BLASTX nr result
ID: Ophiopogon21_contig00003474
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Ophiopogon21_contig00003474
(1714 letters)
Database: ./nr
77,306,371 sequences; 28,104,191,420 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_008803255.1| PREDICTED: DNA-directed RNA polymerase IV su... 537 e-149
ref|XP_010919205.1| PREDICTED: DNA-directed RNA polymerase IV su... 513 e-142
ref|XP_009411452.1| PREDICTED: DNA-directed RNA polymerase IV su... 461 e-127
ref|XP_009411449.1| PREDICTED: DNA-directed RNA polymerase IV su... 461 e-127
ref|XP_010278507.1| PREDICTED: DNA-directed RNA polymerase IV su... 430 e-117
ref|XP_010278508.1| PREDICTED: DNA-directed RNA polymerase IV su... 424 e-115
ref|XP_008646771.1| PREDICTED: DNA dependent RNA polymerase D la... 420 e-114
gb|ACL30982.1| mutant DNA dependent RNA polymerase D largest sub... 420 e-114
ref|NP_001182824.1| DNA dependent RNA polymerase D largest subun... 420 e-114
gb|KQL07953.1| hypothetical protein SETIT_0000652mg, partial [Se... 415 e-113
ref|XP_006653694.1| PREDICTED: DNA-directed RNA polymerase IV su... 415 e-113
ref|XP_004970758.1| PREDICTED: DNA-directed RNA polymerase IV su... 415 e-113
ref|XP_012701776.1| PREDICTED: DNA-directed RNA polymerase IV su... 415 e-113
ref|XP_012701775.1| PREDICTED: DNA-directed RNA polymerase IV su... 415 e-113
ref|XP_004970757.1| PREDICTED: DNA-directed RNA polymerase IV su... 415 e-113
ref|XP_003566523.1| PREDICTED: DNA-directed RNA polymerase IV su... 412 e-112
ref|XP_006661522.1| PREDICTED: DNA-directed RNA polymerase IV su... 402 e-109
ref|XP_006358859.1| PREDICTED: DNA-directed RNA polymerase IV su... 390 e-105
ref|XP_006358858.1| PREDICTED: DNA-directed RNA polymerase IV su... 390 e-105
ref|XP_010325436.1| PREDICTED: DNA-directed RNA polymerase IV su... 384 e-103
>ref|XP_008803255.1| PREDICTED: DNA-directed RNA polymerase IV subunit 1 [Phoenix
dactylifera]
Length = 1567
Score = 537 bits (1384), Expect = e-149
Identities = 288/570 (50%), Positives = 371/570 (65%), Gaps = 44/570 (7%)
Frame = -3
Query: 1712 RTASLALSNKLKRLNYGFEYGALAVKNHLDRVFFSDIVTSVMIFYSAHDAKGTKGMRLSP 1533
++AS+ LS LK+ YGFEYGAL VKNHLDRV FSD+VT+V+IFY+ D +GTK SP
Sbjct: 1008 KSASIFLSKGLKKQRYGFEYGALEVKNHLDRVLFSDLVTTVLIFYAGLDVQGTK---FSP 1064
Query: 1532 WVLHFHVNKEMILRKRINVQSIVDALAGNYNCFRE--GRKLPRLFMTSQSCVLGNEQKNL 1359
W+ HFHV+KE ++RKR+ VQ+I+D L+ NYN RE G +LP L +TS+ C L + Q
Sbjct: 1065 WITHFHVSKERMMRKRLRVQTIIDQLSANYNFVRETVGTELPGLRITSKDCSLIDIQNEH 1124
Query: 1358 EELCISVGAVESSERKEQDEPSPTLLDTIRDSVMPVLLQTLIKGFKEFKQVDILWDSQPK 1179
+E + V++ E + Q LDTIRD ++P+LL+TL+KGF EFK+V+IL D QP
Sbjct: 1125 DETFCIMVLVDTPESEIQ-------LDTIRDVLVPLLLETLVKGFWEFKKVEILCDIQPD 1177
Query: 1178 PDGQLFLKIIMEESCPPRKFWRTLQSACLPIMDMIDWERSRPDGAHDISDVFGIISSYSY 999
+LFL++ M E C P KFW LQ+AC+PIMD+IDWE S P+ +DI ++GI +++ Y
Sbjct: 1178 SLDELFLRVSMSEKCLPGKFWSALQNACIPIMDLIDWEHSHPNSMYDIFSIYGIDAAWKY 1237
Query: 998 FLGSLKSAVSDIGRNIHLEHLLLVSDSLSVTGEFHGLSAKGIKQQRAHLSISSPFTQACF 819
FL LKSA SD GR IH EHLL+ +D LSVTGEFHGLS KG+K+QR SISSPFT AC
Sbjct: 1238 FLRHLKSATSDTGRCIHEEHLLMAADCLSVTGEFHGLSIKGLKKQRDQASISSPFTLACL 1297
Query: 818 CNPEKCFIEAAKHSSTDHLYGTVDAVAWGQEAPVGTGGPFKIIYSGKVHSPKQTENIYEI 639
NP FI AAK S DHL GT+DA+AWG+EAPVGTGGPF+IIYSGKVH+P++TENIY+
Sbjct: 1298 SNPGYGFINAAKQGSVDHLGGTLDAMAWGKEAPVGTGGPFEIIYSGKVHNPQKTENIYKT 1357
Query: 638 LLKQKHDSSSQIPG----------ADKWKGQPGVDNAGGS-------------------- 549
LL K + Q + KWK + + N G S
Sbjct: 1358 LLNFKVEKPWQDDNKLCRHGDRNVSTKWKHKRILSNTGASTGESIDQLISEEAHTRQGCP 1417
Query: 548 ----MRRWNEH--------NCTTKKEKNVVFSSQPASVRIGSWDNISAMSSSLSRMLHQY 405
+ +W + ++ + + FS++ A GSW NI M S+L +LH+Y
Sbjct: 1418 CEYPVNKWERQSKGHVVSSSVSSNSDAKMGFSTKSALRSAGSWANIVDMCSNLRTILHEY 1477
Query: 404 PVNHQLNEADKSLLMEALMYHPKKDAXXXXXXXXXXXGHSPFHPKSRCFILIRNDGTTED 225
P+N LNE DKS LMEAL YHPK+DA GHSP HP SRCF+L+RNDGTTED
Sbjct: 1478 PINGYLNETDKSCLMEALSYHPKRDAKMGTGIQGIKIGHSPLHPGSRCFVLVRNDGTTED 1537
Query: 224 FSYRKCVIEAANQISPEFGLLVEKELDPRQ 135
FSYRKC+I AA ISPEFG +VEK++ R+
Sbjct: 1538 FSYRKCIIGAAYSISPEFGSMVEKKMSWRR 1567
>ref|XP_010919205.1| PREDICTED: DNA-directed RNA polymerase IV subunit 1 [Elaeis
guineensis]
Length = 1569
Score = 513 bits (1320), Expect = e-142
Identities = 279/570 (48%), Positives = 363/570 (63%), Gaps = 48/570 (8%)
Frame = -3
Query: 1712 RTASLALSNKLKRLNYGFEYGALAVKNHLDRVFFSDIVTSVMIFYSAHDAKGTKGMRLSP 1533
++AS+ LS LK+ YGFEYGAL VKNHLDRV FSD+VT+++IFY+ D +GTK SP
Sbjct: 1008 KSASIFLSKGLKKQRYGFEYGALEVKNHLDRVLFSDLVTTILIFYAGLDVQGTK---FSP 1064
Query: 1532 WVLHFHVNKEMILRKRINVQSIVDALAGNYNCFRE--GRKLPRLFMTSQSCVLGNEQKNL 1359
W+ HFHV+KE ++RKR+ Q+I+D L+GNYN RE G +LP L ++S+ C L + Q
Sbjct: 1065 WITHFHVSKERMMRKRLRAQTIIDQLSGNYNFVRETVGTELPVLHISSKDCSLIDIQNEH 1124
Query: 1358 EE-LCISVGAVESSERKEQDEPSPTL-LDTIRDSVMPVLLQTLIKGFKEFKQVDILWDSQ 1185
+E C++V D P + LDTIRD ++P+LL+TLIKGF EFK+V+IL D Q
Sbjct: 1125 DETFCVTVLV---------DAPKSDIQLDTIRDVIIPLLLETLIKGFWEFKKVEILCDIQ 1175
Query: 1184 PKPDGQLFLKIIMEESCPPRKFWRTLQSACLPIMDMIDWERSRPDGAHDISDVFGIISSY 1005
LFL++ M E C P KFW LQ+AC+PIMD+IDWE+S P+ +DI ++GI +++
Sbjct: 1176 RDSLDGLFLRVTMSEKCLPGKFWSALQNACIPIMDLIDWEQSHPNSMYDIFSIYGIDAAW 1235
Query: 1004 SYFLGSLKSAVSDIGRNIHLEHLLLVSDSLSVTGEFHGLSAKGIKQQRAHLSISSPFTQA 825
YFL LKSA SDIGR +H EHLL+ +D LSVTGEFHGLS KG+K+QR SISSPFT A
Sbjct: 1236 KYFLKYLKSATSDIGRCMHEEHLLMAADCLSVTGEFHGLSTKGLKKQRDQASISSPFTLA 1295
Query: 824 CFCNPEKCFIEAAKHSSTDHLYGTVDAVAWGQEAPVGTGGPFKIIYSGKVHSPKQTENIY 645
C NP FI AAK S DHL GT+DA+AWG+EAP+GTGGPF+IIYSGKVH+ ++ ENIY
Sbjct: 1296 CLSNPGNGFINAAKQGSVDHLCGTLDAMAWGKEAPIGTGGPFEIIYSGKVHNSQKNENIY 1355
