BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Ophiopogon21_contig00004793
         (756 letters)

Database: ./nr 
           77,306,371 sequences; 28,104,191,420 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ABO36622.1| copia LTR rider [Solanum lycopersicum] gi|1337118...   132   3e-37
emb|CAN67309.1| hypothetical protein VITISV_028165 [Vitis vinifera]   125   3e-37
gb|AFB73912.1| polyprotein [Citrus sinensis]                          144   2e-36
gb|AFB73911.1| polyprotein [Citrus sinensis]                          140   6e-36
gb|ABA97308.2| retrotransposon protein, putative, Ty1-copia subc...   113   2e-35
gb|ACL97387.1| Gag-Pol polyprotein [Lotus japonicus]                  138   2e-33
gb|KHN13665.1| Retrovirus-related Pol polyprotein from transposo...   110   5e-33
gb|ACL97386.1| Gag-Pol polyprotein [Medicago truncatula]              147   1e-32
gb|ACL97383.1| Gag-Pol polyprotein [Medicago truncatula]              147   1e-32
gb|ACL97384.1| Gag-Pol polyprotein [Medicago truncatula]              147   1e-32
gb|KHN13199.1| Retrovirus-related Pol polyprotein from transposo...   108   5e-32
gb|KHN13198.1| Retrovirus-related Pol polyprotein from transposo...   108   5e-32
emb|CAN80490.1| hypothetical protein VITISV_004703 [Vitis vinifera]   131   1e-31
gb|ACL97385.1| Gag-Pol polyprotein [Medicago truncatula]              142   2e-31
emb|CAJ09951.2| putative gag-pol polyprotein [Citrus sinensis]        108   3e-31
gb|ABA96825.1| retrotransposon protein, putative, Ty1-copia subc...   102   2e-30
gb|AER13159.1| putative Ty-1 copia retrotransposon [Phaseolus vu...   138   4e-30
emb|CDN96898.1| putative Ty-1 copia retrotransposon [Phaseolus v...   137   6e-30
gb|AAD23679.1| putative retroelement pol polyprotein [Arabidopsi...   117   2e-29
gb|ABA99474.1| retrotransposon protein, putative, Ty1-copia subc...   110   4e-29

>gb|ABO36622.1| copia LTR rider [Solanum lycopersicum] gi|133711819|gb|ABO36636.1|
           copia LTR rider [Solanum lycopersicum]
          Length = 1307

 Score =  132 bits (331), Expect(2) = 3e-37
 Identities = 69/164 (42%), Positives = 95/164 (57%), Gaps = 8/164 (4%)
 Frame = -2

Query: 476 GNSSGGATKKNVS--------CYWCKQKGHVKKDCKAFKEWLKKHPQADKSKSNGAQAGV 321
           G  +GG   K +S        C +CK+KGH K DC       KK  Q++K       A V
Sbjct: 204 GRKNGGKKNKPMSKGAKPDDVCNYCKEKGHWKFDCP------KKKKQSEKQS---VSAAV 254

Query: 320 AEAEPEETCDVLTAQSGTAKLSDTWILDSGCTWHMSPRRDWFSTYRAMDGGSVLMGNNSV 141
           AE +     D+          SD W+LDSG ++H+ PRR+WF+TY  +DGGS+ M N+SV
Sbjct: 255 AEEDTNSEEDIALVADEHTHHSDVWVLDSGASYHICPRREWFTTYEQVDGGSISMANSSV 314

Query: 140 CRIVGIGSVRIRNQDGVERTLTGVRHVPDLKKNLLSLGALEAQG 9
           C++VG GS++IR  DG   TL  VRHVP + KNL+SL  L+++G
Sbjct: 315 CKVVGTGSIKIRTHDGSFCTLNEVRHVPLMTKNLISLSLLDSKG 358



 Score = 51.6 bits (122), Expect(2) = 3e-37
 Identities = 27/82 (32%), Positives = 44/82 (53%)
 Frame = -1

Query: 756 MKKQLYGLRMEEGTPILQHLNTFNRIASXXXXXXXXXXXXXXXXXXLCSLPPSYGHLVTT 577
           +K++L+GLRM EGT + +HL   N +                    L SLP S+ + V +
Sbjct: 100 LKQRLFGLRMAEGTQLREHLEQLNTLLLELRNIDVKIEDEDAALILLVSLPMSFENFVQS 159

Query: 576 IMYGKETLELEDVRTVLQNNEI 511
            + GK+T+ LE+VR+ L + E+
Sbjct: 160 FIVGKDTVSLEEVRSALHSREL 181


>emb|CAN67309.1| hypothetical protein VITISV_028165 [Vitis vinifera]
          Length = 344

 Score =  125 bits (315), Expect(2) = 3e-37
 Identities = 67/154 (43%), Positives = 89/154 (57%)
 Frame = -2

Query: 467 SGGATKKNVSCYWCKQKGHVKKDCKAFKEWLKKHPQADKSKSNGAQAGVAEAEPEETCDV 288
           S   ++ N  C+ CK++GH  K+    K       + +K   N   A  A+ E   T DV
Sbjct: 171 SRSKSRGNNKCFKCKKEGHYVKNXPDRKG------KENKRNYNSGDATFAK-ENSNTTDV 223

