          Length = 1755

 Score =  636 bits (1640), Expect = e-179
 Identities = 380/829 (45%), Positives = 480/829 (57%), Gaps = 75/829 (9%)
 Frame = -2

Query: 2263 VHELYGADTAGRLLSIFSRLFTTFLQMHAFTCGVDDLLLKGESDMDREAMLEKSEAQSED 2084
            VHELYG D AG LLS FSRLFT  LQ H FTCGVDDLLL   SD  R+ +L  SE  S+ 
Sbjct: 828  VHELYGPDAAGVLLSSFSRLFTMVLQFHGFTCGVDDLLLCQASDELRKEILGTSEECSKI 887

Query: 2083 VHCRF-----------------------------------TGAKCGNIDPLDLRKEIEKV 2009
            VH  F                                   T +K G  D + L+ E+E+V
Sbjct: 888  VHKEFICPQNKKGDEAEDTRPKEDGKAEDMCLKEDNEAEDTRSKEGVEDQVKLQMEVERV 947

Query: 2008 LRNNGESATARLDRMMSNALNVLTSEVNKALFPAGLQKPFPGNCLSLMTTTGAKGGLVNL 1829
            +R N ESAT  LDR MSN LNV+TS+VN+ LFP GLQKPFPGNCLSLMT TGAKGGLVN+
Sbjct: 948  IRRNRESATVMLDRKMSNTLNVITSKVNQELFPYGLQKPFPGNCLSLMTQTGAKGGLVNM 1007

Query: 1828 TQISSLLGQQELEGKRVPRMISGKTLPCFPPWDTSCRAGGFIGDRFLTALRPQEYYFHCM 1649
            TQISSLLGQQELEGKRVPRMISGKTLPCFP WDTS RAGGFI DRFLT LRPQEYYFHCM
Sbjct: 1008 TQISSLLGQQELEGKRVPRMISGKTLPCFPSWDTSARAGGFISDRFLTGLRPQEYYFHCM 1067

Query: 1648 AGRDGLVDTAIKTARSGYLQRCLIKNLESLKVCYDYTVRDADGSVVQFAYGEDGVDVLKT 1469
            AGR+GLVDTA+KT+RSGYLQRCLIK+LESLKV YD+TVRD DGS++QF YGEDGVDVLKT
Sbjct: 1068 AGREGLVDTAVKTSRSGYLQRCLIKSLESLKVSYDHTVRDVDGSIIQFCYGEDGVDVLKT 1127

Query: 1468 SYIAEAQVLFNNQRVVLESLGSQLGDAH-LSKSNRFIKELPDSLREIATSLACQLTHLPK 1292
            S++ + + L +N++ VL  L   L D H LS  N +I +LP  L      +   +  L +
Sbjct: 1128 SFLDKFKELADNRKAVLHKLDG-LNDKHLLSNPNGYISKLPVKL------IGSAMKFLKE 1180

Query: 1291 NERGH--RHQIXXXXXXXXXXXXXXXXLAEPGEPVGVIAAQSVGEPSTQMTLNTFHLAGR 1118
             E+    R+ I                L +PGE VGV+AAQS+GEPSTQMTLNTFHLAGR
Sbjct: 1181 TEKKKLCRYDIEEEELMKLLKAKYLSSLVDPGEAVGVVAAQSIGEPSTQMTLNTFHLAGR 1240

Query: 1117 GEMNVTLGIPRLQEILMSAKEAIRTPVMTCPLLDGMTKEEGE------------------ 992
            GEMNVTLGIPRL+E+LM+A   I TP M CP+L+  T+++ E                  
Sbjct: 1241 GEMNVTLGIPRLKELLMTASAKISTPFMKCPMLEDKTRDDDEQIDAELKKVRDAERRAAK 1300

Query: 991  --------GLAARLRRICVADIVESMVVSTLPFYIHRRGTSSTLYKLNMKLFPPGLYPPH 836
                     +A +LRRI VAD+VE + V T+PF+ +  G  STLYKL MKL+P  LYPP 
Sbjct: 1301 REKIRDAQRMAVKLRRIRVADVVERIEVCTVPFH-NNNGCVSTLYKLQMKLYPRELYPPE 1359

Query: 835  TDVSLEDCRSILSTTFVDAMDVAIARHLDLISKISDIDVVSXXXXXXXXXXXXXGSKSAS 656
            +++++++C+  L T F+DAMD+AI++HLDL+ KI+ I  V               S++  
Sbjct: 1360 SELTVDECQETLRTVFIDAMDLAISKHLDLLHKINAIQAVKVNDTESQPSDGVEESENGP 1419

Query: 655  GEDNDTXXXXXXXXXXXXXXXXXXXXXXXXXXXXGQKRKNQTRXXXXXXXXXEKKISVEL 476
             +D +                              QK K Q           EK+ S ++
Sbjct: 1420 TDDGN---------------GLSDGENEDDLGADAQKWKQQEIDEMEYDDDAEKEESSDM 1464

Query: 475  DDETQSGFXXXXXXXXXXXXXXXEVRGDDVDAAADEQPPKDDPGSVADEEXXXXXXXXXX 296
            D E++                  +   +D      E+  + + G V D            
Sbjct: 1465 DSESED-------------DTKFKPESEDDRPKLGEELEETEEGHVLDSSYKGKNSKATQ 1511

Query: 295  XXXTKVSKTR--AKTKSKTEAKFSQNF-----VEAKGLNFEAHFLLTDQPHILLAEIAQA 137
                   +    A  K++   KF +N       E+ GLNFE H+ L +QPHILLA+IAQ 
Sbjct: 1512 ATARLQDERNKVADEKAQVTIKFKKNIKWTIHYESTGLNFEVHYALQEQPHILLAQIAQR 1571

Query: 136  TAKRVYFRECKDIDRCSV----VEPKRSTDRVALQTAGVNFMAFWDLQD 2
            TA+ V+ + C +ID+C+V    V+  +  + + LQT GVNF  FW+L D
Sbjct: 1572 TARSVFIKACSNIDQCTVNKIDVDSDKIDEAIVLQTVGVNFGVFWNLVD 1620


>ref|XP_008655376.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA1 isoform X4 [Zea
            mays]
          Length = 1509

 Score =  618 bits (1593), Expect = e-174
 Identities = 354/707 (50%), Positives = 440/707 (62%), Gaps = 2/707 (0%)
 Frame = -2

