BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Ophiopogon21_contig00003622
         (1684 letters)

Database: ./nr 
           77,306,371 sequences; 28,104,191,420 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_010914759.1| PREDICTED: CRS2-associated factor 2, chlorop...   680   0.0  
ref|XP_010914757.1| PREDICTED: CRS2-associated factor 2, chlorop...   674   0.0  
ref|XP_009381439.1| PREDICTED: CRS2-associated factor 2, chlorop...   613   e-172
ref|XP_011045289.1| PREDICTED: CRS2-associated factor 2, chlorop...   605   e-170
ref|XP_002315689.2| hypothetical protein POPTR_0010s05230g [Popu...   600   e-169
ref|XP_002267079.1| PREDICTED: CRS2-associated factor 2, chlorop...   600   e-169
ref|XP_010026662.1| PREDICTED: CRS2-associated factor 2, chlorop...   595   e-167
ref|XP_012085424.1| PREDICTED: CRS2-associated factor 2, chlorop...   594   e-167
ref|XP_007227482.1| hypothetical protein PRUPE_ppa003604mg [Prun...   592   e-166
ref|XP_008221844.1| PREDICTED: CRS2-associated factor 2, chlorop...   587   e-165
ref|XP_007044701.1| RNA-binding CRS1 / YhbY (CRM) domain-contain...   587   e-164
ref|XP_010100435.1| CRS2-associated factor 2 [Morus notabilis] g...   585   e-164
ref|XP_008389676.1| PREDICTED: CRS2-associated factor 2, chlorop...   585   e-164
ref|XP_002525395.1| conserved hypothetical protein [Ricinus comm...   583   e-163
ref|XP_008446191.1| PREDICTED: CRS2-associated factor 2, chlorop...   583   e-163
gb|ADN33825.1| RNA splicing factor [Cucumis melo subsp. melo]         583   e-163
ref|NP_001105669.1| CRS2-associated factor 2, chloroplastic prec...   581   e-163
ref|XP_012479367.1| PREDICTED: CRS2-associated factor 2, chlorop...   581   e-163
ref|NP_001042896.1| Os01g0323300 [Oryza sativa Japonica Group] g...   580   e-162
gb|EAY73777.1| hypothetical protein OsI_01650 [Oryza sativa Indi...   580   e-162

>ref|XP_010914759.1| PREDICTED: CRS2-associated factor 2, chloroplastic isoform X2 [Elaeis
            guineensis]
          Length = 592

 Score =  680 bits (1754), Expect = 0.0
 Identities = 348/528 (65%), Positives = 404/528 (76%), Gaps = 20/528 (3%)
 Frame = -3

Query: 1565 HNRTNYYKPLPKSPGAVVSGDGDRAVVVGSSGISYLLPNAPFEFQFSYSETPKAPPLAIR 1386
            HNR+ YYKP+  S G + +    R VVVG SG+SYLLP APFEFQFSYSETPK  PLAIR
Sbjct: 72   HNRSRYYKPV--SDGVLAAEADGRTVVVGPSGVSYLLPGAPFEFQFSYSETPKVKPLAIR 129

Query: 1385 EPAFLPFAPPSMARPWTGKAPLVSXXXXXXXXKIXXXXXXXXXXXXXXXXXRIAGRKVDD 1206
            EPAFLPFAPP+M RPWTGKAPL+S        K                     G KV +
Sbjct: 130  EPAFLPFAPPTMPRPWTGKAPLLSKKDKERKKKKIRLFEPLGQPEKVEEEE---GAKVME 186

Query: 1205 LGRCSA------GDGRRKEEILGEPLMRREVRELVRPWLSKNRQVNLGRDGLTHNMLEMI 1044
            + R +        DGR +EEILGEPL R E+R L++P +S NRQVNLGRDGLTHNMLE I
Sbjct: 187  MARRAVQLRRYPNDGRTREEILGEPLTRVEIRALIKPSVSSNRQVNLGRDGLTHNMLESI 246

Query: 1043 HAHWKRQEVCKVRCRGVPTVDMDNVCYHLEEKTGGKIIHRIGGVVYLFRGRNYNPRTRPQ 864
            H+HW+RQE+CKVRCRGVPTVDMDN+C+HLEEKT GKIIHR+GGVVYLFRGRNY+PRTRP+
Sbjct: 247  HSHWRRQEICKVRCRGVPTVDMDNICHHLEEKTYGKIIHRVGGVVYLFRGRNYDPRTRPR 306

Query: 863  YPIMLWKPAAPVYPKLIQDAPEGLSKVDADEFRRKGKKLLPICKLAKNGIYLNLVKDVRD 684
            YPIMLWKPAAPVYPKLIQDAPEGL+K++ADE R+KG+ LLPICKLAKNGIY+NLVKDVRD
Sbjct: 307  YPIMLWKPAAPVYPKLIQDAPEGLTKIEADELRKKGQNLLPICKLAKNGIYINLVKDVRD 366

Query: 683  AFEGSPLVKVNCQGMHTSDYKKIGAKLKELVPCVLLSFDEEQILMWRGNNWKPRYLAPIP 504
            AFEGS LVKVNCQGMH SDYKK+GAKLKELVPCVLLSFD EQILMWRG +WK RY API 
Sbjct: 367  AFEGSELVKVNCQGMHASDYKKLGAKLKELVPCVLLSFDNEQILMWRGRDWKSRYRAPIS 426

Query: 503  SVTKLKINDAGTSSDMKDS--SNGISEECPTKQEVTRPKMFLLWKRALDSHKALLLDDNT 330
            SV+KL   D+G SS + +S  SN +S+ C TK++++ PKM  LWKRA+DS KALLLD+ T
Sbjct: 427  SVSKLSQTDSGVSSGLDNSGRSNDVSDNCTTKKQLSSPKMLSLWKRAIDSSKALLLDE-T 485

Query: 329  ELSPDSLLERVEEFQSMSQASEHSYPALIMSSSEGAD------------NAERSSNEDDG 186
            ELSPDSLL+RVEEF+ MSQA+EHSYPALI+ S    D             AE   N DD 
Sbjct: 486  ELSPDSLLQRVEEFEGMSQATEHSYPALILPSENEPDVSIATHNARFKTEAESVHNNDD- 544

Query: 185  DKFNDMDRSSEDFEDYDIDVTDSFEDVDPSVPYGSLPVDSLAERLSTD 42
            D+F + D   ED+ED++ D  DSFE+V+ SVP+GSLPVDSLAERLS +
Sbjct: 545  DEFIERDPYDEDYEDFENDSMDSFEEVESSVPFGSLPVDSLAERLSLE 592


>ref|XP_010914757.1| PREDICTED: CRS2-associated factor 2, chloroplastic isoform X1 [Elaeis
            guineensis]
          Length = 595

 Score =  674 bits (1740), Expect = 0.0
 Identities = 348/531 (65%), Positives = 404/531 (76%), Gaps = 23/531 (4%)
 Frame = -3

Query: 1565 HNRTNYYKPLPKSPGAVVSGDGDRAVVVGSSGISYLLPNAPFEFQFSYSETPKAPPLAIR 1386
            HNR+ YYKP+  S G + +    R VVVG SG+SYLLP APFEFQFSYSETPK  PLAIR
Sbjct: 72   HNRSRYYKPV--SDGVLAAEADGRTVVVGPSGVSYLLPGAPFEFQFSYSETPKVKPLAIR 129

Query: 1385 EPAFLPFAPPSMARPWTGKAPLVSXXXXXXXXKIXXXXXXXXXXXXXXXXXRIAGRKVDD 1206
            EPAFLPFAPP+M RPWTGKAPL+S        K                     G KV +
Sbjct: 130  EPAFLPFAPPTMPRPWTGKAPLLSKKDKERKKKKIRLFEPLGQPEKVEEEE---GAKVME 186

Query: 1205 LGRCSA------GDGRRKEEILGEPLMRREVRELVRPWLSKNRQVNLGRDGLTHNMLEMI 1044
            + R +        DGR +EEILGEPL R E+R L++P +S NRQVNLGRDGLTHNMLE I
Sbjct: 187  MARRAVQLRRYPNDGRTREEILGEPLTRVEIRALIKPSVSSNRQVNLGRDGLTHNMLESI 246

Query: 1043 HAHWKRQEVCKVRCRGVPTVDMDNVCYHLEEKTGGKIIHRIGGVVYLFRGRNYNPRTRPQ 864
            H+HW+RQE+CKVRCRGVPTVDMDN+C+HLEEKT GKIIHR+GGVVYLFRGRNY+PRTRP+
Sbjct: 247  HSHWRRQEICKVRCRGVPTVDMDNICHHLEEKTYGKIIHRVGGVVYLFRGRNYDPRTRPR 306

Query: 863  YPIMLWKPAAPVYPKLIQDAPEGLSKVDADEFRRKGKKLLPICKLAKNGIYLNLVKDVRD 684
            YPIMLWKPAAPVYPKLIQDAPEGL+K++ADE R+KG+ LLPICKLAKNGIY+NLVKDVRD
Sbjct: 307  YPIMLWKPAAPVYPKLIQDAPEGLTKIEADELRKKGQNLLPICKLAKNGIYINLVKDVRD 366

Query: 683  AFEGSPLVKVNCQGMHTSDYKKIGAKLK---ELVPCVLLSFDEEQILMWRGNNWKPRYLA 513
            AFEGS LVKVNCQGMH SDYKK+GAKLK   ELVPCVLLSFD EQILMWRG +WK RY A
Sbjct: 367  AFEGSELVKVNCQGMHASDYKKLGAKLKVHEELVPCVLLSFDNEQILMWRGRDWKSRYRA 426

Query: 512  PIPSVTKLKINDAGTSSDMKDS--SNGISEECPTKQEVTRPKMFLLWKRALDSHKALLLD 339
            PI SV+KL   D+G SS + +S  SN +S+ C TK++++ PKM  LWKRA+DS KALLLD
Sbjct: 427  PISSVSKLSQTDSGVSSGLDNSGRSNDVSDNCTTKKQLSSPKMLSLWKRAIDSSKALLLD 486

Query: 338  DNTELSPDSLLERVEEFQSMSQASEHSYPALIMSSSEGAD------------NAERSSNE 195
            + TELSPDSLL+RVEEF+ MSQA+EHSYPALI+ S    D             AE   N 
Sbjct: 487  E-TELSPDSLLQRVEEFEGMSQATEHSYPALILPSENEPDVSIATHNARFKTEAESVHNN 545

Query: 194  DDGDKFNDMDRSSEDFEDYDIDVTDSFEDVDPSVPYGSLPVDSLAERLSTD 42
            DD D+F + D   ED+ED++ D  DSFE+V+ SVP+GSLPVDSLAERLS +
Sbjct: 546  DD-DEFIERDPYDEDYEDFENDSMDSFEEVESSVPFGSLPVDSLAERLSLE 595


>ref|XP_009381439.1| PREDICTED: CRS2-associated factor 2, chloroplastic [Musa acuminata
            subsp. malaccensis]
          Length = 586

 Score =  613 bits (1581), Expect = e-172
 Identities = 317/524 (60%), Positives = 384/524 (73%), Gaps = 21/524 (4%)
 Frame = -3

