BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Ophiopogon21_contig00000027
         (2182 letters)

Database: ./nr 
           77,306,371 sequences; 28,104,191,420 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AGG13276.1| Replicase [Garlic virus A]                             252   1e-63
ref|YP_004659200.1| replication-associated polyprotein [Blackber...   249   7e-63
ref|NP_569126.1| replicase [Garlic virus A] gi|2826150|dbj|BAA61...   248   2e-62
gb|AGC09141.1| Replicase [Garlic virus A]                             248   2e-62
gb|AHB33487.1| replicase [Garlic virus A]                             248   2e-62
gb|AGC67029.1| replicase [Shallot virus X]                            243   7e-61
ref|NP_620648.1| replicase [Shallot virus X] gi|548840|sp|Q04575...   240   3e-60
gb|AHB87050.1| putative RNA replicase, partial [Escobaria virus]      237   3e-59
gb|AGG13258.1| Replicase [Garlic virus X]                             234   2e-58
gb|AFV61767.1| replicase [Garlic virus X]                             234   3e-58
emb|CAC83699.1| RNA-dependent RNA-polymerase [Garlic virus X]         234   3e-58
ref|NP_044571.1| replicase [Garlic virus X] gi|1888529|gb|AAC588...   234   3e-58
gb|AGG13306.1| Replicase [Garlic virus X]                             231   2e-57
ref|NP_659010.1| hypothetical protein GvEgp1 [Garlic virus E] gi...   231   2e-57
gb|AEV51816.1| replicase, partial [Garlic virus C]                    229   1e-56
gb|AGG13294.1| Replicase [Garlic virus C]                             228   1e-56
ref|NP_569132.1| replicase [Garlic virus C] gi|2826157|dbj|BAA61...   228   2e-56
gb|AGG13300.1| Replicase [Garlic virus C]                             228   2e-56
gb|ALK24278.1| replicase [Garlic virus D]                             226   5e-56
gb|AHA90833.1| replicase [Garlic virus D]                             226   5e-56

>gb|AGG13276.1| Replicase [Garlic virus A]
          Length = 1600

 Score =  252 bits (643), Expect = 1e-63
 Identities = 128/172 (74%), Positives = 137/172 (79%)
 Frame = -1

Query: 2182 AAHHIMLITRRQAQTPWPLAPLWVFHPSDYVRLPPVFYPPEANVQNTYPHDLVKRMQAYC 2003
            AAHHIMLI RR+AQ  WPL  LWVFH SDYV+LPP+FYPPEANVQ TYPH  VKRMQ YC
Sbjct: 257  AAHHIMLIQRRRAQVDWPLPTLWVFHASDYVKLPPIFYPPEANVQKTYPHVFVKRMQLYC 316

Query: 2002 FSVKAVSLRDIFAKLRQVIETAELKRYSMADLIRLANYLLLITGMEQVSDYECLLTKGWL 1823
            FSVKAVSLRDIFAKLRQVIET EL RYSMADLIRLANYLL ITGM Q+SDYE  L +   
Sbjct: 317  FSVKAVSLRDIFAKLRQVIETQELIRYSMADLIRLANYLLFITGMNQLSDYESPLLENLF 376

Query: 1822 AKLSCRIRTRVRQLFESLRGKTSYAALLSVTDVIPVPFTTNPCVRGCDGISW 1667
             KL   IR R+R  F++L GKTSYAALL+VTDVIPV FTTNP  R   G SW
Sbjct: 377  GKLCASIRMRLRTFFQNLLGKTSYAALLTVTDVIPVHFTTNPKRREAIGESW 428



 Score =  102 bits (254), Expect = 1e-18
 Identities = 60/123 (48%), Positives = 77/123 (62%), Gaps = 8/123 (6%)
 Frame = -1

Query: 346  TAYPHLTP---HQVDILVKHGFTNLKQQFSGTGAIEPIFENPRASNF-----SVAPPTSR 191
            +A P L P     +DIL  HGFT L+ Q  G   I+P++ N +         +   PT++
Sbjct: 675  SARPKLEPLDQETIDILKLHGFTALQPQHDGAEQIQPVYFNSKVKTHRRLEVNELCPTAQ 734