Query: 2263 VHELYGADTAGRLLSIFSRLFTTFLQMHAFTCGVDDLLLKGESDMDREAMLEKSEAQSED 2084
            VHELYGA TAG LLS FSRLFT FLQ+H FTCGVDDLLL  E D  R  +L  SE +S +
Sbjct: 822  VHELYGAYTAGILLSTFSRLFTLFLQLHGFTCGVDDLLLLPEKDKLRSKILSGSEVRSNE 881

Query: 2083 VHCRFTGAKCGNI-DPLDLRKEIEKVLRNNGESATARLDRMMSNALNVLTSEVNKALFPA 1907
            VH +FTGA   +  D + L  E+EK +R+NGES TA LD  M NALN +T++VNK LFP 
Sbjct: 882  VHWKFTGADEDHKGDLVKLHMEVEKAVRSNGESDTATLDNDMKNALNGITTDVNKILFPD 941

Query: 1906 GLQKPFPGNCLSLMTTTGAKGGLVNLTQISSLLGQQELEGKRVPRMISGKTLPCFPPWDT 1727
            GLQKPFPGNCLSLMTTTGAKGG VN+ QISSLLGQQELEGKRVPRM+SGKTLPCFPPWD 
Sbjct: 942  GLQKPFPGNCLSLMTTTGAKGGPVNMNQISSLLGQQELEGKRVPRMVSGKTLPCFPPWDI 1001

Query: 1726 SCRAGGFIGDRFLTALRPQEYYFHCMAGRDGLVDTAIKTARSGYLQRCLIKNLESLKVCY 1547
            S RAGGFI DRFLT LRPQEYYFHCMAGR+GLVDTA+KT+RSGYLQRCLIK LESLKV Y
Sbjct: 1002 SSRAGGFISDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKCLESLKVSY 1061

Query: 1546 DYTVRDADGSVVQFAYGEDGVDVLKTSYIAEAQVLFNNQRVVLESLGSQLGDAHLSKSNR 1367
            D+TVRDADGS+VQF YGEDGVDVLKTS++ E + L +N++ VL  LG    D  LSK N 
Sbjct: 1062 DHTVRDADGSIVQFCYGEDGVDVLKTSFLNEFKELADNRKAVLAKLGGCSKDPTLSKCNG 1121

Query: 1366 FIKELPDSLREIATSLACQLTHLPKNERGHRHQIXXXXXXXXXXXXXXXXLAEPGEPVGV 1187
            +I ELP  L + A         L  ++   R+ I                L +PGE VGV
Sbjct: 1122 YITELPPKLIDKAEEF------LKHSKECCRYNIEAKELKELLKVKFLSSLVDPGEAVGV 1175

Query: 1186 IAAQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILMSAKEAIRTPVMTCPLLDGMT 1007
            +AAQS+GEPSTQMTLNTFHLAGRG+MNVTLGIPRL+EILM+A + IRTPVM CPLL+ ++
Sbjct: 1176 VAAQSIGEPSTQMTLNTFHLAGRGDMNVTLGIPRLKEILMTASDNIRTPVMKCPLLEHIS 1235

Query: 1006 KEEGEGLAARLRRICVADIVESMVVSTLPFYIHRRGTSSTLYKLNMKLFPPGLYPPHTDV 827
            +++ + + A+LRR+ VAD+VE + V T+PFY +  G  STLYKL MKL+P       + +
Sbjct: 1236 EDDAKMVVAKLRRVRVADVVEKIEVCTVPFY-NSNGRVSTLYKLQMKLYPQDQL--ESGL 1292

Query: 826  SLEDCRSILSTTFVDAMDVAIARHLDLISKISDIDVVSXXXXXXXXXXXXXGSKSASGED 647
            ++++C++ L T FV+AM+ AI +HLDL+ KI++I  V               S+S   + 
Sbjct: 1293 TIDECQATLRTVFVEAMEHAIEKHLDLLYKINEIRAVKIEDTEGSLLNGDEESQSRHADG 1352

Query: 646  NDTXXXXXXXXXXXXXXXXXXXXXXXXXXXXGQKRKNQTRXXXXXXXXXEKKISVELDDE 467
             DT                              +  + T          E+      +D 
Sbjct: 1353 GDTGTSDDDDQNDNDVDLGTDAEKMKRQEKDEMEYDDDTETEEGMGSESEESD----EDP 1408

Query: 466  TQSGFXXXXXXXXXXXXXXXEVRGDDVDAAADE-QPPKDDPGSVADEEXXXXXXXXXXXX 290
             +SG                    DD+  +  + +  KDD G+   EE            
Sbjct: 1409 AESGDDSQEADKEHTISKSETTSVDDLPYSVKKGKKSKDDRGTAKLEEKNQNEGRLDDQK 1468

Query: 289  XTKVSKTRAKTKSKTEAKFSQNFVEAKGLNFEAHFLLTDQPHILLAE 149
              ++ K R K K           VE+  L+FE H+   D+PHILLA+
Sbjct: 1469 QGQIKKRRKKLKHTIH-------VESSDLDFEIHYAFHDEPHILLAQ 1508


>ref|XP_008655373.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA1 isoform X3 [Zea
            mays]
          Length = 1523

 Score =  618 bits (1593), Expect = e-174
 Identities = 354/707 (50%), Positives = 440/707 (62%), Gaps = 2/707 (0%)
 Frame = -2

Query: 2263 VHELYGADTAGRLLSIFSRLFTTFLQMHAFTCGVDDLLLKGESDMDREAMLEKSEAQSED 2084
            VHELYGA TAG LLS FSRLFT FLQ+H FTCGVDDLLL  E D  R  +L  SE +S +
Sbjct: 822  VHELYGAYTAGILLSTFSRLFTLFLQLHGFTCGVDDLLLLPEKDKLRSKILSGSEVRSNE 881

Query: 2083 VHCRFTGAKCGNI-DPLDLRKEIEKVLRNNGESATARLDRMMSNALNVLTSEVNKALFPA 1907
            VH +FTGA   +  D + L  E+EK +R+NGES TA LD  M NALN +T++VNK LFP 
Sbjct: 882  VHWKFTGADEDHKGDLVKLHMEVEKAVRSNGESDTATLDNDMKNALNGITTDVNKILFPD 941

Query: 1906 GLQKPFPGNCLSLMTTTGAKGGLVNLTQISSLLGQQELEGKRVPRMISGKTLPCFPPWDT 1727
            GLQKPFPGNCLSLMTTTGAKGG VN+ QISSLLGQQELEGKRVPRM+SGKTLPCFPPWD 
Sbjct: 942  GLQKPFPGNCLSLMTTTGAKGGPVNMNQISSLLGQQELEGKRVPRMVSGKTLPCFPPWDI 1001

