BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Ophiopogon21_contig00006372
         (558 letters)

Database: ./nr 
           77,306,371 sequences; 28,104,191,420 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_008808794.1| PREDICTED: RNA polymerase sigma factor sigA ...   107   2e-45
ref|XP_010910226.1| PREDICTED: RNA polymerase sigma factor sigA ...   100   2e-40
ref|XP_010910227.1| PREDICTED: RNA polymerase sigma factor sigA ...   100   2e-40
ref|XP_010910228.1| PREDICTED: RNA polymerase sigma factor sigA ...   100   2e-40
ref|XP_009397520.1| PREDICTED: RNA polymerase sigma factor sigA-...    99   5e-38
ref|XP_009382828.1| PREDICTED: RNA polymerase sigma factor sigA-...    89   2e-35
ref|XP_010266387.1| PREDICTED: RNA polymerase sigma factor sigA-...    96   9e-34
ref|XP_010275189.1| PREDICTED: RNA polymerase sigma factor sigA-...    90   1e-31
ref|XP_011012457.1| PREDICTED: RNA polymerase sigma factor sigA ...    85   2e-28
ref|XP_002325882.1| RNA POLYMERASE SIGMA SUBUNIT 1 family protei...    86   5e-28
ref|XP_006371210.1| hypothetical protein POPTR_0019s06020g [Popu...    86   5e-28
ref|XP_002524027.1| RNA polymerase sigma factor rpoD, putative [...    81   9e-28
ref|XP_012070278.1| PREDICTED: RNA polymerase sigma factor sigA ...    86   2e-27
gb|KDO48032.1| hypothetical protein CISIN_1g010521mg [Citrus sin...    79   3e-27
gb|AKC88633.1| sigma factor [Melianthus villosus]                      84   3e-27
gb|KDO48034.1| hypothetical protein CISIN_1g010521mg [Citrus sin...    79   3e-27
gb|KDO48031.1| hypothetical protein CISIN_1g010521mg [Citrus sin...    79   3e-27
gb|KDO48035.1| hypothetical protein CISIN_1g010521mg [Citrus sin...    79   3e-27
gb|KDO48036.1| hypothetical protein CISIN_1g010521mg [Citrus sin...    79   3e-27
gb|KDO48037.1| hypothetical protein CISIN_1g010521mg [Citrus sin...    79   3e-27

>ref|XP_008808794.1| PREDICTED: RNA polymerase sigma factor sigA [Phoenix dactylifera]
           gi|672177404|ref|XP_008808795.1| PREDICTED: RNA
           polymerase sigma factor sigA [Phoenix dactylifera]
           gi|672177406|ref|XP_008808796.1| PREDICTED: RNA
           polymerase sigma factor sigA [Phoenix dactylifera]
           gi|672177408|ref|XP_008808797.1| PREDICTED: RNA
           polymerase sigma factor sigA [Phoenix dactylifera]
          Length = 508

 Score =  107 bits (267), Expect(2) = 2e-45
 Identities = 52/91 (57%), Positives = 74/91 (81%)
 Frame = -1

Query: 558 TAAVIGLSAGKRILSSSFYSSDLADRLFPVVDHGSAQFSAASTKSSVIVSRRSTHFSANV 379
           TAAVIGLS GKR+LS+SFY +DLA++LF V DHGS QFS +STK++ I ++RS++F  N+
Sbjct: 3   TAAVIGLSTGKRLLSTSFYPADLAEKLFAVPDHGSMQFSTSSTKNT-IAAKRSSNFGTNI 61

Query: 378 PADRHTVPVKAVREHVDTIAPTTTSSSWFER 286
           P++RH+  +KA++EHVDT A  +T+ +WF R
Sbjct: 62  PSNRHSQAIKALKEHVDT-AALSTADAWFRR 91



 Score =  102 bits (254), Expect(2) = 2e-45
 Identities = 54/84 (64%), Positives = 65/84 (77%), Gaps = 3/84 (3%)
 Frame = -2

Query: 248 LLLQKSMLEKQWKLSFNQMRTVVAPGETNKKPEVIRSGISARKRRTNARNKCFKHSAYMG 69
           +LLQKSMLEKQWKL F Q++TV  P E+ KK EVIRSGISARKRRT  R +CF  SAYM 
Sbjct: 110 ILLQKSMLEKQWKLPFEQIKTVDDPRESCKKTEVIRSGISARKRRTVTRRRCFNRSAYME 169

Query: 68  IVG---KGRQLRATVSPELMQTRL 6
                 +G++LR+TVSPEL+QTR+
Sbjct: 170 PFNGGEEGKELRSTVSPELLQTRV 193


>ref|XP_010910226.1| PREDICTED: RNA polymerase sigma factor sigA isoform X1 [Elaeis
           guineensis]
          Length = 593

 Score =  100 bits (250), Expect(2) = 2e-40
 Identities = 50/90 (55%), Positives = 72/90 (80%)
 Frame = -1

Query: 555 AAVIGLSAGKRILSSSFYSSDLADRLFPVVDHGSAQFSAASTKSSVIVSRRSTHFSANVP 376
           AAV GLS GKR+LS+SFY SDLA++LF V DH S QFS ASTK++ I +++S++FS N+ 
Sbjct: 89  AAVFGLSRGKRLLSTSFYPSDLAEKLFAVPDHASMQFSTASTKNT-IAAKKSSNFSTNIR 147