Query: 190  SQRTVTSMASSIYRQVYSYPIDNKRAAAYMSDVKNNLTGLVLPKLSRETLSAWVALCEHS 11
               T   +A+SI R VY+Y + NKRA AYMSDVKNNLTGLVLPKL RE LS+WVAL E +
Sbjct: 735  PFAT---LAASIRRGVYNYKLCNKRATAYMSDVKNNLTGLVLPKLDRELLSSWVALAERT 791

Query: 10   TRE 2
            TR+
Sbjct: 792  TRD 794


>ref|YP_004659200.1| replication-associated polyprotein [Blackberry virus E]
            gi|336139487|gb|AEI17897.1| replication-associated
            polyprotein [Blackberry virus E]
          Length = 1499

 Score =  249 bits (636), Expect = 7e-63
 Identities = 120/172 (69%), Positives = 139/172 (80%)
 Frame = -1

Query: 2182 AAHHIMLITRRQAQTPWPLAPLWVFHPSDYVRLPPVFYPPEANVQNTYPHDLVKRMQAYC 2003
            AAHH+MLI RR+A+ PWPL P+WVF  SDYVRLP +FYPPEANV+NTY    VKR+QAYC
Sbjct: 253  AAHHVMLIQRRRARVPWPLPPVWVFQASDYVRLPHIFYPPEANVRNTYQDVFVKRLQAYC 312

Query: 2002 FSVKAVSLRDIFAKLRQVIETAELKRYSMADLIRLANYLLLITGMEQVSDYECLLTKGWL 1823
            FSVKAVSLRDIFAK+RQV+ET EL+RYSMADLIRLAN+LL  T M+QV DY+  LTKG+L
Sbjct: 313  FSVKAVSLRDIFAKIRQVVETQELRRYSMADLIRLANFLLFTTAMQQVCDYQSFLTKGFL 372

Query: 1822 AKLSCRIRTRVRQLFESLRGKTSYAALLSVTDVIPVPFTTNPCVRGCDGISW 1667
            A+LS RI+ R+R L E L G++SYAALLSV D IPVPFTT P  R   G  W
Sbjct: 373  ARLSARIQARIRSLTEGLMGQSSYAALLSVADTIPVPFTTKPISRPAQGEDW 424



 Score =  133 bits (334), Expect = 8e-28
 Identities = 79/148 (53%), Positives = 92/148 (62%), Gaps = 2/148 (1%)
 Frame = -1

Query: 442  GRTNSTAAVPKAPPSRTCEAAHRPKPDTSHVATAYPHLTPHQ-VDILVKHGFTNLKQQFS 266
            G TNSTA V           A R  PD    A A  H  P + VDIL  HGFTNL QQFS
Sbjct: 594  GTTNSTAQVQ----------APRAGPDPK--ANAEAHTLPKRTVDILRLHGFTNLNQQFS 641

Query: 265  GTGAIEPIFENPRASNFSVAPPT-SRSQRTVTSMASSIYRQVYSYPIDNKRAAAYMSDVK 89
              GAI+P+  N  A+N  +APP  S+  + + +MA  + R+ YSY +DNKRA AYMSDVK
Sbjct: 642  DVGAIQPVIYNTNAANLKLAPPPLSKLNKVLDTMAQKLQRRFYSYVLDNKRATAYMSDVK 701

Query: 88   NNLTGLVLPKLSRETLSAWVALCEHSTR 5
            NNLTGLVLPKL R  LSAWV+L E S R
Sbjct: 702  NNLTGLVLPKLDRNILSAWVSLAECSKR 729


>ref|NP_569126.1| replicase [Garlic virus A] gi|2826150|dbj|BAA61806.1| replicase
            [Garlic virus A]
          Length = 1625

 Score =  248 bits (633), Expect = 2e-62
 Identities = 126/172 (73%), Positives = 135/172 (78%)
 Frame = -1

Query: 2182 AAHHIMLITRRQAQTPWPLAPLWVFHPSDYVRLPPVFYPPEANVQNTYPHDLVKRMQAYC 2003
            AAHHIMLI RR+ Q  WPL  LWVFH SDYV+LPP+FYPPEANVQ TYPH  VKRMQ YC
Sbjct: 257  AAHHIMLIQRRRVQVDWPLPTLWVFHASDYVKLPPIFYPPEANVQKTYPHVFVKRMQLYC 316