Query: 1726 SCRAGGFIGDRFLTALRPQEYYFHCMAGRDGLVDTAIKTARSGYLQRCLIKNLESLKVCY 1547
            S RAGGFI DRFLT LRPQEYYFHCMAGR+GLVDTA+KT+RSGYLQRCLIK LESLKV Y
Sbjct: 1002 SSRAGGFISDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKCLESLKVSY 1061

Query: 1546 DYTVRDADGSVVQFAYGEDGVDVLKTSYIAEAQVLFNNQRVVLESLGSQLGDAHLSKSNR 1367
            D+TVRDADGS+VQF YGEDGVDVLKTS++ E + L +N++ VL  LG    D  LSK N 
Sbjct: 1062 DHTVRDADGSIVQFCYGEDGVDVLKTSFLNEFKELADNRKAVLAKLGGCSKDPTLSKCNG 1121

Query: 1366 FIKELPDSLREIATSLACQLTHLPKNERGHRHQIXXXXXXXXXXXXXXXXLAEPGEPVGV 1187
            +I ELP  L + A         L  ++   R+ I                L +PGE VGV
Sbjct: 1122 YITELPPKLIDKAEEF------LKHSKECCRYNIEAKELKELLKVKFLSSLVDPGEAVGV 1175

Query: 1186 IAAQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILMSAKEAIRTPVMTCPLLDGMT 1007
            +AAQS+GEPSTQMTLNTFHLAGRG+MNVTLGIPRL+EILM+A + IRTPVM CPLL+ ++
Sbjct: 1176 VAAQSIGEPSTQMTLNTFHLAGRGDMNVTLGIPRLKEILMTASDNIRTPVMKCPLLEHIS 1235

Query: 1006 KEEGEGLAARLRRICVADIVESMVVSTLPFYIHRRGTSSTLYKLNMKLFPPGLYPPHTDV 827
            +++ + + A+LRR+ VAD+VE + V T+PFY +  G  STLYKL MKL+P       + +
Sbjct: 1236 EDDAKMVVAKLRRVRVADVVEKIEVCTVPFY-NSNGRVSTLYKLQMKLYPQDQL--ESGL 1292

Query: 826  SLEDCRSILSTTFVDAMDVAIARHLDLISKISDIDVVSXXXXXXXXXXXXXGSKSASGED 647
            ++++C++ L T FV+AM+ AI +HLDL+ KI++I  V               S+S   + 
Sbjct: 1293 TIDECQATLRTVFVEAMEHAIEKHLDLLYKINEIRAVKIEDTEGSLLNGDEESQSRHADG 1352

Query: 646  NDTXXXXXXXXXXXXXXXXXXXXXXXXXXXXGQKRKNQTRXXXXXXXXXEKKISVELDDE 467
             DT                              +  + T          E+      +D 
Sbjct: 1353 GDTGTSDDDDQNDNDVDLGTDAEKMKRQEKDEMEYDDDTETEEGMGSESEESD----EDP 1408

Query: 466  TQSGFXXXXXXXXXXXXXXXEVRGDDVDAAADE-QPPKDDPGSVADEEXXXXXXXXXXXX 290
             +SG                    DD+  +  + +  KDD G+   EE            
Sbjct: 1409 AESGDDSQEADKEHTISKSETTSVDDLPYSVKKGKKSKDDRGTAKLEEKNQNEGRLDDQK 1468

Query: 289  XTKVSKTRAKTKSKTEAKFSQNFVEAKGLNFEAHFLLTDQPHILLAE 149
              ++ K R K K           VE+  L+FE H+   D+PHILLA+
Sbjct: 1469 QGQIKKRRKKLKHTIH-------VESSDLDFEIHYAFHDEPHILLAQ 1508


>ref|XP_008655371.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA1 isoform X2 [Zea
            mays]
          Length = 1533

 Score =  618 bits (1593), Expect = e-174
 Identities = 354/707 (50%), Positives = 440/707 (62%), Gaps = 2/707 (0%)
 Frame = -2

Query: 2263 VHELYGADTAGRLLSIFSRLFTTFLQMHAFTCGVDDLLLKGESDMDREAMLEKSEAQSED 2084
            VHELYGA TAG LLS FSRLFT FLQ+H FTCGVDDLLL  E D  R  +L  SE +S +
Sbjct: 822  VHELYGAYTAGILLSTFSRLFTLFLQLHGFTCGVDDLLLLPEKDKLRSKILSGSEVRSNE 881

Query: 2083 VHCRFTGAKCGNI-DPLDLRKEIEKVLRNNGESATARLDRMMSNALNVLTSEVNKALFPA 1907
            VH +FTGA   +  D + L  E+EK +R+NGES TA LD  M NALN +T++VNK LFP 
Sbjct: 882  VHWKFTGADEDHKGDLVKLHMEVEKAVRSNGESDTATLDNDMKNALNGITTDVNKILFPD 941

Query: 1906 GLQKPFPGNCLSLMTTTGAKGGLVNLTQISSLLGQQELEGKRVPRMISGKTLPCFPPWDT 1727
            GLQKPFPGNCLSLMTTTGAKGG VN+ QISSLLGQQELEGKRVPRM+SGKTLPCFPPWD 
Sbjct: 942  GLQKPFPGNCLSLMTTTGAKGGPVNMNQISSLLGQQELEGKRVPRMVSGKTLPCFPPWDI 1001

Query: 1726 SCRAGGFIGDRFLTALRPQEYYFHCMAGRDGLVDTAIKTARSGYLQRCLIKNLESLKVCY 1547
            S RAGGFI DRFLT LRPQEYYFHCMAGR+GLVDTA+KT+RSGYLQRCLIK LESLKV Y
Sbjct: 1002 SSRAGGFISDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKCLESLKVSY 1061

Query: 1546 DYTVRDADGSVVQFAYGEDGVDVLKTSYIAEAQVLFNNQRVVLESLGSQLGDAHLSKSNR 1367
            D+TVRDADGS+VQF YGEDGVDVLKTS++ E + L +N++ VL  LG    D  LSK N 
Sbjct: 1062 DHTVRDADGSIVQFCYGEDGVDVLKTSFLNEFKELADNRKAVLAKLGGCSKDPTLSKCNG 1121