Query: 1565 HNRTNYYKPLPKSPGAVVSGDGDRAVVVGSSGISYLLPNAPFEFQFSYSETPKAPPLAIR 1386
            H R+ YYKP+  S G V   D  R+VVVG SG+SY LP APF+FQFSYSETPKA PLA+R
Sbjct: 63   HFRSRYYKPV--SDGVVTGDDSGRSVVVGPSGVSYRLPGAPFDFQFSYSETPKAKPLALR 120

Query: 1385 EPAFLPFAPPSMARPWTGKAPLVSXXXXXXXXKIXXXXXXXXXXXXXXXXXRIA--GRKV 1212
            EPAFLPF PP+M RPWTGKAPL+S        KI                      G+ +
Sbjct: 121  EPAFLPFTPPTMNRPWTGKAPLLSKKDKERKKKIRLFEPLGHPDDGEDDEVADEEEGKVM 180

Query: 1211 DDLGRCSA-----GDGRRKEEILGEPLMRREVRELVRPWLSKNRQVNLGRDGLTHNMLEM 1047
            +  GR         DGR +EEILG PL R EVR LV+P LS NRQVNLGRDGLTHNMLE+
Sbjct: 181  EMAGRAVQLGWYPKDGRSREEILGPPLKRWEVRALVKPCLSHNRQVNLGRDGLTHNMLEL 240

Query: 1046 IHAHWKRQEVCKVRCRGVPTVDMDNVCYHLEEKTGGKIIHRIGGVVYLFRGRNYNPRTRP 867
            IH+HW+RQ VCKVRCRGVPTVDMDN+C+HLEEKTGGKII+R+GG+VYLFRGRNY+ RTRP
Sbjct: 241  IHSHWRRQPVCKVRCRGVPTVDMDNICHHLEEKTGGKIIYRVGGIVYLFRGRNYDSRTRP 300

Query: 866  QYPIMLWKPAAPVYPKLIQDAPEGLSKVDADEFRRKGKKLLPICKLAKNGIYLNLVKDVR 687
            +YP+MLWKPA PVYPKLIQ+APEGL+K +ADE R+KG+ L+PICKLAKNGIY+NLVKDVR
Sbjct: 301  KYPVMLWKPATPVYPKLIQEAPEGLTKTEADEMRKKGENLMPICKLAKNGIYINLVKDVR 360

Query: 686  DAFEGSPLVKVNCQGMHTSDYKKIGAKLKELVPCVLLSFDEEQILMWRGNNWKPRYLAPI 507
            DAFE S LVKVNCQGMH SDYKK+GAKLKELVPCVLLSFDEE+ILMWRG +WK RY  P 
Sbjct: 361  DAFEESELVKVNCQGMHASDYKKLGAKLKELVPCVLLSFDEEKILMWRGKDWKSRYQVPF 420

Query: 506  PSVTKLKINDAGTSSDMKDS--SNGISEECPTKQEVTRPKMFLLWKRALDSHKALLLDDN 333
                +    ++  SSD+ DS  S+  S E  +  E+   KM  LWKRA+++ KA LLDD 
Sbjct: 421  SIDMRHHHTESDNSSDLNDSDESSVSSVESISSSEILSTKMLSLWKRAVETGKAFLLDD- 479

Query: 332  TELSPDSLLERVEEFQSMSQASEHSYPALIMSSSEGADNAERS--------SNED--DGD 183
            T+LSPDSLL+RVE+F+ +SQ  EHSY ALI+   +  D++E S        +N+D  D D
Sbjct: 480  TKLSPDSLLKRVEDFEGLSQIVEHSYQALILPGGKDPDDSEDSLEQRLATETNDDHNDND 539

Query: 182  KFNDMDRSSEDFE--DYDIDVTDSFEDVDPSVPYGSLPVDSLAE 57
               +MD S+ D+E  +Y  D+  SF++++P+VP+GSLPVDS+AE
Sbjct: 540  GNREMDTSNRDYEYDNYSDDIYGSFDEIEPTVPFGSLPVDSIAE 583


>ref|XP_011045289.1| PREDICTED: CRS2-associated factor 2, chloroplastic [Populus
            euphratica]
          Length = 559

 Score =  605 bits (1561), Expect = e-170
 Identities = 312/515 (60%), Positives = 384/515 (74%), Gaps = 10/515 (1%)
 Frame = -3

Query: 1565 HNRTNYYKPLPKSPGAVVSGDGDRAVVVGSSGISYLLPNAPFEFQFSYSETPKAPPLAIR 1386
            H RT YYKP+ K  G V++ DGDR+V+VG SG+SYLLP APFEFQFSYSETPK  PLAIR
Sbjct: 63   HLRTKYYKPV-KDGGGVIASDGDRSVLVGDSGVSYLLPGAPFEFQFSYSETPKVKPLAIR 121

Query: 1385 EPAFLPFAPPSMARPWTGKAPLVSXXXXXXXXKIXXXXXXXXXXXXXXXXXRIAGRK--- 1215
            EPAFLPFAPP+M RPWTGK PL +                             AG+K   
Sbjct: 122  EPAFLPFAPPTMPRPWTGKPPLKTSKKKIPVFDSFNPPP--------------AGKKGVK 167

Query: 1214 -VDDLGRCSAG----DGRRKEEILGEPLMRREVRELVRPWLSKNRQVNLGRDGLTHNMLE 1050
             V+  G    G    +G+ +EEILGEPL   E++ L++P LS NRQVNLGRDGLTHNMLE
Sbjct: 168  YVEMPGPYPFGKFPEEGKSREEILGEPLKTWEIKMLIKPHLSDNRQVNLGRDGLTHNMLE 227

Query: 1049 MIHAHWKRQEVCKVRCRGVPTVDMDNVCYHLEEKTGGKIIHRIGGVVYLFRGRNYNPRTR 870
            ++H+HWKR+ VCKVRC+GVPTVDMDNVC HLEEKTGGKIIHR+GGVVYLFRGRNYN RTR
Sbjct: 228  LVHSHWKRRRVCKVRCKGVPTVDMDNVCRHLEEKTGGKIIHRVGGVVYLFRGRNYNYRTR 287

Query: 869  PQYPIMLWKPAAPVYPKLIQDAPEGLSKVDADEFRRKGKKLLPICKLAKNGIYLNLVKDV 690
            PQYP+MLWKPAAPVYPKLIQ+APEGL+K +ADEFR+KGK LLPICKLAKNG+Y+ LV+DV
Sbjct: 288  PQYPVMLWKPAAPVYPKLIQEAPEGLTKAEADEFRKKGKNLLPICKLAKNGVYITLVRDV 347

Query: 689  RDAFEGSPLVKVNCQGMHTSDYKKIGAKLKELVPCVLLSFDEEQILMWRGNNWKPRYLAP 510
            R AFEGSPLVKV+C+GM  SDYKK+GAKLK+LVPCVLLSFD+EQILMWRG +WK  Y   
Sbjct: 348  RTAFEGSPLVKVDCKGMEPSDYKKLGAKLKDLVPCVLLSFDDEQILMWRGQDWKSMYPEA 407

Query: 509  IPSVTKLKINDAGTSSDMKDSSNGISEECPTKQEVTRPKMFLLWKRALDSHKALLLDDNT 330
             PS++     D  + SD    S+   +    K   + PKM LLWKRAL+S+KA+LLD+  
Sbjct: 408  QPSISFPAELDIASGSDDSGKSDDDCDNSDAKIVSSSPKMMLLWKRALESNKAILLDE-I 466

Query: 329  ELSPDSLLERVEEFQSMSQASEHSYPALIMSSSEGADNAERSSNEDD--GDKFNDMDRSS 156
            ++ PD+LL +VEEF+ +SQA+EHSYPAL+MS+ +G+ N+  S+ EDD   +KF++ D  S
Sbjct: 467  DMGPDALLRKVEEFEGISQATEHSYPALVMSTEDGSSNS-ISTFEDDSHSEKFSEDDMYS 525

Query: 155  EDFEDYDIDVTDSFEDVDPSVPYGSLPVDSLAERL 51
            +D E YD   ++SFE+++ S P GSL +D +A +L
Sbjct: 526  DD-EYYD---SESFEELETSAPPGSLSIDLIAGKL 556


>ref|XP_002315689.2| hypothetical protein POPTR_0010s05230g [Populus trichocarpa]
            gi|550329113|gb|EEF01860.2| hypothetical protein
            POPTR_0010s05230g [Populus trichocarpa]
          Length = 557

 Score =  600 bits (1548), Expect = e-169
 Identities = 311/515 (60%), Positives = 380/515 (73%), Gaps = 10/515 (1%)
 Frame = -3

Query: 1565 HNRTNYYKPLPKSPGAVVSGDGDRAVVVGSSGISYLLPNAPFEFQFSYSETPKAPPLAIR 1386
            H RT YYKP+ K  G V++ DGDR+V+VG SG+SYLLP APFEFQFSYSETPK  PLAIR
Sbjct: 61   HLRTKYYKPV-KDGGGVIASDGDRSVLVGDSGVSYLLPGAPFEFQFSYSETPKVKPLAIR 119

Query: 1385 EPAFLPFAPPSMARPWTGKAPLVSXXXXXXXXKIXXXXXXXXXXXXXXXXXRIAGRK--- 1215
            EPAFLPFAPP+M RPWTGK PL +                             AG+K   
Sbjct: 120  EPAFLPFAPPTMPRPWTGKPPLKTSKKKIPVFDSFNPPP--------------AGKKGVK 165

Query: 1214 -VDDLGRCSAG----DGRRKEEILGEPLMRREVRELVRPWLSKNRQVNLGRDGLTHNMLE 1050
             V+  G    G    +G+ +EEILGEPL   E++ L++P LS NRQVNLG DGLTHNMLE
Sbjct: 166  YVEMPGPYPFGKFPEEGKSREEILGEPLKTWEIKLLIKPHLSDNRQVNLGEDGLTHNMLE 225

Query: 1049 MIHAHWKRQEVCKVRCRGVPTVDMDNVCYHLEEKTGGKIIHRIGGVVYLFRGRNYNPRTR 870
            ++H+HWKR+ VCKVRC+GVPTVDMDNVC HLEEKTGGKIIHR+GGVVYLFRGRNYN RTR
Sbjct: 226  LVHSHWKRRRVCKVRCKGVPTVDMDNVCRHLEEKTGGKIIHRVGGVVYLFRGRNYNYRTR 285

Query: 869  PQYPIMLWKPAAPVYPKLIQDAPEGLSKVDADEFRRKGKKLLPICKLAKNGIYLNLVKDV 690
            PQYP+MLWKPA PVYPKLIQ+APEGL+K  ADEFR+KGK LLPICKLAKNG+Y+ LV+DV
Sbjct: 286  PQYPVMLWKPATPVYPKLIQEAPEGLTKAQADEFRKKGKNLLPICKLAKNGVYITLVRDV 345

