BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Ophiopogon21_contig00005942
         (695 letters)

Database: ./nr 
           77,306,371 sequences; 28,104,191,420 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|EMT02256.1| DNA-directed RNA polymerase II subunit RPB1 [Aegi...    57   8e-08
gb|ELU04758.1| hypothetical protein CAPTEDRAFT_91083 [Capitella ...    64   1e-07
gb|EMS47149.1| DNA-directed RNA polymerase II subunit RPB1 [Trit...    56   1e-07

>gb|EMT02256.1| DNA-directed RNA polymerase II subunit RPB1 [Aegilops tauschii]
          Length = 1784

 Score = 57.0 bits (136), Expect(2) = 8e-08
 Identities = 30/80 (37%), Positives = 49/80 (61%)
 Frame = -3

Query: 681  TQL*SHFPELQPHVSQLQSYFTKLQPHIPSLQSHIPCL*PNISCIQSNITILQSYLTFIQ 502
            T+L  +F EL P V++LQ YFT+L P +  LQ +   L P+++ +  ++T LQ YLT + 
Sbjct: 1648 TELQPYFTELLPDVTELQPYFTELLPDVTELQPYFTKLLPDVTGLLPDVTELQPYLTELL 1707

Query: 501  SNIAFIQPNFSFIQSHISCL 442
              +  +QP  + +QS  +CL
Sbjct: 1708 PEVTELQPYVTLVQS-FTCL 1726



 Score = 26.9 bits (58), Expect(2) = 8e-08
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = -1

Query: 341  IQCKFSKLQPNFTNLFSNFSFIFPSKSYVQPYK 243
            +Q   SKLQP   +L ++ + I  +K  VQP K
Sbjct: 1737 VQSSSSKLQPCLADLLAHLTIICTTKPIVQPDK 1769



 Score = 54.3 bits (129), Expect(2) = 3e-07
 Identities = 31/96 (32%), Positives = 53/96 (55%)
 Frame = -3

Query: 693  QSYFTQL*SHFPELQPHVSQLQSYFTKLQPHIPSLQSHIPCL*PNISCIQSNITILQSYL 514
            Q Y   L     ELQP +++LQ YFT+L P++  LQ +   L P+++ +Q   T L   +
Sbjct: 1588 QPYVAWLQPDITELQPDITELQPYFTELLPNVTELQPYFTELLPDVTELQPYFTELLPDV 1647

Query: 513  TFIQSNIAFIQPNFSFIQSHISCL*PDFSWVQPNFS 406
            T +Q     + P+ + +Q + + L PD + +QP F+
Sbjct: 1648 TELQPYFTELLPDVTELQPYFTELLPDVTELQPYFT 1683



 Score = 27.7 bits (60), Expect(2) = 3e-07
 Identities = 16/60 (26%), Positives = 32/60 (53%)
 Frame = -1

Query: 326  SKLQPNFTNLFSNFSFIFPSKSYVQPYKSIQFWCKPRLQSKLSTVQPKCGLLANCTGIFT 147
            ++LQP FT L  + + + P  + +QPY +        L  +++ +QP   L+ + T +F+
Sbjct: 1676 TELQPYFTKLLPDVTGLLPDVTELQPYLT-------ELLPEVTELQPYVTLVQSFTCLFS 1728


>gb|ELU04758.1| hypothetical protein CAPTEDRAFT_91083 [Capitella teleta]
          Length = 120

 Score = 63.5 bits (153), Expect = 1e-07
 Identities = 30/87 (34%), Positives = 50/87 (57%)
 Frame = -3

Query: 666 HFPELQPHVSQLQSYFTKLQPHIPSLQSHIPCL*PNISCIQSNITILQSYLTFIQSNIAF 487
           H   L PH S L S+ + L PH+  L SH+ CL P+ SC+   ++ L  + + + S++++
Sbjct: 3   HASCLMPHASCLMSHVSCLMPHVSCLMSHVSCLMPHDSCLMPLVSCLMPHDSCLLSHVSW 62

Query: 486 IQPNFSFIQSHISCL*PDFSWVQPNFS 406
           + P+ S +  H SCL P  S + P+ S
Sbjct: 63  LMPHVSCLMPHASCLIPHASCLMPHAS 89


>gb|EMS47149.1| DNA-directed RNA polymerase II subunit RPB1 [Triticum urartu]
          Length = 1846

 Score = 55.8 bits (133), Expect(2) = 1e-07
 Identities = 33/87 (37%), Positives = 51/87 (58%), Gaps = 7/87 (8%)
 Frame = -3

Query: 681  TQL*SHFPELQPHVSQLQSYFTKLQPHIPSLQSHIPCL*PNISCIQS-------NITILQ 523
            T+L  +F EL P V++LQ YFTKL P +  LQ +   L P+++ +Q        ++T LQ
Sbjct: 1703 TELQPYFTELLPDVTELQPYFTKLLPDVTELQPYFTELLPDVTELQPYFTELLPDVTELQ 1762

Query: 522  SYLTFIQSNIAFIQPNFSFIQSHISCL 442
             YLT +   +  +QP  +F+QS  +CL
Sbjct: 1763 PYLTELLPEVTELQPYVTFVQS-FTCL 1788



 Score = 27.3 bits (59), Expect(2) = 1e-07
 Identities = 14/33 (42%), Positives = 19/33 (57%)
 Frame = -1

Query: 341  IQCKFSKLQPNFTNLFSNFSFIFPSKSYVQPYK 243
            IQ   SKLQP   +L ++ + I  +K  VQP K
Sbjct: 1799 IQSSSSKLQPCLADLLAHLTIICTTKPIVQPDK 1831