Query: 1366 FIKELPDSLREIATSLACQLTHLPKNERGHRHQIXXXXXXXXXXXXXXXXLAEPGEPVGV 1187
            +I ELP  L + A         L  ++   R+ I                L +PGE VGV
Sbjct: 1122 YITELPPKLIDKAEEF------LKHSKECCRYNIEAKELKELLKVKFLSSLVDPGEAVGV 1175

Query: 1186 IAAQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILMSAKEAIRTPVMTCPLLDGMT 1007
            +AAQS+GEPSTQMTLNTFHLAGRG+MNVTLGIPRL+EILM+A + IRTPVM CPLL+ ++
Sbjct: 1176 VAAQSIGEPSTQMTLNTFHLAGRGDMNVTLGIPRLKEILMTASDNIRTPVMKCPLLEHIS 1235

Query: 1006 KEEGEGLAARLRRICVADIVESMVVSTLPFYIHRRGTSSTLYKLNMKLFPPGLYPPHTDV 827
            +++ + + A+LRR+ VAD+VE + V T+PFY +  G  STLYKL MKL+P       + +
Sbjct: 1236 EDDAKMVVAKLRRVRVADVVEKIEVCTVPFY-NSNGRVSTLYKLQMKLYPQDQL--ESGL 1292

Query: 826  SLEDCRSILSTTFVDAMDVAIARHLDLISKISDIDVVSXXXXXXXXXXXXXGSKSASGED 647
            ++++C++ L T FV+AM+ AI +HLDL+ KI++I  V               S+S   + 
Sbjct: 1293 TIDECQATLRTVFVEAMEHAIEKHLDLLYKINEIRAVKIEDTEGSLLNGDEESQSRHADG 1352

Query: 646  NDTXXXXXXXXXXXXXXXXXXXXXXXXXXXXGQKRKNQTRXXXXXXXXXEKKISVELDDE 467
             DT                              +  + T          E+      +D 
Sbjct: 1353 GDTGTSDDDDQNDNDVDLGTDAEKMKRQEKDEMEYDDDTETEEGMGSESEESD----EDP 1408

Query: 466  TQSGFXXXXXXXXXXXXXXXEVRGDDVDAAADE-QPPKDDPGSVADEEXXXXXXXXXXXX 290
             +SG                    DD+  +  + +  KDD G+   EE            
Sbjct: 1409 AESGDDSQEADKEHTISKSETTSVDDLPYSVKKGKKSKDDRGTAKLEEKNQNEGRLDDQK 1468

Query: 289  XTKVSKTRAKTKSKTEAKFSQNFVEAKGLNFEAHFLLTDQPHILLAE 149
              ++ K R K K           VE+  L+FE H+   D+PHILLA+
Sbjct: 1469 QGQIKKRRKKLKHTIH-------VESSDLDFEIHYAFHDEPHILLAQ 1508


>ref|XP_010238655.1| PREDICTED: DNA-directed RNA polymerase I subunit rpa1 [Brachypodium
            distachyon] gi|944076924|gb|KQK12276.1| hypothetical
            protein BRADI_1g02621 [Brachypodium distachyon]
          Length = 1634

 Score =  610 bits (1574), Expect = e-171
 Identities = 357/774 (46%), Positives = 467/774 (60%), Gaps = 20/774 (2%)
 Frame = -2

Query: 2263 VHELYGADTAGRLLSIFSRLFTTFLQMHAFTCGVDDLLLKGESDMDREAMLEKSEAQSED 2084
            V+ELYGA+TAGRLLSIFSRLFT FLQ+H FTCG+DDLLL  ESD  R   L  SE  SE+
Sbjct: 759  VYELYGAETAGRLLSIFSRLFTLFLQLHGFTCGIDDLLLFQESDKQRTETLMTSEKCSEE 818

Query: 2083 VHCRFTGAKCGNIDPLDLRKEIEKVLRNNGESATARLDRMMSNALNVLTSEVNKALFPAG 1904
            VH +FT A   + DPL L+ E+EKV+R  GESAT  LD+MM +ALN L SEVN+ LFP G
Sbjct: 819  VHRKFTCAGDYDEDPLKLQMEVEKVVRRIGESATDTLDKMMLSALNGLQSEVNRRLFPYG 878

Query: 1903 LQKPFPGNCLSLMTTTGAKGGLVNLTQISSLLGQQELEGKRVPRMISGKTLPCFPPWDTS 1724
            LQKPFP NCL+LMT TGAKGG VN+TQI+SLLG Q+LEG RVPRMISGK+LPCFPPWDTS
Sbjct: 879  LQKPFPRNCLTLMTATGAKGGEVNMTQITSLLGSQDLEGARVPRMISGKSLPCFPPWDTS 938

Query: 1723 CRAGGFIGDRFLTALRPQEYYFHCMAGRDGLVDTAIKTARSGYLQRCLIKNLESLKVCYD 1544
             RAGGF+ DRFLT LRPQEYYFHCMAGR+GL+DTA+KT+RSGYLQRCL+K+LESL V YD
Sbjct: 939  SRAGGFVSDRFLTGLRPQEYYFHCMAGRNGLIDTAVKTSRSGYLQRCLVKSLESLFVAYD 998

Query: 1543 YTVRDADGSVVQFAYGEDGVDVLKTSYIAEAQ------VLFNNQRVVLESLGSQLGDAHL 1382
            +TVR+ DGS+VQF YGEDGVDV K++++ + Q       L +N++ VL+ LG   GD H+
Sbjct: 999  HTVRNVDGSIVQFRYGEDGVDVHKSNFLDKFQDKDMFKELADNRKAVLDRLGRYTGD-HM 1057

Query: 1381 SKSNRFIKELPDSLREIATSLACQLTHLPKNERGHRHQIXXXXXXXXXXXXXXXXLAEPG 1202
            S  + +I ELP++L + AT        L K++   RH I                L +PG
Sbjct: 1058 SLQSNYITELPEALTDRATKF------LSKDKGRCRHDIKEDELMNLLKAKYLASLVDPG 1111

Query: 1201 EPVGVIAAQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILMSAKEAIRTPVMTCPL 1022
            E VGVI AQS+GEPSTQMTLNTFH AGR ++NVTLG+PR+QEILM A   I TPVM CPL
Sbjct: 1112 EAVGVILAQSLGEPSTQMTLNTFHFAGRSDVNVTLGMPRIQEILMKASANIATPVMMCPL 1171