Query: 644 EILLKQKHDSSSQIPG----------ADKWKGQPGVDNAGGS------------------ 549
+ L+ K + Q + KWK + + NA S
Sbjct: 1356 KTLMNFKVEKPWQDDNKLCRHGDKNVSTKWKHKRILSNADASTGESIDQLISDEACMGQG 1415
Query: 548 ------MRRWNE----HNCTTKKEKN------VVFSSQPASVRIGSWDNISAMSSSLSRM 417
+ +W H ++ N + F + A GSW NI M S+L +
Sbjct: 1416 CPCENPVNKWERQSKGHLVSSNAGSNSDIKTTLGFRKRSALSSAGSWANIVDMCSNLRTI 1475
Query: 416 LHQYPVNHQLNEADKSLLMEALMYHPKKDAXXXXXXXXXXXGHSPFHPKSRCFILIRNDG 237
LH+YP+N LNE DKS LMEAL YHPK++A GHSP HP SRCF+L+RNDG
Sbjct: 1476 LHEYPINGYLNETDKSCLMEALSYHPKREAKMGTGVQGIKIGHSPLHPGSRCFVLVRNDG 1535
Query: 236 TTEDFSYRKCVIEAANQISPEFGLLVEKEL 147
TTEDFSYRKC+I AA IS E G ++EK++
Sbjct: 1536 TTEDFSYRKCIIGAAYNISRELGSVIEKKM 1565
>ref|XP_009411452.1| PREDICTED: DNA-directed RNA polymerase IV subunit 1 isoform X2 [Musa
acuminata subsp. malaccensis]
Length = 1562
Score = 461 bits (1186), Expect = e-127
Identities = 257/569 (45%), Positives = 341/569 (59%), Gaps = 48/569 (8%)
Frame = -3
Query: 1709 TASLALSNKLKRLNYGFEYGALAVKNHLDRVFFSDIVTSVMIFYSAHDAKGTKGMRLSPW 1530
TA L LS +L YG EYGAL VKNHL+RV F +++ +VMI Y HD +GT SPW
Sbjct: 1005 TALLFLSKRLHGWRYGCEYGALEVKNHLERVCFFNLIITVMILYDGHDVQGTN---FSPW 1061
Query: 1529 VLHFHVNKEMILRKRINVQSIVDALAGNYNCFREGRK--LPRLFMTSQSCVLGNEQKNLE 1356
++HFHV+K+ +LR+R+NVQ + + L +YNC RE LPRL S++C + K +
Sbjct: 1062 IMHFHVSKDKMLRRRLNVQLVKNELIKHYNCMRERMNPMLPRLCFVSKNCSSAYKWKEHD 1121
Query: 1355 E-LCISVGAVESSERKEQDEPSPTLLDTIRDSVMPVLLQTLIKGFKEFKQVDILWDSQPK 1179
+ C+SV A E+SE Q LDTIRD V+P+LL+T IKGF ++V+IL +S P
Sbjct: 1122 DSFCMSVAA-ETSESLIQ-------LDTIRDMVIPLLLETPIKGFWASEKVEILCESLPG 1173
Query: 1178 PDGQLFLKIIMEESCPPRKFWRTLQSACLPIMDMIDWERSRPDGAHDISDVFGIISSYSY 999
+LFL++ M + C P FW LQ AC+PIMD+IDW+ S PD ++IS +GI +++ Y
Sbjct: 1174 SGSELFLRVTMSKKCLPGSFWSDLQDACIPIMDLIDWQCSHPDNVYNISGTYGIDAAWKY 1233
Query: 998 FLGSLKSAVSDIGRNIHLEHLLLVSDSLSVTGEFHGLSAKGIKQQRAHLSISSPFTQACF 819
F+ SLKS +DIGR+IH HL + +D LSVTGEFHGLS KG++QQR +SISSPF QAC
Sbjct: 1234 FVKSLKSVTADIGRDIHKRHLFMAADCLSVTGEFHGLSTKGLRQQRNDMSISSPFAQACL 1293
Query: 818 CNPEKCFIEAAKHSSTDHLYGTVDAVAWGQEAPVGTGGPFKIIYSGKVHSPKQTENIYEI 639
NP CF+ AAK S DHL GT+DAVAWG+EAP GTGGPF+I+YSGKVH+ + E IY
Sbjct: 1294 SNPVNCFVNAAKQGSMDHLSGTLDAVAWGKEAPSGTGGPFEIVYSGKVHNLTRGEGIY-- 1351
Query: 638 LLKQKHDSSSQIPGAD-------------KWKGQP-------GVDNAGGSMRRWNEH--- 528
K H +++ D KWK QP G +H
Sbjct: 1352 --KNLHSIKAELQQGDGEVCMAANQTVPAKWKQQPKYSTNFDGAKETIDPQTSDEDHLKE 1409
Query: 527 --------NC--------------TTKKEKNVVFSSQPASVRIGSWDNISAMSSSLSRML 414
NC K S+ +S + SW ++ M SSL +L
Sbjct: 1410 RIVSKFRTNCKGYNKQQQISANDFLAKSHLTFGLRSKFSSESVSSWTDVVDMCSSLRTIL 1469
Query: 413 HQYPVNHQLNEADKSLLMEALMYHPKKDAXXXXXXXXXXXGHSPFHPKSRCFILIRNDGT 234
++YP++ L+E D S L+EAL YHPK+ A G SP HP SRCF+L+R+DG+
Sbjct: 1470 YKYPIDGFLDEKDNSSLIEALNYHPKRAAKIGSGIQKIKVGCSPLHPGSRCFVLLRSDGS 1529
Query: 233 TEDFSYRKCVIEAANQISPEFGLLVEKEL 147
EDFSYRKCV+ AA ISPEFG +V K++
Sbjct: 1530 LEDFSYRKCVVGAAKLISPEFGSIVHKKI 1558
>ref|XP_009411449.1| PREDICTED: DNA-directed RNA polymerase IV subunit 1 isoform X1 [Musa
acuminata subsp. malaccensis]
gi|695047161|ref|XP_009411450.1| PREDICTED: DNA-directed
RNA polymerase IV subunit 1 isoform X1 [Musa acuminata
subsp. malaccensis] gi|695047163|ref|XP_009411451.1|
PREDICTED: DNA-directed RNA polymerase IV subunit 1
isoform X1 [Musa acuminata subsp. malaccensis]
Length = 1569
Score = 461 bits (1186), Expect = e-127
Identities = 257/569 (45%), Positives = 341/569 (59%), Gaps = 48/569 (8%)
Frame = -3
Query: 1709 TASLALSNKLKRLNYGFEYGALAVKNHLDRVFFSDIVTSVMIFYSAHDAKGTKGMRLSPW 1530
TA L LS +L YG EYGAL VKNHL+RV F +++ +VMI Y HD +GT SPW
Sbjct: 1012 TALLFLSKRLHGWRYGCEYGALEVKNHLERVCFFNLIITVMILYDGHDVQGTN---FSPW 1068
Query: 1529 VLHFHVNKEMILRKRINVQSIVDALAGNYNCFREGRK--LPRLFMTSQSCVLGNEQKNLE 1356
++HFHV+K+ +LR+R+NVQ + + L +YNC RE LPRL S++C + K +
Sbjct: 1069 IMHFHVSKDKMLRRRLNVQLVKNELIKHYNCMRERMNPMLPRLCFVSKNCSSAYKWKEHD 1128
Query: 1355 E-LCISVGAVESSERKEQDEPSPTLLDTIRDSVMPVLLQTLIKGFKEFKQVDILWDSQPK 1179
+ C+SV A E+SE Q LDTIRD V+P+LL+T IKGF ++V+IL +S P
Sbjct: 1129 DSFCMSVAA-ETSESLIQ-------LDTIRDMVIPLLLETPIKGFWASEKVEILCESLPG 1180
Query: 1178 PDGQLFLKIIMEESCPPRKFWRTLQSACLPIMDMIDWERSRPDGAHDISDVFGIISSYSY 999
+LFL++ M + C P FW LQ AC+PIMD+IDW+ S PD ++IS +GI +++ Y
Sbjct: 1181 SGSELFLRVTMSKKCLPGSFWSDLQDACIPIMDLIDWQCSHPDNVYNISGTYGIDAAWKY 1240
Query: 998 FLGSLKSAVSDIGRNIHLEHLLLVSDSLSVTGEFHGLSAKGIKQQRAHLSISSPFTQACF 819
F+ SLKS +DIGR+IH HL + +D LSVTGEFHGLS KG++QQR +SISSPF QAC
Sbjct: 1241 FVKSLKSVTADIGRDIHKRHLFMAADCLSVTGEFHGLSTKGLRQQRNDMSISSPFAQACL 1300
Query: 818 CNPEKCFIEAAKHSSTDHLYGTVDAVAWGQEAPVGTGGPFKIIYSGKVHSPKQTENIYEI 639
NP CF+ AAK S DHL GT+DAVAWG+EAP GTGGPF+I+YSGKVH+ + E IY
Sbjct: 1301 SNPVNCFVNAAKQGSMDHLSGTLDAVAWGKEAPSGTGGPFEIVYSGKVHNLTRGEGIY-- 1358
Query: 638 LLKQKHDSSSQIPGAD-------------KWKGQP-------GVDNAGGSMRRWNEH--- 528
K H +++ D KWK QP G +H
Sbjct: 1359 --KNLHSIKAELQQGDGEVCMAANQTVPAKWKQQPKYSTNFDGAKETIDPQTSDEDHLKE 1416
Query: 527 --------NC--------------TTKKEKNVVFSSQPASVRIGSWDNISAMSSSLSRML 414
NC K S+ +S + SW ++ M SSL +L
Sbjct: 1417 RIVSKFRTNCKGYNKQQQISANDFLAKSHLTFGLRSKFSSESVSSWTDVVDMCSSLRTIL 1476
Query: 413 HQYPVNHQLNEADKSLLMEALMYHPKKDAXXXXXXXXXXXGHSPFHPKSRCFILIRNDGT 234
++YP++ L+E D S L+EAL YHPK+ A G SP HP SRCF+L+R+DG+
Sbjct: 1477 YKYPIDGFLDEKDNSSLIEALNYHPKRAAKIGSGIQKIKVGCSPLHPGSRCFVLLRSDGS 1536
Query: 233 TEDFSYRKCVIEAANQISPEFGLLVEKEL 147
EDFSYRKCV+ AA ISPEFG +V K++
Sbjct: 1537 LEDFSYRKCVVGAAKLISPEFGSIVHKKI 1565
>ref|XP_010278507.1| PREDICTED: DNA-directed RNA polymerase IV subunit 1 isoform X1
[Nelumbo nucifera]
Length = 1489
Score = 430 bits (1105), Expect = e-117