Query: 287 LTAQSGTAKLSDTWILDSGCTWHMSPRRDWFSTYRAMDGGSVLMGNNSVCRIVGIGSVRI 108
           L          D WILDSGC++HMSP  DWFSTY+ +DGG VLMGN   C++VGI  ++I
Sbjct: 224 LLVX--VTNSDDEWILDSGCSYHMSPNGDWFSTYQPIDGGKVLMGNKVACKVVGIHXIQI 281

Query: 107 RNQDGVERTLTGVRHVPDLKKNLLSLGALEAQGC 6
           +   G+ RTLT VRHVP L KNL+ L  L++ GC
Sbjct: 282 KMHGGIIRTLTNVRHVPKLNKNLIFLRTLDSNGC 315



 Score = 57.4 bits (137), Expect(2) = 3e-37
 Identities = 30/84 (35%), Positives = 43/84 (51%)
 Frame = -1

Query: 756 MKKQLYGLRMEEGTPILQHLNTFNRIASXXXXXXXXXXXXXXXXXXLCSLPPSYGHLVTT 577
           +KK+L+ L+M+E   I  H N FN+                     +CSLP SY H V  
Sbjct: 57  LKKRLHTLQMKESMSIKDHFNEFNKTIXDLRNIDVKVNYEDQAIFLMCSLPNSYEHFVDI 116

Query: 576 IMYGKETLELEDVRTVLQNNEILK 505
           +MYG+ TL ++DVR  L + E+ K
Sbjct: 117 MMYGRGTLFIKDVRVALNSRELKK 140


>gb|AFB73912.1| polyprotein [Citrus sinensis]
          Length = 1309

 Score =  144 bits (362), Expect(2) = 2e-36
 Identities = 76/176 (43%), Positives = 103/176 (58%), Gaps = 8/176 (4%)
 Frame = -2

Query: 506 RGXXXXXXXSGNSSGGATK----KNVSCYWCKQKGHVKKDCKAFKEWL-KKHPQADKSKS 342
           RG       SG+ + G +K    KNV CY C +KGHVKK+C     W  +K  +  + +S
Sbjct: 203 RGRSTERGPSGSQNHGRSKSRSKKNVKCYNCGKKGHVKKEC-----WSNQKRREGKEPES 257

Query: 341 NGAQAGVAEAEPEETC---DVLTAQSGTAKLSDTWILDSGCTWHMSPRRDWFSTYRAMDG 171
           + AQ  VA    +      +      G  +LSD W++DSG TWHM+ RR+WF TY  + G
Sbjct: 258 SNAQGCVASTSDDGEILYSEATIVSEGRKRLSDVWLIDSGATWHMTSRREWFHTYEPISG 317

Query: 170 GSVLMGNNSVCRIVGIGSVRIRNQDGVERTLTGVRHVPDLKKNLLSLGALEAQGCK 3
           GSV MGN+    I GIG+++I+  DG  RT+  VRHV  LKKNLLSLG +++ GCK
Sbjct: 318 GSVYMGNDHALEIAGIGTIKIKMFDGTIRTIEEVRHVNGLKKNLLSLGQMDSHGCK 373



 Score = 37.0 bits (84), Expect(2) = 2e-36
 Identities = 24/83 (28%), Positives = 36/83 (43%), Gaps = 2/83 (2%)
 Frame = -1

Query: 756 MKKQLYGLRMEEGTPILQHLNTFNRIASXXXXXXXXXXXXXXXXXXLCSLPPSYGHLVTT 577
           +K++LY LRM E T +  H+NT   + S                  L SLP SY  L+  
Sbjct: 98  LKRKLYTLRMAESTMVTDHINTLKTLFSQLTTLGHNIEENERAELLLQSLPDSYDQLIIN 157

Query: 576 IMYGK--ETLELEDVRTVLQNNE 514
           +      ++L  +DV   + N E
Sbjct: 158 LTNNNPVDSLVFDDVAASVLNEE 180


>gb|AFB73911.1| polyprotein [Citrus sinensis]
          Length = 1309

 Score =  140 bits (354), Expect(2) = 6e-36
 Identities = 72/172 (41%), Positives = 103/172 (59%), Gaps = 4/172 (2%)
 Frame = -2

Query: 506 RGXXXXXXXSGNSSGGATK----KNVSCYWCKQKGHVKKDCKAFKEWLKKHPQADKSKSN 339
           RG       SG+ + G +K    KNV CY C +KGHVKK+C + ++  ++  + + S + 
Sbjct: 203 RGRSTERGPSGSQNQGRSKFRGKKNVKCYNCGKKGHVKKECWSNQK-RREGKEPETSNAQ 261

Query: 338 GAQAGVAEAEPEETCDVLTAQSGTAKLSDTWILDSGCTWHMSPRRDWFSTYRAMDGGSVL 159
           G  A  ++       +  T   G  +LSD W++DSG TWHM+ RR+WF TY  + GGSV 
Sbjct: 262 GCVASTSDDGEILYSEATTVSEGRKRLSDVWLIDSGATWHMTSRREWFHTYEPISGGSVY 321

Query: 158 MGNNSVCRIVGIGSVRIRNQDGVERTLTGVRHVPDLKKNLLSLGALEAQGCK 3
           MGN+    I GIG+++I+  DG  RT+  VRHV  LKKNLLSLG +++ G K
Sbjct: 322 MGNDHALEIAGIGTIKIKMFDGTIRTIGEVRHVNGLKKNLLSLGQMDSHGYK 373