Query: 1021 LDGMTKEEGEGLAARLRRICVADIVESMVVSTLPFYIHRRGTSSTLYKLNMKLFPPGLYP 842
            L+ +T ++ E LAA+LR + + DIVE + V T+PFY +  G  S+LYKL +KLFPP  YP
Sbjct: 1172 LEDVTWDDAERLAAKLRGVRLVDIVEGIEVCTVPFY-NNNGYVSSLYKLQIKLFPPERYP 1230

Query: 841  PHTDVSLEDCRSILSTTFVDAMDVAIARHLDLISKISDIDVVSXXXXXXXXXXXXXGSKS 662
            P +++++++C++ L T FVD+M+ AI +HL L+ ++S I                    S
Sbjct: 1231 PQSELTVDECQTALRTVFVDSMEFAIEKHLKLLYRVSGIQ----------ETRVKDTESS 1280

Query: 661  ASGEDNDTXXXXXXXXXXXXXXXXXXXXXXXXXXXXGQKRKNQTRXXXXXXXXXEKKISV 482
             S    ++                             +KR+             EK+  +
Sbjct: 1281 LSEGPEESEGRPIDGEESGASDGDNENEDDLGTDGEKRKRQENDEMEYDGEDDVEKEDGM 1340

Query: 481  ELDDETQSGFXXXXXXXXXXXXXXXEVRGDDVDAAADEQPPKDDPGSVADEEXXXXXXXX 302
              D E ++ +               E+  DD    +  +   +D G V+D          
Sbjct: 1341 NSDPEEETKY---------------ELDNDDDLVESGGESEVNDEGHVSDSSNKVGKLEG 1385

Query: 301  XXXXXTKVSKTRAKTKSKTEAKFSQNFVEAKGLNFEAHFLLTD---QPHILL-------- 155
                     +     ++  E K +Q  V+   L+   H   T    + H LL        
Sbjct: 1386 KLAAGKLKKEVNKTVENLEEQKQAQKGVKRTKLSRTVHVESTGLNFEVHYLLLHNEPHIL 1445

Query: 154  -AEIAQATAKRVYFRECKD--IDRCSVVEPKRSTDRVALQTAGVNFMAFWDLQD 2
             ++IAQ T + ++ +   +  ID+C VV P++  D   L+TAGVNF  FW LQD
Sbjct: 1446 LSQIAQKTLRSLFVKGSHNNKIDQCKVVWPEKKGDFRGLKTAGVNFDVFWGLQD 1499


>ref|XP_002526734.1| DNA-directed RNA polymerase I largest subunit, putative [Ricinus
            communis] gi|223533923|gb|EEF35648.1| DNA-directed RNA
            polymerase I largest subunit, putative [Ricinus communis]
          Length = 1686

 Score =  602 bits (1551), Expect = e-169
 Identities = 364/780 (46%), Positives = 455/780 (58%), Gaps = 26/780 (3%)
 Frame = -2

Query: 2263 VHELYGADTAGRLLSIFSRLFTTFLQMHAFTCGVDDLLLKGESDMDREAMLEKSEAQSED 2084
            VHEL G+ TAG LLS+ SRLFT +LQMH FTCGVDDLL+    D +R+  LE  E   E 
Sbjct: 800  VHELLGSHTAGILLSVLSRLFTAYLQMHGFTCGVDDLLILTNKDEERKKQLEWCEKSGEA 859

Query: 2083 VHCRFTGAKCGNI--DPLDLRKEIEKVLRNNGESATARLDRMMSNALNVLTSE-VNKALF 1913
            VH  F G K   I  DP+ ++  IEK +R++G+SA A LDR MSN LN  TS  V   L 
Sbjct: 860  VHRNFIGIKDEKIKIDPVAMQLNIEKTIRSDGDSALAYLDRQMSNELNTKTSSGVISNLL 919

Query: 1912 PAGLQKPFPGNCLSLMTTTGAKGGLVNLTQISSLLGQQELEGKRVPRMISGKTLPCFPPW 1733
              GL KP   NC+SLMTT+GAKG  VN  QISS LGQQELEGKRVPRM+SGKTLPCF PW
Sbjct: 920  SDGLLKPSGKNCISLMTTSGAKGSKVNFQQISSFLGQQELEGKRVPRMVSGKTLPCFHPW 979

Query: 1732 DTSCRAGGFIGDRFLTALRPQEYYFHCMAGRDGLVDTAIKTARSGYLQRCLIKNLESLKV 1553
            D + R+GG+I DRFLT LRPQEYYFHCMAGR+GLVDTA+KT+RSGYLQRCLIKNLE LK+
Sbjct: 980  DWAARSGGYITDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKI 1039

Query: 1552 CYDYTVRDADGSVVQFAYGEDGVDVLKTSYIAEAQVLFNNQRVVLESLGSQLGDAHLSKS 1373
             YD+TVRDADGSVVQF YGEDGVDV +TS+IA+ + L  NQ ++ +  G QLG       
Sbjct: 1040 GYDHTVRDADGSVVQFYYGEDGVDVHQTSFIAKFKELALNQDMIYKRSGGQLG-----AF 1094

Query: 1372 NRFIKELPDSLREIATSLACQLTHLPKNERGHRHQIXXXXXXXXXXXXXXXXLAEPGEPV 1193
            N +I ELP++L+E A       + +    R   + +                LA+PGEPV
Sbjct: 1095 NSYISELPEALKEKADRFLDDFSIMG---RIASNLVKREDLYNLMKQKFLLSLAQPGEPV 1151

Query: 1192 GVIAAQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILMSAKEAIRTPVMTCPLLDG 1013
            GV+AAQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILM+A   I+TP+MTCPL +G
Sbjct: 1152 GVLAAQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILMTASIDIKTPIMTCPLQEG 1211

Query: 1012 MTKEEGEGLAARLRRICVADIVESMVVSTLPFYIHRRGTSSTLYKLNMKLFPPGLYPPHT 833
             T E+ + LA +LR++ VADIVESM VS +PF I   G    +YKL MKL+ P  YP + 
Sbjct: 1212 RTNEDADHLADKLRKVTVADIVESMEVSVVPFAIQDGGV-CRIYKLKMKLYRPAHYPQYA 1270

Query: 832  DVSLEDCRSILSTTFVDAMDVAIARHLDLISKISDIDVVSXXXXXXXXXXXXXGSKSASG 653
            ++S+ED    L   F+  ++ AI  H+ L+S+IS I                  S+++  
Sbjct: 1271 NISVEDWEETLEVVFLRELEDAIQNHMFLLSRISGI----------KDFLPESRSRASGE 1320