Identities = 245/547 (44%), Positives = 333/547 (60%), Gaps = 34/547 (6%)
Frame = -3
Query: 1712 RTASLALSNKLKRLNYGFEYGALAVKNHLDRVFFSDIVTSVMIFYSAHDAKGTKGMRLSP 1533
+TASL LS KL R GFEYGA VKNHL+RVFFSD+V++VM+ +S + M SP
Sbjct: 948 QTASLFLSKKLGRWICGFEYGATEVKNHLERVFFSDVVSTVMVIFSP---QRHSQMSASP 1004
Query: 1532 WVLHFHVNKEMILRKRINVQSIVDALAGNY----------NCFREGRK------------ 1419
WV HFHV KEM+ R+ +N+QSI+DAL N N E RK
Sbjct: 1005 WVCHFHVCKEMMERRGLNIQSIIDALQRNSTGEQAKINLRNILNELRKKYKLSGKQVKIK 1064
Query: 1418 LPRLFMTSQSCVLGNEQKNLEELCISVGAVESSERKEQDEPSPTLLDTIRDSVMPVLLQT 1239
LP L + S+ C ++++N CI V + + +Q LDT+RD V+P L +T
Sbjct: 1065 LPNLMILSRDCTFIDQRENGRTFCIVVIVEITKDSSKQ-------LDTVRDLVVPFLSRT 1117
Query: 1238 LIKGFKEFKQVDILWDSQPKPD-------GQLFLKIIMEESCPPRKFWRTLQSACLPIMD 1080
+IKGF EFK VDILW+ P+ G+L+LK+ M E C KFW +LQ+ACLP+MD
Sbjct: 1118 VIKGFLEFKSVDILWNDLPQSSKSHMFSSGELYLKVFMSEDCERTKFWSSLQNACLPVMD 1177
Query: 1079 MIDWERSRPDGAHDISDVFGIISSYSYFLGSLKSAVSDIGRNIHLEHLLLVSDSLSVTGE 900
+IDWERS PD ++I +GI + + YFL SLK A+SDIG+ + LEHLLLV++SLS TGE
Sbjct: 1178 LIDWERSYPDNIYNIVCAYGIDAGWKYFLRSLKFALSDIGKTVLLEHLLLVANSLSFTGE 1237
Query: 899 FHGLSAKGIKQQRAHLSISSPFTQACFCNPEKCFIEAAKHSSTDHLYGTVDAVAWGQEAP 720
F GLSAKGIK+Q S+SSPF QACF NP CFI+AAK + D L G +D+V+WG++ P
Sbjct: 1238 FLGLSAKGIKRQMDQASVSSPFMQACFSNPGACFIKAAKEGAVDDLQGILDSVSWGKKVP 1297
Query: 719 VGTGGPFKIIYSGKVHSPKQTENIYEILLKQKHDSSSQIPGADKWKGQPGVDNAGGSMRR 540
+GTGG F I+YSGK +P + NIY L H+S S G + G D +
Sbjct: 1298 IGTGGHFDILYSGKGFTPAKPTNIYSALC---HESKSH--GENVETGL--TDACRKVCCK 1350
Query: 539 WNEHNCTTKKE---KNVVFSSQPASV--RIGSWDNISAMSSSLSRMLHQYPVNHQLNEAD 375
W + + K+ K + P+SV I S +++ ++SSL +LH+YP+N L+E D
Sbjct: 1351 WEKQSFYASKDPLPKGDSSENLPSSVLRSIYSREDVLKLNSSLKHILHKYPINDYLSEVD 1410
Query: 374 KSLLMEALMYHPKKDAXXXXXXXXXXXGHSPFHPKSRCFILIRNDGTTEDFSYRKCVIEA 195
KS+L+ AL +HPK++ G+ H +SRCF+L+R DGT EDFSYRKC++ A
Sbjct: 1411 KSILLRALYFHPKRNQKMGTGPKDIKVGYHSEHQQSRCFMLVRTDGTIEDFSYRKCILGA 1470
Query: 194 ANQISPE 174
+I P+
Sbjct: 1471 LEKICPQ 1477
>ref|XP_010278508.1| PREDICTED: DNA-directed RNA polymerase IV subunit 1 isoform X2
[Nelumbo nucifera]
Length = 1373
Score = 424 bits (1089), Expect = e-115
Identities = 246/554 (44%), Positives = 333/554 (60%), Gaps = 41/554 (7%)
Frame = -3
Query: 1712 RTASLALSNKLKRLNYGFEYGALAVKNHLDRVFFSDIVTSVMIFYSAHDAKGTKGMRLSP 1533
+TASL LS KL R GFEYGA VKNHL+RVFFSD+V++VM+ +S + M SP
Sbjct: 826 QTASLFLSKKLGRWICGFEYGATEVKNHLERVFFSDVVSTVMVIFSP---QRHSQMSASP 882
Query: 1532 WVLHFHVNKEMILRKRINVQSIVDALAGNY----------NCFREGRK------------ 1419
WV HFHV KEM+ R+ +N+QSI+DAL N N E RK
Sbjct: 883 WVCHFHVCKEMMERRGLNIQSIIDALQRNSTGEQAKINLRNILNELRKKYKLSGKQVKIK 942
Query: 1418 LPRLFMTSQSCVLGNEQKNLEELCISVGAVESSERKEQDEPSPTLLDTIRDSVMPVLLQT 1239
LP L + S+ C ++++N CI V + + +Q LDT+RD V+P L +T
Sbjct: 943 LPNLMILSRDCTFIDQRENGRTFCIVVIVEITKDSSKQ-------LDTVRDLVVPFLSRT 995
Query: 1238 LIKGFKEFKQVDILWDSQPKPD-------GQLFLKIIMEESCPPRKFWRTLQSACLPIMD 1080
+IKGF EFK VDILW+ P+ G+L+LK+ M E C KFW +LQ+ACLP+MD
Sbjct: 996 VIKGFLEFKSVDILWNDLPQSSKSHMFSSGELYLKVFMSEDCERTKFWSSLQNACLPVMD 1055
Query: 1079 MIDWERSRPDGAHDISDVFGIISSYSYFLGSLKSAVSDIGRNIHLEHLLLVSDSLSVTGE 900
+IDWERS PD ++I +GI + + YFL SLK A+SDIG+ + LEHLLLV++SLS TGE
Sbjct: 1056 LIDWERSYPDNIYNIVCAYGIDAGWKYFLRSLKFALSDIGKTVLLEHLLLVANSLSFTGE 1115
Query: 899 FHGLSAKGIKQQRAHLSISSPFTQACFCNPEKCFIEAAKHSSTDHLYGTVDAVAWGQEAP 720
F GLSAKGIK+Q S+SSPF QACF NP CFI+AAK + D L G +D+V+WG++ P
Sbjct: 1116 FLGLSAKGIKRQMDQASVSSPFMQACFSNPGACFIKAAKEGAVDDLQGILDSVSWGKKVP 1175
Query: 719 VGTGGPFKIIYSGKVHSPKQTENIYEILLKQKHDSSSQIPGADKWKGQPGVDNAGGSMRR 540
+GTGG F I+YSGK +P + NIY L H+S S G + G D +
Sbjct: 1176 IGTGGHFDILYSGKGFTPAKPTNIYSALC---HESKSH--GENVETGL--TDACRKVCCK 1228
Query: 539 WNEHNCTTKKE---KNVVFSSQPASV--RIGSWDNISAMSSSLSRMLHQYPVNHQLNEAD 375
W + + K+ K + P+SV I S +++ ++SSL +LH+YP+N L+E D
Sbjct: 1229 WEKQSFYASKDPLPKGDSSENLPSSVLRSIYSREDVLKLNSSLKHILHKYPINDYLSEVD 1288
Query: 374 KSLLMEALMYHPKKD-------AXXXXXXXXXXXGHSPFHPKSRCFILIRNDGTTEDFSY 216
KS+L+ AL +HPK++ HS H +SRCF+L+R DGT EDFSY
Sbjct: 1289 KSILLRALYFHPKRNQKMGTGPKDIKVLPRIRVGYHSE-HQQSRCFMLVRTDGTIEDFSY 1347
Query: 215 RKCVIEAANQISPE 174
RKC++ A +I P+
Sbjct: 1348 RKCILGALEKICPQ 1361
>ref|XP_008646771.1| PREDICTED: DNA dependent RNA polymerase D largest subunit isoform X1
[Zea mays]
Length = 1392
Score = 420 bits (1079), Expect = e-114
Identities = 231/522 (44%), Positives = 322/522 (61%), Gaps = 6/522 (1%)
Frame = -3
Query: 1700 LALSNKLKRLNYGFEYGALAVKNHLDRVFFSDIVTSVMIFYSAHDAKGTKGMRLSPWVLH 1521
L LS LK+ YG EY +L VKNHL+RV FSD+V ++MI Y HD +GM W H
Sbjct: 887 LFLSRHLKKYRYGLEYASLEVKNHLERVNFSDLVETIMIIYDGHDKIRNEGM----WTTH 942
Query: 1520 FHVNKEMILRKRINVQSIVDALAGNYNCFRE--GRKLPRLFMTSQSCVLGNEQKNLEELC 1347
FH+NK M+ +KR+ ++ +VD LA Y+ R+ +P + ++ + C++G+E C
Sbjct: 943 FHINKAMMKKKRLGLRFVVDELAKEYDTTRDQLNNAIPSIRISRRKCLVGDEGVKSSSCC 1002
Query: 1346 ISVGAVESSERKEQDEPSPTLLDTIRDSVMPVLLQTLIKGFKEFKQVDILWDSQPKPDGQ 1167
I+V V +ER S + LDTI+ V+P +L TL+KGF EFK V+I Q DG+
Sbjct: 1003 IAV--VAHAERN-----SISQLDTIKTRVIPSILDTLLKGFLEFKDVEI----QCPHDGE 1051
Query: 1166 LFLKIIMEESCPPRKFWRTLQSACLPIMDMIDWERSRPDGAHDISDVFGIISSYSYFLGS 987
L +K+ M E C +FW TLQ+AC+P+M++IDWE S+P DI +GI S++ YF+ S
Sbjct: 1052 LLVKVCMSEHCKGGRFWPTLQNACIPVMELIDWELSQPSNVSDIFCSYGIDSAWKYFVES 1111
Query: 986 LKSAVSDIGRNIHLEHLLLVSDSLSVTGEFHGLSAKGIKQQRAHLSISSPFTQACFCNPE 807
LKSA +D GRNI EHLL+++DSLSVTG+FH LS++G+KQQR LSISSPF++ACF P
Sbjct: 1112 LKSATTDTGRNIRREHLLVIADSLSVTGQFHALSSQGLKQQRTRLSISSPFSEACFSRPA 1171
Query: 806 KCFIEAAKHSSTDHLYGTVDAVAWGQEAPVGTGGPFKIIYSGKVHSPKQTENIYEILLKQ 627
+ FI AAK S D+L G++DAVAWG+E GT GPF+I++SGK H P+Q E+IY+ L