 Score = 38.1 bits (87), Expect(2) = 6e-36
 Identities = 25/83 (30%), Positives = 36/83 (43%), Gaps = 2/83 (2%)
 Frame = -1

Query: 756 MKKQLYGLRMEEGTPILQHLNTFNRIASXXXXXXXXXXXXXXXXXXLCSLPPSYGHLVTT 577
           +K++LY LRM E T +  H+NT   + S                  L SLP SY  L+  
Sbjct: 98  LKRKLYTLRMAESTMVTDHINTLKTLFSQLTTLGHNIEENERAELLLQSLPDSYDQLIIN 157

Query: 576 IMYGK--ETLELEDVRTVLQNNE 514
           +      E+L  +DV   + N E
Sbjct: 158 LTNNNPVESLVFDDVAASVLNEE 180


>gb|ABA97308.2| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
           Japonica Group]
          Length = 407

 Score =  113 bits (283), Expect(2) = 2e-35
 Identities = 55/148 (37%), Positives = 90/148 (60%)
 Frame = -2

Query: 452 KKNVSCYWCKQKGHVKKDCKAFKEWLKKHPQADKSKSNGAQAGVAEAEPEETCDVLTAQS 273
           KK V C+ C + GH+ ++C   K          K+K+N   +  +     + CD+LT  S
Sbjct: 202 KKMVQCFRCDEWGHISRECPTLK---------GKAKANTVTS--SNDSDSDGCDLLTMSS 250

Query: 272 GTAKLSDTWILDSGCTWHMSPRRDWFSTYRAMDGGSVLMGNNSVCRIVGIGSVRIRNQDG 93
             +K ++ WILDS  ++H++PR++WFS+Y++ + G V +G+++    VG+G V+I+ +DG
Sbjct: 251 AQSKDAEAWILDSASSFHVTPRKEWFSSYKSGEFGFVYLGDDTSYPAVGVGEVKIKLEDG 310

Query: 92  VERTLTGVRHVPDLKKNLLSLGALEAQG 9
            E  L GVRHVP  K+NL+SL  L  +G
Sbjct: 311 GEHVLQGVRHVPGQKRNLISLETLHEEG 338



 Score = 63.9 bits (154), Expect(2) = 2e-35
 Identities = 29/83 (34%), Positives = 49/83 (59%)
 Frame = -1

Query: 750 KQLYGLRMEEGTPILQHLNTFNRIASXXXXXXXXXXXXXXXXXXLCSLPPSYGHLVTTIM 571
           ++LYGL+M+EG  +  H+N FN++ +                  LCSLP SY H+VTT+ 
Sbjct: 91  QKLYGLKMQEGADLTVHVNVFNQLVTDLVKMDVEVDDEDKAIVFLCSLPESYEHVVTTLT 150

Query: 570 YGKETLELEDVRTVLQNNEILKR 502
           YGKET++ +D+ + L   + +++
Sbjct: 151 YGKETIKTKDITSALLARDQMRK 173


>gb|ACL97387.1| Gag-Pol polyprotein [Lotus japonicus]
          Length = 1305

 Score =  138 bits (348), Expect(2) = 2e-33
 Identities = 74/172 (43%), Positives = 102/172 (59%), Gaps = 4/172 (2%)
 Frame = -2

Query: 506 RGXXXXXXXSGNSSGGAT----KKNVSCYWCKQKGHVKKDCKAFKEWLKKHPQADKSKSN 339
           RG       SG+ + G +    K N+ CY C ++GH+KKDC + K+  +K  +A  S S 
Sbjct: 203 RGRSTERGPSGSQNHGRSTSRRKTNLKCYNCGKRGHLKKDCWSNKKSGEKSSEA--STSQ 260

Query: 338 GAQAGVAEAEPEETCDVLTAQSGTAKLSDTWILDSGCTWHMSPRRDWFSTYRAMDGGSVL 159
           G  A  ++       +   +  G  +L+D WI+DSG TWHM+PRRDWF TY  +  G+V 
Sbjct: 261 GCVASTSDDGEVLYSEAAVSTKGKNRLTDVWIVDSGATWHMTPRRDWFCTYEPVSEGNVF 320

Query: 158 MGNNSVCRIVGIGSVRIRNQDGVERTLTGVRHVPDLKKNLLSLGALEAQGCK 3
           MGN+    IVGIG+V+I+  DG  RTL  VRHV +L KNLLS+G L+  G K
Sbjct: 321 MGNDHALEIVGIGTVKIKMYDGTIRTLQEVRHVKELAKNLLSVGQLDDLGYK 372



 Score = 32.0 bits (71), Expect(2) = 2e-33
 Identities = 23/83 (27%), Positives = 32/83 (38%), Gaps = 2/83 (2%)
 Frame = -1

Query: 756 MKKQLYGLRMEEGTPILQHLNTFNRIASXXXXXXXXXXXXXXXXXXLCSLPPSYGHLVTT 577
           +K++LY  RM E T +  H+N  N + +                  L SLP SY  LV  
Sbjct: 98  LKRRLYTFRMSESTSMPDHINNLNTMFAQLSASDFTIGENERAEVLLQSLPDSYDQLVIN 157