Query: 652  EDNDTXXXXXXXXXXXXXXXXXXXXXXXXXXXXGQKRKNQTRXXXXXXXXXEKKIS--VE 479
             D D                              QKRK Q           E++++    
Sbjct: 1321 ADEDVAGDMSHREERDDDNDDDDGERADDLGLDAQKRKLQATDEMDYDDGFEEELNEGES 1380

Query: 478  LDDETQSGFXXXXXXXXXXXXXXXEVRGDDVDAAADEQPPKDDPGSVADEEXXXXXXXXX 299
               E +SGF               +V    +D  A E  P   P     ++         
Sbjct: 1381 TASEEESGFESEIDQGDNETEISNDVM---LDNEASETLPLRKPSKPKSKKKAAESPSHG 1437

Query: 298  XXXXTKVSKTRAKTKSKTEAKFSQN-FVEAKGLNFEAHFLLTDQPHILLAEIAQATAKRV 122
                 K  K +AK KS+    F +  FVEA+ ++FE HF  T++PHILLAEIAQ TAK+V
Sbjct: 1438 EKSKDKKKKPKAKRKSRISKDFDRAIFVEARKMHFEVHFKFTNEPHILLAEIAQKTAKKV 1497

Query: 121  YFRECKDIDRCSVVEPKRS---------TDRV-----------ALQTAGVNFMAFWDLQD 2
            Y +    I++C V + K S          +RV           AL   GV+F  FW +QD
Sbjct: 1498 YIQNPGKIEQCRVTDCKESQVIYYGKDPKERVDLKPDVKEKVPALHATGVDFNTFWKMQD 1557


>ref|XP_010666878.1| PREDICTED: DNA-directed RNA polymerase I subunit rpa1 [Beta vulgaris
            subsp. vulgaris] gi|870842325|gb|KMS95772.1| hypothetical
            protein BVRB_005160 [Beta vulgaris subsp. vulgaris]
          Length = 1702

 Score =  600 bits (1546), Expect = e-168
 Identities = 357/776 (46%), Positives = 457/776 (58%), Gaps = 22/776 (2%)
 Frame = -2

Query: 2263 VHELYGADTAGRLLSIFSRLFTTFLQMHAFTCGVDDLLLKGESDMDREAMLEKSEAQSED 2084
            + E+YGAD AG LLS+ SR+ T FLQM+ FTCGV DLLL    D  R+ +L+      ++
Sbjct: 825  MQEMYGADAAGNLLSVLSRVLTAFLQMNGFTCGVHDLLLVQSYDNQRKQLLDFCLNCGKE 884

Query: 2083 VHCRFTGAKCGNIDPLDLRKEIEKVLRNNGESATARLDRMMSNALNVLTSEVNKALFPAG 1904
            VH +F G +  ++D  +++ EIEK +R NG+SA A LD MM + LN L+S V K LFP G
Sbjct: 885  VHQQFIGREKEHLDFSEMQIEIEKAIRRNGDSAIALLDGMMRSKLNTLSSAVTK-LFPEG 943

Query: 1903 LQKPFPGNCLSLMTTTGAKGGLVNLTQISSLLGQQELEGKRVPRMISGKTLPCFPPWDTS 1724
            L +PF  NCLSLMT +GAKGG  N  QIS LLGQQELEGKRVPRM+SGKTLPCF PWD+S
Sbjct: 944  LIRPFRNNCLSLMTLSGAKGGTFNFQQISLLLGQQELEGKRVPRMVSGKTLPCFVPWDSS 1003

Query: 1723 CRAGGFIGDRFLTALRPQEYYFHCMAGRDGLVDTAIKTARSGYLQRCLIKNLESLKVCYD 1544
             RAGGFI DR+LT LRPQE+YFHCMAGR+GLVDTA+KT+RSGYLQRCLIKNLE L V YD
Sbjct: 1004 ARAGGFISDRYLTGLRPQEFYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLTVHYD 1063

Query: 1543 YTVRDADGSVVQFAYGEDGVDVLKTSYIAEAQVLFNNQ-RVVLESLGSQLGDAHLSKSNR 1367
            YTVRDADGSV+QF YGEDGVDV + +Y+ E + L  NQ  +V ++  SQ+  A +SK   
Sbjct: 1064 YTVRDADGSVIQFRYGEDGVDVHQKNYMQEFEALALNQPLIVSKNPLSQIDGACVSKYIE 1123

Query: 1366 FIKELPDSLREIATSL------ACQLTHLPKNERGHRHQIXXXXXXXXXXXXXXXXLAEP 1205
               E PD L + A         A  L H    +R                      LA+P
Sbjct: 1124 EDNEFPDKLAKEAKDFYNNHASAMNLPHTTPKDR--------LNFLKLVKNKYYMSLAQP 1175

Query: 1204 GEPVGVIAAQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILMSAKEAIRTPVMTCP 1025
            GEPVG+IAAQS+GEPSTQMTLNTFH AGRGEMNVTLGIPRLQEILM+A  AI+TP MTCP
Sbjct: 1176 GEPVGIIAAQSIGEPSTQMTLNTFHHAGRGEMNVTLGIPRLQEILMTASSAIKTPTMTCP 1235

Query: 1024 LLDGMTKEEGEGLAARLRRICVADIVESMVVSTLPFYIHRRGTSSTLYKLNMKLFPPGLY 845
            LL    K++ E LAA+L+R+ VAD++E++ VS +PF I +    S +YKL +KL+ P LY
Sbjct: 1236 LLKCKAKDDAEQLAAKLKRVVVADLIENLEVSIVPFAIEKHEICS-IYKLKIKLYAPELY 1294

Query: 844  PPHTDVSLEDCRSILSTTFVDAMDVAIARHLDLISKISDIDVVSXXXXXXXXXXXXXGSK 665
            P HTD++LEDC + L   ++  ++ AI  HL L+S+I  I   +             GSK
Sbjct: 1295 PSHTDITLEDCHNTLLNEYLKELEAAIKSHLLLLSRICGIKSDALPKGSDGMNGDDSGSK 1354

Query: 664  SASGEDNDTXXXXXXXXXXXXXXXXXXXXXXXXXXXXGQKRKNQTRXXXXXXXXXEKKIS 485
            + S  D D                                  +            E +  
Sbjct: 1355 TRSENDEDDDDDDDDDDEGADDFGSNAQKRKQRVTDEVDYEDDSEEEVEEGKLVAEGEHE 1414

