BLASTX nr result
ID: Ophiopogon21_contig00005422
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Ophiopogon21_contig00005422
(805 letters)
Database: ./nr
77,306,371 sequences; 28,104,191,420 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAK70406.1|AF369930_1 pol polyprotein [Citrus x paradisi] 78 2e-17
ref|XP_008393076.1| PREDICTED: uncharacterized protein LOC103455... 79 2e-17
pir||S23312 retrovirus-related polyprotein KAS-1 - Arabidopsis t... 74 5e-16
gb|ABG22123.1| polyprotein [Prunus avium] 89 4e-15
emb|CDY03436.1| BnaC01g16460D [Brassica napus] 66 4e-15
gb|AAD29756.1|AF076243_3 putative transposon protein [Arabidopsi... 64 5e-15
gb|ABO36622.1| copia LTR rider [Solanum lycopersicum] gi|1337118... 75 6e-15
gb|AAF19226.1|AC007505_2 Highly similar to Ta1-3 polyprotein [Ar... 71 2e-14
emb|CAN61630.1| hypothetical protein VITISV_003191 [Vitis vinifera] 72 2e-14
ref|XP_010912064.1| PREDICTED: uncharacterized protein LOC105038... 75 3e-14
sp|P10978.1|POLX_TOBAC RecName: Full=Retrovirus-related Pol poly... 56 4e-14
gb|AAP54315.2| retrotransposon protein, putative, Ty1-copia subc... 61 4e-14
gb|AAM91886.1| putative polyprotein [Oryza sativa Japonica Group] 61 4e-14
emb|CAD41912.2| OSJNBa0033G05.13 [Oryza sativa Japonica Group] 61 5e-14
gb|AAD32759.1| putative retroelement pol polyprotein [Arabidopsi... 66 1e-13
gb|ABA91380.1| retrotransposon protein, putative, Ty1-copia subc... 59 1e-13
gb|ABA98804.1| retrotransposon protein, putative, Ty1-copia subc... 62 2e-13
gb|ABA98656.1| retrotransposon protein, putative, Ty1-copia subc... 62 2e-13
gb|ACS74199.1| putative gag-pol polyprotein [Fragaria x ananassa] 76 2e-13
ref|XP_010097937.1| Retrovirus-related Pol polyprotein from tran... 71 2e-13
>gb|AAK70406.1|AF369930_1 pol polyprotein [Citrus x paradisi]
Length = 297
Score = 78.2 bits (191), Expect(2) = 2e-17
Identities = 41/63 (65%), Positives = 49/63 (77%), Gaps = 1/63 (1%)
Frame = +3
Query: 12 VCWSCTLQSTVALSTTEAEYMALTEAV-EALWLQGLMDDLGIDQDFLKVNCDNMSAI*PA 188
V W LQST+ALSTTEAEY+A TEAV EA+WL+GL+ DLG+ Q+ + V CDN SAI A
Sbjct: 173 VSWRSILQSTIALSTTEAEYIAATEAVKEAIWLKGLLGDLGVIQENIAVFCDNQSAIFLA 232
Query: 189 KNQ 197
KNQ
Sbjct: 233 KNQ 235
Score = 39.3 bits (90), Expect(2) = 2e-17
Identities = 18/34 (52%), Positives = 23/34 (67%)