Query: 576 IMYGK--ETLELEDVRTVLQNNE 514
           I      + L   DV   +   E
Sbjct: 158 ITNNNIVDRLSFNDVAGAILEEE 180


>gb|KHN13665.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94,
           partial [Glycine soja]
          Length = 337

 Score =  110 bits (274), Expect(2) = 5e-33
 Identities = 52/129 (40%), Positives = 79/129 (61%)
 Frame = -2

Query: 479 SGNSSGGATKKNVSCYWCKQKGHVKKDCKAFKEWLKKHPQADKSKSNGAQAGVAEAEPEE 300
           S N      K   +CY+CK++GH +K+C   K+        +  K N        A+  E
Sbjct: 213 SKNKRRSKYKNEKACYYCKKEGHFRKECPERKK-------KNNGKYNDESDIAVVADGYE 265

Query: 299 TCDVLTAQSGTAKLSDTWILDSGCTWHMSPRRDWFSTYRAMDGGSVLMGNNSVCRIVGIG 120
           + +VL+    T K S+ WILDSGC++HM+P  +WFS+Y+ +DGG VLMGNN VC ++GIG
Sbjct: 266 SAEVLSIS--TKKHSEEWILDSGCSFHMTPNLEWFSSYKEIDGGKVLMGNNMVCNVIGIG 323

Query: 119 SVRIRNQDG 93
           +++++ QDG
Sbjct: 324 TIKLKVQDG 332



 Score = 59.3 bits (142), Expect(2) = 5e-33
 Identities = 29/85 (34%), Positives = 50/85 (58%)
 Frame = -1

Query: 756 MKKQLYGLRMEEGTPILQHLNTFNRIASXXXXXXXXXXXXXXXXXXLCSLPPSYGHLVTT 577
           +KK+L+ L+MEEG+ I +H++ F +                     LCSLP S+ +LV T
Sbjct: 102 LKKRLHQLKMEEGSSIKEHVSLFTKAVLDLKSVDVRIDEEDQAVMLLCSLPSSFENLVDT 161

Query: 576 IMYGKETLELEDVRTVLQNNEILKR 502
           +++G++TL LE+V+  L + E+ K+
Sbjct: 162 MLFGRDTLTLEEVKATLNSRELKKK 186


>gb|ACL97386.1| Gag-Pol polyprotein [Medicago truncatula]
          Length = 1305

 Score =  147 bits (370), Expect = 1e-32
 Identities = 74/172 (43%), Positives = 102/172 (59%), Gaps = 4/172 (2%)
 Frame = -2

Query: 506 RGXXXXXXXSGNSSGGATK----KNVSCYWCKQKGHVKKDCKAFKEWLKKHPQADKSKSN 339
           RG       SG+ + G +K    KN+ CY C  KGHVKK+C   K+  +K+ +A  S S 
Sbjct: 203 RGRSTERGPSGSQNHGRSKSRRKKNIKCYGCGMKGHVKKECWNIKKNGEKNSEA--STSQ 260

Query: 338 GAQAGVAEAEPEETCDVLTAQSGTAKLSDTWILDSGCTWHMSPRRDWFSTYRAMDGGSVL 159
           G  A  ++       +  T+  G  +L+D WI+DSG TWHM+P RDWF +Y  +  GSV 
Sbjct: 261 GCVASTSDDGEILYSEAATSSKGERRLNDVWIMDSGATWHMTPHRDWFYSYEPISEGSVY 320

Query: 158 MGNNSVCRIVGIGSVRIRNQDGVERTLTGVRHVPDLKKNLLSLGALEAQGCK 3
           MGN+    I G+G++R++  DG  R + GVRHV  LKKNLLS+G L+  GCK
Sbjct: 321 MGNDHALEIAGVGTIRLKMHDGTVRKIQGVRHVKGLKKNLLSVGQLDDLGCK 372


>gb|ACL97383.1| Gag-Pol polyprotein [Medicago truncatula]
          Length = 1305

 Score =  147 bits (370), Expect = 1e-32
 Identities = 74/172 (43%), Positives = 102/172 (59%), Gaps = 4/172 (2%)
 Frame = -2

Query: 506 RGXXXXXXXSGNSSGGATK----KNVSCYWCKQKGHVKKDCKAFKEWLKKHPQADKSKSN 339
           RG       SG+ + G +K    KN+ CY C  KGHVKK+C   K+  +K+ +A  S S 
Sbjct: 203 RGRSTERGPSGSQNHGRSKSRRKKNIKCYGCGMKGHVKKECWNIKKNGEKNSEA--STSQ 260

Query: 338 GAQAGVAEAEPEETCDVLTAQSGTAKLSDTWILDSGCTWHMSPRRDWFSTYRAMDGGSVL 159
           G  A  ++       +  T+  G  +L+D WI+DSG TWHM+P RDWF +Y  +  GSV 
Sbjct: 261 GCVASTSDDGEILYSEAATSSKGERRLNDVWIMDSGATWHMTPHRDWFFSYEPISEGSVY 320

Query: 158 MGNNSVCRIVGIGSVRIRNQDGVERTLTGVRHVPDLKKNLLSLGALEAQGCK 3
           MGN+    I G+G++R++  DG  R + GVRHV  LKKNLLS+G L+  GCK
Sbjct: 321 MGNDHALEIAGVGTIRLKMHDGTVRKIQGVRHVKGLKKNLLSVGQLDDLGCK 372