Query: 484  VELDDETQSGFXXXXXXXXXXXXXXXEVRGD-DVDAAADEQPPKDDPGSVADEEXXXXXX 308
            VELD+E + G                   G+ +V+   DE+  KD  G  + E+      
Sbjct: 1415 VELDEEVEEG--------------KCVAEGEPEVELDEDEEETKDADGEESVEQDVPETP 1460

Query: 307  XXXXXXXTKVSKTRAKTKSKTEAKFSQNFVEAKGLNFEAHFLLTDQPHILLAEIAQATAK 128
                    K  +  AK +  +E   + + V   GL FE HF LT++PHILL++IA+ TAK
Sbjct: 1461 SGPLSQQQK--RPEAKQRKFSEKDLTVH-VACDGLFFEVHFKLTNEPHILLSKIAERTAK 1517

Query: 127  RVYFRECKDIDRCSVVE--------------PKRSTDRVALQTAGVNFMAFWDLQD 2
            +V+ +    I++C +VE               K    R ALQTAGV+F AFWD+QD
Sbjct: 1518 KVHVKSAGKIEQCKLVELHLDDSGKGGIPMLRKGKESRPALQTAGVDFTAFWDMQD 1573


>ref|XP_010673196.1| PREDICTED: DNA-directed RNA polymerase I subunit rpa1-like isoform X1
            [Beta vulgaris subsp. vulgaris]
            gi|870869996|gb|KMT20741.1| hypothetical protein
            BVRB_1g007130 isoform B [Beta vulgaris subsp. vulgaris]
          Length = 1668

 Score =  598 bits (1542), Expect = e-168
 Identities = 353/774 (45%), Positives = 453/774 (58%), Gaps = 20/774 (2%)
 Frame = -2

Query: 2263 VHELYGADTAGRLLSIFSRLFTTFLQM-HAFTCGVDDLLLKGESDMDREAMLEKSEAQSE 2087
            + E+YG+D AG LLS   R+ T FLQM H FTCG+ DLLL    +  R+ +L+      +
Sbjct: 817  IQEMYGSDAAGNLLSALGRVLTAFLQMMHGFTCGIKDLLLVQPYEEQRKKLLDACLDSGK 876

Query: 2086 DVHCRFTGAKCGNIDPLDLRKEIEKVLRNNGESATARLDRMMSNALNVLTSEVNKALFPA 1907
             VH +F G +  ++D L+++ E+EK +R+NGES +  LD MM + LN L+S V K LFP 
Sbjct: 877  QVHQQFIGREKEHLDFLEMQIEVEKAIRHNGESGSVFLDGMMRSKLNTLSSAVTK-LFPE 935

Query: 1906 GLQKPFPGNCLSLMTTTGAKGGLVNLTQISSLLGQQELEGKRVPRMISGKTLPCFPPWDT 1727
            GL KPFP NCLSLMT +GAKG + N  QIS LLGQQELEGKRVPRM+SGKTLPCF PWD+
Sbjct: 936  GLVKPFPKNCLSLMTLSGAKGSIFNFQQISLLLGQQELEGKRVPRMVSGKTLPCFVPWDS 995

Query: 1726 SCRAGGFIGDRFLTALRPQEYYFHCMAGRDGLVDTAIKTARSGYLQRCLIKNLESLKVCY 1547
            S RAGGFIGDR+LT LRPQE+YFHCMAGR+GLVDTA+KT+RSGYLQRCLIKNLE L VCY
Sbjct: 996  SARAGGFIGDRYLTGLRPQEFYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLSVCY 1055

Query: 1546 DYTVRDADGSVVQFAYGEDGVDVLKTSYIAEAQVL-FNNQRVVLESLGSQLGDAHLSK-- 1376
            DYTVRDADGS++QF YGEDGVDV + +Y+ E + L  N Q +V      Q+ DA +SK  
Sbjct: 1056 DYTVRDADGSIIQFRYGEDGVDVHQKNYLQEFEALALNQQLIVSRHPLCQIDDACISKYI 1115

Query: 1375 --SNRFIKELPDSLREIATSLACQLTHLPKNERGHRHQIXXXXXXXXXXXXXXXXLAEPG 1202
               N F  +L    +E   + A  L + P N                        LA PG
Sbjct: 1116 EEDNEFPAQLAREAKEFCNNYASHLNN-PLN------------FIKLVKNKYYMSLAHPG 1162

Query: 1201 EPVGVIAAQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILMSAKEAIRTPVMTCPL 1022
            EPVG+IAAQS+GEPSTQMTLNTFH AGRGEMNVTLGIPRL EILM+A + I+TP M CPL
Sbjct: 1163 EPVGIIAAQSIGEPSTQMTLNTFHHAGRGEMNVTLGIPRLLEILMNAAKFIKTPTMMCPL 1222

Query: 1021 LDGMTKEEGEGLAARLRRICVADIVESMVVSTLPFYIHRRGTSSTLYKLNMKLFPPGLYP 842
            L   TK++ E LAA+L+RI VAD+++ M VS +PF I +    S +YKL +KL+ P LYP
Sbjct: 1223 LKCKTKDDIECLAAKLKRITVADLIDKMEVSVVPFAIEKHEICS-IYKLKVKLYDPELYP 1281

Query: 841  PHTDVSLEDCRSILSTTFVDAMDVAIARHLDLISKISDIDVVSXXXXXXXXXXXXXGSKS 662
             HTD++LEDC++ L   FV  M+ AI  HL L+SKIS I+  S              S S
Sbjct: 1282 RHTDITLEDCQNALLNEFVKEMEAAIKAHLLLLSKISGINSESQSKGSDDMDKDGVESGS 1341

Query: 661  ASGEDNDTXXXXXXXXXXXXXXXXXXXXXXXXXXXXGQKRKNQTRXXXXXXXXXEKKISV 482
             + E++ +                             +KRK + +              V
Sbjct: 1342 QTDEEDSS------------DDDDDNEERGACVGSKVRKRKRKAKDGMYYEDDP----EV 1385

Query: 481  ELDDETQSGFXXXXXXXXXXXXXXXEVRGDDVDAAADEQPPKDDPGSVADEEXXXXXXXX 302
            E ++E                     +   + D    E   +D+    + EE        
Sbjct: 1386 EAEEE-------------------KLISEHEYDEEVVENENEDEDKEESMEEDVTETHSG 1426