Sbjct: 1172 QSFINAAKQCSVDNLCGSLDAVAWGKEPFNGTSGPFEIMHSGKPHEPEQNESIYDFLC-- 1229
Query: 626 KHDSSSQIPGADKWK---GQPGVDNAG-GSMRRWNEHNCTTKKEKNVVFSSQPASVRIGS 459
SS++ +K + +NA + + TT + ++
Sbjct: 1230 ----SSKVRNFEKNHLDTRRQSTENASICRLACKSSKGSTTVNGVAITIDQDFLHAKVSI 1285
Query: 458 WDNISAMSSSLSRMLHQYPVNHQLNEADKSLLMEALMYHPKKDAXXXXXXXXXXXGHSPF 279
WDNI M +SL ML +YP+N + E DKS L+EAL +H + G +P
Sbjct: 1286 WDNIIDMRTSLQNMLREYPLNGYVAEPDKSQLIEALKFHSRGAEKIGVGVREIKIGLNPS 1345
Query: 278 HPKSRCFILIRNDGTTEDFSYRKCVIEAANQISPEFGLLVEK 153
HP +RCFIL+RND TTEDFSY KCV AA+ ISP+ G ++K
Sbjct: 1346 HPGTRCFILLRNDDTTEDFSYHKCVQGAADSISPQLGSYLKK 1387
>gb|ACL30982.1| mutant DNA dependent RNA polymerase D largest subunit rpd1-8 [Zea
mays]
Length = 1444
Score = 420 bits (1079), Expect = e-114
Identities = 231/522 (44%), Positives = 322/522 (61%), Gaps = 6/522 (1%)
Frame = -3
Query: 1700 LALSNKLKRLNYGFEYGALAVKNHLDRVFFSDIVTSVMIFYSAHDAKGTKGMRLSPWVLH 1521
L LS LK+ YG EY +L VKNHL+RV FSD+V ++MI Y HD +GM W H
Sbjct: 939 LFLSRHLKKYRYGLEYASLEVKNHLERVNFSDLVETIMIIYDGHDKIRNEGM----WTTH 994
Query: 1520 FHVNKEMILRKRINVQSIVDALAGNYNCFRE--GRKLPRLFMTSQSCVLGNEQKNLEELC 1347
FH+NK M+ +KR+ ++ +VD LA Y+ R+ +P + ++ + C++G+E C
Sbjct: 995 FHINKAMMKKKRLGLRFVVDELAKEYDTTRDQLNNAIPSIRISRRKCLVGDEGVKSSSCC 1054
Query: 1346 ISVGAVESSERKEQDEPSPTLLDTIRDSVMPVLLQTLIKGFKEFKQVDILWDSQPKPDGQ 1167
I+V V +ER S + LDTI+ V+P +L TL+KGF EFK V+I Q DG+
Sbjct: 1055 IAV--VAHAERN-----SISQLDTIKTRVIPSILDTLLKGFLEFKDVEI----QCPHDGE 1103
Query: 1166 LFLKIIMEESCPPRKFWRTLQSACLPIMDMIDWERSRPDGAHDISDVFGIISSYSYFLGS 987
L +K+ M E C +FW TLQ+AC+P+M++IDWE S+P DI +GI S++ YF+ S
Sbjct: 1104 LLVKVCMSEHCKGGRFWPTLQNACIPVMELIDWELSQPSNVSDIFCSYGIDSAWKYFVES 1163
Query: 986 LKSAVSDIGRNIHLEHLLLVSDSLSVTGEFHGLSAKGIKQQRAHLSISSPFTQACFCNPE 807
LKSA +D GRNI EHLL+++DSLSVTG+FH LS++G+KQQR LSISSPF++ACF P
Sbjct: 1164 LKSATTDTGRNIRREHLLVIADSLSVTGQFHALSSQGLKQQRTRLSISSPFSEACFSRPA 1223
Query: 806 KCFIEAAKHSSTDHLYGTVDAVAWGQEAPVGTGGPFKIIYSGKVHSPKQTENIYEILLKQ 627
+ FI AAK S D+L G++DAVAWG+E GT GPF+I++SGK H P+Q E+IY+ L
Sbjct: 1224 QSFINAAKQCSVDNLCGSLDAVAWGKEPFNGTSGPFEIMHSGKPHEPEQNESIYDFLC-- 1281
Query: 626 KHDSSSQIPGADKWK---GQPGVDNAG-GSMRRWNEHNCTTKKEKNVVFSSQPASVRIGS 459
SS++ +K + +NA + + TT + ++
Sbjct: 1282 ----SSKVRNFEKNHLDTRRQSTENASICRLACKSSKGSTTVNGVAITIDQDFLHAKVSI 1337
Query: 458 WDNISAMSSSLSRMLHQYPVNHQLNEADKSLLMEALMYHPKKDAXXXXXXXXXXXGHSPF 279
WDNI M +SL ML +YP+N + E DKS L+EAL +H + G +P
Sbjct: 1338 WDNIIDMRTSLQNMLREYPLNGYVAEPDKSQLIEALKFHSRGAEKIGVGVREIKIGLNPS 1397
Query: 278 HPKSRCFILIRNDGTTEDFSYRKCVIEAANQISPEFGLLVEK 153
HP +RCFIL+RND TTEDFSY KCV AA+ ISP+ G ++K
Sbjct: 1398 HPGTRCFILLRNDDTTEDFSYHKCVQGAADSISPQLGSYLKK 1439
>ref|NP_001182824.1| DNA dependent RNA polymerase D largest subunit [Zea mays]
gi|219662980|gb|ACL30979.1| DNA dependent RNA polymerase
D largest subunit [Zea mays] gi|414869425|tpg|DAA47982.1|
TPA: putative DNA dependent RNA polymerase D largest
subunit family protein [Zea mays]
gi|414869426|tpg|DAA47983.1| TPA: putative DNA dependent
RNA polymerase D largest subunit family protein [Zea
mays]
Length = 1444
Score = 420 bits (1079), Expect = e-114
Identities = 231/522 (44%), Positives = 322/522 (61%), Gaps = 6/522 (1%)
Frame = -3
Query: 1700 LALSNKLKRLNYGFEYGALAVKNHLDRVFFSDIVTSVMIFYSAHDAKGTKGMRLSPWVLH 1521
L LS LK+ YG EY +L VKNHL+RV FSD+V ++MI Y HD +GM W H
Sbjct: 939 LFLSRHLKKYRYGLEYASLEVKNHLERVNFSDLVETIMIIYDGHDKIRNEGM----WTTH 994
Query: 1520 FHVNKEMILRKRINVQSIVDALAGNYNCFRE--GRKLPRLFMTSQSCVLGNEQKNLEELC 1347
FH+NK M+ +KR+ ++ +VD LA Y+ R+ +P + ++ + C++G+E C
Sbjct: 995 FHINKAMMKKKRLGLRFVVDELAKEYDTTRDQLNNAIPSIRISRRKCLVGDEGVKSSSCC 1054
Query: 1346 ISVGAVESSERKEQDEPSPTLLDTIRDSVMPVLLQTLIKGFKEFKQVDILWDSQPKPDGQ 1167
I+V V +ER S + LDTI+ V+P +L TL+KGF EFK V+I Q DG+
Sbjct: 1055 IAV--VAHAERN-----SISQLDTIKTRVIPSILDTLLKGFLEFKDVEI----QCPHDGE 1103
Query: 1166 LFLKIIMEESCPPRKFWRTLQSACLPIMDMIDWERSRPDGAHDISDVFGIISSYSYFLGS 987
L +K+ M E C +FW TLQ+AC+P+M++IDWE S+P DI +GI S++ YF+ S
Sbjct: 1104 LLVKVCMSEHCKGGRFWPTLQNACIPVMELIDWELSQPSNVSDIFCSYGIDSAWKYFVES 1163
Query: 986 LKSAVSDIGRNIHLEHLLLVSDSLSVTGEFHGLSAKGIKQQRAHLSISSPFTQACFCNPE 807
LKSA +D GRNI EHLL+++DSLSVTG+FH LS++G+KQQR LSISSPF++ACF P
Sbjct: 1164 LKSATTDTGRNIRREHLLVIADSLSVTGQFHALSSQGLKQQRTRLSISSPFSEACFSRPA 1223
Query: 806 KCFIEAAKHSSTDHLYGTVDAVAWGQEAPVGTGGPFKIIYSGKVHSPKQTENIYEILLKQ 627
+ FI AAK S D+L G++DAVAWG+E GT GPF+I++SGK H P+Q E+IY+ L
Sbjct: 1224 QSFINAAKQCSVDNLCGSLDAVAWGKEPFNGTSGPFEIMHSGKPHEPEQNESIYDFLC-- 1281
Query: 626 KHDSSSQIPGADKWK---GQPGVDNAG-GSMRRWNEHNCTTKKEKNVVFSSQPASVRIGS 459
SS++ +K + +NA + + TT + ++
Sbjct: 1282 ----SSKVRNFEKNHLDTRRQSTENASICRLACKSSKGSTTVNGVAITIDQDFLHAKVSI 1337
Query: 458 WDNISAMSSSLSRMLHQYPVNHQLNEADKSLLMEALMYHPKKDAXXXXXXXXXXXGHSPF 279
WDNI M +SL ML +YP+N + E DKS L+EAL +H + G +P
Sbjct: 1338 WDNIIDMRTSLQNMLREYPLNGYVAEPDKSQLIEALKFHSRGAEKIGVGVREIKIGLNPS 1397
Query: 278 HPKSRCFILIRNDGTTEDFSYRKCVIEAANQISPEFGLLVEK 153
HP +RCFIL+RND TTEDFSY KCV AA+ ISP+ G ++K
Sbjct: 1398 HPGTRCFILLRNDDTTEDFSYHKCVQGAADSISPQLGSYLKK 1439
>gb|KQL07953.1| hypothetical protein SETIT_0000652mg, partial [Setaria italica]
Length = 1278
Score = 415 bits (1066), Expect = e-113
Identities = 227/526 (43%), Positives = 318/526 (60%), Gaps = 5/526 (0%)
Frame = -3
Query: 1700 LALSNKLKRLNYGFEYGALAVKNHLDRVFFSDIVTSVMIFYSAHDAKGTKGMRLSPWVLH 1521
L LS LK+ Y EY +L VKNHL+RV FSD+V ++MI Y D K KG PW H
Sbjct: 773 LFLSKHLKKYRYSLEYASLEVKNHLERVNFSDLVETIMIIYDGCD-KTRKG---GPWTTH 828
Query: 1520 FHVNKEMILRKRINVQSIVDALAGNYNCFRE--GRKLPRLFMTSQSCVLGNEQKNLEELC 1347
FH++KEM+ +KR+ + +V+ L Y+ R +P + ++ + C +G++ C
Sbjct: 829 FHISKEMMKKKRLGLGFVVEELTKEYDATRNQLNNAIPSVHISKRKCSVGDQCVQNSACC 888