Query: 2002 FSVKAVSLRDIFAKLRQVIETAELKRYSMADLIRLANYLLLITGMEQVSDYECLLTKGWL 1823
            FSVKAVSLRDIFAKLRQVIET EL RYSMADLIRLANYLL ITGM Q+SDYE  L +   
Sbjct: 317  FSVKAVSLRDIFAKLRQVIETQELIRYSMADLIRLANYLLFITGMNQLSDYESPLLENLF 376

Query: 1822 AKLSCRIRTRVRQLFESLRGKTSYAALLSVTDVIPVPFTTNPCVRGCDGISW 1667
             KL   IR R+R  F++L GKTSYAALL+VTDVIPV FTT P  R   G SW
Sbjct: 377  GKLCASIRMRLRTFFQNLLGKTSYAALLTVTDVIPVHFTTTPKRREAVGESW 428



 Score =  108 bits (270), Expect = 2e-20
 Identities = 58/124 (46%), Positives = 79/124 (63%), Gaps = 5/124 (4%)
 Frame = -1

Query: 358  SHVATAYPHLTPHQ---VDILVKHGFTNLKQQFSGTGAIEPIFENPRASNFSV--APPTS 194
            +HV    P L P     +DIL  HGFT L+ Q  GT  I+P++ N +        A    
Sbjct: 701  NHVRPTRPRLEPLDQATIDILKLHGFTALQPQHDGTDQIQPVYFNDKVKYHRQLEAKDLC 760

Query: 193  RSQRTVTSMASSIYRQVYSYPIDNKRAAAYMSDVKNNLTGLVLPKLSRETLSAWVALCEH 14
             + +   ++A+S++R +Y+Y I+NKRA AYMSDVKNNLTGLVLPKL R+ LS+WVAL E 
Sbjct: 761  ATAKPFITLATSLHRGIYNYRINNKRATAYMSDVKNNLTGLVLPKLDRDLLSSWVALAER 820

Query: 13   STRE 2
            +TR+
Sbjct: 821  TTRD 824


>gb|AGC09141.1| Replicase [Garlic virus A]
          Length = 1604

 Score =  248 bits (633), Expect = 2e-62
 Identities = 126/172 (73%), Positives = 135/172 (78%)
 Frame = -1

Query: 2182 AAHHIMLITRRQAQTPWPLAPLWVFHPSDYVRLPPVFYPPEANVQNTYPHDLVKRMQAYC 2003
            AAHHIMLI RR+ Q  WPL  LWVFH SDYV+LPP+FYPPEANVQ TYPH  VKRMQ YC
Sbjct: 257  AAHHIMLIQRRRVQVDWPLPTLWVFHASDYVKLPPIFYPPEANVQKTYPHVFVKRMQLYC 316

Query: 2002 FSVKAVSLRDIFAKLRQVIETAELKRYSMADLIRLANYLLLITGMEQVSDYECLLTKGWL 1823
            FSVKAVSLRDIFAKLRQVIET EL RYSMADLIRLANYLL ITGM Q+SDYE  L +   
Sbjct: 317  FSVKAVSLRDIFAKLRQVIETQELIRYSMADLIRLANYLLFITGMNQLSDYESPLLENLF 376

Query: 1822 AKLSCRIRTRVRQLFESLRGKTSYAALLSVTDVIPVPFTTNPCVRGCDGISW 1667
             KL   IR R+R  F++L GKTSYAALL+VTDVIPV FTT P  R   G SW
Sbjct: 377  GKLCASIRMRLRTFFQNLLGKTSYAALLTVTDVIPVHFTTTPRRREAVGESW 428



 Score =  107 bits (267), Expect = 4e-20
 Identities = 59/119 (49%), Positives = 76/119 (63%), Gaps = 5/119 (4%)
 Frame = -1