Query: 689  RDAFEGSPLVKVNCQGMHTSDYKKIGAKLKELVPCVLLSFDEEQILMWRGNNWKPRYLAP 510
            R AFEGSPLVKV+C+GM  SDYKK+GAKLK+LVPCVLLSFD+EQILMWRG +WK  Y   
Sbjct: 346  RAAFEGSPLVKVDCKGMEPSDYKKLGAKLKDLVPCVLLSFDDEQILMWRGQDWKSMYPEA 405

Query: 509  IPSVTKLKINDAGTSSDMKDSSNGISEECPTKQEVTRPKMFLLWKRALDSHKALLLDDNT 330
             PS++     D  + SD    S+   +    K   + PKM LLWK AL+S+KA+LLD+  
Sbjct: 406  RPSISFPAELDIASGSDDSGKSDDDCDNSDAKILSSSPKMMLLWKHALESNKAILLDE-I 464

Query: 329  ELSPDSLLERVEEFQSMSQASEHSYPALIMSSSEGADNAERSSNEDD--GDKFNDMDRSS 156
            +L PD+LL +VEEF+ +SQA+EHSYPAL+MSS +G+ N+  S+ EDD   + F++ D  S
Sbjct: 465  DLGPDALLTKVEEFEGISQATEHSYPALVMSSEDGSSNS-ISTFEDDSHSENFSEDDMYS 523

Query: 155  EDFEDYDIDVTDSFEDVDPSVPYGSLPVDSLAERL 51
            +D E YD   ++SFE+++ S P GSL +D +AE+L
Sbjct: 524  DD-EYYD---SESFEELETSAPPGSLSIDLIAEKL 554


>ref|XP_002267079.1| PREDICTED: CRS2-associated factor 2, chloroplastic [Vitis vinifera]
            gi|297739063|emb|CBI28552.3| unnamed protein product
            [Vitis vinifera]
          Length = 561

 Score =  600 bits (1548), Expect = e-169
 Identities = 304/513 (59%), Positives = 370/513 (72%), Gaps = 4/513 (0%)
 Frame = -3

Query: 1568 VHNRTNYYKPLPKSPGAVVSGDGDRAVVVGSSGISYLLPNAPFEFQFSYSETPKAPPLAI 1389
            VH+R+ YYKP+      V++ DGDR+VV+G SG+SYLLP APFEFQFSYSETPKA PLAI
Sbjct: 65   VHHRSKYYKPVSDG---VIASDGDRSVVIGESGVSYLLPGAPFEFQFSYSETPKAKPLAI 121

Query: 1388 REPAFLPFAPPSMARPWTGKAPLVSXXXXXXXXKIXXXXXXXXXXXXXXXXXRIAGRKVD 1209
            REPAFLPFAPP+M RPWTGKAPL                                 ++V+
Sbjct: 122  REPAFLPFAPPTMPRPWTGKAPLKKSKKKIPLFDSFNPPPPGTKGV----------KRVE 171

Query: 1208 DLGRCSAG----DGRRKEEILGEPLMRREVRELVRPWLSKNRQVNLGRDGLTHNMLEMIH 1041
              G    G    +GR +EEILGEPL + E+R LV+P+LS NRQVNLGRDGLTHNMLE+IH
Sbjct: 172  MPGPFPLGKFPVEGRTREEILGEPLSKAEIRMLVKPYLSHNRQVNLGRDGLTHNMLELIH 231

Query: 1040 AHWKRQEVCKVRCRGVPTVDMDNVCYHLEEKTGGKIIHRIGGVVYLFRGRNYNPRTRPQY 861
            +HWKRQ VCKVRC+GVPT+DMDNVC+HLEEKTGGKIIHR+GGVVYLFRGRNYN RTRPQY
Sbjct: 232  SHWKRQRVCKVRCKGVPTIDMDNVCHHLEEKTGGKIIHRVGGVVYLFRGRNYNYRTRPQY 291

Query: 860  PIMLWKPAAPVYPKLIQDAPEGLSKVDADEFRRKGKKLLPICKLAKNGIYLNLVKDVRDA 681
            P+MLWKPAAPVYPKLIQ+APEGL+K +ADE R KGK L+PIC+L KNG+Y++LVKDVRDA
Sbjct: 292  PVMLWKPAAPVYPKLIQEAPEGLTKFEADELRMKGKNLIPICRLVKNGVYISLVKDVRDA 351

Query: 680  FEGSPLVKVNCQGMHTSDYKKIGAKLKELVPCVLLSFDEEQILMWRGNNWKPRYLAPIPS 501
            FEGSPLVK++C+GMH SDYKKIGAKLKELVPCVLLSFD+EQIL WRG+ WK  Y    PS
Sbjct: 352  FEGSPLVKIDCKGMHASDYKKIGAKLKELVPCVLLSFDDEQILTWRGHGWKSMYQG-APS 410

Query: 500  VTKLKINDAGTSSDMKDSSNGISEECPTKQEVTRPKMFLLWKRALDSHKALLLDDNTELS 321
                 + D  +  +             TK     PKM  LWK A++S KALLLD+ T L 
Sbjct: 411  FLIPVVADVASGLEGSGIPKSNHHRLDTKAVSASPKMMSLWKSAIESSKALLLDE-TGLG 469

Query: 320  PDSLLERVEEFQSMSQASEHSYPALIMSSSEGADNAERSSNEDDGDKFNDMDRSSEDFED 141
            PD+LL+ VEEF+ +SQA+EHSYPAL+MSS +G    +      + + +++ D    D +D
Sbjct: 470  PDALLKVVEEFEGISQATEHSYPALVMSSEDGTGGTKAEYEGYNSEDYSE-DEMYNDDDD 528

Query: 140  YDIDVTDSFEDVDPSVPYGSLPVDSLAERLSTD 42
             +  V +S E+++  VP GSLPVD LA++L  +
Sbjct: 529  DEYLVNESLEEMESPVPLGSLPVDLLAKQLGEE 561


>ref|XP_010026662.1| PREDICTED: CRS2-associated factor 2, chloroplastic, partial
            [Eucalyptus grandis]
          Length = 514

 Score =  595 bits (1535), Expect = e-167
 Identities = 312/520 (60%), Positives = 371/520 (71%), Gaps = 12/520 (2%)
 Frame = -3

Query: 1565 HNRTNYYKPL-PKSPGAVVSGDGDRAVVVGSSGISYLLPNAPFEFQFSYSETPKAPPLAI 1389
            H  + YYKP+ P SP  VVS DGDR+VVVG SG+SYLLP APFEFQ+SYSETP A PLA+
Sbjct: 14   HRNSRYYKPIRPDSP--VVSSDGDRSVVVGESGVSYLLPGAPFEFQYSYSETPSARPLAM 71

Query: 1388 REPAFLPFAPPSMARPWTGKAPLVSXXXXXXXXKIXXXXXXXXXXXXXXXXXRIAGRKVD 1209
            REPAFLPFAPP+M RPWTGKAPL           +                  + G    
Sbjct: 72   REPAFLPFAPPTMPRPWTGKAPLKGSKEKKKKIPLFDSFDPPPAGKKGVKYVEMPGPF-- 129

Query: 1208 DLGRCSAGDGRRKEEILGEPLMRREVRELVRPWLSKNRQVNLGRDGLTHNMLEMIHAHWK 1029
             LG+    DGR +EEILGEPL R E++ LV+P LS NRQVNLGRDGLTHNMLE++H+HWK
Sbjct: 130  HLGQ-RPKDGRTREEILGEPLKRWEIKMLVKPHLSDNRQVNLGRDGLTHNMLELVHSHWK 188

Query: 1028 RQEVCKVRCRGVPTVDMDNVCYHLEEKTGGKIIHRIGGVVYLFRGRNYNPRTRPQYPIML 849
            R+ VCKVRCRGVPTVDMDNVC  LEEKTGG+IIHR+GG+VYLFRGRNYN RTRPQYP+ML
Sbjct: 189  RRRVCKVRCRGVPTVDMDNVCQRLEEKTGGRIIHRVGGIVYLFRGRNYNYRTRPQYPLML 248

Query: 848  WKPAAPVYPKLIQDAPEGLSKVDADEFRRKGKKLLPICKLAKNGIYLNLVKDVRDAFEGS 669
            WKPAAPVYPKLIQ+APEGL+K +AD  R++GK LLPICKLAKNGIYL LVKDVR+AFEGS
Sbjct: 249  WKPAAPVYPKLIQEAPEGLTKAEADNLRKRGKNLLPICKLAKNGIYLTLVKDVRNAFEGS 308

Query: 668  PLVKVNCQGMHTSDYKKIGAKLKELVPCVLLSFDEEQILMWRGNNWKPRYLAP-IPSVTK 492
            PLVK++C+GMH SDYKK+GAKLK+LVPCVLLSFD+EQILMWRG +WK  Y  P +P   K
Sbjct: 309  PLVKIDCRGMHASDYKKLGAKLKDLVPCVLLSFDDEQILMWRGKDWKSMYPEPTVPLAEK 368

Query: 491  LKINDAGTSSDMKDSSNGISEECPTKQEVTRPKMFLLWKRALDSHKALLLDDNTELSPDS 312
             + +DA    D+              + ++ PKM  LW+RA+ + KALLL+D   LSPD 
Sbjct: 369  GETDDACKVRDV-------------NKVISSPKMTSLWERAIQTSKALLLND-LNLSPDD 414

Query: 311  LLERVEEFQSMSQASEHSYPALIMSSSEGA-------DNAERSSNED---DGDKFNDMDR 162
            LL+RVEEF+ ++QA+EHSYPAL++SS           ++   S +ED   DG  F D D 
Sbjct: 415  LLKRVEEFEGITQATEHSYPALVLSSERATGSSVAAYEDGSTSQSEDYGEDGFPFGDSDE 474

Query: 161  SSEDFEDYDIDVTDSFEDVDPSVPYGSLPVDSLAERLSTD 42
              +  ED      D FE+ D S P GSLPVD L E+LS D
Sbjct: 475  YDDFCED------DPFEEADWSAPLGSLPVDRLTEKLSQD 508


>ref|XP_012085424.1| PREDICTED: CRS2-associated factor 2, chloroplastic [Jatropha curcas]
            gi|643713951|gb|KDP26616.1| hypothetical protein
            JCGZ_17774 [Jatropha curcas]
          Length = 558

 Score =  594 bits (1531), Expect = e-167
 Identities = 299/516 (57%), Positives = 375/516 (72%), Gaps = 8/516 (1%)
 Frame = -3

Query: 1565 HNRTNYYKPLPKSPGAVVSGDGDRAVVVGSSGISYLLPNAPFEFQFSYSETPKAPPLAIR 1386
            H RT YYKP+      VVS DGDR+VV+G +GISY LP APFEFQ+SYSETPK  PLAIR
Sbjct: 63   HRRTKYYKPVKDG---VVSSDGDRSVVIGENGISYQLPGAPFEFQYSYSETPKVKPLAIR 119

Query: 1385 EPAFLPFAPPSMARPWTGKAPLVSXXXXXXXXKIXXXXXXXXXXXXXXXXXRIAGRKVDD 1206
            EPAFLPFAPP+M RPWTGKAPL           I                  +   +   
Sbjct: 120  EPAFLPFAPPTMPRPWTGKAPLKKSKKK-----IPLFDSFNPPPPDKKGVNFMEMPRPFP 174