Query: 1346 ISVGAVESSERKEQDEPSPTLLDTIRDSVMPVLLQTLIKGFKEFKQVDILWDSQPKPDGQ 1167
I++ A S Q LDTI+ V+P +L TL+KGF EFK V+I Q + DG+
Sbjct: 889 ITLVAQAESNSMSQ-------LDTIKKRVIPSILDTLLKGFLEFKDVEI----QCRHDGE 937
Query: 1166 LFLKIIMEESCPPRKFWRTLQSACLPIMDMIDWERSRPDGAHDISDVFGIISSYSYFLGS 987
L +K+ M E C +FW TLQ+AC+P+M++IDWE+S+P +DI +GI S++ F+ S
Sbjct: 938 LLVKVGMSEHCKAGRFWATLQNACIPVMELIDWEQSQPKNVYDIFCSYGIDSAWKCFVES 997
Query: 986 LKSAVSDIGRNIHLEHLLLVSDSLSVTGEFHGLSAKGIKQQRAHLSISSPFTQACFCNPE 807
LKS SDIGRN+ EHLL+V+DSLSVTG+F LS++G+ QQR+ LSISSPF++ACF P
Sbjct: 998 LKSVTSDIGRNVRREHLLIVADSLSVTGQFQALSSQGLNQQRSRLSISSPFSEACFSRPA 1057
Query: 806 KCFIEAAKHSSTDHLYGTVDAVAWGQEAPVGTGGPFKIIYSGKVHSPKQTENIYEILLKQ 627
+ FI AAKH S D+L G++DA+AWG+E GT GPF+I+++GK H P+Q E+IY+ L
Sbjct: 1058 RSFINAAKHCSVDNLCGSLDAIAWGKEPFNGTSGPFEIMHAGKPHEPEQNESIYDFL--- 1114
Query: 626 KHDSSSQIPGADKWKG---QPGVDNAGGSMRRWNEHNCTTKKEKNVVFSSQPASVRIGSW 456
S ++ +K + +NA + T + + ++G W
Sbjct: 1115 ---RSPEVRNFEKDHMDTCRQSTENALRCRLACKSKDSATVQGGAMTIDQGFLHAKVGIW 1171
Query: 455 DNISAMSSSLSRMLHQYPVNHQLNEADKSLLMEALMYHPKKDAXXXXXXXXXXXGHSPFH 276
DNI M +SL ML +YP+N + E DKS L+EAL +HP G +P H
Sbjct: 1172 DNIIDMRTSLQNMLREYPLNGFVKETDKSQLVEALKFHPNGAQKIGVGVREIKIGLNPSH 1231
Query: 275 PKSRCFILIRNDGTTEDFSYRKCVIEAANQISPEFGLLVEKELDPR 138
P +RCFIL+R DGTTEDFSY KCV AAN ISP+ G EK+L R
Sbjct: 1232 PGTRCFILLRKDGTTEDFSYNKCVQGAANSISPQLGSYFEKKLHRR 1277
>ref|XP_006653694.1| PREDICTED: DNA-directed RNA polymerase IV subunit 1-like [Oryza
brachyantha]
Length = 1386
Score = 415 bits (1066), Expect = e-113
Identities = 230/538 (42%), Positives = 317/538 (58%), Gaps = 14/538 (2%)
Frame = -3
Query: 1709 TASLALSNKLKRLNYGFEYGALAVKNHLDRVFFSDIVTSVMIFYSAHDAKGTKGMRLSPW 1530
T L LS L++ YGFEY +L VK+HL+RV FSD+V +VMI Y D + +KG +PW
Sbjct: 871 TGLLFLSKHLRKYRYGFEYASLEVKDHLERVDFSDLVDTVMILYGGSDIQKSKG---NPW 927
Query: 1529 VLHFHVNKEMILRKRINVQSIVDALAGNYNCFRE--GRKLPRLFMTSQSCVLGNEQKNLE 1356
V HFH+N+E + KR+ + +V L YN R+ +P + + S C +GN +
Sbjct: 928 VTHFHLNQEAMKIKRLGLGYVVRELIDQYNALRKQLNNTIPSVCILSSKCSVGNGCVKNQ 987
Query: 1355 ELCIS-VGAVESSERKEQDEPSPTLLDTIRDSVMPVLLQTLIKGFKEFKQVDILWDSQPK 1179
C++ V VES+ S + L I++ V+P +L TL+KGF EFK V + Q +
Sbjct: 988 ACCVTMVVQVESN--------STSQLTIIKERVIPSILATLLKGFLEFKNVKV----QCQ 1035
Query: 1178 PDGQLFLKIIMEESCPPRKFWRTLQSACLPIMDMIDWERSRPDGAHDISDVFGIISSYSY 999
D +L +++ M E C KFW TLQ+AC+PIM++IDWERSRP+ +D+ +GI S++ +
Sbjct: 1036 QDSELVVRVDMSEHCKSGKFWATLQNACIPIMELIDWERSRPERLYDVFCSYGIDSAWKF 1095
Query: 998 FLGSLKSAVSDIGRNIHLEHLLLVSDSLSVTGEFHGLSAKGIKQQRAHLSISSPFTQACF 819
F+ SL+S IGRNI +HLL+V+D LSV+G+FHGLS++G+KQQR LSISSPF++ACF
Sbjct: 1096 FVESLRSTTDAIGRNIRRQHLLVVADCLSVSGQFHGLSSQGLKQQRTSLSISSPFSEACF 1155
Query: 818 CNPEKCFIEAAKHSSTDHLYGTVDAVAWGQEAPVGTGGPFKIIYSGKVHSPKQTENIYEI 639
P FI AAK S D L GT+DA+AWG+E GT GPFKI+YSGK H KQ ENIY
Sbjct: 1156 SRPAHSFINAAKKDSVDKLSGTLDAIAWGKEPCTGTSGPFKILYSGKSHETKQKENIYNF 1215
Query: 638 L-----------LKQKHDSSSQIPGADKWKGQPGVDNAGGSMRRWNEHNCTTKKEKNVVF 492
L L H ++ KW+ N TT ++
Sbjct: 1216 LHNPEIQAFEKNLMDTHRKRTE--KTSKWRS------------ALNSEGITTINGGSISV 1261
Query: 491 SSQPASVRIGSWDNISAMSSSLSRMLHQYPVNHQLNEADKSLLMEALMYHPKKDAXXXXX 312
+ + ++G W+NI M + L ML +Y +N + E DKS L+EAL +HP+
Sbjct: 1262 NQKFLGAKVGIWENIIDMRTCLQNMLREYTLNDIVTEQDKSCLIEALKFHPRGFDKIGAG 1321
Query: 311 XXXXXXGHSPFHPKSRCFILIRNDGTTEDFSYRKCVIEAANQISPEFGLLVEKELDPR 138
G +P HP SRCFI++RND TT DFSY KCV+ AAN +SPE G +EK L R
Sbjct: 1322 IREIKIGVNPGHPNSRCFIVLRNDDTTADFSYNKCVLGAANSVSPELGSYIEKILSNR 1379
>ref|XP_004970758.1| PREDICTED: DNA-directed RNA polymerase IV subunit 1 isoform X4
[Setaria italica]
Length = 1181
Score = 415 bits (1066), Expect = e-113
Identities = 227/526 (43%), Positives = 318/526 (60%), Gaps = 5/526 (0%)
Frame = -3
Query: 1700 LALSNKLKRLNYGFEYGALAVKNHLDRVFFSDIVTSVMIFYSAHDAKGTKGMRLSPWVLH 1521
L LS LK+ Y EY +L VKNHL+RV FSD+V ++MI Y D K KG PW H
Sbjct: 676 LFLSKHLKKYRYSLEYASLEVKNHLERVNFSDLVETIMIIYDGCD-KTRKG---GPWTTH 731
Query: 1520 FHVNKEMILRKRINVQSIVDALAGNYNCFRE--GRKLPRLFMTSQSCVLGNEQKNLEELC 1347
FH++KEM+ +KR+ + +V+ L Y+ R +P + ++ + C +G++ C
Sbjct: 732 FHISKEMMKKKRLGLGFVVEELTKEYDATRNQLNNAIPSVHISKRKCSVGDQCVQNSACC 791
Query: 1346 ISVGAVESSERKEQDEPSPTLLDTIRDSVMPVLLQTLIKGFKEFKQVDILWDSQPKPDGQ 1167
I++ A S Q LDTI+ V+P +L TL+KGF EFK V+I Q + DG+
Sbjct: 792 ITLVAQAESNSMSQ-------LDTIKKRVIPSILDTLLKGFLEFKDVEI----QCRHDGE 840
Query: 1166 LFLKIIMEESCPPRKFWRTLQSACLPIMDMIDWERSRPDGAHDISDVFGIISSYSYFLGS 987
L +K+ M E C +FW TLQ+AC+P+M++IDWE+S+P +DI +GI S++ F+ S
Sbjct: 841 LLVKVGMSEHCKAGRFWATLQNACIPVMELIDWEQSQPKNVYDIFCSYGIDSAWKCFVES 900
Query: 986 LKSAVSDIGRNIHLEHLLLVSDSLSVTGEFHGLSAKGIKQQRAHLSISSPFTQACFCNPE 807
LKS SDIGRN+ EHLL+V+DSLSVTG+F LS++G+ QQR+ LSISSPF++ACF P
Sbjct: 901 LKSVTSDIGRNVRREHLLIVADSLSVTGQFQALSSQGLNQQRSRLSISSPFSEACFSRPA 960
Query: 806 KCFIEAAKHSSTDHLYGTVDAVAWGQEAPVGTGGPFKIIYSGKVHSPKQTENIYEILLKQ 627
+ FI AAKH S D+L G++DA+AWG+E GT GPF+I+++GK H P+Q E+IY+ L
Sbjct: 961 RSFINAAKHCSVDNLCGSLDAIAWGKEPFNGTSGPFEIMHAGKPHEPEQNESIYDFL--- 1017
Query: 626 KHDSSSQIPGADKWKG---QPGVDNAGGSMRRWNEHNCTTKKEKNVVFSSQPASVRIGSW 456
S ++ +K + +NA + T + + ++G W
Sbjct: 1018 ---RSPEVRNFEKDHMDTCRQSTENALRCRLACKSKDSATVQGGAMTIDQGFLHAKVGIW 1074
Query: 455 DNISAMSSSLSRMLHQYPVNHQLNEADKSLLMEALMYHPKKDAXXXXXXXXXXXGHSPFH 276
DNI M +SL ML +YP+N + E DKS L+EAL +HP G +P H
Sbjct: 1075 DNIIDMRTSLQNMLREYPLNGFVKETDKSQLVEALKFHPNGAQKIGVGVREIKIGLNPSH 1134
Query: 275 PKSRCFILIRNDGTTEDFSYRKCVIEAANQISPEFGLLVEKELDPR 138
P +RCFIL+R DGTTEDFSY KCV AAN ISP+ G EK+L R
Sbjct: 1135 PGTRCFILLRKDGTTEDFSYNKCVQGAANSISPQLGSYFEKKLHRR 1180