Frame = +1
Query: 277 VLDEEDIELIKIHTNQNPADMLTKVVGGAKFQLC 378
+++ D+ L KI T NP+DMLTKVV KFQ C
Sbjct: 254 IIEGGDVLLKKIDTKDNPSDMLTKVVSEVKFQHC 287
>ref|XP_008393076.1| PREDICTED: uncharacterized protein LOC103455257 [Malus domestica]
Length = 253
Score = 79.3 bits (194), Expect(2) = 2e-17
Identities = 39/60 (65%), Positives = 49/60 (81%), Gaps = 1/60 (1%)
Frame = +3
Query: 21 SCTLQSTVALSTTEAEYMALTEAV-EALWLQGLMDDLGIDQDFLKVNCDNMSAI*PAKNQ 197
S + +TVALSTTEAEYMA+TEA+ E +WLQGL+DDLG+ QD + V+CD+ SAI AKNQ
Sbjct: 132 STNMNNTVALSTTEAEYMAVTEAIKEVIWLQGLLDDLGVQQDHVNVHCDSQSAIHLAKNQ 191
Score = 38.1 bits (87), Expect(2) = 2e-17
Identities = 19/34 (55%), Positives = 23/34 (67%)
Frame = +1
Query: 277 VLDEEDIELIKIHTNQNPADMLTKVVGGAKFQLC 378
++D+ DI L KI T NPADMLTK V KF+ C
Sbjct: 210 IIDDGDILLQKIETADNPADMLTKPVSLHKFKHC 243
>pir||S23312 retrovirus-related polyprotein KAS-1 - Arabidopsis thaliana
retrotransposon Ta1 (fragment) gi|16356|emb|CAA37917.1|
reverse transcriptase [Arabidopsis thaliana]
Length = 587
Score = 73.9 bits (180), Expect(2) = 5e-16
Identities = 38/62 (61%), Positives = 47/62 (75%), Gaps = 1/62 (1%)
Frame = +3
Query: 12 VCWSCTLQSTVALSTTEAEYMALTEAV-EALWLQGLMDDLGIDQDFLKVNCDNMSAI*PA 188
V W LQS ALSTTEAE+MALTEA EALW++GLM DLG++QD + + CD+ SAI +
Sbjct: 463 VSWKANLQSVTALSTTEAEFMALTEAAKEALWIKGLMKDLGLEQDKVTLWCDSQSAICLS 522
Query: 189 KN 194
KN
Sbjct: 523 KN 524
Score = 38.5 bits (88), Expect(2) = 5e-16
Identities = 16/32 (50%), Positives = 25/32 (78%)
Frame = +1
Query: 277 VLDEEDIELIKIHTNQNPADMLTKVVGGAKFQ 372
V++ D++++KIHT++NPAD LTK + KFQ
Sbjct: 544 VVEAGDVDVLKIHTSRNPADALTKSIPVNKFQ 575
>gb|ABG22123.1| polyprotein [Prunus avium]
Length = 276
Score = 89.0 bits (219), Expect = 4e-15
Identities = 45/64 (70%), Positives = 52/64 (81%), Gaps = 1/64 (1%)
Frame = +3
Query: 9 PVCWSCTLQSTVALSTTEAEYMALTEAV-EALWLQGLMDDLGIDQDFLKVNCDNMSAI*P 185
PV W LQSTVALSTTEAEYMA+TEA+ EA+WLQGL+DDLG+ QD + V CD+ SAI
Sbjct: 201 PVSWRSILQSTVALSTTEAEYMAVTEAIKEAIWLQGLLDDLGVQQDHVDVYCDSQSAIYL 260
Query: 186 AKNQ 197
AKNQ
Sbjct: 261 AKNQ 264
>emb|CDY03436.1| BnaC01g16460D [Brassica napus]
Length = 187
Score = 66.2 bits (160), Expect(2) = 4e-15
Identities = 34/62 (54%), Positives = 44/62 (70%), Gaps = 1/62 (1%)
Frame = +3
Query: 12 VCWSCTLQSTVALSTTEAEYMALTEAV-EALWLQGLMDDLGIDQDFLKVNCDNMSAI*PA 188