Query: 375 ADRHTVPVKAVREHVDTIAPTTTSSSWFER 286
           ++RH+  +KA++EHVDT A  +T+ +WF+R
Sbjct: 148 SNRHSQAIKALKEHVDTSA-LSTADTWFQR 176



 Score = 92.4 bits (228), Expect(2) = 2e-40
 Identities = 52/81 (64%), Positives = 61/81 (75%), Gaps = 3/81 (3%)
 Frame = -2

Query: 248 LLLQKSMLEKQWKLSFNQMRTVVAPGETNKKPEVIRSGISARKRRTNARNKCFKHSAYM- 72
           LLLQKSMLEKQ KL F Q++TV  P E+ KK EVIRSGISARKRRT  R  CF  +AYM 
Sbjct: 195 LLLQKSMLEKQRKLPFEQIKTVDDPRESCKKTEVIRSGISARKRRTITRMTCFNQNAYME 254

Query: 71  --GIVGKGRQLRATVSPELMQ 15
               V +G++LR+TVSPEL+Q
Sbjct: 255 PLNRVKEGKELRSTVSPELLQ 275


>ref|XP_010910227.1| PREDICTED: RNA polymerase sigma factor sigA isoform X2 [Elaeis
           guineensis]
          Length = 550

 Score =  100 bits (250), Expect(2) = 2e-40
 Identities = 50/90 (55%), Positives = 72/90 (80%)
 Frame = -1

Query: 555 AAVIGLSAGKRILSSSFYSSDLADRLFPVVDHGSAQFSAASTKSSVIVSRRSTHFSANVP 376
           AAV GLS GKR+LS+SFY SDLA++LF V DH S QFS ASTK++ I +++S++FS N+ 
Sbjct: 89  AAVFGLSRGKRLLSTSFYPSDLAEKLFAVPDHASMQFSTASTKNT-IAAKKSSNFSTNIR 147

Query: 375 ADRHTVPVKAVREHVDTIAPTTTSSSWFER 286
           ++RH+  +KA++EHVDT A  +T+ +WF+R
Sbjct: 148 SNRHSQAIKALKEHVDTSA-LSTADTWFQR 176



 Score = 92.4 bits (228), Expect(2) = 2e-40
 Identities = 52/81 (64%), Positives = 61/81 (75%), Gaps = 3/81 (3%)
 Frame = -2

Query: 248 LLLQKSMLEKQWKLSFNQMRTVVAPGETNKKPEVIRSGISARKRRTNARNKCFKHSAYM- 72
           LLLQKSMLEKQ KL F Q++TV  P E+ KK EVIRSGISARKRRT  R  CF  +AYM 
Sbjct: 195 LLLQKSMLEKQRKLPFEQIKTVDDPRESCKKTEVIRSGISARKRRTITRMTCFNQNAYME 254

Query: 71  --GIVGKGRQLRATVSPELMQ 15
               V +G++LR+TVSPEL+Q
Sbjct: 255 PLNRVKEGKELRSTVSPELLQ 275


>ref|XP_010910228.1| PREDICTED: RNA polymerase sigma factor sigA isoform X3 [Elaeis
           guineensis] gi|743886771|ref|XP_010910229.1| PREDICTED:
           RNA polymerase sigma factor sigA isoform X3 [Elaeis
           guineensis] gi|743886775|ref|XP_010910230.1| PREDICTED:
           RNA polymerase sigma factor sigA isoform X3 [Elaeis
           guineensis] gi|743886779|ref|XP_010910231.1| PREDICTED:
           RNA polymerase sigma factor sigA isoform X3 [Elaeis
           guineensis] gi|743886783|ref|XP_010910232.1| PREDICTED:
           RNA polymerase sigma factor sigA isoform X3 [Elaeis
           guineensis] gi|743886789|ref|XP_010910234.1| PREDICTED:
           RNA polymerase sigma factor sigA isoform X3 [Elaeis
           guineensis] gi|743886793|ref|XP_010910235.1| PREDICTED:
           RNA polymerase sigma factor sigA isoform X3 [Elaeis
           guineensis] gi|743886797|ref|XP_010910236.1| PREDICTED:
           RNA polymerase sigma factor sigA isoform X3 [Elaeis
           guineensis]
          Length = 508

 Score =  100 bits (250), Expect(2) = 2e-40
 Identities = 50/90 (55%), Positives = 72/90 (80%)
 Frame = -1

Query: 555 AAVIGLSAGKRILSSSFYSSDLADRLFPVVDHGSAQFSAASTKSSVIVSRRSTHFSANVP 376
           AAV GLS GKR+LS+SFY SDLA++LF V DH S QFS ASTK++ I +++S++FS N+ 
Sbjct: 4   AAVFGLSRGKRLLSTSFYPSDLAEKLFAVPDHASMQFSTASTKNT-IAAKKSSNFSTNIR 62

Query: 375 ADRHTVPVKAVREHVDTIAPTTTSSSWFER 286
           ++RH+  +KA++EHVDT A  +T+ +WF+R
Sbjct: 63  SNRHSQAIKALKEHVDTSA-LSTADTWFQR 91



 Score = 92.4 bits (228), Expect(2) = 2e-40
 Identities = 52/81 (64%), Positives = 61/81 (75%), Gaps = 3/81 (3%)
 Frame = -2