Query: 1205 LGRCSAGDGRRKEEILGEPLMRREVRELVRPWLSKNRQVNLGRDGLTHNMLEMIHAHWKR 1026
            +G+    +G+ ++EILG+PL + E++ L++P  S NRQVNLGRDGLTHNML++IH+HW+R
Sbjct: 175  MGKFPE-EGKTRKEILGQPLKKWEIKMLIKPLASDNRQVNLGRDGLTHNMLDLIHSHWRR 233

Query: 1025 QEVCKVRCRGVPTVDMDNVCYHLEEKTGGKIIHRIGGVVYLFRGRNYNPRTRPQYPIMLW 846
            Q+VCKVRC+G+PTVDMDN+C+HLEEKTGGK+IHR+GGVVYLF GRNY+ RTRPQYP+M+W
Sbjct: 234  QQVCKVRCKGIPTVDMDNICHHLEEKTGGKVIHRVGGVVYLFCGRNYDYRTRPQYPVMIW 293

Query: 845  KPAAPVYPKLIQDAPEGLSKVDADEFRRKGKKLLPICKLAKNGIYLNLVKDVRDAFEGSP 666
            KPAAPVYPKLIQ+APEGL+K +ADEFR+KGK LLPICKLAKNG+Y+ LVKDVR+AFEGSP
Sbjct: 294  KPAAPVYPKLIQEAPEGLTKAEADEFRKKGKNLLPICKLAKNGVYITLVKDVRNAFEGSP 353

Query: 665  LVKVNCQGMHTSDYKKIGAKLKELVPCVLLSFDEEQILMWRGNNWKPRYLAPIPSVTKLK 486
            LVK++C+GM+ SDYKK+GAKLKELVPCVLLSFD+EQILMWRG NWKP Y    P    + 
Sbjct: 354  LVKIDCKGMNPSDYKKLGAKLKELVPCVLLSFDDEQILMWRGQNWKPMY----PEGRSVP 409

Query: 485  INDAGTSSDMKDSSNGISEECPTKQEVT---RPKMFLLWKRALDSHKALLLDDNTELSPD 315
              D  + S   D S    ++C      T    PKM  LWKRA+++  A+LLD+   L PD
Sbjct: 410  EVDIASDS---DDSGKFDDDCDNPDANTVRSSPKMMSLWKRAIEASNAILLDE-INLGPD 465

Query: 314  SLLERVEEFQSMSQASEHSYPALIMSSSEGADNA-----ERSSNEDDGDKFNDMDRSSED 150
             LL +VEEF+ +SQA+EHSYPA+I+S+ +GADN      + S  +   ++  DMD   ED
Sbjct: 466  DLLRKVEEFEGISQATEHSYPAVILSNEDGADNTISAFEDASLGKSFDEEGTDMDDEYED 525

Query: 149  FEDYDIDVTDSFEDVDPSVPYGSLPVDSLAERLSTD 42
             E YD   +DSF+++D SVP GSLPVD + ++L  +
Sbjct: 526  DEYYD---SDSFDELDASVPLGSLPVDRIVKKLDQE 558


>ref|XP_007227482.1| hypothetical protein PRUPE_ppa003604mg [Prunus persica]
            gi|462424418|gb|EMJ28681.1| hypothetical protein
            PRUPE_ppa003604mg [Prunus persica]
          Length = 562

 Score =  592 bits (1526), Expect = e-166
 Identities = 302/515 (58%), Positives = 377/515 (73%), Gaps = 6/515 (1%)
 Frame = -3

Query: 1568 VHNRTNYYKPLPKSPGAVVSGDGDRAVVVGSSGISYLLPNAPFEFQFSYSETPKAPPLAI 1389
            VH RT YYKP+      V+S DGDRAVV+G +G+SYLLP APFEFQ+SYSETPK  PLAI
Sbjct: 62   VHRRTKYYKPVRDG---VISSDGDRAVVIGENGVSYLLPGAPFEFQYSYSETPKVKPLAI 118

Query: 1388 REPAFLPFAPPSMARPWTGKAPLVSXXXXXXXXKIXXXXXXXXXXXXXXXXXRIAGRKVD 1209
            REPAFLPFAPP+M RPWTGKAPL S        K+                  +   +  
Sbjct: 119  REPAFLPFAPPTMPRPWTGKAPLKSAKEKKLKRKVPLLDSFGPMAPGTSGVKEVVMARPV 178

Query: 1208 DLGRCSAGDGRRKEEILGEPLMRREVRELVRPWLSKNRQVNLGRDGLTHNMLEMIHAHWK 1029
            +LG+    + + +EEILGEPL + E++ L++P LS NRQVNLGRDGLTHNML++IH+HWK
Sbjct: 179  ELGKYPKQE-KTREEILGEPLKKWEIKMLIQPQLSDNRQVNLGRDGLTHNMLDLIHSHWK 237

Query: 1028 RQEVCKVRCRGVPTVDMDNVCYHLEEKTGGKIIHRIGGVVYLFRGRNYNPRTRPQYPIML 849
            R+ VCKV+C+GVPTVDMDNVC H+EE+T GKIIHR+GGVVYLFRGRNY+ + RPQYP+ML
Sbjct: 238  RRPVCKVKCKGVPTVDMDNVCRHIEERTKGKIIHRVGGVVYLFRGRNYSYKDRPQYPLML 297

Query: 848  WKPAAPVYPKLIQDAPEGLSKVDADEFRRKGKKLLPICKLAKNGIYLNLVKDVRDAFEGS 669
            WKPAAPVYPKLIQ+APEGL+K  A+EFR+KGK+LLPICKLAKNG+Y+ LV+DVR AFEGS
Sbjct: 298  WKPAAPVYPKLIQEAPEGLTKDQAEEFRKKGKRLLPICKLAKNGVYITLVRDVRHAFEGS 357

Query: 668  PLVKVNCQGMHTSDYKKIGAKLKELVPCVLLSFDEEQILMWRGNNW-KPRYLAPIPSVTK 492
            PLVK++C+GMH SDYKK+GAKLKELVPCVLLSFD+E ILMWRG NW      AP PS   
Sbjct: 358  PLVKIDCRGMHASDYKKLGAKLKELVPCVLLSFDDEHILMWRGPNWISMHQAAPSPS--- 414

Query: 491  LKINDAGTSSDMKDSSNGISEECP----TKQEVTRPKMFLLWKRALDSHKALLLDDNTEL 324
                D      +  +  G   + P    TK  +T PKM  LWKR++DS+KALLLD+  +L
Sbjct: 415  ----DTADFDILSSTGRGKDYDKPCKPDTKTVMTSPKMMSLWKRSIDSNKALLLDE-LDL 469

Query: 323  SPDSLLERVEEFQSMSQASEHSYPALIMSSSEGADNAERSSNE-DDGDKFNDMDRSSEDF 147
             PD+LL++VEEF+ +SQA+EHSYPALI+SS +G  ++ +   E    D +++ D  S+++
Sbjct: 470  DPDALLKKVEEFEGVSQATEHSYPALIVSSEDGTSSSVQVFEEVPQSDPYSEYDDYSDNY 529

Query: 146  EDYDIDVTDSFEDVDPSVPYGSLPVDSLAERLSTD 42
             DY+ D  D+F D D S+P GSLPVD + E L  D
Sbjct: 530  -DYESDDDDAFYDSD-SIPLGSLPVDVIVEELDHD 562


>ref|XP_008221844.1| PREDICTED: CRS2-associated factor 2, chloroplastic [Prunus mume]
          Length = 562

 Score =  587 bits (1514), Expect = e-165
 Identities = 301/515 (58%), Positives = 374/515 (72%), Gaps = 6/515 (1%)
 Frame = -3

Query: 1568 VHNRTNYYKPLPKSPGAVVSGDGDRAVVVGSSGISYLLPNAPFEFQFSYSETPKAPPLAI 1389
            VH RT YYKP+      V+S DG RAVV+G +G+SYLLP APFEFQ+SYSETPK  PLAI
Sbjct: 62   VHRRTKYYKPVRDG---VISSDGARAVVIGENGVSYLLPGAPFEFQYSYSETPKVKPLAI 118

Query: 1388 REPAFLPFAPPSMARPWTGKAPLVSXXXXXXXXKIXXXXXXXXXXXXXXXXXRIAGRKVD 1209
            REPAFLPFAPP+M RPWTGKAPL S        K+                  +   +  
Sbjct: 119  REPAFLPFAPPTMPRPWTGKAPLKSAKEKKLKRKVPLLDSFGPMAPGTSGVKEVVMARPV 178

Query: 1208 DLGRCSAGDGRRKEEILGEPLMRREVRELVRPWLSKNRQVNLGRDGLTHNMLEMIHAHWK 1029
            +LG+    + + +EEILGEPL + E++ L++P LS NRQVNLGRDGLTHNML++IH+HWK
Sbjct: 179  ELGKYPKQE-KTREEILGEPLKKWEIKMLIQPQLSDNRQVNLGRDGLTHNMLDLIHSHWK 237

Query: 1028 RQEVCKVRCRGVPTVDMDNVCYHLEEKTGGKIIHRIGGVVYLFRGRNYNPRTRPQYPIML 849
            R+ VCKV+C+GVPTVDMDNVC H+EE+T GKIIHR+GGVVYLFRGRNY+ + RPQYP+ML
Sbjct: 238  RRPVCKVKCKGVPTVDMDNVCRHIEERTKGKIIHRVGGVVYLFRGRNYSYKDRPQYPLML 297

Query: 848  WKPAAPVYPKLIQDAPEGLSKVDADEFRRKGKKLLPICKLAKNGIYLNLVKDVRDAFEGS 669
            WKPAAPVYPKLIQ+APEGL+K  ADEFR+KGK+LLPICKLAKNG+Y+ LV+DVR AFEGS
Sbjct: 298  WKPAAPVYPKLIQEAPEGLTKDQADEFRKKGKRLLPICKLAKNGVYITLVRDVRHAFEGS 357

Query: 668  PLVKVNCQGMHTSDYKKIGAKLKELVPCVLLSFDEEQILMWRGNNW-KPRYLAPIPSVTK 492
            PLVK++C+GMH SDYKK+GAKLKELVPCVLLSFD E ILMWRG NW      AP PS   
Sbjct: 358  PLVKIDCRGMHASDYKKLGAKLKELVPCVLLSFDGEHILMWRGPNWISMHQAAPSPS--- 414

Query: 491  LKINDAGTSSDMKDSSNGISEECP----TKQEVTRPKMFLLWKRALDSHKALLLDDNTEL 324
                D      +  +  G   + P    TK  +T PKM  LWKR++DS+KALLLD+  +L
Sbjct: 415  ----DTADFDILSSTGRGKDYDKPCKPDTKTVMTSPKMMSLWKRSIDSNKALLLDE-LDL 469