V W LQS VALSTTE E+MALT AV +A+WL+G + G QD L+++CD+ SAI +
Sbjct: 67 VSWKSGLQSVVALSTTEVEFMALTLAVKKAIWLRGFTSEFGYKQDSLRIDCDSQSAIALS 126
Query: 189 KN 194
KN
Sbjct: 127 KN 128
Score = 43.1 bits (100), Expect(2) = 4e-15
Identities = 18/28 (64%), Positives = 22/28 (78%)
Frame = +1
Query: 295 IELIKIHTNQNPADMLTKVVGGAKFQLC 378
+ L KIHT++NP+D LTK V G KFQLC
Sbjct: 154 VSLAKIHTSKNPSDFLTKCVPGTKFQLC 181
>gb|AAD29756.1|AF076243_3 putative transposon protein [Arabidopsis thaliana]
gi|7267201|emb|CAB77912.1| putative transposon protein
[Arabidopsis thaliana]
Length = 570
Score = 63.9 bits (154), Expect(2) = 5e-15
Identities = 31/57 (54%), Positives = 42/57 (73%), Gaps = 1/57 (1%)
Frame = +3
Query: 12 VCWSCTLQSTVALSTTEAEYMALTEAV-EALWLQGLMDDLGIDQDFLKVNCDNMSAI 179
V W LQ+T+A+ TTEAEY+A+TEAV EALW+QGL+ D+G+ QD + V D+ I
Sbjct: 459 VSWKSNLQNTIAIPTTEAEYVAITEAVKEALWMQGLLKDMGVKQDKVLVWSDSQCVI 515
Score = 45.1 bits (105), Expect(2) = 5e-15
Identities = 19/31 (61%), Positives = 26/31 (83%)
Frame = +1
Query: 277 VLDEEDIELIKIHTNQNPADMLTKVVGGAKF 369
V++ D+E++KIHT+QNPADMLTKV+ KF
Sbjct: 540 VIENGDVEVLKIHTSQNPADMLTKVIPVQKF 570
>gb|ABO36622.1| copia LTR rider [Solanum lycopersicum] gi|133711819|gb|ABO36636.1|
copia LTR rider [Solanum lycopersicum]
Length = 1307
Score = 74.7 bits (182), Expect(2) = 6e-15
Identities = 39/63 (61%), Positives = 46/63 (73%), Gaps = 1/63 (1%)
Frame = +3
Query: 12 VCWSCTLQSTVALSTTEAEYMALTEAV-EALWLQGLMDDLGIDQDFLKVNCDNMSAI*PA 188
V W TLQ TV LSTTEAEYMALTEA E +WL+GL+ DLG+ D V CD++SAI A
Sbjct: 1187 VSWKATLQPTVTLSTTEAEYMALTEAAKEGIWLKGLVSDLGLHHDQATVYCDSLSAICLA 1246
Query: 189 KNQ 197
K+Q
Sbjct: 1247 KDQ 1249
Score = 33.9 bits (76), Expect(2) = 6e-15
Identities = 16/37 (43%), Positives = 24/37 (64%)
Frame = +1
Query: 286 EEDIELIKIHTNQNPADMLTKVVGGAKFQLCKNFKSV 396
E+ I++ K+ T NPADM TK V +KFQ C + ++
Sbjct: 1268 EKRIKVKKVGTADNPADMFTKPVPQSKFQHCLDLLNI 1304
>gb|AAF19226.1|AC007505_2 Highly similar to Ta1-3 polyprotein [Arabidopsis thaliana]
Length = 1356
Score = 70.9 bits (172), Expect(2) = 2e-14
Identities = 34/62 (54%), Positives = 47/62 (75%), Gaps = 1/62 (1%)
Frame = +3
Query: 12 VCWSCTLQSTVALSTTEAEYMALTEAV-EALWLQGLMDDLGIDQDFLKVNCDNMSAI*PA 188
V W +LQ VA+STTEAEY+AL EA EA+W++GL+ D+G+ QD +K+ CD+ SAI +