Query: 343  AYPHLTPHQ---VDILVKHGFTNLKQQFSGTGAIEPIFENPRASNFSV--APPTSRSQRT 179
            A P L P     VDIL  HGFT L+ Q  G   I+P++ N +        A     + + 
Sbjct: 685  ARPRLEPLDHATVDILKLHGFTALQPQHDGADQIQPVYFNDKVKRHRQLEAKDLCATAKP 744

Query: 178  VTSMASSIYRQVYSYPIDNKRAAAYMSDVKNNLTGLVLPKLSRETLSAWVALCEHSTRE 2
              ++A+S++R VY+Y I+NKRA AYMSDVKNNLTGLVLPKL R+ LS+WVAL E +TRE
Sbjct: 745  FVTLAASLHRGVYNYKINNKRATAYMSDVKNNLTGLVLPKLDRDLLSSWVALAERTTRE 803


>gb|AHB33487.1| replicase [Garlic virus A]
          Length = 1612

 Score =  248 bits (632), Expect = 2e-62
 Identities = 125/172 (72%), Positives = 135/172 (78%)
 Frame = -1

Query: 2182 AAHHIMLITRRQAQTPWPLAPLWVFHPSDYVRLPPVFYPPEANVQNTYPHDLVKRMQAYC 2003
            AAHHIMLI RR+ Q  WPL  LWVFH SDYV+LPP+FYPPEANVQ TYPH  +KRMQ YC
Sbjct: 257  AAHHIMLIQRRRVQVDWPLPTLWVFHASDYVKLPPIFYPPEANVQKTYPHVFIKRMQLYC 316

Query: 2002 FSVKAVSLRDIFAKLRQVIETAELKRYSMADLIRLANYLLLITGMEQVSDYECLLTKGWL 1823
            FSVKAVSLRDIFAKLRQVIET EL RYSMADLIRLANYLL ITGM Q+SDYE  L +   
Sbjct: 317  FSVKAVSLRDIFAKLRQVIETQELIRYSMADLIRLANYLLFITGMNQLSDYESPLLENLF 376

Query: 1822 AKLSCRIRTRVRQLFESLRGKTSYAALLSVTDVIPVPFTTNPCVRGCDGISW 1667
             KL   IR R+R  F++L GKTSYAALL+VTDVIPV FTT P  R   G SW
Sbjct: 377  GKLCASIRMRLRTFFQNLLGKTSYAALLTVTDVIPVHFTTTPRRREAIGESW 428



 Score =  106 bits (265), Expect = 8e-20
 Identities = 60/127 (47%), Positives = 79/127 (62%), Gaps = 6/127 (4%)
 Frame = -1

Query: 364  DTSHVATAYPHLTPHQ---VDILVKHGFTNLKQQFSGTGAIEPIFENPRAS---NFSVAP 203
            +  H   A P L P     +DIL  HGFT L+ Q  GT  I+P++ N +           
Sbjct: 686  ENDHKQAARPKLEPLDQATIDILKLHGFTALQPQHDGTDQIQPVYFNEKIKCHRRLETKD 745

Query: 202  PTSRSQRTVTSMASSIYRQVYSYPIDNKRAAAYMSDVKNNLTGLVLPKLSRETLSAWVAL 23
              S +   +T +A+S++R VY+Y I+NKRA AYMSDVKNNLTGLVLPKL R+ LS+WVAL
Sbjct: 746  LCSTASPFIT-LAASLHRGVYNYRINNKRATAYMSDVKNNLTGLVLPKLDRDLLSSWVAL 804

Query: 22   CEHSTRE 2
             E +TR+
Sbjct: 805  AERTTRD 811


>gb|AGC67029.1| replicase [Shallot virus X]
          Length = 1719

 Score =  243 bits (619), Expect = 7e-61
 Identities = 121/172 (70%), Positives = 134/172 (77%)
 Frame = -1

Query: 2182 AAHHIMLITRRQAQTPWPLAPLWVFHPSDYVRLPPVFYPPEANVQNTYPHDLVKRMQAYC 2003
            AAHHIM I RR+AQ  WPL P+WV+H S+YV+LP +FYPPEANVQ TYPH L+KRMQ YC
Sbjct: 257  AAHHIMFIQRRRAQVDWPLPPIWVYHASEYVKLPLIFYPPEANVQKTYPHTLIKRMQLYC 316