Query: 323  SPDSLLERVEEFQSMSQASEHSYPALIMSSSEGADNAERSSNE-DDGDKFNDMDRSSEDF 147
             PD+LL++VEEF+ +SQ +EHSYPALI+SS +G  ++ +   E    D +++ D  S+++
Sbjct: 470  DPDALLKKVEEFEGVSQTTEHSYPALIVSSEDGTSSSVQVFEEIPQSDPYSEYDDYSDNY 529

Query: 146  EDYDIDVTDSFEDVDPSVPYGSLPVDSLAERLSTD 42
             DY+ D  D+F D D S+P GSLPVD + E L  D
Sbjct: 530  -DYESDDDDAFYDSD-SIPLGSLPVDVIVEELDHD 562


>ref|XP_007044701.1| RNA-binding CRS1 / YhbY (CRM) domain-containing protein [Theobroma
            cacao] gi|508708636|gb|EOY00533.1| RNA-binding CRS1 /
            YhbY (CRM) domain-containing protein [Theobroma cacao]
          Length = 562

 Score =  587 bits (1512), Expect = e-164
 Identities = 303/515 (58%), Positives = 373/515 (72%), Gaps = 10/515 (1%)
 Frame = -3

Query: 1565 HNRTNYYKPLPKSPGAVVSGDGDRAVVVGSSGISYLLPNAPFEFQFSYSETPKAPPLAIR 1386
            H R+NY KP+ K    V+S DGDR VV+G +G+SY LP APFEFQFSYSETPKA P+AIR
Sbjct: 64   HRRSNYRKPVKKG---VISSDGDRCVVIGENGVSYQLPGAPFEFQFSYSETPKAEPIAIR 120

Query: 1385 EPAFLPFAPPSMARPWTGKAPLVSXXXXXXXXKIXXXXXXXXXXXXXXXXXRIAGRKVDD 1206
            EPAFLPFAPP+M RPWTGKAPL+                                + V+ 
Sbjct: 121  EPAFLPFAPPTMPRPWTGKAPLIKSKKKIPLFDSFNPPPPDKKGV----------KYVEM 170

Query: 1205 LGRCSAG----DGRRKEEILGEPLMRREVRELVRPWLSKNRQVNLGRDGLTHNMLEMIHA 1038
             G    G    +G+ +EEILGEPL + E++ LV+P LS NRQVNLGRDGLTHNML++IH 
Sbjct: 171  PGPFPYGKYPKEGKTREEILGEPLKKWEIKMLVKPLLSDNRQVNLGRDGLTHNMLDLIHT 230

Query: 1037 HWKRQEVCKVRCRGVPTVDMDNVCYHLEEKTGGKIIHRIGGVVYLFRGRNYNPRTRPQYP 858
            HWKR+ VCK++C+GVPTVDMDNVC H+EEKTGGKIIHR+GGVVYLFRGRNYN RTRPQYP
Sbjct: 231  HWKRRRVCKIKCKGVPTVDMDNVCRHIEEKTGGKIIHRVGGVVYLFRGRNYNYRTRPQYP 290

Query: 857  IMLWKPAAPVYPKLIQDAPEGLSKVDADEFRRKGKKLLPICKLAKNGIYLNLVKDVRDAF 678
            +MLWKPAAPVYPKLIQ+APEGL+K + D  R+KGK LLPICKLAKNG+Y +LVKDVRDAF
Sbjct: 291  VMLWKPAAPVYPKLIQEAPEGLTKAETDVLRKKGKSLLPICKLAKNGVYASLVKDVRDAF 350

Query: 677  EGSPLVKVNCQGMHTSDYKKIGAKLKELVPCVLLSFDEEQILMWRGNNWKPRYLAPIPSV 498
            EGSPLVK++C+GMH SDYKKIGAKLKEL PCVLLSFD+EQILMWRG +WK  Y    PS 
Sbjct: 351  EGSPLVKIDCKGMHASDYKKIGAKLKELAPCVLLSFDDEQILMWRGQDWKSMY-PEAPST 409

Query: 497  TKLKINDAGTSSDMKDSSNGISEECPT---KQEVTRPKMFLLWKRALDSHKALLLDDNTE 327
              L  + +G SS + DS+   +++C T   K  ++ PKM  LW  A++S+KALLLD+   
Sbjct: 410  --LLPSKSGISSGLDDSAKS-ADDCHTPDIKNGISSPKMMTLWNNAIESNKALLLDE-IA 465

Query: 326  LSPDSLLERVEEFQSMSQASEHSYPALIMSSSEGADNAERSSNEDDGDKFNDMDRSSEDF 147
            L PD+LLE+VEEF+ +S  +EHS  AL++SS +G+ ++   S  + G    D    +E +
Sbjct: 466  LGPDALLEKVEEFEGISLVTEHSCEALVLSSEDGSGSSMAES--EAGSYSEDFGGENEIY 523

Query: 146  EDYDIDVTDSF---EDVDPSVPYGSLPVDSLAERL 51
             D DI + D +   E+VD S+P GSLPVD +AERL
Sbjct: 524  SDDDI-INDEYYDVEEVDSSIPLGSLPVDKIAERL 557


>ref|XP_010100435.1| CRS2-associated factor 2 [Morus notabilis]
            gi|587894037|gb|EXB82569.1| CRS2-associated factor 2
            [Morus notabilis]
          Length = 571

 Score =  585 bits (1508), Expect = e-164
 Identities = 305/512 (59%), Positives = 371/512 (72%), Gaps = 3/512 (0%)
 Frame = -3

Query: 1568 VHNRTNYYKPLPKSPGAVVSGDGDRAVVVGSSGISYLLPNAPFEFQFSYSETPKAPPLAI 1389
            VH R+NYYKP+    G + S DG R+VV+G SG+SYLLP APFEFQ+SYSETPK  PLAI
Sbjct: 73   VHRRSNYYKPV--RDGVIASDDG-RSVVIGDSGVSYLLPGAPFEFQYSYSETPKVKPLAI 129

Query: 1388 REPAFLPFAPPSMARPWTGKAPLVSXXXXXXXXKIXXXXXXXXXXXXXXXXXRIAGRKVD 1209
            REPAFLPFAPP+M RPWTGKAPL S        KI                 ++      
Sbjct: 130  REPAFLPFAPPTMPRPWTGKAPLKSAKEKKRNRKIPLLDSFNPPPRGTEGVKQMEMPGPF 189

Query: 1208 DLGRCSAGDGRRKEEILGEPLMRREVRELVRPWLSKNRQVNLGRDGLTHNMLEMIHAHWK 1029
              G+      + KEEILGEPL + E++ L++P LS NRQVNLGRDGLTHNMLE+IH+HWK
Sbjct: 190  PFGKYPKVR-KTKEEILGEPLKKWEIKMLIKPHLSSNRQVNLGRDGLTHNMLELIHSHWK 248

Query: 1028 RQEVCKVRCRGVPTVDMDNVCYHLEEKTGGKIIHRIGGVVYLFRGRNYNPRTRPQYPIML 849
            R  VCK+RC+GVPTVDMDNVC H+E KTGGKII+R GG VYLFRGRNYN   RPQYP+ML
Sbjct: 249  RTPVCKIRCKGVPTVDMDNVCQHIENKTGGKIINRAGGAVYLFRGRNYNYANRPQYPVML 308

Query: 848  WKPAAPVYPKLIQDAPEGLSKVDADEFRRKGKKLLPICKLAKNGIYLNLVKDVRDAFEGS 669
            WKPAAPVYPKLIQ+AP GL+K +A+E R KGKKLLPICKLAKNG+Y++LVKDVR AFEGS
Sbjct: 309  WKPAAPVYPKLIQEAPGGLTKDEANELRMKGKKLLPICKLAKNGVYISLVKDVRHAFEGS 368

Query: 668  PLVKVNCQGMHTSDYKKIGAKLKELVPCVLLSFDEEQILMWRGNNWKPRYL-APIPSVTK 492
            PLVK++C+GMH SDYKK+GAKLKELVPCVLLSFD+EQILMWRG++WK  Y    IPS+  
Sbjct: 369  PLVKIDCKGMHASDYKKLGAKLKELVPCVLLSFDDEQILMWRGSDWKSMYRDVSIPSILG 428

Query: 491  LKINDAGTSSDMKDSSNGISEECPTKQEV-TRPKMFLLWKRALDSHKALLLDDNTELSPD 315
               ND  TS   +   +      P  Q V T PKM  LWKRAL+S+KA+LLD+   L PD
Sbjct: 429  ---NDVVTSDLHRSGKDNDDSGDPDTQTVRTSPKMLSLWKRALESNKAILLDE-INLGPD 484

Query: 314  SLLERVEEFQSMSQASEHSYPALIMSSSEGADNAERSSNEDDGDKFNDMDRSSEDF-EDY 138
            +LL +VEEF+ +SQA+EHSYPALI+S  +G      SS+ ++ +  +  D  ++DF +DY
Sbjct: 485  ALLMKVEEFEGISQATEHSYPALIVSGEDGT-----SSSMEESEYLSQSDDDNDDFIDDY 539

Query: 137  DIDVTDSFEDVDPSVPYGSLPVDSLAERLSTD 42
            D +  D + D D S+P GSLPVD +A++ S D
Sbjct: 540  DEENDDVYYDSDSSLPLGSLPVDVIAKKFSQD 571


>ref|XP_008389676.1| PREDICTED: CRS2-associated factor 2, chloroplastic [Malus domestica]
          Length = 560

 Score =  585 bits (1507), Expect = e-164
 Identities = 297/514 (57%), Positives = 376/514 (73%), Gaps = 5/514 (0%)
 Frame = -3

Query: 1568 VHNRTNYYKPLPKSPGAVVSGDGDRAVVVGSSGISYLLPNAPFEFQFSYSETPKAPPLAI 1389
            +H RT YYKP+ +    V+  DGDRAVV+G +G+SY LP APFEFQ+SYSETPK  PLAI
Sbjct: 63   LHRRTKYYKPVREG---VIPADGDRAVVIGENGVSYQLPGAPFEFQYSYSETPKVKPLAI 119

Query: 1388 REPAFLPFAPPSMARPWTGKAPLVSXXXXXXXXKIXXXXXXXXXXXXXXXXXRIAGRKVD 1209
            REPAFLPFAPP+M RPWTGKAPL S        K+                  +A  +  
Sbjct: 120  REPAFLPFAPPTMPRPWTGKAPLKSAKEKKMKRKVPLWDSVGPVVAGTGGVKEMA--RPI 177

Query: 1208 DLGRCSAGDGRRKEEILGEPLMRREVRELVRPWLSKNRQVNLGRDGLTHNMLEMIHAHWK 1029
            +LG+      + +EEILG+PL + E++ L++P LS NRQVNLGRDGLTHNML++IH+HWK
Sbjct: 178  ELGKYPK-QQKSREEILGDPLKKWEIKMLIKPQLSDNRQVNLGRDGLTHNMLDLIHSHWK 236

Query: 1028 RQEVCKVRCRGVPTVDMDNVCYHLEEKTGGKIIHRIGGVVYLFRGRNYNPRTRPQYPIML 849
            R+ VCKV+C+GVPTVDMDNVC+H+EE+TGGKIIHR+GGVVYLFRGRNY+   RPQYP+ML
Sbjct: 237  RRPVCKVKCKGVPTVDMDNVCHHIEERTGGKIIHRVGGVVYLFRGRNYSYTNRPQYPLML 296