Query: 248 LLLQKSMLEKQWKLSFNQMRTVVAPGETNKKPEVIRSGISARKRRTNARNKCFKHSAYM- 72
           LLLQKSMLEKQ KL F Q++TV  P E+ KK EVIRSGISARKRRT  R  CF  +AYM 
Sbjct: 110 LLLQKSMLEKQRKLPFEQIKTVDDPRESCKKTEVIRSGISARKRRTITRMTCFNQNAYME 169

Query: 71  --GIVGKGRQLRATVSPELMQ 15
               V +G++LR+TVSPEL+Q
Sbjct: 170 PLNRVKEGKELRSTVSPELLQ 190


>ref|XP_009397520.1| PREDICTED: RNA polymerase sigma factor sigA-like [Musa acuminata
           subsp. malaccensis] gi|694997088|ref|XP_009397527.1|
           PREDICTED: RNA polymerase sigma factor sigA-like [Musa
           acuminata subsp. malaccensis]
           gi|694997090|ref|XP_009397536.1| PREDICTED: RNA
           polymerase sigma factor sigA-like [Musa acuminata subsp.
           malaccensis] gi|694997092|ref|XP_009397544.1| PREDICTED:
           RNA polymerase sigma factor sigA-like [Musa acuminata
           subsp. malaccensis]
          Length = 498

 Score = 99.0 bits (245), Expect(2) = 5e-38
 Identities = 52/91 (57%), Positives = 67/91 (73%)
 Frame = -1

Query: 558 TAAVIGLSAGKRILSSSFYSSDLADRLFPVVDHGSAQFSAASTKSSVIVSRRSTHFSANV 379
           TAAVIGL  GKR+LSSSF  +DL ++LF V DHGS  FS  STK + IV+++S+HF +NV
Sbjct: 4   TAAVIGLHTGKRLLSSSFCQTDLTEKLFSVPDHGSLPFSGGSTKCT-IVAKKSSHFGSNV 62

Query: 378 PADRHTVPVKAVREHVDTIAPTTTSSSWFER 286
           P  RH   +KA+RE V+T AP +TS +W ER
Sbjct: 63  PPTRHIPTIKALRERVNTSAP-STSDTWSER 92



 Score = 85.9 bits (211), Expect(2) = 5e-38
 Identities = 43/82 (52%), Positives = 59/82 (71%)
 Frame = -2

Query: 248 LLLQKSMLEKQWKLSFNQMRTVVAPGETNKKPEVIRSGISARKRRTNARNKCFKHSAYMG 69
           +LLQKSMLEKQW+L F QM TVVAP  + + PE+ RSGISAR+RRT +  KCF H A + 
Sbjct: 103 ILLQKSMLEKQWELPFTQMTTVVAPENSCQMPEITRSGISARERRTISSRKCFSHKANLV 162

Query: 68  IVGKGRQLRATVSPELMQTRLT 3
              + +QL  +VS EL+++ ++
Sbjct: 163 PSSRVKQLHPSVSRELLKSDIS 184


>ref|XP_009382828.1| PREDICTED: RNA polymerase sigma factor sigA-like [Musa acuminata
           subsp. malaccensis]
          Length = 491

 Score = 89.4 bits (220), Expect(2) = 2e-35
 Identities = 45/79 (56%), Positives = 55/79 (69%)
 Frame = -2

Query: 248 LLLQKSMLEKQWKLSFNQMRTVVAPGETNKKPEVIRSGISARKRRTNARNKCFKHSAYMG 69
           +LLQKSMLEKQW+L F QM TV APG   + PE+ RSGISAR+RR  +R KC  H   M 
Sbjct: 96  ILLQKSMLEKQWELPFTQMTTVAAPGNGCRVPEIARSGISARERRMISRRKCIGHRDAMA 155

Query: 68  IVGKGRQLRATVSPELMQT 12
              + RQLR+ VSPEL+ +
Sbjct: 156 PASRVRQLRSCVSPELLNS 174



 Score = 86.7 bits (213), Expect(2) = 2e-35
 Identities = 42/84 (50%), Positives = 62/84 (73%)
 Frame = -1

Query: 558 TAAVIGLSAGKRILSSSFYSSDLADRLFPVVDHGSAQFSAASTKSSVIVSRRSTHFSANV 379
           T+AV+GLS GKR+L+SSF  +DLA++LFP++D  +  F  ASTK SV+V+++ + F  N 
Sbjct: 4   TSAVVGLSTGKRLLTSSFCPTDLAEKLFPILDQTTLPFPTASTK-SVVVAQKPSPFRPNA 62

Query: 378 PADRHTVPVKAVREHVDTIAPTTT 307
           P  RH   +KA++EHV T+AP+ T
Sbjct: 63  PPTRHVPIIKALKEHVHTLAPSPT 86


>ref|XP_010266387.1| PREDICTED: RNA polymerase sigma factor sigA-like [Nelumbo nucifera]
          Length = 506

 Score = 96.3 bits (238), Expect(2) = 9e-34
 Identities = 45/92 (48%), Positives = 70/92 (76%)
 Frame = -1

Query: 558 TAAVIGLSAGKRILSSSFYSSDLADRLFPVVDHGSAQFSAASTKSSVIVSRRSTHFSANV 379
           TAAVIGLSAGKR+L+S+FY SD+ DRL  V DHG AQ+ A S K +VI++R+S++F  + 
Sbjct: 3   TAAVIGLSAGKRLLNSTFYYSDVTDRLLSVYDHGLAQYQATSAK-NVIIARKSSNFGDSF 61