Sbjct: 1232 VSWKASLQPVVAMSTTEAEYIALAEAAKEAMWIKGLLQDMGMQQDKVKIWCDSQSAICLS 1291
Query: 189 KN 194
KN
Sbjct: 1292 KN 1293
Score = 36.2 bits (82), Expect(2) = 2e-14
Identities = 14/32 (43%), Positives = 24/32 (75%)
Frame = +1
Query: 277 VLDEEDIELIKIHTNQNPADMLTKVVGGAKFQ 372
V++ D++++KIHT++NP D LTK + KF+
Sbjct: 1313 VVESGDVDVLKIHTSRNPVDALTKCIPVNKFK 1344
>emb|CAN61630.1| hypothetical protein VITISV_003191 [Vitis vinifera]
Length = 1208
Score = 72.0 bits (175), Expect(2) = 2e-14
Identities = 38/63 (60%), Positives = 47/63 (74%), Gaps = 1/63 (1%)
Frame = +3
Query: 12 VCWSCTLQSTVALSTTEAEYMALTEAV-EALWLQGLMDDLGIDQDFLKVNCDNMSAI*PA 188
V W LQS VALSTTEAEYMA+TEAV EA+WL+G+ ++L + + + V CDN SAI A
Sbjct: 1085 VSWKANLQSVVALSTTEAEYMAMTEAVKEAIWLKGITEELAMYRGKVVVYCDNQSAIHLA 1144
Query: 189 KNQ 197
KNQ
Sbjct: 1145 KNQ 1147
Score = 35.0 bits (79), Expect(2) = 2e-14
Identities = 15/31 (48%), Positives = 21/31 (67%)
Frame = +1
Query: 292 DIELIKIHTNQNPADMLTKVVGGAKFQLCKN 384
+I + K+HT NP+DMLTK + KF+ C N
Sbjct: 1171 EIGVGKVHTKDNPSDMLTKSLNVTKFKHCLN 1201
>ref|XP_010912064.1| PREDICTED: uncharacterized protein LOC105038071 [Elaeis guineensis]
Length = 397
Score = 75.5 bits (184), Expect(2) = 3e-14
Identities = 38/63 (60%), Positives = 49/63 (77%), Gaps = 1/63 (1%)
Frame = +3
Query: 12 VCWSCTLQSTVALSTTEAEYMALTEA-VEALWLQGLMDDLGIDQDFLKVNCDNMSAI*PA 188
V W TLQS ALSTTEAEYMALTEA EA+WL+GL+ DL ++QD L ++CD+ SA+ A
Sbjct: 274 VSWKATLQSIFALSTTEAEYMALTEAEKEAIWLKGLVQDLDLEQDCLDIHCDSQSALHLA 333
Query: 189 KNQ 197
++Q
Sbjct: 334 RDQ 336
Score = 30.8 bits (68), Expect(2) = 3e-14
Identities = 17/41 (41%), Positives = 26/41 (63%)
Frame = +1
Query: 277 VLDEEDIELIKIHTNQNPADMLTKVVGGAKFQLCKNFKSVI 399
++++ D+ L KI+T N ADM TK + KF KNF ++I
Sbjct: 355 LVEKGDVRLQKIYTAYNLADMFTKPILAIKF---KNFLNLI 392
>sp|P10978.1|POLX_TOBAC RecName: Full=Retrovirus-related Pol polyprotein from transposon TNT
1-94; Includes: RecName: Full=Protease; Includes:
RecName: Full=Reverse transcriptase; Includes: RecName:
Full=Endonuclease gi|20045|emb|CAA32025.1| unnamed
protein product [Nicotiana tabacum]
Length = 1328
Score = 56.2 bits (134), Expect(2) = 4e-14
Identities = 30/62 (48%), Positives = 39/62 (62%), Gaps = 1/62 (1%)
Frame = +3
Query: 12 VCWSCTLQSTVALSTTEAEYMALTE-AVEALWLQGLMDDLGIDQDFLKVNCDNMSAI*PA 188