Query: 848  WKPAAPVYPKLIQDAPEGLSKVDADEFRRKGKKLLPICKLAKNGIYLNLVKDVRDAFEGS 669
            WKPAAPVYPKLIQ+APEGL+K +AD FR+KGK+LLPICKLAKNG+Y+ LV+DVR AFEGS
Sbjct: 297  WKPAAPVYPKLIQEAPEGLTKDEADMFRKKGKRLLPICKLAKNGVYITLVRDVRHAFEGS 356

Query: 668  PLVKVNCQGMHTSDYKKIGAKLKELVPCVLLSFDEEQILMWRGNNW-KPRYLAPIPSVTK 492
            PLVK++C GMH SDYKK+GAKLKELVPCVLLSFD+EQILMWRG+NW      AP PS   
Sbjct: 357  PLVKIDCTGMHASDYKKLGAKLKELVPCVLLSFDDEQILMWRGSNWISMHQSAPSPS--- 413

Query: 491  LKINDAGTSSDMKDSSNGISEECPTKQE----VTRPKMFLLWKRALDSHKALLLDDNTEL 324
                +      +  +  G  ++ P K +    +T PKM  LWKR++DS+KALLLD+   L
Sbjct: 414  ----EPDDFDILLSTGRGKEDDKPCKPDAKTVITSPKMMSLWKRSIDSNKALLLDE-LGL 468

Query: 323  SPDSLLERVEEFQSMSQASEHSYPALIMSSSEGADNAERSSNEDDGDKFNDMDRSSEDFE 144
             PD+LL++VEEF S+SQA+EHSYPALI+SS +G+ ++ +   ED  D +++ D   ++  
Sbjct: 469  DPDALLKKVEEFDSVSQATEHSYPALIVSSEDGSGSSVQVFEEDQXDPYSEYDDYIDN-- 526

Query: 143  DYDIDVTDSFEDVDPSVPYGSLPVDSLAERLSTD 42
            DYD +  D       S+P GSLPVD +A++L  D
Sbjct: 527  DYDNESDDDEFYESDSIPMGSLPVDVIADKLDHD 560


>ref|XP_002525395.1| conserved hypothetical protein [Ricinus communis]
            gi|223535358|gb|EEF37033.1| conserved hypothetical
            protein [Ricinus communis]
          Length = 561

 Score =  583 bits (1503), Expect = e-163
 Identities = 301/517 (58%), Positives = 376/517 (72%), Gaps = 12/517 (2%)
 Frame = -3

Query: 1565 HNRTNYYKPLPKSPGAVVSGDGDRAVVVGSSGISYLLPNAPFEFQFSYSETPKAPPLAIR 1386
            H RT YYKP+ +    V+S DGDR+VVVG +G+SY LP APFEFQFSYSETPK  PLAIR
Sbjct: 61   HRRTKYYKPIKQD--GVISSDGDRSVVVGENGVSYKLPGAPFEFQFSYSETPKVKPLAIR 118

Query: 1385 EPAFLPFAPPSMARPWTGKAPLVSXXXXXXXXKIXXXXXXXXXXXXXXXXXRIAGRKVDD 1206
            EPAFLPF PP+M RPWTGKAPL                                G K  +
Sbjct: 119  EPAFLPFGPPTMPRPWTGKAPLKKSKKKKIPLFSNSIPNDAKE-----------GVKYFE 167

Query: 1205 L-GRCSAG----DGRRKEEILGEPLMRREVRELVRPWLSKNRQVNLGRDGLTHNMLEMIH 1041
            + G    G    + + + EILG+PL R E+++LV+P LS NRQVNLGRDGLTHNMLE+IH
Sbjct: 168  MPGDLQFGKFPEEVKSRREILGKPLTRWEIKQLVKPLLSDNRQVNLGRDGLTHNMLELIH 227

Query: 1040 AHWKRQEVCKVRCRGVPTVDMDNVCYHLEEKTGGKIIHRIGGVVYLFRGRNYNPRTRPQY 861
            +HW+R  VCKVRC+G+PTVDM+N+C HLEE+TGGKII+RIGGVVYLF GRNY+ R+R +Y
Sbjct: 228  SHWRRSPVCKVRCKGIPTVDMNNICRHLEERTGGKIIYRIGGVVYLFCGRNYDYRSRVRY 287

Query: 860  PIMLWKPAAPVYPKLIQDAPEGLSKVDADEFRRKGKKLLPICKLAKNGIYLNLVKDVRDA 681
            P+MLWKPAAPVYPKLIQDAPEGL+K +ADEFR KGK LLPICKLAKNG+Y+ LV+DVR+A
Sbjct: 288  PVMLWKPAAPVYPKLIQDAPEGLTKAEADEFREKGKNLLPICKLAKNGVYITLVRDVRNA 347

Query: 680  FEGSPLVKVNCQGMHTSDYKKIGAKLKELVPCVLLSFDEEQILMWRGNNWKPRYLAPIPS 501
            FEGSPLVK++C+GM+ SDYKK+GAKLKELVPCVLLSFD+E ILMWRG NWKP Y   +PS
Sbjct: 348  FEGSPLVKIDCKGMNPSDYKKLGAKLKELVPCVLLSFDDEHILMWRGQNWKPMY-PEVPS 406

Query: 500  VTKLKINDAGTSSDMKDSSNGISEECPTKQEV----TRPKMFLLWKRALDSHKALLLDDN 333
            V+     D  + SD     +G  E+ P+ ++     + PKM  LW+ A++S KA+LL D 
Sbjct: 407  VSTPDAADFTSGSD----DSGKFEDDPSNRDANVVRSSPKMMSLWECAIESSKAILL-DQ 461

Query: 332  TELSPDSLLERVEEFQSMSQASEHSYPALIMSSSEGADNAERSSNEDD-GDKFNDMD--R 162
             +L PD LL +VEEF+ +SQA+EHSYPA+I+SS +GA+N   +  +D     F + D   
Sbjct: 462  IDLGPDDLLRKVEEFECISQATEHSYPAVILSSEDGANNTVAAFGDDSLSGSFTEEDDTY 521

Query: 161  SSEDFEDYDIDVTDSFEDVDPSVPYGSLPVDSLAERL 51
            + +++ED +   +DSFE+VD +VP GSLPVD LAERL
Sbjct: 522  TDDEYEDDEYYDSDSFEEVDTAVPLGSLPVDRLAERL 558


>ref|XP_008446191.1| PREDICTED: CRS2-associated factor 2, chloroplastic [Cucumis melo]
          Length = 611

 Score =  583 bits (1502), Expect = e-163
 Identities = 305/514 (59%), Positives = 377/514 (73%), Gaps = 6/514 (1%)
 Frame = -3

Query: 1565 HNRTNYYKPLPKSPGAVVSGDGDRAVVVGSSGISYLLPNAPFEFQFSYSETPKAPPLAIR 1386
            H R+ YYKP+      V+S +G+RAVV+G SG+SYLLP APFEFQ+SYSETP   P+AIR
Sbjct: 120  HRRSKYYKPVKDG---VISSNGERAVVIGDSGVSYLLPGAPFEFQYSYSETPNVKPIAIR 176

Query: 1385 EPAFLPFAPPSMARPWTGKAPLVSXXXXXXXXKIXXXXXXXXXXXXXXXXXRIAGRKVDD 1206
            EPAFLPFAPP+M RPWTGKAPL S         I                 ++       
Sbjct: 177  EPAFLPFAPPTMPRPWTGKAPLKSSKKK-----IPLFDSFNPPPPGTKGVKQVQLPGPFP 231

Query: 1205 LGRCSAGDGRRKEEILGEPLMRREVRELVRPWLSKNRQVNLGRDGLTHNMLEMIHAHWKR 1026
            LG+    +G+ +EEILGEPL   E+R LV+P LS NRQVNLGRDGLTHNMLE+IH+HWKR
Sbjct: 232  LGQYPK-EGKSREEILGEPLKNWEIRMLVKPHLSHNRQVNLGRDGLTHNMLELIHSHWKR 290

Query: 1025 QEVCKVRCRGVPTVDMDNVCYHLEEKTGGKIIHRIGGVVYLFRGRNYNPRTRPQYPIMLW 846
            Q VCKVRC+GVPTVDMDN+C+H+EEKTGGKIIHR+GGV+YLFRGRNYN RTRPQYP+MLW
Sbjct: 291  QRVCKVRCKGVPTVDMDNICHHIEEKTGGKIIHRVGGVLYLFRGRNYNYRTRPQYPVMLW 350

Query: 845  KPAAPVYPKLIQDAPEGLSKVDADEFRRKGKKLLPICKLAKNGIYLNLVKDVRDAFEGSP 666
            KPAAPVYPKLIQ+APEGL+K +A+E R KGK LLPICKLAKNG+Y++LV DVR AFEGS 
Sbjct: 351  KPAAPVYPKLIQEAPEGLTKEEANELRMKGKNLLPICKLAKNGVYISLVDDVRHAFEGSI 410

Query: 665  LVKVNCQGMHTSDYKKIGAKLKELVPCVLLSFDEEQILMWRGNNWK----PRYLAPIPSV 498
            LVK++C GMH SDYKK+GAKLKELVPCVLLSFD EQILMWRG +WK        AP+PS 
Sbjct: 411  LVKIDCTGMHESDYKKLGAKLKELVPCVLLSFDNEQILMWRGKDWKSVISDDRSAPLPS- 469

Query: 497  TKLKINDA-GTSSDMKDSSNGISEECPTKQEVTRPKMFLLWKRALDSHKALLLDDNTELS 321
             +   ND+ G+S +  ++S+ ++    T +  T PKM LLW+RA+DS+KAL+LD+   L+
Sbjct: 470  -RASSNDSLGSSGESVENSDLLNGNHHTIK--TSPKMKLLWERAIDSNKALMLDE-IGLA 525

Query: 320  PDSLLERVEEFQSMSQASEHSYPALIMSSSEGADNAERSSNEDDGD-KFNDMDRSSEDFE 144
            PD LLERVEEF+ +SQA+EHSYPA I SS E +  A+   ++D  +  +N  D    +  
Sbjct: 526  PDELLERVEEFERISQATEHSYPAFITSSEEVSSPADSPESQDHSEANYNSDDDVGRE-- 583

Query: 143  DYDIDVTDSFEDVDPSVPYGSLPVDSLAERLSTD 42
                   D F++VDP VP GSLPVD +A++LS++
Sbjct: 584  ------EDLFDNVDPLVPLGSLPVDIIAKKLSSE 611


>gb|ADN33825.1| RNA splicing factor [Cucumis melo subsp. melo]
          Length = 603

 Score =  583 bits (1502), Expect = e-163
 Identities = 305/514 (59%), Positives = 377/514 (73%), Gaps = 6/514 (1%)
 Frame = -3