Query: 378 PADRHTVPVKAVREHVDTIAPTTTSSSWFERS 283
           P+++H   ++A++EHV+T++  +T+  W + S
Sbjct: 62  PSNQHIQSIRALKEHVNTLSTPSTADVWLQSS 93



 Score = 74.3 bits (181), Expect(2) = 9e-34
 Identities = 45/82 (54%), Positives = 56/82 (68%), Gaps = 3/82 (3%)
 Frame = -2

Query: 248 LLLQKSMLEKQWKLSFNQMRTVVAPGE-TNKKPEVIRSGISARKRRTNARNKCF--KHSA 78
           LLLQK +LEKQW LSF Q  T  APGE T+KK +V RSG+SAR+RRT+ R  C   KHS 
Sbjct: 111 LLLQKFLLEKQWNLSFEQTITDGAPGEETHKKIQVTRSGVSARQRRTSTRRTCLSPKHSI 170

Query: 77  YMGIVGKGRQLRATVSPELMQT 12
                 K +QL + VSPEL+++
Sbjct: 171 MQPT--KRKQLGSMVSPELLKS 190


>ref|XP_010275189.1| PREDICTED: RNA polymerase sigma factor sigA-like [Nelumbo nucifera]
           gi|720061510|ref|XP_010275190.1| PREDICTED: RNA
           polymerase sigma factor sigA-like [Nelumbo nucifera]
           gi|720061513|ref|XP_010275191.1| PREDICTED: RNA
           polymerase sigma factor sigA-like [Nelumbo nucifera]
          Length = 516

 Score = 89.7 bits (221), Expect(2) = 1e-31
 Identities = 44/92 (47%), Positives = 68/92 (73%)
 Frame = -1

Query: 558 TAAVIGLSAGKRILSSSFYSSDLADRLFPVVDHGSAQFSAASTKSSVIVSRRSTHFSANV 379
           TAAVIGL+AGKR+LSS+FY SD+ DRL  V DHG AQ+  A +K SV+++++S++F  + 
Sbjct: 13  TAAVIGLNAGKRLLSSTFYYSDVTDRLASVYDHGLAQYQTAPSK-SVVIAKKSSNFDHDF 71

Query: 378 PADRHTVPVKAVREHVDTIAPTTTSSSWFERS 283
            ++RH   +KA++EH++T + T+T   W + S
Sbjct: 72  ASNRHNQSIKALKEHLNTFS-TSTEDMWLQTS 102



 Score = 73.9 bits (180), Expect(2) = 1e-31
 Identities = 43/82 (52%), Positives = 53/82 (64%), Gaps = 1/82 (1%)
 Frame = -2

Query: 248 LLLQKSMLEKQWKLSFNQ-MRTVVAPGETNKKPEVIRSGISARKRRTNARNKCFKHSAYM 72
           LLLQKS+LEKQW LSF + MR      ET KK +V RSG+SAR+RRTN R K     + M
Sbjct: 120 LLLQKSLLEKQWNLSFEKSMRKGAPKEETRKKIQVTRSGVSARQRRTNTRKKYLNTDSSM 179

Query: 71  GIVGKGRQLRATVSPELMQTRL 6
               + R L + VS EL+Q+RL
Sbjct: 180 MQTTRRRHLGSMVSEELLQSRL 201


>ref|XP_011012457.1| PREDICTED: RNA polymerase sigma factor sigA [Populus euphratica]
           gi|743936142|ref|XP_011012458.1| PREDICTED: RNA
           polymerase sigma factor sigA [Populus euphratica]
          Length = 509

 Score = 85.1 bits (209), Expect(2) = 2e-28
 Identities = 43/91 (47%), Positives = 68/91 (74%), Gaps = 1/91 (1%)
 Frame = -1

Query: 558 TAAVIGLSAGKRILSSSFYSSDLADRLFPVVDHGSAQFSAASTKSSVIVSRRSTHFSANV 379
           TAAVIGLS GKR+LSSSFY SDL ++L  V DHG      A+TK +V+V+++S+++  N 
Sbjct: 4   TAAVIGLSTGKRLLSSSFYYSDLTEKLSSVNDHGITYCPTATTK-NVVVAKKSSNYGPNF 62

Query: 378 P-ADRHTVPVKAVREHVDTIAPTTTSSSWFE 289
           P ++R++  +KA++EHVDT + ++  ++WF+
Sbjct: 63  PSSNRNSHSIKALKEHVDTASASSNVATWFK 93



 Score = 67.8 bits (164), Expect(2) = 2e-28
 Identities = 39/82 (47%), Positives = 51/82 (62%), Gaps = 1/82 (1%)
 Frame = -2

Query: 248 LLLQKSMLEKQWKLSFNQMRTVVAPGE-TNKKPEVIRSGISARKRRTNARNKCFKHSAYM 72
           LLLQKSMLEKQW LSF +  +  +  +  NKK  V  SG+SAR+RR N R K    S +M
Sbjct: 113 LLLQKSMLEKQWNLSFERTNSSDSTSKKNNKKIPVTCSGVSARQRRVNNRRKNQNQSKFM 172