Query: 301  XXXXXTKVSKTRAKTKSKTEAKFSQNFVEAKGLNFEAHFLLTDQPHILLAEIAQATAKRV 122
                  +  K + K + K++ K    +V   GL FE HF +T+QPHILL+++A+  AK+V
Sbjct: 1427 PPDSQERKEKPKVKERKKSD-KNKAIYVACDGLCFEVHFKITNQPHILLSQMAEKAAKKV 1485

Query: 121  YFRECKDIDRCSVVE--------------PKRSTDRVALQTAGVNFMAFWDLQD 2
            Y +    I+RC VVE               K    R ALQTAGV+F AFWD+QD
Sbjct: 1486 YVKSAGKIERCEVVEVHLDDSGKGGIPMLRKGKESRPALQTAGVDFPAFWDMQD 1539


>gb|KNA08287.1| hypothetical protein SOVF_163960 [Spinacia oleracea]
          Length = 1677

 Score =  597 bits (1540), Expect = e-167
 Identities = 357/773 (46%), Positives = 453/773 (58%), Gaps = 19/773 (2%)
 Frame = -2

Query: 2263 VHELYGADTAGRLLSIFSRLFTTFLQMHAFTCGVDDLLLKGESDMDREAMLEKSEAQSED 2084
            V E+YGA+ AG LLS+ SR+ T FLQMH FTCGV DLL++   D+ R ++L+      E+
Sbjct: 821  VQEMYGANAAGNLLSVLSRVLTAFLQMHGFTCGVQDLLMEQPYDIKRRSLLDVCLNCGEE 880

Query: 2083 VHCRFTGAKCGNIDPLDLRKEIEKVLRNNGESATARLDRMMSNALNVLTSEVNKALFPAG 1904
            VH +F G +  ++D L ++ EIEK +R NGES  A LD MM + LN L+S+V K LFP G
Sbjct: 881  VHQQFIGHEKKHLDFLGMQIEIEKAIRRNGESGIALLDGMMRSKLNTLSSKVTK-LFPEG 939

Query: 1903 LQKPFPGNCLSLMTTTGAKGGLVNLTQISSLLGQQELEGKRVPRMISGKTLPCFPPWDTS 1724
            L KPF  NCLSLMT +GAKGG  N  QIS LLGQQELEGKRVPRM+SGKTLPCF PWD S
Sbjct: 940  LIKPFRKNCLSLMTLSGAKGGTFNFQQISLLLGQQELEGKRVPRMVSGKTLPCFVPWDCS 999

Query: 1723 CRAGGFIGDRFLTALRPQEYYFHCMAGRDGLVDTAIKTARSGYLQRCLIKNLESLKVCYD 1544
             RAGGFI DR+LT LRPQE+YFHCMAGR+GLVDTA+KT+RSGYLQRCLIKNLE L V YD
Sbjct: 1000 ARAGGFISDRYLTGLRPQEFYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLTVQYD 1059

Query: 1543 YTVRDADGSVVQFAYGEDGVDVLKTSYIAEAQVLFNNQR-VVLESLGSQLGDAHLS---- 1379
            YTVRDADGS+VQF YGEDGVDV + +Y+ E + L  NQ  +V +S  S   DA LS    
Sbjct: 1060 YTVRDADGSIVQFRYGEDGVDVHQKNYMQEFEALALNQSLIVSKSPLSHTNDACLSTYVE 1119

Query: 1378 KSNRFIKELPDSLREIATSLACQLTHLPKNERGHRHQIXXXXXXXXXXXXXXXXLAEPGE 1199
            + N    +L    +E   + A          +GH +                  LA+PGE
Sbjct: 1120 EDNEVPNQLAKEAKEFFYNHALATDFQRTQPKGHLN------FSKLVKNKYYKSLAQPGE 1173

Query: 1198 PVGVIAAQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILMSAKEAIRTPVMTCPLL 1019
            PVG+IAAQSVGEPSTQMTLNTFH AGRGEMNVTLGIPRLQEILM+A +AI+TP MTCPLL
Sbjct: 1174 PVGIIAAQSVGEPSTQMTLNTFHHAGRGEMNVTLGIPRLQEILMTASKAIKTPTMTCPLL 1233

Query: 1018 DGMTKEEGEGLAARLRRICVADIVESMVVSTLPFYIHRRGTSSTLYKLNMKLFPPGLYPP 839
                K++ E LAA+L+RI +AD++E M VS +PF I +    S +YKL +KL+ P LYPP
Sbjct: 1234 KCKAKDDAEQLAAKLKRIKIADLIEKMEVSVVPFAIKKHEICS-IYKLKIKLYDPELYPP 1292

Query: 838  HTDVSLEDCRSILSTTFVDAMDVAIARHLDLISKISDIDVVSXXXXXXXXXXXXXGSKSA 659
            HTD++LEDC + L   ++  M+ A+  HL L+S+I  I   S             GSKS 
Sbjct: 1293 HTDITLEDCHNTLIHDYMREMEAALKSHLLLLSRICGIKSDSQPKDSDEMDEAGFGSKSQ 1352

Query: 658  SGEDNDTXXXXXXXXXXXXXXXXXXXXXXXXXXXXGQKRKNQTRXXXXXXXXXEKKISVE 479
            +  D+D                              +KRK QT                +
Sbjct: 1353 TEGDDD-----------GGDDDDEDDEEGGDQSSKTRKRKEQTTDEVDYEG--------D 1393

Query: 478  LDDETQSGFXXXXXXXXXXXXXXXEVRGDDVDAAADEQPPKDDPGSVADEEXXXXXXXXX 299
             +DE + G                  R ++V+   D+   +D+     DE+         
Sbjct: 1394 SEDEVEEG-------------NHVSERENEVELGEDKDEDEDE-----DEDGKESLEQPS 1435

Query: 298  XXXXTKVSKTRAKTKSKTEAKFSQNFVEAKGLNFEAHFLLTDQPHILLAEIAQATAKRVY 119
                 +  +     + KT       +V    L FE HF L+ + HIL+A+IA+ TAK+VY
Sbjct: 1436 GPDSQEQKEKPETRQRKTSDDDKAIYVNCDELYFEVHFKLSGESHILMAQIAEKTAKKVY 1495

Query: 118  FRECKDIDRCSVVE--------------PKRSTDRVALQTAGVNFMAFWDLQD 2
             +    I++C VVE               K    R ALQTAGV+F AFW++QD
Sbjct: 1496 VKTAGKIEQCKVVELHLDDSGKGGIPMLRKGKESRAALQTAGVDFAAFWNMQD 1548