>gb|ACL97384.1| Gag-Pol polyprotein [Medicago truncatula]
          Length = 1305

 Score =  147 bits (370), Expect = 1e-32
 Identities = 74/172 (43%), Positives = 102/172 (59%), Gaps = 4/172 (2%)
 Frame = -2

Query: 506 RGXXXXXXXSGNSSGGATK----KNVSCYWCKQKGHVKKDCKAFKEWLKKHPQADKSKSN 339
           RG       SG+ + G +K    KN+ CY C  KGHVKK+C   K+  +K+ +A  S S 
Sbjct: 203 RGRSTERGPSGSQNHGRSKSRRKKNIKCYGCGMKGHVKKECWNIKKNGEKNSEA--STSQ 260

Query: 338 GAQAGVAEAEPEETCDVLTAQSGTAKLSDTWILDSGCTWHMSPRRDWFSTYRAMDGGSVL 159
           G  A  ++       +  T+  G  +L+D WI+DSG TWHM+P RDWF +Y  +  GSV 
Sbjct: 261 GCVASTSDDGEILYSEAATSSKGERRLNDVWIMDSGATWHMTPHRDWFFSYEPISEGSVY 320

Query: 158 MGNNSVCRIVGIGSVRIRNQDGVERTLTGVRHVPDLKKNLLSLGALEAQGCK 3
           MGN+    I G+G++R++  DG  R + GVRHV  LKKNLLS+G L+  GCK
Sbjct: 321 MGNDHALEIAGVGTIRLKMHDGTVRKIQGVRHVKGLKKNLLSVGQLDDLGCK 372


>gb|KHN13199.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94,
           partial [Glycine soja]
          Length = 344

 Score =  108 bits (269), Expect(2) = 5e-32
 Identities = 57/139 (41%), Positives = 82/139 (58%), Gaps = 2/139 (1%)
 Frame = -2

Query: 473 NSSGGATKKNVSCYWCKQKGHVKKDCKAFKEWLKKHPQADKSKSNGAQAGVAEAEPEETC 294
           + S    K N  C+ C+++GH K++C          P+  K K + ++ G A    EE+ 
Sbjct: 218 SKSRSKNKNNNKCHNCQKEGHWKRNC----------PELKKDKVSTSEFGGAAVVSEESD 267

Query: 293 --DVLTAQSGTAKLSDTWILDSGCTWHMSPRRDWFSTYRAMDGGSVLMGNNSVCRIVGIG 120
             +VL   S      D WILDS CT+HM+P RDWF+T++ +DGG VLMGN+  C I G G
Sbjct: 268 GGNVLFVSSNVN--DDDWILDSACTFHMTPNRDWFATFQNVDGGKVLMGNDGACSIAGKG 325

Query: 119 SVRIRNQDGVERTLTGVRH 63
           +V+I+  DG+ RTLT VR+
Sbjct: 326 TVQIKMNDGIVRTLTDVRY 344



 Score = 57.8 bits (138), Expect(2) = 5e-32
 Identities = 29/85 (34%), Positives = 49/85 (57%)
 Frame = -1

Query: 756 MKKQLYGLRMEEGTPILQHLNTFNRIASXXXXXXXXXXXXXXXXXXLCSLPPSYGHLVTT 577
           +KKQLY ++M EG  I +H++ FN++                    L SLP +Y + V T
Sbjct: 103 LKKQLYTMQMHEGESIHKHIDNFNQVVLSLKNIDVAVDDEDQAVLLLSSLPRAYDNFVDT 162

Query: 576 IMYGKETLELEDVRTVLQNNEILKR 502
           I++G+ +L +E+V+T LQ+ E+ +R
Sbjct: 163 IIFGRSSLSMEEVKTALQSWELKRR 187


>gb|KHN13198.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94,
           partial [Glycine soja]
          Length = 341

 Score =  108 bits (269), Expect(2) = 5e-32
 Identities = 57/139 (41%), Positives = 82/139 (58%), Gaps = 2/139 (1%)
 Frame = -2

Query: 473 NSSGGATKKNVSCYWCKQKGHVKKDCKAFKEWLKKHPQADKSKSNGAQAGVAEAEPEETC 294
           + S    K N  C+ C+++GH K++C          P+  K K + ++ G A    EE+ 
Sbjct: 215 SKSRSKNKNNNKCHNCQKEGHWKRNC----------PELKKDKVSTSEFGGAAVVSEESD 264

Query: 293 --DVLTAQSGTAKLSDTWILDSGCTWHMSPRRDWFSTYRAMDGGSVLMGNNSVCRIVGIG 120
             +VL   S      D WILDS CT+HM+P RDWF+T++ +DGG VLMGN+  C I G G
Sbjct: 265 GGNVLFVSSNVN--DDDWILDSACTFHMTPNRDWFATFQNVDGGKVLMGNDGACSIAGKG 322

Query: 119 SVRIRNQDGVERTLTGVRH 63
           +V+I+  DG+ RTLT VR+
Sbjct: 323 TVQIKMNDGIVRTLTDVRY 341



 Score = 57.8 bits (138), Expect(2) = 5e-32
 Identities = 29/85 (34%), Positives = 49/85 (57%)
 Frame = -1