+ W LQ VALSTTEAEY+A TE E +WL+ + +LG+ Q V CD+ SAI +
Sbjct: 1205 ISWQSKLQKCVALSTTEAEYIAATETGKEMIWLKRFLQELGLHQKEYVVYCDSQSAIDLS 1264
Query: 189 KN 194
KN
Sbjct: 1265 KN 1266
Score = 49.7 bits (117), Expect(2) = 4e-14
Identities = 21/35 (60%), Positives = 30/35 (85%)
Frame = +1
Query: 277 VLDEEDIELIKIHTNQNPADMLTKVVGGAKFQLCK 381
++D+E ++++KI TN+NPADMLTKVV KF+LCK
Sbjct: 1286 MVDDESLKVLKISTNENPADMLTKVVPRNKFELCK 1320
>gb|AAP54315.2| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1312
Score = 61.2 bits (147), Expect(2) = 4e-14
Identities = 33/63 (52%), Positives = 44/63 (69%), Gaps = 1/63 (1%)
Frame = +3
Query: 12 VCWSCTLQSTVALSTTEAEYMALTEAV-EALWLQGLMDDLGIDQDFLKVNCDNMSAI*PA 188
V W +LQ+TVALSTTEAEYMA++EA EA+WL+GL +L + + CD+ SAI
Sbjct: 1190 VSWKASLQATVALSTTEAEYMAISEACKEAIWLRGLYTELCGVTSCINIFCDSQSAICLT 1249
Query: 189 KNQ 197
K+Q
Sbjct: 1250 KDQ 1252
Score = 44.7 bits (104), Expect(2) = 4e-14
Identities = 20/42 (47%), Positives = 28/42 (66%)
Frame = +1
Query: 277 VLDEEDIELIKIHTNQNPADMLTKVVGGAKFQLCKNFKSVIV 402
V+ E D+++ KI T+ NPADM+TK V KF+LC + V V
Sbjct: 1271 VIVEGDVKVCKISTHDNPADMMTKPVSATKFELCSSLVGVTV 1312
>gb|AAM91886.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1280
Score = 61.2 bits (147), Expect(2) = 4e-14
Identities = 33/63 (52%), Positives = 44/63 (69%), Gaps = 1/63 (1%)
Frame = +3
Query: 12 VCWSCTLQSTVALSTTEAEYMALTEAV-EALWLQGLMDDLGIDQDFLKVNCDNMSAI*PA 188
V W +LQ+TVALSTTEAEYMA++EA EA+WL+GL +L + + CD+ SAI
Sbjct: 1158 VSWKASLQATVALSTTEAEYMAISEACKEAIWLRGLYTELCGVTSCINIFCDSQSAICLT 1217
Query: 189 KNQ 197
K+Q
Sbjct: 1218 KDQ 1220
Score = 44.7 bits (104), Expect(2) = 4e-14
Identities = 20/42 (47%), Positives = 28/42 (66%)
Frame = +1
Query: 277 VLDEEDIELIKIHTNQNPADMLTKVVGGAKFQLCKNFKSVIV 402
V+ E D+++ KI T+ NPADM+TK V KF+LC + V V
Sbjct: 1239 VIVEGDVKVCKISTHDNPADMMTKPVSATKFELCSSLVGVTV 1280
>emb|CAD41912.2| OSJNBa0033G05.13 [Oryza sativa Japonica Group]
Length = 1181
Score = 61.2 bits (147), Expect(2) = 5e-14
Identities = 33/63 (52%), Positives = 44/63 (69%), Gaps = 1/63 (1%)
Frame = +3
Query: 12 VCWSCTLQSTVALSTTEAEYMALTEAV-EALWLQGLMDDLGIDQDFLKVNCDNMSAI*PA 188
V W +LQ+TVALSTTEAEYMA++EA EA+WL+GL +L + + CD+ SAI
Sbjct: 1059 VSWKASLQATVALSTTEAEYMAISEACKEAIWLRGLYTELCGVTSCINIFCDSQSAICLT 1118
Query: 189 KNQ 197
K+Q
Sbjct: 1119 KDQ 1121