Query: 71  GIVGKGRQLRATVSPELMQTRL 6
                 + LR+ +SP+L+Q RL
Sbjct: 173 SQSSDFKFLRSVISPDLLQNRL 194


>ref|XP_002325882.1| RNA POLYMERASE SIGMA SUBUNIT 1 family protein [Populus trichocarpa]
           gi|222862757|gb|EEF00264.1| RNA POLYMERASE SIGMA SUBUNIT
           1 family protein [Populus trichocarpa]
          Length = 509

 Score = 85.5 bits (210), Expect(2) = 5e-28
 Identities = 43/91 (47%), Positives = 70/91 (76%), Gaps = 1/91 (1%)
 Frame = -1

Query: 558 TAAVIGLSAGKRILSSSFYSSDLADRLFPVVDHGSAQFSAASTKSSVIVSRRSTHFSANV 379
           TAAVIGLS+GKR+LSSSFY SDL ++L  V DHG   +  A+TK +VIV+++S+++  + 
Sbjct: 4   TAAVIGLSSGKRLLSSSFYYSDLTEKLSNVNDHGITYYPTATTK-NVIVAKKSSNYGPSF 62

Query: 378 P-ADRHTVPVKAVREHVDTIAPTTTSSSWFE 289
           P ++R++  +KA++EHVDT + ++  ++WF+
Sbjct: 63  PSSNRNSHSIKALKEHVDTASASSNVATWFK 93



 Score = 65.9 bits (159), Expect(2) = 5e-28
 Identities = 39/82 (47%), Positives = 50/82 (60%), Gaps = 1/82 (1%)
 Frame = -2

Query: 248 LLLQKSMLEKQWKLSFNQMRTVVAPGE-TNKKPEVIRSGISARKRRTNARNKCFKHSAYM 72
           LLLQKSMLEKQW LSF +  +  +  +  NKK  V  SG+SAR+RR N R K    S +M
Sbjct: 113 LLLQKSMLEKQWNLSFERTNSSDSTSKKNNKKIPVTCSGVSARQRRVNNRRKNQNQSKFM 172

Query: 71  GIVGKGRQLRATVSPELMQTRL 6
                 + LR+  SP+L+Q RL
Sbjct: 173 SQSSDFKFLRSVSSPDLLQNRL 194


>ref|XP_006371210.1| hypothetical protein POPTR_0019s06020g [Populus trichocarpa]
           gi|550316904|gb|ERP49007.1| hypothetical protein
           POPTR_0019s06020g [Populus trichocarpa]
          Length = 451

 Score = 85.5 bits (210), Expect(2) = 5e-28
 Identities = 43/91 (47%), Positives = 70/91 (76%), Gaps = 1/91 (1%)
 Frame = -1

Query: 558 TAAVIGLSAGKRILSSSFYSSDLADRLFPVVDHGSAQFSAASTKSSVIVSRRSTHFSANV 379
           TAAVIGLS+GKR+LSSSFY SDL ++L  V DHG   +  A+TK +VIV+++S+++  + 
Sbjct: 4   TAAVIGLSSGKRLLSSSFYYSDLTEKLSNVNDHGITYYPTATTK-NVIVAKKSSNYGPSF 62

Query: 378 P-ADRHTVPVKAVREHVDTIAPTTTSSSWFE 289
           P ++R++  +KA++EHVDT + ++  ++WF+
Sbjct: 63  PSSNRNSHSIKALKEHVDTASASSNVATWFK 93



 Score = 65.9 bits (159), Expect(2) = 5e-28
 Identities = 39/82 (47%), Positives = 50/82 (60%), Gaps = 1/82 (1%)
 Frame = -2

Query: 248 LLLQKSMLEKQWKLSFNQMRTVVAPGE-TNKKPEVIRSGISARKRRTNARNKCFKHSAYM 72
           LLLQKSMLEKQW LSF +  +  +  +  NKK  V  SG+SAR+RR N R K    S +M
Sbjct: 113 LLLQKSMLEKQWNLSFERTNSSDSTSKKNNKKIPVTCSGVSARQRRVNNRRKNQNQSKFM 172

Query: 71  GIVGKGRQLRATVSPELMQTRL 6
                 + LR+  SP+L+Q RL
Sbjct: 173 SQSSDFKFLRSVSSPDLLQNRL 194


>ref|XP_002524027.1| RNA polymerase sigma factor rpoD, putative [Ricinus communis]
           gi|223536754|gb|EEF38395.1| RNA polymerase sigma factor
           rpoD, putative [Ricinus communis]
          Length = 508

 Score = 80.9 bits (198), Expect(2) = 9e-28
 Identities = 41/91 (45%), Positives = 68/91 (74%), Gaps = 1/91 (1%)
 Frame = -1

Query: 558 TAAVIGLSAGKRILSSSFYSSDLADRLFPVVDHGSAQFSAASTKSSVIVSRRSTHFSANV 379
           TAAVIGLSAGKR+LSS+FY SDL ++L    +HG   +   STK ++IV+++S+++  + 
Sbjct: 3   TAAVIGLSAGKRLLSSTFYYSDLTEKLSSANEHGLTHYQITSTK-TLIVAKKSSNYGPSF 61

Query: 378 P-ADRHTVPVKAVREHVDTIAPTTTSSSWFE 289
           P ++R+T  +KA++EHVDT +  +T+++ F+
Sbjct: 62  PSSNRNTQSIKALKEHVDTASAPSTAATQFK 92