>ref|XP_012701776.1| PREDICTED: DNA-directed RNA polymerase IV subunit 1 isoform X3
[Setaria italica]
Length = 1362
Score = 415 bits (1066), Expect = e-113
Identities = 227/526 (43%), Positives = 318/526 (60%), Gaps = 5/526 (0%)
Frame = -3
Query: 1700 LALSNKLKRLNYGFEYGALAVKNHLDRVFFSDIVTSVMIFYSAHDAKGTKGMRLSPWVLH 1521
L LS LK+ Y EY +L VKNHL+RV FSD+V ++MI Y D K KG PW H
Sbjct: 857 LFLSKHLKKYRYSLEYASLEVKNHLERVNFSDLVETIMIIYDGCD-KTRKG---GPWTTH 912
Query: 1520 FHVNKEMILRKRINVQSIVDALAGNYNCFRE--GRKLPRLFMTSQSCVLGNEQKNLEELC 1347
FH++KEM+ +KR+ + +V+ L Y+ R +P + ++ + C +G++ C
Sbjct: 913 FHISKEMMKKKRLGLGFVVEELTKEYDATRNQLNNAIPSVHISKRKCSVGDQCVQNSACC 972
Query: 1346 ISVGAVESSERKEQDEPSPTLLDTIRDSVMPVLLQTLIKGFKEFKQVDILWDSQPKPDGQ 1167
I++ A S Q LDTI+ V+P +L TL+KGF EFK V+I Q + DG+
Sbjct: 973 ITLVAQAESNSMSQ-------LDTIKKRVIPSILDTLLKGFLEFKDVEI----QCRHDGE 1021
Query: 1166 LFLKIIMEESCPPRKFWRTLQSACLPIMDMIDWERSRPDGAHDISDVFGIISSYSYFLGS 987
L +K+ M E C +FW TLQ+AC+P+M++IDWE+S+P +DI +GI S++ F+ S
Sbjct: 1022 LLVKVGMSEHCKAGRFWATLQNACIPVMELIDWEQSQPKNVYDIFCSYGIDSAWKCFVES 1081
Query: 986 LKSAVSDIGRNIHLEHLLLVSDSLSVTGEFHGLSAKGIKQQRAHLSISSPFTQACFCNPE 807
LKS SDIGRN+ EHLL+V+DSLSVTG+F LS++G+ QQR+ LSISSPF++ACF P
Sbjct: 1082 LKSVTSDIGRNVRREHLLIVADSLSVTGQFQALSSQGLNQQRSRLSISSPFSEACFSRPA 1141
Query: 806 KCFIEAAKHSSTDHLYGTVDAVAWGQEAPVGTGGPFKIIYSGKVHSPKQTENIYEILLKQ 627
+ FI AAKH S D+L G++DA+AWG+E GT GPF+I+++GK H P+Q E+IY+ L
Sbjct: 1142 RSFINAAKHCSVDNLCGSLDAIAWGKEPFNGTSGPFEIMHAGKPHEPEQNESIYDFL--- 1198
Query: 626 KHDSSSQIPGADKWKG---QPGVDNAGGSMRRWNEHNCTTKKEKNVVFSSQPASVRIGSW 456
S ++ +K + +NA + T + + ++G W
Sbjct: 1199 ---RSPEVRNFEKDHMDTCRQSTENALRCRLACKSKDSATVQGGAMTIDQGFLHAKVGIW 1255
Query: 455 DNISAMSSSLSRMLHQYPVNHQLNEADKSLLMEALMYHPKKDAXXXXXXXXXXXGHSPFH 276
DNI M +SL ML +YP+N + E DKS L+EAL +HP G +P H
Sbjct: 1256 DNIIDMRTSLQNMLREYPLNGFVKETDKSQLVEALKFHPNGAQKIGVGVREIKIGLNPSH 1315
Query: 275 PKSRCFILIRNDGTTEDFSYRKCVIEAANQISPEFGLLVEKELDPR 138
P +RCFIL+R DGTTEDFSY KCV AAN ISP+ G EK+L R
Sbjct: 1316 PGTRCFILLRKDGTTEDFSYNKCVQGAANSISPQLGSYFEKKLHRR 1361
>ref|XP_012701775.1| PREDICTED: DNA-directed RNA polymerase IV subunit 1 isoform X2
[Setaria italica]
Length = 1450
Score = 415 bits (1066), Expect = e-113
Identities = 227/526 (43%), Positives = 318/526 (60%), Gaps = 5/526 (0%)
Frame = -3
Query: 1700 LALSNKLKRLNYGFEYGALAVKNHLDRVFFSDIVTSVMIFYSAHDAKGTKGMRLSPWVLH 1521
L LS LK+ Y EY +L VKNHL+RV FSD+V ++MI Y D K KG PW H
Sbjct: 945 LFLSKHLKKYRYSLEYASLEVKNHLERVNFSDLVETIMIIYDGCD-KTRKG---GPWTTH 1000
Query: 1520 FHVNKEMILRKRINVQSIVDALAGNYNCFRE--GRKLPRLFMTSQSCVLGNEQKNLEELC 1347
FH++KEM+ +KR+ + +V+ L Y+ R +P + ++ + C +G++ C
Sbjct: 1001 FHISKEMMKKKRLGLGFVVEELTKEYDATRNQLNNAIPSVHISKRKCSVGDQCVQNSACC 1060
Query: 1346 ISVGAVESSERKEQDEPSPTLLDTIRDSVMPVLLQTLIKGFKEFKQVDILWDSQPKPDGQ 1167
I++ A S Q LDTI+ V+P +L TL+KGF EFK V+I Q + DG+
Sbjct: 1061 ITLVAQAESNSMSQ-------LDTIKKRVIPSILDTLLKGFLEFKDVEI----QCRHDGE 1109
Query: 1166 LFLKIIMEESCPPRKFWRTLQSACLPIMDMIDWERSRPDGAHDISDVFGIISSYSYFLGS 987
L +K+ M E C +FW TLQ+AC+P+M++IDWE+S+P +DI +GI S++ F+ S
Sbjct: 1110 LLVKVGMSEHCKAGRFWATLQNACIPVMELIDWEQSQPKNVYDIFCSYGIDSAWKCFVES 1169
Query: 986 LKSAVSDIGRNIHLEHLLLVSDSLSVTGEFHGLSAKGIKQQRAHLSISSPFTQACFCNPE 807
LKS SDIGRN+ EHLL+V+DSLSVTG+F LS++G+ QQR+ LSISSPF++ACF P
Sbjct: 1170 LKSVTSDIGRNVRREHLLIVADSLSVTGQFQALSSQGLNQQRSRLSISSPFSEACFSRPA 1229
Query: 806 KCFIEAAKHSSTDHLYGTVDAVAWGQEAPVGTGGPFKIIYSGKVHSPKQTENIYEILLKQ 627
+ FI AAKH S D+L G++DA+AWG+E GT GPF+I+++GK H P+Q E+IY+ L
Sbjct: 1230 RSFINAAKHCSVDNLCGSLDAIAWGKEPFNGTSGPFEIMHAGKPHEPEQNESIYDFL--- 1286
Query: 626 KHDSSSQIPGADKWKG---QPGVDNAGGSMRRWNEHNCTTKKEKNVVFSSQPASVRIGSW 456
S ++ +K + +NA + T + + ++G W
Sbjct: 1287 ---RSPEVRNFEKDHMDTCRQSTENALRCRLACKSKDSATVQGGAMTIDQGFLHAKVGIW 1343
Query: 455 DNISAMSSSLSRMLHQYPVNHQLNEADKSLLMEALMYHPKKDAXXXXXXXXXXXGHSPFH 276
DNI M +SL ML +YP+N + E DKS L+EAL +HP G +P H
Sbjct: 1344 DNIIDMRTSLQNMLREYPLNGFVKETDKSQLVEALKFHPNGAQKIGVGVREIKIGLNPSH 1403
Query: 275 PKSRCFILIRNDGTTEDFSYRKCVIEAANQISPEFGLLVEKELDPR 138
P +RCFIL+R DGTTEDFSY KCV AAN ISP+ G EK+L R
Sbjct: 1404 PGTRCFILLRKDGTTEDFSYNKCVQGAANSISPQLGSYFEKKLHRR 1449
>ref|XP_004970757.1| PREDICTED: DNA-directed RNA polymerase IV subunit 1 isoform X1
[Setaria italica] gi|835980385|ref|XP_012701774.1|
PREDICTED: DNA-directed RNA polymerase IV subunit 1
isoform X1 [Setaria italica]
Length = 1451
Score = 415 bits (1066), Expect = e-113
Identities = 227/526 (43%), Positives = 318/526 (60%), Gaps = 5/526 (0%)
Frame = -3
Query: 1700 LALSNKLKRLNYGFEYGALAVKNHLDRVFFSDIVTSVMIFYSAHDAKGTKGMRLSPWVLH 1521
L LS LK+ Y EY +L VKNHL+RV FSD+V ++MI Y D K KG PW H
Sbjct: 946 LFLSKHLKKYRYSLEYASLEVKNHLERVNFSDLVETIMIIYDGCD-KTRKG---GPWTTH 1001
Query: 1520 FHVNKEMILRKRINVQSIVDALAGNYNCFRE--GRKLPRLFMTSQSCVLGNEQKNLEELC 1347
FH++KEM+ +KR+ + +V+ L Y+ R +P + ++ + C +G++ C
Sbjct: 1002 FHISKEMMKKKRLGLGFVVEELTKEYDATRNQLNNAIPSVHISKRKCSVGDQCVQNSACC 1061
Query: 1346 ISVGAVESSERKEQDEPSPTLLDTIRDSVMPVLLQTLIKGFKEFKQVDILWDSQPKPDGQ 1167
I++ A S Q LDTI+ V+P +L TL+KGF EFK V+I Q + DG+
Sbjct: 1062 ITLVAQAESNSMSQ-------LDTIKKRVIPSILDTLLKGFLEFKDVEI----QCRHDGE 1110
Query: 1166 LFLKIIMEESCPPRKFWRTLQSACLPIMDMIDWERSRPDGAHDISDVFGIISSYSYFLGS 987
L +K+ M E C +FW TLQ+AC+P+M++IDWE+S+P +DI +GI S++ F+ S
Sbjct: 1111 LLVKVGMSEHCKAGRFWATLQNACIPVMELIDWEQSQPKNVYDIFCSYGIDSAWKCFVES 1170
Query: 986 LKSAVSDIGRNIHLEHLLLVSDSLSVTGEFHGLSAKGIKQQRAHLSISSPFTQACFCNPE 807
LKS SDIGRN+ EHLL+V+DSLSVTG+F LS++G+ QQR+ LSISSPF++ACF P
Sbjct: 1171 LKSVTSDIGRNVRREHLLIVADSLSVTGQFQALSSQGLNQQRSRLSISSPFSEACFSRPA 1230
Query: 806 KCFIEAAKHSSTDHLYGTVDAVAWGQEAPVGTGGPFKIIYSGKVHSPKQTENIYEILLKQ 627