Query: 756 MKKQLYGLRMEEGTPILQHLNTFNRIASXXXXXXXXXXXXXXXXXXLCSLPPSYGHLVTT 577
           +KKQLY ++M EG  I +H++ FN++                    L SLP +Y + V T
Sbjct: 100 LKKQLYTMQMHEGESIHKHIDNFNQVVLSLKNIDVAVDDEDQAVLLLSSLPRAYDNFVDT 159

Query: 576 IMYGKETLELEDVRTVLQNNEILKR 502
           I++G+ +L +E+V+T LQ+ E+ +R
Sbjct: 160 IIFGRSSLSMEEVKTALQSWELKRR 184


>emb|CAN80490.1| hypothetical protein VITISV_004703 [Vitis vinifera]
          Length = 777

 Score =  131 bits (329), Expect(2) = 1e-31
 Identities = 65/154 (42%), Positives = 96/154 (62%)
 Frame = -2

Query: 470 SSGGATKKNVSCYWCKQKGHVKKDCKAFKEWLKKHPQADKSKSNGAQAGVAEAEPEETCD 291
           S G    +NV CY C + G +++ C           Q +K+++ G+ A + +    ++ +
Sbjct: 115 SKGKKDYRNVKCYHCNKIGQIRRICP-------DRQQEEKTQAQGSAAIIDDGY--DSTE 165

Query: 290 VLTAQSGTAKLSDTWILDSGCTWHMSPRRDWFSTYRAMDGGSVLMGNNSVCRIVGIGSVR 111
           VLT +       + W+LDSGCT+HM PRRDWFS+Y+ ++GG +L+GNN  C +VGIG++ 
Sbjct: 166 VLTIRLNPNH--EEWVLDSGCTYHMCPRRDWFSSYQEVNGGKLLLGNNMSCNVVGIGTMA 223

Query: 110 IRNQDGVERTLTGVRHVPDLKKNLLSLGALEAQG 9
           I   DG  RTL  VRHVPDLK+NL+SLG L+  G
Sbjct: 224 INMHDGKTRTLKEVRHVPDLKRNLISLGTLDKSG 257



 Score = 33.1 bits (74), Expect(2) = 1e-31
 Identities = 20/68 (29%), Positives = 29/68 (42%)
 Frame = -1

Query: 729 MEEGTPILQHLNTFNRIASXXXXXXXXXXXXXXXXXXLCSLPPSYGHLVTTIMYGKETLE 550
           +EE  PI   L+ FN++                    L SLP S  H   T+ YGK+ + 
Sbjct: 24  IEESKPIDDALDEFNKLVLDLESLDIKVEDEDKAIILLNSLPKSLKHFKETLKYGKDDIT 83

Query: 549 LEDVRTVL 526
            +DV+  L
Sbjct: 84  FDDVQNAL 91


>gb|ACL97385.1| Gag-Pol polyprotein [Medicago truncatula]
          Length = 1305

 Score =  142 bits (358), Expect = 2e-31
 Identities = 72/172 (41%), Positives = 101/172 (58%), Gaps = 4/172 (2%)
 Frame = -2

Query: 506 RGXXXXXXXSGNSSGGATKK----NVSCYWCKQKGHVKKDCKAFKEWLKKHPQADKSKSN 339
           RG       SG+ + G +K     N+ CY C  KGHVKK+C   K+  +K+ +A  + S 
Sbjct: 203 RGRSTERGPSGSQNHGRSKSRRKNNIKCYGCGMKGHVKKECWNNKKNGEKNSEA--TTSQ 260

Query: 338 GAQAGVAEAEPEETCDVLTAQSGTAKLSDTWILDSGCTWHMSPRRDWFSTYRAMDGGSVL 159
           G  A  ++       +  T+  G  +L+D WI+DSG TWHM+P RDWF +Y  +  GSV 
Sbjct: 261 GCVASTSDDGEILYSEAATSSEGERQLNDVWIMDSGATWHMTPHRDWFYSYEPISEGSVY 320

Query: 158 MGNNSVCRIVGIGSVRIRNQDGVERTLTGVRHVPDLKKNLLSLGALEAQGCK 3
           MGN+    I G+G++R++  DG  R + GVRHV  LKKNLLS+G L+  GCK
Sbjct: 321 MGNDHALEIAGVGTIRLKMHDGTVRKIQGVRHVKGLKKNLLSVGQLDDLGCK 372


>emb|CAJ09951.2| putative gag-pol polyprotein [Citrus sinensis]
          Length = 1334

 Score =  108 bits (270), Expect(2) = 3e-31
 Identities = 58/149 (38%), Positives = 89/149 (59%), Gaps = 1/149 (0%)
 Frame = -2

Query: 452 KKNVSCYWCKQKGHVKKDCKAFKEWLKKHPQADKSKSNGAQAGVAEAEPEETCDVLTAQS 273
           KK   C++C+++GH  +DC     + KK  ++ +   + A A    ++  ++ D+L A +
Sbjct: 231 KKKRKCFYCRKEGHYIRDC-----FEKKKKESQEKSGDAAVASDDGSDGYQSADLLVASN 285

Query: 272 GTAKLSDTWILDSGCTWHMSPRRDWFSTYRAMDGGSVLMGNNSVCRIVGIG-SVRIRNQD 96
              K    W++DSGC++H+ P +  F  Y A+DGG VLMGNN+VC IVGI    R R   
Sbjct: 286 SNTK--GQWVIDSGCSFHLCPEKTLFYKYEAVDGGRVLMGNNNVCNIVGIWFCKRSRCLM 343