Score = 44.3 bits (103), Expect(2) = 5e-14
Identities = 20/42 (47%), Positives = 28/42 (66%)
Frame = +1
Query: 277 VLDEEDIELIKIHTNQNPADMLTKVVGGAKFQLCKNFKSVIV 402
V+ E D+++ KI T+ NPADM+TK V KF+LC + V V
Sbjct: 1140 VIAEGDVKVCKISTHDNPADMMTKPVPATKFELCSSLVGVTV 1181
>gb|AAD32759.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
Length = 1356
Score = 66.2 bits (160), Expect(2) = 1e-13
Identities = 33/62 (53%), Positives = 45/62 (72%), Gaps = 1/62 (1%)
Frame = +3
Query: 12 VCWSCTLQSTVALSTTEAEYMALTEAV-EALWLQGLMDDLGIDQDFLKVNCDNMSAI*PA 188
+ W LQ VA STTE+EYM+LTEAV EA+WL+GL+ D G +Q +++ CD+ SAI +
Sbjct: 1233 ISWKSGLQRVVAQSTTESEYMSLTEAVKEAIWLKGLLKDFGYEQKSVEIFCDSQSAIALS 1292
Query: 189 KN 194
KN
Sbjct: 1293 KN 1294
Score = 37.7 bits (86), Expect(2) = 1e-13
Identities = 16/40 (40%), Positives = 26/40 (65%)
Frame = +1
Query: 277 VLDEEDIELIKIHTNQNPADMLTKVVGGAKFQLCKNFKSV 396
++ + +E++KI T +NPAD+ TKV+ +KFQ N V
Sbjct: 1314 IISDGTVEVLKISTEKNPADIFTKVLAVSKFQAALNLLRV 1353
>gb|ABA91380.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1138
Score = 59.3 bits (142), Expect(2) = 1e-13
Identities = 32/63 (50%), Positives = 42/63 (66%), Gaps = 1/63 (1%)
Frame = +3
Query: 12 VCWSCTLQSTVALSTTEAEYMALTEAV-EALWLQGLMDDLGIDQDFLKVNCDNMSAI*PA 188
V W LQ+TVALSTTEAEYMA++EA E +WL+GL +L + + CD+ SAI
Sbjct: 1016 VSWKANLQATVALSTTEAEYMAISEACKETIWLRGLYTELCGVTSCINIFCDSQSAICLT 1075
Query: 189 KNQ 197
K+Q
Sbjct: 1076 KDQ 1078
Score = 44.7 bits (104), Expect(2) = 1e-13
Identities = 20/42 (47%), Positives = 28/42 (66%)
Frame = +1
Query: 277 VLDEEDIELIKIHTNQNPADMLTKVVGGAKFQLCKNFKSVIV 402
V+ E D+++ KI T+ NPADM+TK V KF+LC + V V
Sbjct: 1097 VITEGDVKVCKISTHDNPADMMTKPVPATKFELCSSLVGVTV 1138
>gb|ABA98804.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1333
Score = 61.6 bits (148), Expect(2) = 2e-13
Identities = 33/63 (52%), Positives = 43/63 (68%), Gaps = 1/63 (1%)
Frame = +3
Query: 12 VCWSCTLQSTVALSTTEAEYMALTEAV-EALWLQGLMDDLGIDQDFLKVNCDNMSAI*PA 188
V W TLQS VALSTTEAEYMA+ EA E +WL+GL +L + + ++CD+ SAI
Sbjct: 1211 VSWRATLQSVVALSTTEAEYMAICEACKELIWLKGLYAELSGVESCISLHCDSQSAIYLT 1270
Query: 189 KNQ 197
K+Q
Sbjct: 1271 KDQ 1273
Score = 42.0 bits (97), Expect(2) = 2e-13
Identities = 18/41 (43%), Positives = 29/41 (70%)
Frame = +1
Query: 277 VLDEEDIELIKIHTNQNPADMLTKVVGGAKFQLCKNFKSVI 399