+ FI AAKH S D+L G++DA+AWG+E GT GPF+I+++GK H P+Q E+IY+ L
Sbjct: 1231 RSFINAAKHCSVDNLCGSLDAIAWGKEPFNGTSGPFEIMHAGKPHEPEQNESIYDFL--- 1287
Query: 626 KHDSSSQIPGADKWKG---QPGVDNAGGSMRRWNEHNCTTKKEKNVVFSSQPASVRIGSW 456
S ++ +K + +NA + T + + ++G W
Sbjct: 1288 ---RSPEVRNFEKDHMDTCRQSTENALRCRLACKSKDSATVQGGAMTIDQGFLHAKVGIW 1344
Query: 455 DNISAMSSSLSRMLHQYPVNHQLNEADKSLLMEALMYHPKKDAXXXXXXXXXXXGHSPFH 276
DNI M +SL ML +YP+N + E DKS L+EAL +HP G +P H
Sbjct: 1345 DNIIDMRTSLQNMLREYPLNGFVKETDKSQLVEALKFHPNGAQKIGVGVREIKIGLNPSH 1404
Query: 275 PKSRCFILIRNDGTTEDFSYRKCVIEAANQISPEFGLLVEKELDPR 138
P +RCFIL+R DGTTEDFSY KCV AAN ISP+ G EK+L R
Sbjct: 1405 PGTRCFILLRKDGTTEDFSYNKCVQGAANSISPQLGSYFEKKLHRR 1450
>ref|XP_003566523.1| PREDICTED: DNA-directed RNA polymerase IV subunit 1 [Brachypodium
distachyon] gi|721640272|ref|XP_010231681.1| PREDICTED:
DNA-directed RNA polymerase IV subunit 1 [Brachypodium
distachyon] gi|944071889|gb|KQK07373.1| hypothetical
protein BRADI_2g34876 [Brachypodium distachyon]
Length = 1470
Score = 412 bits (1060), Expect = e-112
Identities = 223/523 (42%), Positives = 318/523 (60%), Gaps = 2/523 (0%)
Frame = -3
Query: 1700 LALSNKLKRLNYGFEYGALAVKNHLDRVFFSDIVTSVMIFYSAHDAKGTKGMRLSPWVLH 1521
L LS LK+ YGFEY +L V+N+L+ + FS++V +VMI Y + TKG SPW+ H
Sbjct: 959 LFLSKNLKKYRYGFEYASLYVQNYLEPMDFSELVNTVMIQYDGGGVQKTKG---SPWITH 1015
Query: 1520 FHVNKEMILRKRINVQSIVDALAGNYNCFRE--GRKLPRLFMTSQSCVLGNEQKNLEELC 1347
FH++KEM+ RKR+ ++ +V+ L +YN R+ +P+++++ C ++ N + C
Sbjct: 1016 FHISKEMMKRKRLGLRLLVEDLTEHYNAKRDQLNNVIPKVYISKCKCSDDDDCINNQTCC 1075
Query: 1346 ISVGAVESSERKEQDEPSPTLLDTIRDSVMPVLLQTLIKGFKEFKQVDILWDSQPKPDGQ 1167
I+V A + E + S + LD ++ +PVLL T +KGF EFK V+I Q + D +
Sbjct: 1076 ITVVAQD-----ESNSTSTSQLDDLKKRAIPVLLATPVKGFLEFKDVEI----QCQRDNE 1126
Query: 1166 LFLKIIMEESCPPRKFWRTLQSACLPIMDMIDWERSRPDGAHDISDVFGIISSYSYFLGS 987
L +K+ M + C FW TL+ AC+ IM +IDWERSRP +DI GI S++ YF+ S
Sbjct: 1127 LVVKVNMSKHCKSGIFWTTLKKACIGIMGLIDWERSRPGSVYDIFCPCGIDSAWKYFVES 1186
Query: 986 LKSAVSDIGRNIHLEHLLLVSDSLSVTGEFHGLSAKGIKQQRAHLSISSPFTQACFCNPE 807
L+S DIGRNIH EHLL+V+D+LSV+G+FHGLS++G+KQQR LS SSPF++ACF P
Sbjct: 1187 LRSKTDDIGRNIHREHLLVVADTLSVSGQFHGLSSQGLKQQRTQLSTSSPFSEACFSRPA 1246
Query: 806 KCFIEAAKHSSTDHLYGTVDAVAWGQEAPVGTGGPFKIIYSGKVHSPKQTENIYEILLKQ 627
FI+AAK S D+L G +DA+AWG+E P GT GPFKI+Y+GK H P Q ENIY L
Sbjct: 1247 DTFIKAAKQCSVDNLCGNIDALAWGKEPPAGTSGPFKIMYAGKPHEPVQNENIYGFL--- 1303
Query: 626 KHDSSSQIPGADKWKGQPGVDNAGGSMRRWNEHNCTTKKEKNVVFSSQPASVRIGSWDNI 447
+ ++ G +K + + RW+ N T + ++G WD+I
Sbjct: 1304 ---HNPEVWGPEKNHMETDSTRTKNASERWSSGNATF-NGGTISVEQNYLGAKVGVWDSI 1359
Query: 446 SAMSSSLSRMLHQYPVNHQLNEADKSLLMEALMYHPKKDAXXXXXXXXXXXGHSPFHPKS 267
M + L ML +Y ++ + E DKS ++EAL +HP+ G P HP +
Sbjct: 1360 IDMRTCLQNMLREYQLDEYVVELDKSRVIEALRFHPRGREKIGVGIRDIKIGQHPSHPGT 1419
Query: 266 RCFILIRNDGTTEDFSYRKCVIEAANQISPEFGLLVEKELDPR 138
RCFIL+RND TTED SY+KCV AA+ ISP+ G +EK L R
Sbjct: 1420 RCFILVRNDDTTEDVSYKKCVQGAADSISPQLGSHMEKILQTR 1462
>ref|XP_006661522.1| PREDICTED: DNA-directed RNA polymerase IV subunit 1-like [Oryza
brachyantha]
Length = 1492
Score = 402 bits (1032), Expect = e-109
Identities = 224/531 (42%), Positives = 318/531 (59%), Gaps = 10/531 (1%)
Frame = -3
Query: 1709 TASLALSNKLKRLNYGFEYGALAVKNHLDRVFFSDIVTSVMIFYSAHDAKGTKGMRLSPW 1530
T L LS L++ YGFEY +L VK+HL+RV FSD+V +VMI Y D + T+G +PW
Sbjct: 977 TGLLFLSKHLRKYRYGFEYASLQVKDHLERVDFSDLVDAVMILYGGSDMQKTQG---NPW 1033
Query: 1529 VLHFHVNKEMILRKRINVQSIVDALAGNYNCFRE--GRKLPRLFMTSQSCVLGNEQKNLE 1356
+ HFH+++E + KR+ + IV L YN R+ +P + +++ +C +GNE
Sbjct: 1034 ITHFHLSQETMKIKRLRLGFIVRELIEQYNALRKQSNNTIPSVCISNSNCSVGNECVKNC 1093
Query: 1355 ELCIS-VGAVESSERKEQDEPSPTLLDTIRDSVMPVLLQTLIKGFKEFKQVDILWDSQPK 1179
CI+ V VES+ S + L+ I++ V+P +L+TL+KGF EFK V + +
Sbjct: 1094 TCCITMVAQVESN--------STSQLNIIKERVIPSILETLLKGFLEFKNVKVEYQQ--- 1142
Query: 1178 PDGQLFLKIIMEESCPPRKFWRTLQSACLPIMDMIDWERSRPDGAHDISDVFGIISSYSY 999
D +L +K+ M E C KFW LQ+AC+PIM++IDWERS+P+ +DI +GI S++ +
Sbjct: 1143 -DSELVVKVGMSEHCKSGKFWAALQNACIPIMELIDWERSQPERVNDIFCSYGIDSAWKF 1201
Query: 998 FLGSLKSAVSDIGRNIHLEHLLLVSDSLSVTGEFHGLSAKGIKQQRAHLSISSPFTQACF 819
F+ SL+S IGRNI +HLL+V+D LSV+G+FHGL+++G+K QR LSISSPF++ACF
Sbjct: 1202 FVESLRSTTDAIGRNIRRQHLLVVADCLSVSGQFHGLTSQGLKHQRTSLSISSPFSEACF 1261
Query: 818 CNPEKCFIEAAKHSSTDHLYGTVDAVAWGQEAPVGTGGPFKIIYSGKVHSPKQTENIYEI 639
P FI AAK S D+L GT+DA+AWG+E VGT GPFKI+YSGK KQ ENIY+
Sbjct: 1262 SRPAHSFINAAKQDSVDNLSGTLDAIAWGKEPCVGTSGPFKILYSGKSLETKQNENIYDF 1321
Query: 638 LLKQKHDSSSQIPGADKWKGQPGVDNAGGSMRRWNEHNCTTKKEKNVVFSSQPASV---- 471
L + + +K +D + ++ + K E N + SV
Sbjct: 1322 L------HNPDVQAIEK----SFMDTYRQRTEKTSKQRSSFKSEDNGTITGGAISVIQEF 1371
Query: 470 ---RIGSWDNISAMSSSLSRMLHQYPVNHQLNEADKSLLMEALMYHPKKDAXXXXXXXXX 300
++G W+NI M + L ML +Y +N + E DKS L EAL +HP+
Sbjct: 1372 LDAKVGIWENIIDMRTCLQNMLREYTLNEVVTEQDKSCLKEALKFHPRGYDKIGVGIREI 1431
Query: 299 XXGHSPFHPKSRCFILIRNDGTTEDFSYRKCVIEAANQISPEFGLLVEKEL 147
G +P HP RCFI++RND TT DFSY KCV+ AAN + PE G +EK L
Sbjct: 1432 KVGLNPGHPNLRCFIVLRNDDTTADFSYNKCVLGAANSLKPELGSHMEKIL 1482
>ref|XP_006358859.1| PREDICTED: DNA-directed RNA polymerase IV subunit 1-like isoform X2
[Solanum tuberosum]
Length = 1233
Score = 390 bits (1001), Expect = e-105
Identities = 219/523 (41%), Positives = 316/523 (60%), Gaps = 10/523 (1%)
Frame = -3
Query: 1712 RTASLALSNKLKRLNYGFEYGALAVKNHLDRVFFSDIVTSVMIFYSAHDAKGTKGMRLSP 1533
+TAS+ LS +L R +GFEYGAL VK HL+R+ S++V++VMI +S K T P
Sbjct: 711 KTASMFLSKRLGRWAHGFEYGALEVKGHLERLLLSEVVSTVMICFSPETRKSTHNC---P 767
Query: 1532 WVLHFHVNKEMILRKRINVQSIVDALAGNYNCF--REGRKLPRLFMTSQSCVLGNEQKNL 1359
WV HFH++KE + +R+ ++SI+DAL Y + G LP L +T + C + +K