Query: 2002 FSVKAVSLRDIFAKLRQVIETAELKRYSMADLIRLANYLLLITGMEQVSDYECLLTKGWL 1823
            FSVKAVSLRDIFAKLRQVIET EL RYSMADLIRLANY L ITGM QVSDYE  L +   
Sbjct: 317  FSVKAVSLRDIFAKLRQVIETQELVRYSMADLIRLANYFLFITGMNQVSDYESPLLENLF 376

Query: 1822 AKLSCRIRTRVRQLFESLRGKTSYAALLSVTDVIPVPFTTNPCVRGCDGISW 1667
             K+   IR R+R  F++L GKTSYAALL+VTDVIPV FTT P  R   G  W
Sbjct: 377  GKMCASIRMRLRTFFQNLLGKTSYAALLTVTDVIPVHFTTQPKRREAVGELW 428



 Score =  112 bits (281), Expect = 1e-21
 Identities = 69/157 (43%), Positives = 94/157 (59%), Gaps = 11/157 (7%)
 Frame = -1

Query: 439  RTNSTAAVPK-APPSRTCEAAHRP-KPDTSHVATAYPHLTPHQ---VDILVKHGFTNLKQ 275
            + N   A PK + PS T    H+  +P  S+  ++ P+L P     V+IL  HGFT L  
Sbjct: 755  KLNQNNACPKPSDPSNTSGKQHKKTRPAKSNEKSSSPNLEPLDAPTVEILKLHGFTALTP 814

Query: 274  QFSGTGAIEPIFENP------RASNFSVAPPTSRSQRTVTSMASSIYRQVYSYPIDNKRA 113
            Q  GT  I P++ N       +A    ++PP     R    +A+S++R +Y++ IDN+RA
Sbjct: 815  QHDGTCQIRPVYFNKDIHLRRKAVKTDMSPPA----RPFFDLATSLHRGIYTHKIDNRRA 870

Query: 112  AAYMSDVKNNLTGLVLPKLSRETLSAWVALCEHSTRE 2
             AYMSDVKNNLTGLVLPKL R+ LS+WVAL E +TRE
Sbjct: 871  TAYMSDVKNNLTGLVLPKLDRDLLSSWVALAETTTRE 907


>ref|NP_620648.1| replicase [Shallot virus X] gi|548840|sp|Q04575.1|RDRP_SHVX RecName:
            Full=RNA replication protein; AltName: Full=194 kDa
            protein; Includes: RecName: Full=RNA-directed RNA
            polymerase; Includes: RecName: Full=Helicase
            gi|295079|gb|AAA47787.1| replicase [Shallot virus X]
          Length = 1718

 Score =  240 bits (613), Expect = 3e-60
 Identities = 120/172 (69%), Positives = 133/172 (77%)
 Frame = -1

Query: 2182 AAHHIMLITRRQAQTPWPLAPLWVFHPSDYVRLPPVFYPPEANVQNTYPHDLVKRMQAYC 2003
            AAHHIM I R +AQ  WPL P+WV+H S+YV+LP +FYPPEANVQ TYPH L+KRMQ YC
Sbjct: 257  AAHHIMFIQRTRAQVDWPLPPIWVYHASEYVKLPLIFYPPEANVQKTYPHTLIKRMQLYC 316

Query: 2002 FSVKAVSLRDIFAKLRQVIETAELKRYSMADLIRLANYLLLITGMEQVSDYECLLTKGWL 1823
            FSVKAVSLRDIFAKLRQVIET EL RYSMADLIRLANY L ITGM QVSDYE  L +   
Sbjct: 317  FSVKAVSLRDIFAKLRQVIETQELVRYSMADLIRLANYFLFITGMNQVSDYESPLLENLF 376

Query: 1822 AKLSCRIRTRVRQLFESLRGKTSYAALLSVTDVIPVPFTTNPCVRGCDGISW 1667
             K+   IR R+R  F++L GKTSYAALL+VTDVIPV FTT P  R   G  W
Sbjct: 377  GKMCASIRMRLRTFFQNLLGKTSYAALLTVTDVIPVHFTTQPKRREAVGELW 428