 Score = 69.7 bits (169), Expect(2) = 9e-28
 Identities = 40/82 (48%), Positives = 52/82 (63%), Gaps = 1/82 (1%)
 Frame = -2

Query: 248 LLLQKSMLEKQWKLSFNQMRTVVAPG-ETNKKPEVIRSGISARKRRTNARNKCFKHSAYM 72
           LLLQKSMLEKQW LSF +  +  +P  ++ KK  V  SG+SAR+RR N R K    S + 
Sbjct: 112 LLLQKSMLEKQWNLSFERTDSSDSPSRKSQKKIPVTCSGVSARQRRINIRRKNLSQSKFT 171

Query: 71  GIVGKGRQLRATVSPELMQTRL 6
                 +QL++ VSPEL+Q RL
Sbjct: 172 VQANVFKQLKSAVSPELLQNRL 193


>ref|XP_012070278.1| PREDICTED: RNA polymerase sigma factor sigA [Jatropha curcas]
           gi|802585167|ref|XP_012070279.1| PREDICTED: RNA
           polymerase sigma factor sigA [Jatropha curcas]
           gi|643732469|gb|KDP39565.1| hypothetical protein
           JCGZ_02585 [Jatropha curcas]
          Length = 508

 Score = 86.3 bits (212), Expect(2) = 2e-27
 Identities = 41/90 (45%), Positives = 65/90 (72%)
 Frame = -1

Query: 558 TAAVIGLSAGKRILSSSFYSSDLADRLFPVVDHGSAQFSAASTKSSVIVSRRSTHFSANV 379
           TAAVIGL AGKR+LSS+FY SDL ++LF V DHG   + ++STK+ ++  + S + S+  
Sbjct: 3   TAAVIGLHAGKRLLSSTFYYSDLTEKLFNVNDHGLTHYQSSSTKNVIVAKKSSNYGSSFQ 62

Query: 378 PADRHTVPVKAVREHVDTIAPTTTSSSWFE 289
            ++R+   +KA++EHVDT +  +T+++ FE
Sbjct: 63  SSNRNAQSIKALKEHVDTASSPSTAATGFE 92



 Score = 63.2 bits (152), Expect(2) = 2e-27
 Identities = 37/82 (45%), Positives = 51/82 (62%), Gaps = 1/82 (1%)
 Frame = -2

Query: 248 LLLQKSMLEKQWKLSFNQMRTVVAPG-ETNKKPEVIRSGISARKRRTNARNKCFKHSAYM 72
           LLLQKSMLEKQW LSF +  +  +P  ++ K+  +  SG+SAR+RR N R K    S  +
Sbjct: 112 LLLQKSMLEKQWNLSFERTASSDSPSTKSQKQIPITCSGLSARQRRINTRRKNLIQSKSI 171

Query: 71  GIVGKGRQLRATVSPELMQTRL 6
                 +QL++ VSPEL+  RL
Sbjct: 172 VQASGFKQLKSAVSPELLLNRL 193


>gb|KDO48032.1| hypothetical protein CISIN_1g010521mg [Citrus sinensis]
           gi|641828897|gb|KDO48033.1| hypothetical protein
           CISIN_1g010521mg [Citrus sinensis]
          Length = 508

 Score = 79.0 bits (193), Expect(2) = 3e-27
 Identities = 43/91 (47%), Positives = 66/91 (72%), Gaps = 1/91 (1%)
 Frame = -1

Query: 558 TAAVIGLSAGKRILSSSFYSSDLADRLFPVVDHGSAQFSAASTKSSVIVSRRSTHFSANV 379
           TAAVIGLSAGKR+LSSSFY SD++++   + D GSA     STK +V+ +++S++++ + 
Sbjct: 4   TAAVIGLSAGKRLLSSSFYYSDISEKFSYINDLGSANSQVGSTK-NVVAAKKSSNYNPSF 62

Query: 378 P-ADRHTVPVKAVREHVDTIAPTTTSSSWFE 289
           P ++R T P+KA++EHVDT    +T+  W E
Sbjct: 63  PSSNRQTQPIKALKEHVDTNF-ASTAEPWAE 92



 Score = 69.7 bits (169), Expect(2) = 3e-27
 Identities = 39/82 (47%), Positives = 53/82 (64%), Gaps = 1/82 (1%)
 Frame = -2

Query: 248 LLLQKSMLEKQWKLSFNQMRTVVAPGE-TNKKPEVIRSGISARKRRTNARNKCFKHSAYM 72
           LLLQKSMLEKQW LSF +     +P + T+KK  V  SG+SAR+RR N++ K    +  +
Sbjct: 112 LLLQKSMLEKQWNLSFERTVLTDSPSKKTHKKVPVTCSGVSARQRRLNSKKKILSQNKSI 171

Query: 71  GIVGKGRQLRATVSPELMQTRL 6
                 +QLR+ +SPEL+Q RL
Sbjct: 172 LQQNGSKQLRSMISPELIQNRL 193


>gb|AKC88633.1| sigma factor [Melianthus villosus]
          Length = 506

 Score = 84.0 bits (206), Expect(2) = 3e-27
 Identities = 46/93 (49%), Positives = 68/93 (73%), Gaps = 1/93 (1%)
 Frame = -1