Query: 1565 HNRTNYYKPLPKSPGAVVSGDGDRAVVVGSSGISYLLPNAPFEFQFSYSETPKAPPLAIR 1386
            H R+ YYKP+      V+S +G+RAVV+G SG+SYLLP APFEFQ+SYSETP   P+AIR
Sbjct: 112  HRRSKYYKPVKDG---VISSNGERAVVIGDSGVSYLLPGAPFEFQYSYSETPNVKPIAIR 168

Query: 1385 EPAFLPFAPPSMARPWTGKAPLVSXXXXXXXXKIXXXXXXXXXXXXXXXXXRIAGRKVDD 1206
            EPAFLPFAPP+M RPWTGKAPL S         I                 ++       
Sbjct: 169  EPAFLPFAPPTMPRPWTGKAPLKSSKKK-----IPLFDSFNPPPPGTKGVKQVQLPGPFP 223

Query: 1205 LGRCSAGDGRRKEEILGEPLMRREVRELVRPWLSKNRQVNLGRDGLTHNMLEMIHAHWKR 1026
            LG+    +G+ +EEILGEPL   E+R LV+P LS NRQVNLGRDGLTHNMLE+IH+HWKR
Sbjct: 224  LGQYPK-EGKSREEILGEPLKNWEIRMLVKPHLSHNRQVNLGRDGLTHNMLELIHSHWKR 282

Query: 1025 QEVCKVRCRGVPTVDMDNVCYHLEEKTGGKIIHRIGGVVYLFRGRNYNPRTRPQYPIMLW 846
            Q VCKVRC+GVPTVDMDN+C+H+EEKTGGKIIHR+GGV+YLFRGRNYN RTRPQYP+MLW
Sbjct: 283  QRVCKVRCKGVPTVDMDNICHHIEEKTGGKIIHRVGGVLYLFRGRNYNYRTRPQYPVMLW 342

Query: 845  KPAAPVYPKLIQDAPEGLSKVDADEFRRKGKKLLPICKLAKNGIYLNLVKDVRDAFEGSP 666
            KPAAPVYPKLIQ+APEGL+K +A+E R KGK LLPICKLAKNG+Y++LV DVR AFEGS 
Sbjct: 343  KPAAPVYPKLIQEAPEGLTKEEANELRMKGKNLLPICKLAKNGVYISLVDDVRHAFEGSI 402

Query: 665  LVKVNCQGMHTSDYKKIGAKLKELVPCVLLSFDEEQILMWRGNNWK----PRYLAPIPSV 498
            LVK++C GMH SDYKK+GAKLKELVPCVLLSFD EQILMWRG +WK        AP+PS 
Sbjct: 403  LVKIDCTGMHESDYKKLGAKLKELVPCVLLSFDNEQILMWRGKDWKSVISDDRSAPLPS- 461

Query: 497  TKLKINDA-GTSSDMKDSSNGISEECPTKQEVTRPKMFLLWKRALDSHKALLLDDNTELS 321
             +   ND+ G+S +  ++S+ ++    T +  T PKM LLW+RA+DS+KAL+LD+   L+
Sbjct: 462  -RASSNDSLGSSGESVENSDLLNGNHHTIK--TSPKMKLLWERAIDSNKALMLDE-IGLA 517

Query: 320  PDSLLERVEEFQSMSQASEHSYPALIMSSSEGADNAERSSNEDDGD-KFNDMDRSSEDFE 144
            PD LLERVEEF+ +SQA+EHSYPA I SS E +  A+   ++D  +  +N  D    +  
Sbjct: 518  PDELLERVEEFERISQATEHSYPAFITSSEEVSSPADSPESQDHSEANYNSDDDVGRE-- 575

Query: 143  DYDIDVTDSFEDVDPSVPYGSLPVDSLAERLSTD 42
                   D F++VDP VP GSLPVD +A++LS++
Sbjct: 576  ------EDLFDNVDPLVPLGSLPVDIIAKKLSSE 603


>ref|NP_001105669.1| CRS2-associated factor 2, chloroplastic precursor [Zea mays]
            gi|75147311|sp|Q84N48.1|CAF2P_MAIZE RecName:
            Full=CRS2-associated factor 2, chloroplastic; AltName:
            Full=Chloroplastic group IIA intron splicing facilitator
            CRS2-associated factor 2; Flags: Precursor
            gi|30349369|gb|AAP22136.1| CRS2-associated factor 2 [Zea
            mays] gi|414877310|tpg|DAA54441.1| TPA: crs2 associated
            factor2 [Zea mays]
          Length = 611

 Score =  581 bits (1498), Expect = e-163
 Identities = 302/536 (56%), Positives = 386/536 (72%), Gaps = 28/536 (5%)
 Frame = -3

Query: 1565 HNRTNYYKPLPKSPGAVVSGDGD-------------RAVVVGSSGISYLLPNAPFEFQFS 1425
            H RT Y KP+P    A  +G+G+             RAVVVG SG+S+ LP APF+FQFS
Sbjct: 81   HLRTAYRKPVPP---AAAAGEGEALLAADPTDAASGRAVVVGPSGLSFRLPGAPFDFQFS 137

Query: 1424 YSETPKAPPLAIREPAFLPFAPPSMARPWTGKAPLVSXXXXXXXXKIXXXXXXXXXXXXX 1245
            YSE P+APPLAIREPAFLPFAPP+M RPWTGKAPL++         +             
Sbjct: 138  YSEAPRAPPLAIREPAFLPFAPPTMPRPWTGKAPLLTKEEKARRRGVRLHTPLGQETPQT 197

Query: 1244 XXXXRIA----GRKVDDLGRCSAGDGRRKEEILGEPLMRREVRELVRPWLSKNRQVNLGR 1077
                 I      R+  DL R S GDGR +EE+LGEPL   EVR LV+P +S NRQ+N+GR
Sbjct: 198  VSAHGIMMEVRERRKMDLARVSPGDGRSREEVLGEPLTPSEVRALVKPHISHNRQLNIGR 257

Query: 1076 DGLTHNMLEMIHAHWKRQEVCKVRCRGVPTVDMDNVCYHLEEKTGGKIIHRIGGVVYLFR 897
            DGLTHNMLEMIH HW+RQE+CKVRCRGVPTVDM N+CYHLEEK+GGK+IHR+GGVV+L+R
Sbjct: 258  DGLTHNMLEMIHCHWRRQEICKVRCRGVPTVDMKNLCYHLEEKSGGKVIHRVGGVVFLYR 317

Query: 896  GRNYNPRTRPQYPIMLWKPAAPVYPKLIQDAPEGLSKVDADEFRRKGKKLLPICKLAKNG 717
            GR+Y+P+TRP+YP+MLWKPA PVYPKLI++AP+G +K +ADE RRKG+ LLPICKLAKNG
Sbjct: 318  GRHYDPKTRPRYPLMLWKPATPVYPKLIKEAPDGFTKEEADEMRRKGRDLLPICKLAKNG 377

Query: 716  IYLNLVKDVRDAFEGSPLVKVNCQGMHTSDYKKIGAKLKELVPCVLLSFDEEQILMWRGN 537
            IY+ LVKDVRDAFEGS LVK++C+G++ SDYKKIGAKL++LVPCVLLSFD+EQILM RG 
Sbjct: 378  IYITLVKDVRDAFEGSDLVKIDCEGLNPSDYKKIGAKLRDLVPCVLLSFDDEQILMHRGK 437

Query: 536  NWKPRYLAPIPSVTKLKINDAGTSSDMKDSSNGISEECP--TKQEVTRPKMFLLWKRALD 363
             WK RY  P+  + K+  N+   +S M +SS+ +S+       +EV RPKMF LWK A+D
Sbjct: 438  EWKSRYSKPLTLIPKVPKNNLAMTSVM-NSSDEVSDANTQVAIREVLRPKMFKLWKSAVD 496

Query: 362  SHKALLLDD--NTELSPDSLLERVEEFQSMSQASEHSYPALIMSSSEGAD---NAERSSN 198
            S  ALLLDD     L+PDSLL  VEEF   SQA EHS+PAL++++ + +    +AE  ++
Sbjct: 497  SSLALLLDDAEANNLTPDSLLTLVEEFSVTSQAVEHSFPALLVTNGDASTDSLSAEYMND 556

Query: 197  EDD----GDKFNDMDRSSEDFEDYDIDVTDSFEDVDPSVPYGSLPVDSLAERLSTD 42
            E +    G++   +++S +  +D   DV D FE ++ SVP GSLP+DS+ ERL+++
Sbjct: 557  EPETSVAGNEEGQLEQSPDLRDDEHFDV-DMFERLESSVPLGSLPIDSMIERLNSE 611


>ref|XP_012479367.1| PREDICTED: CRS2-associated factor 2, chloroplastic [Gossypium
            raimondii] gi|823159075|ref|XP_012479368.1| PREDICTED:
            CRS2-associated factor 2, chloroplastic [Gossypium
            raimondii] gi|823159077|ref|XP_012479369.1| PREDICTED:
            CRS2-associated factor 2, chloroplastic [Gossypium
            raimondii] gi|763763952|gb|KJB31206.1| hypothetical
            protein B456_005G181000 [Gossypium raimondii]
          Length = 563

 Score =  581 bits (1497), Expect = e-163
 Identities = 299/513 (58%), Positives = 371/513 (72%), Gaps = 8/513 (1%)
 Frame = -3

Query: 1565 HNRTNYYKPLPKSPGAVVSGDGDRAVVVGSSGISYLLPNAPFEFQFSYSETPKAPPLAIR 1386
            H R+NY KP+ K    V+S DGDR V+VG +G+SY LP APFEFQ+SYSETP A P+AIR
Sbjct: 64   HRRSNYRKPVQKG---VISTDGDRCVIVGENGVSYKLPGAPFEFQYSYSETPSAEPIAIR 120

Query: 1385 EPAFLPFAPPSMARPWTGKAPLVSXXXXXXXXKIXXXXXXXXXXXXXXXXXRIAGRKVDD 1206
            EPA+LPFAPP+M RPWTGKAPL                                 + V+ 
Sbjct: 121  EPAYLPFAPPTMPRPWTGKAPLKKSKKNIPLFDSFNPPPPGKKGV----------KHVEK 170

Query: 1205 LGRCSAG----DGRRKEEILGEPLMRREVRELVRPWLSKNRQVNLGRDGLTHNMLEMIHA 1038
             G    G    +G+ +EEILGEPL + E++ LV+P LS NRQVNLGRDGLTHNML++IH+
Sbjct: 171  PGPFPFGKYPKEGKTREEILGEPLKKWEIKMLVKPLLSYNRQVNLGRDGLTHNMLDLIHS 230

Query: 1037 HWKRQEVCKVRCRGVPTVDMDNVCYHLEEKTGGKIIHRIGGVVYLFRGRNYNPRTRPQYP 858
            HWKR+ VCK++C+GVPTVDMDNVC H+EEKTGGKIIHR+GGVVYLFRGRNYN RTRPQYP
Sbjct: 231  HWKRRRVCKIKCKGVPTVDMDNVCRHIEEKTGGKIIHRVGGVVYLFRGRNYNYRTRPQYP 290