Sbjct: 768 WVCHFHIDKENVKTRRLKLRSILDALNMRYRAATTKGGNDLPNLHITCKDCSVAEARKEK 827
Query: 1358 EELCISVGAVESSERKEQDEPSPTLLDTIRDSVMPVLLQTLIKGFKEFKQVDILWDSQPK 1179
E+CI+V VE+S+ +PS +LLDT+RD V+P LL+T+IKGF FK+VDILW P
Sbjct: 828 SEICITVSVVETSK-----DPS-SLLDTLRDVVIPFLLETVIKGFSAFKKVDILWKELPS 881
Query: 1178 PD-------GQLFLKIIMEESCPPRKFWRTLQSACLPIMDMIDWERSRPDGAHDISDVFG 1020
P G+L+L++ M ESC KFW L +CL I D+IDWERS PD HD++ +G
Sbjct: 882 PSKSSRGSTGELYLQVFMSESCDRIKFWNALVDSCLQIRDLIDWERSYPDDVHDLTVAYG 941
Query: 1019 IISSYSYFLGSLKSAVSDIGRNIHLEHLLLVSDSLSVTGEFHGLSAKGIKQQRAHLSISS 840
I ++ YFL L SAVS+ G+ I EHL+L +DSL+ TGEF LSAKG+ QR + S
Sbjct: 942 IDVAWEYFLCKLHSAVSETGKKILPEHLVLAADSLTATGEFVPLSAKGLTLQRKAAGVIS 1001
Query: 839 PFTQACFCNPEKCFIEAAKHSSTDHLYGTVDAVAWGQEAPVGTGGPFKIIYSGKVHSPKQ 660
PF QACF NP F+ AAK +D+L G+++++AWG+ +GTG F IIYSGK + P +
Sbjct: 1002 PFMQACFSNPGDSFVRAAKMGLSDNLQGSLESLAWGKTPSIGTGSSFDIIYSGKGYEPAE 1061
Query: 659 TENIYEILLKQKHDSSSQIPGADKWKGQPGVDNAGGSMRRWNEHNCTTKKEKNVVFSSQP 480
++Y +L Q H +S P + G + RR + + KK +S
Sbjct: 1062 PIDVYTLL--QNHVTSG-TPKVKVTLDEDGGMDGKSLARRLDRLDDLNKKSCKSEWSITK 1118
Query: 479 ASVRIGSWDNISAMSSSLSRMLHQYPVNHQLNEADKSLLMEALMYHPKK-DAXXXXXXXX 303
I S+++I +S SL +ML +Y ++ +LNEADK + M AL +HP++ +
Sbjct: 1119 LRSFI-SFNDIKKLSQSLKQMLSKYAIDRELNEADKCIAMMALQFHPRRNEKIGKGAPQE 1177
Query: 302 XXXGHSPFHPKSRCFILIRNDGTTEDFSYRKCVIEAANQISPE 174
G+ + SRCF+L+R+DG+ EDFSYRKC+ A I+P+
Sbjct: 1178 IKIGYHKEYEDSRCFMLVRSDGSVEDFSYRKCMQHALELIAPQ 1220
>ref|XP_006358858.1| PREDICTED: DNA-directed RNA polymerase IV subunit 1-like isoform X1
[Solanum tuberosum]
Length = 1446
Score = 390 bits (1001), Expect = e-105
Identities = 219/523 (41%), Positives = 316/523 (60%), Gaps = 10/523 (1%)
Frame = -3
Query: 1712 RTASLALSNKLKRLNYGFEYGALAVKNHLDRVFFSDIVTSVMIFYSAHDAKGTKGMRLSP 1533
+TAS+ LS +L R +GFEYGAL VK HL+R+ S++V++VMI +S K T P
Sbjct: 924 KTASMFLSKRLGRWAHGFEYGALEVKGHLERLLLSEVVSTVMICFSPETRKSTHNC---P 980
Query: 1532 WVLHFHVNKEMILRKRINVQSIVDALAGNYNCF--REGRKLPRLFMTSQSCVLGNEQKNL 1359
WV HFH++KE + +R+ ++SI+DAL Y + G LP L +T + C + +K
Sbjct: 981 WVCHFHIDKENVKTRRLKLRSILDALNMRYRAATTKGGNDLPNLHITCKDCSVAEARKEK 1040
Query: 1358 EELCISVGAVESSERKEQDEPSPTLLDTIRDSVMPVLLQTLIKGFKEFKQVDILWDSQPK 1179
E+CI+V VE+S+ +PS +LLDT+RD V+P LL+T+IKGF FK+VDILW P
Sbjct: 1041 SEICITVSVVETSK-----DPS-SLLDTLRDVVIPFLLETVIKGFSAFKKVDILWKELPS 1094
Query: 1178 PD-------GQLFLKIIMEESCPPRKFWRTLQSACLPIMDMIDWERSRPDGAHDISDVFG 1020
P G+L+L++ M ESC KFW L +CL I D+IDWERS PD HD++ +G
Sbjct: 1095 PSKSSRGSTGELYLQVFMSESCDRIKFWNALVDSCLQIRDLIDWERSYPDDVHDLTVAYG 1154
Query: 1019 IISSYSYFLGSLKSAVSDIGRNIHLEHLLLVSDSLSVTGEFHGLSAKGIKQQRAHLSISS 840
I ++ YFL L SAVS+ G+ I EHL+L +DSL+ TGEF LSAKG+ QR + S
Sbjct: 1155 IDVAWEYFLCKLHSAVSETGKKILPEHLVLAADSLTATGEFVPLSAKGLTLQRKAAGVIS 1214
Query: 839 PFTQACFCNPEKCFIEAAKHSSTDHLYGTVDAVAWGQEAPVGTGGPFKIIYSGKVHSPKQ 660
PF QACF NP F+ AAK +D+L G+++++AWG+ +GTG F IIYSGK + P +
Sbjct: 1215 PFMQACFSNPGDSFVRAAKMGLSDNLQGSLESLAWGKTPSIGTGSSFDIIYSGKGYEPAE 1274
Query: 659 TENIYEILLKQKHDSSSQIPGADKWKGQPGVDNAGGSMRRWNEHNCTTKKEKNVVFSSQP 480
++Y +L Q H +S P + G + RR + + KK +S
Sbjct: 1275 PIDVYTLL--QNHVTSG-TPKVKVTLDEDGGMDGKSLARRLDRLDDLNKKSCKSEWSITK 1331
Query: 479 ASVRIGSWDNISAMSSSLSRMLHQYPVNHQLNEADKSLLMEALMYHPKK-DAXXXXXXXX 303
I S+++I +S SL +ML +Y ++ +LNEADK + M AL +HP++ +
Sbjct: 1332 LRSFI-SFNDIKKLSQSLKQMLSKYAIDRELNEADKCIAMMALQFHPRRNEKIGKGAPQE 1390
Query: 302 XXXGHSPFHPKSRCFILIRNDGTTEDFSYRKCVIEAANQISPE 174
G+ + SRCF+L+R+DG+ EDFSYRKC+ A I+P+
Sbjct: 1391 IKIGYHKEYEDSRCFMLVRSDGSVEDFSYRKCMQHALELIAPQ 1433
>ref|XP_010325436.1| PREDICTED: DNA-directed RNA polymerase IV subunit 1 isoform X2
[Solanum lycopersicum]
Length = 1307
Score = 384 bits (985), Expect = e-103
Identities = 216/524 (41%), Positives = 310/524 (59%), Gaps = 11/524 (2%)
Frame = -3
Query: 1712 RTASLALSNKLKRLNYGFEYGALAVKNHLDRVFFSDIVTSVMIFYSAHDAKGTKGMRLSP 1533
+TAS+ LS +L R +GFEYGAL VK HL+R+ S++V++VMI +S K T P
Sbjct: 785 KTASMFLSKRLGRWAHGFEYGALEVKGHLERLLLSEVVSTVMICFSPETRKSTHNC---P 841
Query: 1532 WVLHFHVNKEMILRKRINVQSIVDALAGNYNCF--REGRKLPRLFMTSQSCVLGNEQKNL 1359
WV HFH++KE + +R+ ++S++DAL Y + G LP L +T + C + QK
Sbjct: 842 WVCHFHIDKENVKTRRLKLRSVLDALNMRYRAATTKAGNDLPNLHITCKDCSVAEVQKEK 901
Query: 1358 EELCISVGAVESSERKEQDEPSPTLLDTIRDSVMPVLLQTLIKGFKEFKQVDILWDSQPK 1179
E+CI+V VE+S+ +PS +LLDT+RD V+P LL+T+IKGF FK+VDILW P
Sbjct: 902 SEICITVSVVETSK-----DPS-SLLDTLRDVVIPFLLETVIKGFSAFKKVDILWKELPS 955
Query: 1178 PD-------GQLFLKIIMEESCPPRKFWRTLQSACLPIMDMIDWERSRPDGAHDISDVFG 1020
P G+L+L++ M ESC KFW L +CL I D+IDWERS PD HD++ +G
Sbjct: 956 PSKSSRGPTGELYLQVFMSESCDRIKFWNALVDSCLQIRDLIDWERSYPDDVHDLTVAYG 1015
Query: 1019 IISSYSYFLGSLKSAVSDIGRNIHLEHLLLVSDSLSVTGEFHGLSAKGIKQQRAHLSISS 840
I ++ YFL L SAVS+ G+ I EHL+L +DSL+ TGEF LSAKG+ QR + S
Sbjct: 1016 IDVAWEYFLCKLHSAVSETGKKILPEHLVLAADSLTTTGEFVPLSAKGLTLQRKAAGVVS 1075
Query: 839 PFTQACFCNPEKCFIEAAKHSSTDHLYGTVDAVAWGQEAPVGTGGPFKIIYSGKVHSPKQ 660
PF QACF NP F+ AAK +D L G+++++AWG+ +GTG F I+YSGK + +
Sbjct: 1076 PFMQACFTNPGDSFVRAAKMGLSDDLQGSLESLAWGKTPSIGTGSSFDIMYSGKGYELAE 1135
Query: 659 TENIYEILLKQKHDSSSQIPGADKWKGQPGVDNAGGSMRRWNEHNCTTKKEKNVVFSSQP 480
N+Y +L ++ + P G+ G + +RR + + KK S
Sbjct: 1136 QINVYTLL---RNLVTVDTPNVKVTLGKDGGMDGMSLVRRLDRLDDLDKKSCKSELSFTK 1192
Query: 479 ASVRIGSWDNISAMSSSLSRMLHQYPVNHQLNEADKSLLMEALMYHPKKD--AXXXXXXX 306
S+++I +S SL +ML +Y + +LNEADK L M AL +HP+++
Sbjct: 1193 LRSYF-SFNDIKKLSQSLKQMLSKYDIGRELNEADKCLAMMALQFHPRRNEKIGKGAPKE 1251
Query: 305 XXXXGHSPFHPKSRCFILIRNDGTTEDFSYRKCVIEAANQISPE 174
H F SRCF+++R+D T EDFSYRKC+ A I+P+
Sbjct: 1252 IKIGYHQEFE-GSRCFMVVRSDDTVEDFSYRKCMQHALELIAPQ 1294