Query: 558 TAAVIGLSAGKRILSSSFYSSDLADRLFPVVDHGSAQFSAASTKSSVIVSRRSTHFSANV 379
           TAAVIGLSAGKR+LSSS Y SD A++L    DHG   ++A  TK +V+++++S++ S   
Sbjct: 3   TAAVIGLSAGKRLLSSSLYYSDYAEKLSYANDHG--HYNATPTK-TVVIAKKSSNCSPRF 59

Query: 378 P-ADRHTVPVKAVREHVDTIAPTTTSSSWFERS 283
           P ++R T  +KA++EHVD I+  +T+ SWF+RS
Sbjct: 60  PSSNRKTQSIKALKEHVDDISGPSTAESWFQRS 92



 Score = 64.7 bits (156), Expect(2) = 3e-27
 Identities = 37/81 (45%), Positives = 51/81 (62%), Gaps = 1/81 (1%)
 Frame = -2

Query: 248 LLLQKSMLEKQWKLSFNQ-MRTVVAPGETNKKPEVIRSGISARKRRTNARNKCFKHSAYM 72
           LLLQKSMLEKQW LSF++ M T +   +T K+  V  SG+SAR+RR + + K    ++ M
Sbjct: 110 LLLQKSMLEKQWNLSFDKTMLTDLVKEKTCKRIPVTCSGVSARQRRMSNKRKILSENSSM 169

Query: 71  GIVGKGRQLRATVSPELMQTR 9
               +  +LR  + PELMQ R
Sbjct: 170 MQTSRCNRLRTIIGPELMQNR 190


>gb|KDO48034.1| hypothetical protein CISIN_1g010521mg [Citrus sinensis]
          Length = 499

 Score = 79.0 bits (193), Expect(2) = 3e-27
 Identities = 43/91 (47%), Positives = 66/91 (72%), Gaps = 1/91 (1%)
 Frame = -1

Query: 558 TAAVIGLSAGKRILSSSFYSSDLADRLFPVVDHGSAQFSAASTKSSVIVSRRSTHFSANV 379
           TAAVIGLSAGKR+LSSSFY SD++++   + D GSA     STK +V+ +++S++++ + 
Sbjct: 4   TAAVIGLSAGKRLLSSSFYYSDISEKFSYINDLGSANSQVGSTK-NVVAAKKSSNYNPSF 62

Query: 378 P-ADRHTVPVKAVREHVDTIAPTTTSSSWFE 289
           P ++R T P+KA++EHVDT    +T+  W E
Sbjct: 63  PSSNRQTQPIKALKEHVDTNF-ASTAEPWAE 92



 Score = 69.7 bits (169), Expect(2) = 3e-27
 Identities = 39/82 (47%), Positives = 53/82 (64%), Gaps = 1/82 (1%)
 Frame = -2

Query: 248 LLLQKSMLEKQWKLSFNQMRTVVAPGE-TNKKPEVIRSGISARKRRTNARNKCFKHSAYM 72
           LLLQKSMLEKQW LSF +     +P + T+KK  V  SG+SAR+RR N++ K    +  +
Sbjct: 112 LLLQKSMLEKQWNLSFERTVLTDSPSKKTHKKVPVTCSGVSARQRRLNSKKKILSQNKSI 171

Query: 71  GIVGKGRQLRATVSPELMQTRL 6
                 +QLR+ +SPEL+Q RL
Sbjct: 172 LQQNGSKQLRSMISPELIQNRL 193


>gb|KDO48031.1| hypothetical protein CISIN_1g010521mg [Citrus sinensis]
          Length = 485

 Score = 79.0 bits (193), Expect(2) = 3e-27
 Identities = 43/91 (47%), Positives = 66/91 (72%), Gaps = 1/91 (1%)
 Frame = -1

Query: 558 TAAVIGLSAGKRILSSSFYSSDLADRLFPVVDHGSAQFSAASTKSSVIVSRRSTHFSANV 379
           TAAVIGLSAGKR+LSSSFY SD++++   + D GSA     STK +V+ +++S++++ + 
Sbjct: 4   TAAVIGLSAGKRLLSSSFYYSDISEKFSYINDLGSANSQVGSTK-NVVAAKKSSNYNPSF 62

Query: 378 P-ADRHTVPVKAVREHVDTIAPTTTSSSWFE 289
           P ++R T P+KA++EHVDT    +T+  W E
Sbjct: 63  PSSNRQTQPIKALKEHVDTNF-ASTAEPWAE 92



 Score = 69.7 bits (169), Expect(2) = 3e-27
 Identities = 39/82 (47%), Positives = 53/82 (64%), Gaps = 1/82 (1%)
 Frame = -2

Query: 248 LLLQKSMLEKQWKLSFNQMRTVVAPGE-TNKKPEVIRSGISARKRRTNARNKCFKHSAYM 72
           LLLQKSMLEKQW LSF +     +P + T+KK  V  SG+SAR+RR N++ K    +  +
Sbjct: 112 LLLQKSMLEKQWNLSFERTVLTDSPSKKTHKKVPVTCSGVSARQRRLNSKKKILSQNKSI 171

Query: 71  GIVGKGRQLRATVSPELMQTRL 6
                 +QLR+ +SPEL+Q RL
Sbjct: 172 LQQNGSKQLRSMISPELIQNRL 193


>gb|KDO48035.1| hypothetical protein CISIN_1g010521mg [Citrus sinensis]
          Length = 443

 Score = 79.0 bits (193), Expect(2) = 3e-27
 Identities = 43/91 (47%), Positives = 66/91 (72%), Gaps = 1/91 (1%)
 Frame = -1