V++E +++ KI T+ NPADM+TK + AKF+LC + +I
Sbjct: 1292 VIEEGKLKVCKISTHDNPADMMTKPIPVAKFELCSSLVGLI 1332
>gb|ABA98656.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1333
Score = 61.6 bits (148), Expect(2) = 2e-13
Identities = 33/63 (52%), Positives = 43/63 (68%), Gaps = 1/63 (1%)
Frame = +3
Query: 12 VCWSCTLQSTVALSTTEAEYMALTEAV-EALWLQGLMDDLGIDQDFLKVNCDNMSAI*PA 188
V W TLQS VALSTTEAEYMA+ EA E +WL+GL +L + + ++CD+ SAI
Sbjct: 1211 VSWRATLQSVVALSTTEAEYMAICEACKELIWLKGLYAELSGVESCISLHCDSQSAIYLT 1270
Query: 189 KNQ 197
K+Q
Sbjct: 1271 KDQ 1273
Score = 42.0 bits (97), Expect(2) = 2e-13
Identities = 18/41 (43%), Positives = 29/41 (70%)
Frame = +1
Query: 277 VLDEEDIELIKIHTNQNPADMLTKVVGGAKFQLCKNFKSVI 399
V++E +++ KI T+ NPADM+TK + AKF+LC + +I
Sbjct: 1292 VIEEGKLKVCKISTHDNPADMMTKPIPVAKFELCSSLVGLI 1332
>gb|ACS74199.1| putative gag-pol polyprotein [Fragaria x ananassa]
Length = 1297
Score = 76.3 bits (186), Expect(2) = 2e-13
Identities = 40/64 (62%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 9 PVCWSCTLQSTVALSTTEAEYMALTEA-VEALWLQGLMDDLGIDQDFLKVNCDNMSAI*P 185
PV W TLQ+ ALSTTEAEYMALTEA EA+WL GL LG+ Q+ + V CD+ SAI
Sbjct: 1178 PVSWKATLQAVTALSTTEAEYMALTEASKEAIWLNGLAGQLGVHQEGVVVKCDSQSAIHL 1237
Query: 186 AKNQ 197
AKNQ
Sbjct: 1238 AKNQ 1241
Score = 27.3 bits (59), Expect(2) = 2e-13
Identities = 12/23 (52%), Positives = 15/23 (65%)
Frame = +1
Query: 307 KIHTNQNPADMLTKVVGGAKFQL 375
K+HT+ N AD LTK V K+ L
Sbjct: 1270 KVHTDDNAADFLTKPVSVEKYLL 1292
>ref|XP_010097937.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Morus
notabilis] gi|587884397|gb|EXB73293.1|
Retrovirus-related Pol polyprotein from transposon TNT
1-94 [Morus notabilis]
Length = 1822
Score = 71.2 bits (173), Expect(2) = 2e-13
Identities = 38/63 (60%), Positives = 46/63 (73%), Gaps = 1/63 (1%)
Frame = +3
Query: 12 VCWSCTLQSTVALSTTEAEYMALTEAV-EALWLQGLMDDLGIDQDFLKVNCDNMSAI*PA 188
V W LQ VALSTTEAEY+A TE V EA+WL+GL+ +LGI QD ++V CDN S+I
Sbjct: 557 VSWKAQLQLVVALSTTEAEYIAATEGVKEAMWLKGLIGELGIVQDEVEVFCDNQSSILLT 616
Query: 189 KNQ 197
KNQ
Sbjct: 617 KNQ 619
Score = 32.0 bits (71), Expect(2) = 2e-13
Identities = 14/28 (50%), Positives = 19/28 (67%)
Frame = +1
Query: 277 VLDEEDIELIKIHTNQNPADMLTKVVGG 360
++ + L KIHT+ NPADM T+VV G
Sbjct: 638 IISRGTVTLEKIHTDDNPADMGTRVVQG 665