Query: 95  GVERTLTGVRHVPDLKKNLLSLGALEAQG 9
            + R+L  VRH P LK+NL+SLG L++ G
Sbjct: 344 ELLRSLHEVRHAPRLKRNLISLGMLDSLG 372



 Score = 54.7 bits (130), Expect(2) = 3e-31
 Identities = 36/105 (34%), Positives = 48/105 (45%), Gaps = 1/105 (0%)
 Frame = -1

Query: 756 MKKQLYGLRMEEGTPILQHLNTFNRIA-SXXXXXXXXXXXXXXXXXXLCSLPPSYGHLVT 580
           +KK+LY   M EG  I  H++TFN+I                     L SLP SY   V 
Sbjct: 105 LKKRLYTFSMREGVTIQDHIDTFNKIILDLEGVENVKICDEDKAFFLLSSLPKSYEGFVD 164

Query: 579 TIMYGKETLELEDVRTVLQNNEILKRTXXXXXXFRKLKRRCHKEE 445
           T++YG+ TL LEDV+  L + EI K           L  R  K++
Sbjct: 165 TMLYGRTTLTLEDVKASLSSKEIQKNCELETSNGEGLMARTEKKK 209


>gb|ABA96825.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
           Japonica Group]
          Length = 424

 Score =  102 bits (254), Expect(2) = 2e-30
 Identities = 52/148 (35%), Positives = 88/148 (59%)
 Frame = -2

Query: 452 KKNVSCYWCKQKGHVKKDCKAFKEWLKKHPQADKSKSNGAQAGVAEAEPEETCDVLTAQS 273
           +K   CY C + GH++++C   K+      + D   S  A+   +++   E   V   +S
Sbjct: 218 EKGARCYKCHEFGHIRRNCPLLKK------RKDGIASLAARGDDSDSSSHEILTVSNEKS 271

Query: 272 GTAKLSDTWILDSGCTWHMSPRRDWFSTYRAMDGGSVLMGNNSVCRIVGIGSVRIRNQDG 93
           G A     W+LDS  ++H++ +R+WFS+Y++ D G V +G+++  R+VG+G V+ +  DG
Sbjct: 272 GEA-----WMLDSASSYHVTSKREWFSSYKSGDFGVVYLGDDTSYRVVGVGDVKFKMYDG 326

Query: 92  VERTLTGVRHVPDLKKNLLSLGALEAQG 9
            E  L+ VRHVP L+K+L+SLG+L   G
Sbjct: 327 NEVLLSDVRHVPGLRKSLISLGSLHEIG 354



 Score = 58.5 bits (140), Expect(2) = 2e-30
 Identities = 27/77 (35%), Positives = 47/77 (61%)
 Frame = -1

Query: 756 MKKQLYGLRMEEGTPILQHLNTFNRIASXXXXXXXXXXXXXXXXXXLCSLPPSYGHLVTT 577
           +K+QLYGL+M+E + + +H++ FN++                    LCSLPPSY H+VT 
Sbjct: 104 LKQQLYGLQMQEESDLRKHVDVFNQLVVDLSKLDVKLDDEDKAIILLCSLPPSYEHVVTI 163

Query: 576 IMYGKETLELEDVRTVL 526
           + +GK+T++ E + ++L
Sbjct: 164 LTHGKDTIKTEIISSLL 180


>gb|AER13159.1| putative Ty-1 copia retrotransposon [Phaseolus vulgaris]
          Length = 867

 Score =  138 bits (348), Expect = 4e-30
 Identities = 74/155 (47%), Positives = 97/155 (62%), Gaps = 1/155 (0%)
 Frame = -2

Query: 470 SSGGATKKNVSCYWCKQKGHVKKDCKAFKEWLKKHPQADKSKSNGAQAGVAEAEPEETCD 291
           S G A  K+  C +C +KGH KKDC          P+  K +     A VAE + +   D
Sbjct: 161 SKGRAVAKD-ECAFCHEKGHWKKDC----------PKLQKKEKVLQDANVAECKSDVESD 209

Query: 290 VLTAQSGTAKLS-DTWILDSGCTWHMSPRRDWFSTYRAMDGGSVLMGNNSVCRIVGIGSV 114
           +    S +A L  D WILDSGCT+HM P RDWF  ++ +DGG V MGN++ C+ VGIGS+
Sbjct: 210 ISLIVSLSASLYLDEWILDSGCTYHMCPIRDWFFEFQELDGGVVYMGNDNPCKTVGIGSI 269

Query: 113 RIRNQDGVERTLTGVRHVPDLKKNLLSLGALEAQG 9
           ++RN DG  R L  VR+VP LKKNL+SLGALE++G
Sbjct: 270 KLRNHDGSTRILRDVRYVPKLKKNLISLGALESKG 304


>emb|CDN96898.1| putative Ty-1 copia retrotransposon [Phaseolus vulgaris]
          Length = 813

 Score =  137 bits (346), Expect = 6e-30
 Identities = 70/156 (44%), Positives = 93/156 (59%), Gaps = 1/156 (0%)
 Frame = -2

Query: 473 NSSGGATKKNVSCYWCKQKGHVKKDCKAFKEWLKKHPQADKSKSNGAQAGVAEAEPEETC 294
           + S G       C +C +KGH KKDC          P+  K +     A VAE + +   
Sbjct: 158 SKSKGRVVAKDECAFCHEKGHWKKDC----------PKLQKKEKVPQDANVAECKSDVES 207