Query: 558 TAAVIGLSAGKRILSSSFYSSDLADRLFPVVDHGSAQFSAASTKSSVIVSRRSTHFSANV 379
           TAAVIGLSAGKR+LSSSFY SD++++   + D GSA     STK +V+ +++S++++ + 
Sbjct: 4   TAAVIGLSAGKRLLSSSFYYSDISEKFSYINDLGSANSQVGSTK-NVVAAKKSSNYNPSF 62

Query: 378 P-ADRHTVPVKAVREHVDTIAPTTTSSSWFE 289
           P ++R T P+KA++EHVDT    +T+  W E
Sbjct: 63  PSSNRQTQPIKALKEHVDTNF-ASTAEPWAE 92



 Score = 69.7 bits (169), Expect(2) = 3e-27
 Identities = 39/82 (47%), Positives = 53/82 (64%), Gaps = 1/82 (1%)
 Frame = -2

Query: 248 LLLQKSMLEKQWKLSFNQMRTVVAPGE-TNKKPEVIRSGISARKRRTNARNKCFKHSAYM 72
           LLLQKSMLEKQW LSF +     +P + T+KK  V  SG+SAR+RR N++ K    +  +
Sbjct: 112 LLLQKSMLEKQWNLSFERTVLTDSPSKKTHKKVPVTCSGVSARQRRLNSKKKILSQNKSI 171

Query: 71  GIVGKGRQLRATVSPELMQTRL 6
                 +QLR+ +SPEL+Q RL
Sbjct: 172 LQQNGSKQLRSMISPELIQNRL 193


>gb|KDO48036.1| hypothetical protein CISIN_1g010521mg [Citrus sinensis]
          Length = 419

 Score = 79.0 bits (193), Expect(2) = 3e-27
 Identities = 43/91 (47%), Positives = 66/91 (72%), Gaps = 1/91 (1%)
 Frame = -1

Query: 558 TAAVIGLSAGKRILSSSFYSSDLADRLFPVVDHGSAQFSAASTKSSVIVSRRSTHFSANV 379
           TAAVIGLSAGKR+LSSSFY SD++++   + D GSA     STK +V+ +++S++++ + 
Sbjct: 4   TAAVIGLSAGKRLLSSSFYYSDISEKFSYINDLGSANSQVGSTK-NVVAAKKSSNYNPSF 62

Query: 378 P-ADRHTVPVKAVREHVDTIAPTTTSSSWFE 289
           P ++R T P+KA++EHVDT    +T+  W E
Sbjct: 63  PSSNRQTQPIKALKEHVDTNF-ASTAEPWAE 92



 Score = 69.7 bits (169), Expect(2) = 3e-27
 Identities = 39/82 (47%), Positives = 53/82 (64%), Gaps = 1/82 (1%)
 Frame = -2

Query: 248 LLLQKSMLEKQWKLSFNQMRTVVAPGE-TNKKPEVIRSGISARKRRTNARNKCFKHSAYM 72
           LLLQKSMLEKQW LSF +     +P + T+KK  V  SG+SAR+RR N++ K    +  +
Sbjct: 112 LLLQKSMLEKQWNLSFERTVLTDSPSKKTHKKVPVTCSGVSARQRRLNSKKKILSQNKSI 171

Query: 71  GIVGKGRQLRATVSPELMQTRL 6
                 +QLR+ +SPEL+Q RL
Sbjct: 172 LQQNGSKQLRSMISPELIQNRL 193


>gb|KDO48037.1| hypothetical protein CISIN_1g010521mg [Citrus sinensis]
          Length = 417

 Score = 79.0 bits (193), Expect(2) = 3e-27
 Identities = 43/91 (47%), Positives = 66/91 (72%), Gaps = 1/91 (1%)
 Frame = -1

Query: 558 TAAVIGLSAGKRILSSSFYSSDLADRLFPVVDHGSAQFSAASTKSSVIVSRRSTHFSANV 379
           TAAVIGLSAGKR+LSSSFY SD++++   + D GSA     STK +V+ +++S++++ + 
Sbjct: 4   TAAVIGLSAGKRLLSSSFYYSDISEKFSYINDLGSANSQVGSTK-NVVAAKKSSNYNPSF 62

Query: 378 P-ADRHTVPVKAVREHVDTIAPTTTSSSWFE 289
           P ++R T P+KA++EHVDT    +T+  W E
Sbjct: 63  PSSNRQTQPIKALKEHVDTNF-ASTAEPWAE 92



 Score = 69.7 bits (169), Expect(2) = 3e-27
 Identities = 39/82 (47%), Positives = 53/82 (64%), Gaps = 1/82 (1%)
 Frame = -2

Query: 248 LLLQKSMLEKQWKLSFNQMRTVVAPGE-TNKKPEVIRSGISARKRRTNARNKCFKHSAYM 72
           LLLQKSMLEKQW LSF +     +P + T+KK  V  SG+SAR+RR N++ K    +  +
Sbjct: 112 LLLQKSMLEKQWNLSFERTVLTDSPSKKTHKKVPVTCSGVSARQRRLNSKKKILSQNKSI 171

Query: 71  GIVGKGRQLRATVSPELMQTRL 6
                 +QLR+ +SPEL+Q RL
Sbjct: 172 LQQNGSKQLRSMISPELIQNRL 193