Query: 857  IMLWKPAAPVYPKLIQDAPEGLSKVDADEFRRKGKKLLPICKLAKNGIYLNLVKDVRDAF 678
            +MLWKPA PVYPKLIQ+APEGL+K +ADEFR+KGK LLPIC LAKNG+Y +LVKDVRDAF
Sbjct: 291  VMLWKPATPVYPKLIQEAPEGLTKAEADEFRKKGKSLLPICTLAKNGVYASLVKDVRDAF 350

Query: 677  EGSPLVKVNCQGMHTSDYKKIGAKLKELVPCVLLSFDEEQILMWRGNNWKPRYLAPIPSV 498
            E  PLVK++C+G+  SDYKKIGAKLKELVPCVLLSFD+EQILMWRG +WK  Y     ++
Sbjct: 351  EECPLVKIDCKGLQPSDYKKIGAKLKELVPCVLLSFDDEQILMWRGRDWKSMYGDTSSTL 410

Query: 497  TKLKINDAGTSSDMKDSSNGISEECPTKQEVTRPKMFLLWKRALDSHKALLLDDNTELSP 318
              +K  D  +  D    S+  S     ++ V+ PKM  LW+RA++S+KALLL++   L P
Sbjct: 411  VPVKA-DISSGIDNSAKSSDDSGTPDAQRVVSSPKMISLWRRAIESNKALLLEE-LALGP 468

Query: 317  DSLLERVEEFQSMSQASEHSYPALIMSSSEGADNAERSSNEDDGDKF----NDMDRSSED 150
            D+LLE+VEEF+ MS A EHS  AL++SS +G+ ++  SS E  G  +    ND+  S + 
Sbjct: 469  DALLEKVEEFEGMSLAIEHSCEALVLSSEDGSSSS--SSAEFKGGSYSEDENDIYSSDDI 526

Query: 149  FEDYDIDVTDSFEDVDPSVPYGSLPVDSLAERL 51
             +D D D  DSF +V+PS+P GSLPVD +AERL
Sbjct: 527  IDDEDYD-DDSFAEVNPSIPLGSLPVDKIAERL 558


>ref|NP_001042896.1| Os01g0323300 [Oryza sativa Japonica Group]
            gi|75115027|sp|Q657G7.1|CAF2P_ORYSJ RecName:
            Full=CRS2-associated factor 2, chloroplastic; AltName:
            Full=Chloroplastic group IIA intron splicing facilitator
            CRS2-associated factor 2; Flags: Precursor
            gi|52075771|dbj|BAD44991.1| putative CRS2-associated
            factor 2 [Oryza sativa Japonica Group]
            gi|52076260|dbj|BAD45045.1| putative CRS2-associated
            factor 2 [Oryza sativa Japonica Group]
            gi|113532427|dbj|BAF04810.1| Os01g0323300 [Oryza sativa
            Japonica Group] gi|937895879|dbj|BAS71859.1| Os01g0323300
            [Oryza sativa Japonica Group]
          Length = 607

 Score =  580 bits (1495), Expect = e-162
 Identities = 294/534 (55%), Positives = 376/534 (70%), Gaps = 26/534 (4%)
 Frame = -3

Query: 1565 HNRTNYYKPLPKSPGAVVSGDGD-------------RAVVVGSSGISYLLPNAPFEFQFS 1425
            H RT Y KP+P    A   G+G+             RAVVVG SG+S+ LP APF+F+FS
Sbjct: 77   HLRTAYRKPVPPVAAA---GEGEALLAADASDAADGRAVVVGPSGLSFRLPGAPFDFRFS 133

Query: 1424 YSETPKAPPLAIREPAFLPFAPPSMARPWTGKAPLVSXXXXXXXXKIXXXXXXXXXXXXX 1245
            YSE P+APP+AIREPAFLPFAPP+M RPWTGKAPL++         +             
Sbjct: 134  YSECPRAPPVAIREPAFLPFAPPTMPRPWTGKAPLLTKEEKARRRGVRLHTPLGEEAPRT 193

Query: 1244 XXXXRIA----GRKVDDLGRCSAGDGRRKEEILGEPLMRREVRELVRPWLSKNRQVNLGR 1077
                 I     GR+  DL R S GDGR +EE+LGEPL   EVR+LV+P +S NRQ+N+GR
Sbjct: 194  VSAHGIMMEVRGRRKLDLARVSPGDGRSREEVLGEPLTAAEVRDLVKPHISHNRQLNIGR 253

Query: 1076 DGLTHNMLEMIHAHWKRQEVCKVRCRGVPTVDMDNVCYHLEEKTGGKIIHRIGGVVYLFR 897
            DGLTHNMLEMIH HW+RQE+CKVRCRGVPTVDM N+CYHLEEK+GGK+IHR+GGVV+L+R
Sbjct: 254  DGLTHNMLEMIHCHWRRQEICKVRCRGVPTVDMKNLCYHLEEKSGGKVIHRVGGVVFLYR 313

Query: 896  GRNYNPRTRPQYPIMLWKPAAPVYPKLIQDAPEGLSKVDADEFRRKGKKLLPICKLAKNG 717
            GRNYNPRTRP+YP+MLWKPA PVYPKLIQ+APEGL+K +ADE RR+GK LLPICKLAKNG
Sbjct: 314  GRNYNPRTRPRYPLMLWKPATPVYPKLIQEAPEGLTKEEADEMRRRGKDLLPICKLAKNG 373

Query: 716  IYLNLVKDVRDAFEGSPLVKVNCQGMHTSDYKKIGAKLKELVPCVLLSFDEEQILMWRGN 537
            IY+ LV+DVRDAFEGS LVK++C+G++ SDYKKIGAKL++LVPCVLLSFD EQILM+RG 
Sbjct: 374  IYIYLVRDVRDAFEGSDLVKIDCEGLNPSDYKKIGAKLRDLVPCVLLSFDNEQILMFRGK 433

Query: 536  NWKPRYLAPIPSVTKLKINDAGTSSDMKDSSNGISEECP-TKQEVTRPKMFLLWKRALDS 360
             WK RY  P+  + K++ N+   SSD   S     ++     +EV RPKMF LW  A++S
Sbjct: 434  EWKSRYPKPLTLIPKIRKNNVPMSSDESSSDEATDDDDRLAVREVLRPKMFELWTNAIES 493

Query: 359  HKALLLDDN--TELSPDSLLERVEEFQSMSQASEHSYPALIMSSSEGADNAERSSNEDDG 186
              AL+LDD     L+PDSLL RVE+F   SQ  EHS+PA+++++ E   +   +   +D 
Sbjct: 494  SVALMLDDAEVDALTPDSLLTRVEDFSVTSQVVEHSFPAVLVANDESNPDVLNAEYTEDE 553

Query: 185  DKFNDMDRSSEDF-EDYDIDVTDSFED-----VDPSVPYGSLPVDSLAERLSTD 42
             +   ++    +F E  D+   D FED     ++ SVP G+LP+D++ ++L+ +
Sbjct: 554  PETGTLEPQQHEFTESSDVAEDDHFEDDMLKRLESSVPLGALPIDAVVKQLNDE 607


>gb|EAY73777.1| hypothetical protein OsI_01650 [Oryza sativa Indica Group]
          Length = 609

 Score =  580 bits (1494), Expect = e-162
 Identities = 294/534 (55%), Positives = 377/534 (70%), Gaps = 26/534 (4%)
 Frame = -3

Query: 1565 HNRTNYYKPLPKSPGAVVSGDGD-------------RAVVVGSSGISYLLPNAPFEFQFS 1425
            H RT Y KP+P    A   G+G+             RAVVVG SG+S+ LP APF+F+FS
Sbjct: 79   HLRTAYRKPVPPVAAA---GEGEALLAADASDAADGRAVVVGPSGLSFRLPGAPFDFRFS 135

Query: 1424 YSETPKAPPLAIREPAFLPFAPPSMARPWTGKAPLVSXXXXXXXXKIXXXXXXXXXXXXX 1245
            YSE P+APP+AIREPAFLPFAPP+M RPWTGKAPL++         +             
Sbjct: 136  YSECPRAPPVAIREPAFLPFAPPTMPRPWTGKAPLLTKEEKARRRGVRLHTPLGEEAPRT 195

Query: 1244 XXXXRIA----GRKVDDLGRCSAGDGRRKEEILGEPLMRREVRELVRPWLSKNRQVNLGR 1077
                 I     GR+  DL R S GDGR +EE+LGEPL   EVR+LV+P +S NRQ+N+GR
Sbjct: 196  VSAHGIMMEVRGRRKLDLARVSPGDGRSREEVLGEPLTAAEVRDLVKPHISHNRQLNIGR 255

Query: 1076 DGLTHNMLEMIHAHWKRQEVCKVRCRGVPTVDMDNVCYHLEEKTGGKIIHRIGGVVYLFR 897
            DGLTHNMLEMIH HW+RQE+CKVRCRGVPTVDM N+CYHLEEK+GGK+IHR+GGVV+L+R
Sbjct: 256  DGLTHNMLEMIHCHWRRQEICKVRCRGVPTVDMKNLCYHLEEKSGGKVIHRVGGVVFLYR 315

Query: 896  GRNYNPRTRPQYPIMLWKPAAPVYPKLIQDAPEGLSKVDADEFRRKGKKLLPICKLAKNG 717
            GRNYNPRTRP+YP+MLWKPA PVYPKLIQ+APEGL+K +ADE RR+GK LLPICKLAKNG
Sbjct: 316  GRNYNPRTRPRYPLMLWKPATPVYPKLIQEAPEGLTKEEADEMRRRGKDLLPICKLAKNG 375

Query: 716  IYLNLVKDVRDAFEGSPLVKVNCQGMHTSDYKKIGAKLKELVPCVLLSFDEEQILMWRGN 537
            IY+ LV+DVRDAFEGS LVK++C+G++ SDYKKIGAKL++LVPCVLLSFD EQILM+RG 
Sbjct: 376  IYIYLVRDVRDAFEGSDLVKIDCEGLNPSDYKKIGAKLRDLVPCVLLSFDNEQILMFRGK 435

Query: 536  NWKPRYLAPIPSVTKLKINDAGTSSDMKDSSNGISEECP-TKQEVTRPKMFLLWKRALDS 360
             WK RY  P+  + K++ N+   SSD   S     ++     +EV RPKMF LW  A++S
Sbjct: 436  EWKSRYPKPLTLIPKIRKNNVPMSSDESSSDEATDDDDRLAVREVLRPKMFELWTNAIES 495

Query: 359  HKALLLDDN--TELSPDSLLERVEEFQSMSQASEHSYPALIMSSSEGADNAERSSNEDDG 186
              AL+LDD     L+PDSLL RVE+F   SQA EHS+PA+++++ E   +   +   +D 
Sbjct: 496  SVALMLDDAEVDALTPDSLLTRVEDFSVTSQAVEHSFPAVLVANDESNPDVLNAEYTEDE 555

Query: 185  DKFNDMDRSSEDF-EDYDIDVTDSFED-----VDPSVPYGSLPVDSLAERLSTD 42
             +   ++    +F E  D+   + FED     ++ SVP G+LP+D++ ++L+ +
Sbjct: 556  PETGTLEPQQHEFTESSDVAEDNHFEDDMLKRLESSVPLGALPIDAVVKQLNDE 609