Query: 293 DV-LTAQSGTAKLSDTWILDSGCTWHMSPRRDWFSTYRAMDGGSVLMGNNSVCRIVGIGS 117
           D+ L      +   D WILDSGCT+HM P RDWF  ++ +DGG V MGN++ C+ VGIGS
Sbjct: 208 DISLIVSLSASSYPDEWILDSGCTYHMCPIRDWFFEFQELDGGVVYMGNDNPCKTVGIGS 267

Query: 116 VRIRNQDGVERTLTGVRHVPDLKKNLLSLGALEAQG 9
           +++RN DG  R L  VR+VP LKKNL+SLGALE++G
Sbjct: 268 IKLRNHDGSTRILRDVRYVPKLKKNLISLGALESKG 303


>gb|AAD23679.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
          Length = 838

 Score =  117 bits (292), Expect(2) = 2e-29
 Identities = 58/156 (37%), Positives = 89/156 (57%)
 Frame = -2

Query: 473 NSSGGATKKNVSCYWCKQKGHVKKDCKAFKEWLKKHPQADKSKSNGAQAGVAEAEPEETC 294
           + S   +++   C+ C ++GH KK C  +KE  KK   ++K +S+      A+A      
Sbjct: 232 SQSRSKSREKKVCWVCGKEGHFKKQCYVWKEKNKKGNNSEKGESSNVIGQAADAAALAVR 291

Query: 293 DVLTAQSGTAKLSDTWILDSGCTWHMSPRRDWFSTYRAMDGGSVLMGNNSVCRIVGIGSV 114
           +   A +   ++ + WI+D+GC++HM+PRRDWF  +     G V M N +   I GIGS+
Sbjct: 292 EESNADN--QEVDNEWIMDTGCSFHMTPRRDWFVEFDESQTGRVKMANQTYSEIKGIGSI 349

Query: 113 RIRNQDGVERTLTGVRHVPDLKKNLLSLGALEAQGC 6
           RI+N D     L  VR+VP + KNL+S+G LE QGC
Sbjct: 350 RIQNDDNTTVLLKNVRYVPSMSKNLISMGTLEDQGC 385



 Score = 40.0 bits (92), Expect(2) = 2e-29
 Identities = 21/79 (26%), Positives = 39/79 (49%)
 Frame = -1

Query: 756 MKKQLYGLRMEEGTPILQHLNTFNRIASXXXXXXXXXXXXXXXXXXLCSLPPSYGHLVTT 577
           +K++LYG +M +   I +++N F ++ S                  L SLP  +  L  T
Sbjct: 115 LKQRLYGYKMSDSMTIEENVNDFFKLISDLENVKVSVPDEDQAIVLLMSLPKQFDQLKDT 174

Query: 576 IMYGKETLELEDVRTVLQN 520
           + YGK TL L+++   +++
Sbjct: 175 LKYGKTTLALDEITGAIRS 193


>gb|ABA99474.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
           Japonica Group]
          Length = 983

 Score =  110 bits (276), Expect(2) = 4e-29
 Identities = 61/163 (37%), Positives = 95/163 (58%), Gaps = 4/163 (2%)
 Frame = -2

Query: 479 SGNSSGGATK---KNVSCYWCKQKGHVKKDCKAFKEWLKKHPQ-ADKSKSNGAQAGVAEA 312
           S +S  G +K   K  S  + K+  H   +C   ++  K+  +   K K       V   
Sbjct: 219 SSSSYRGRSKSRGKYKSYKYYKRDRHDISECWKLQDKDKRTGKYVPKGKKEKEGKAVVVT 278

Query: 311 EPEETCDVLTAQSGTAKLSDTWILDSGCTWHMSPRRDWFSTYRAMDGGSVLMGNNSVCRI 132
           + +   ++L A +G A+ SD WILD+ CT HM P RDWF+TY A+ GG+V MG+++ C +
Sbjct: 279 DGKSDAELLVAYAGCAQTSDQWILDTACTNHMCPNRDWFATYEALQGGTVFMGDDTPCEV 338

Query: 131 VGIGSVRIRNQDGVERTLTGVRHVPDLKKNLLSLGALEAQGCK 3
             IG+V+I+  DG  RTL+ V H+P+LK++L+SL  L+ +G K
Sbjct: 339 ADIGTVQIKMFDGCIRTLSDVWHIPNLKRSLISLCTLDRKGYK 381



 Score = 45.4 bits (106), Expect(2) = 4e-29
 Identities = 23/85 (27%), Positives = 43/85 (50%)
 Frame = -1

Query: 756 MKKQLYGLRMEEGTPILQHLNTFNRIASXXXXXXXXXXXXXXXXXXLCSLPPSYGHLVTT 577
           +K++L+  ++++   ++ HL+ F  I +                  LCSLP SY +   T
Sbjct: 102 LKQKLFLHKLQDDESVMDHLSAFKEIVTDLESMEVKYDEEDLGLILLCSLPSSYANFRDT 161

Query: 576 IMYGKETLELEDVRTVLQNNEILKR 502
           I+Y ++TL L++V   L   E +K+
Sbjct: 162 ILYSRDTLTLKEVYDTLHAKEKMKK 186