 Score =  108 bits (269), Expect = 3e-20
 Identities = 63/153 (41%), Positives = 89/153 (58%), Gaps = 9/153 (5%)
 Frame = -1

Query: 433  NSTAAVPKAPPSRTCEAAHRPKPDTSHVATAYPHLTPHQ---VDILVKHGFTNLKQQFSG 263
            N+    P  P + + +   +  P   +  ++ P+L P     V+IL  HGFT L  Q  G
Sbjct: 759  NNACPKPSDPSNASGKQHKKTHPAKGNEKSSSPNLEPLDAPTVEILKLHGFTALTPQHDG 818

Query: 262  TGAIEPIFENP------RASNFSVAPPTSRSQRTVTSMASSIYRQVYSYPIDNKRAAAYM 101
            T  I P++ N       +A    ++PP     R    +A+S++R +Y++ IDN+RA AYM
Sbjct: 819  TCQIRPVYFNKDIHLRRKAVKTDMSPPA----RPFFDLATSLHRGIYTHKIDNRRATAYM 874

Query: 100  SDVKNNLTGLVLPKLSRETLSAWVALCEHSTRE 2
            SDVKNNLTGLVLPKL R+ LS+WVAL E +TRE
Sbjct: 875  SDVKNNLTGLVLPKLDRDLLSSWVALAETTTRE 907


>gb|AHB87050.1| putative RNA replicase, partial [Escobaria virus]
          Length = 689

 Score =  237 bits (605), Expect = 3e-59
 Identities = 117/172 (68%), Positives = 134/172 (77%)
 Frame = -1

Query: 2182 AAHHIMLITRRQAQTPWPLAPLWVFHPSDYVRLPPVFYPPEANVQNTYPHDLVKRMQAYC 2003
            AAHH+MLI RR+ Q  WP    W+F  SDYVRLP +FYPPEANVQN   H  +KRMQ YC
Sbjct: 239  AAHHVMLIQRRRKQVRWPTPTRWIFQASDYVRLPHIFYPPEANVQNYILHTFIKRMQLYC 298

Query: 2002 FSVKAVSLRDIFAKLRQVIETAELKRYSMADLIRLANYLLLITGMEQVSDYECLLTKGWL 1823
            FSVKAVSLRDIFAKLRQVIET +L +++ ADLIRLANYLL  TGM+QVSDYE  LTKG+L
Sbjct: 299  FSVKAVSLRDIFAKLRQVIETRDLTKFNTADLIRLANYLLFTTGMQQVSDYESFLTKGFL 358

Query: 1822 AKLSCRIRTRVRQLFESLRGKTSYAALLSVTDVIPVPFTTNPCVRGCDGISW 1667
            A+LS RIR R RQL   L+G+TSYAALL VT+ IPVPFTT P  R  +G +W
Sbjct: 359  ARLSARIRARFRQLLSGLKGETSYAALLGVTEPIPVPFTTKPKWRIAEGETW 410


>gb|AGG13258.1| Replicase [Garlic virus X]
          Length = 1544

 Score =  234 bits (598), Expect = 2e-58
 Identities = 116/171 (67%), Positives = 131/171 (76%)
 Frame = -1

Query: 2179 AHHIMLITRRQAQTPWPLAPLWVFHPSDYVRLPPVFYPPEANVQNTYPHDLVKRMQAYCF 2000
            AHHIMLI RR+ + PWPL PLWVFH SDYVRLP +FYP EANVQ  YPH  +KR+Q YCF
Sbjct: 244  AHHIMLIQRRRPELPWPLPPLWVFHASDYVRLPEIFYPSEANVQRAYPHTFIKRLQLYCF 303

Query: 1999 SVKAVSLRDIFAKLRQVIETAELKRYSMADLIRLANYLLLITGMEQVSDYECLLTKGWLA 1820
            SVKAVSLRDIFAK+RQVI T EL R+S ADLIRLANYLL ITGM+Q SDY+  L +  L 
Sbjct: 304  SVKAVSLRDIFAKIRQVIPTEELSRFSTADLIRLANYLLFITGMQQTSDYQSPLMESLLG 363

Query: 1819 KLSCRIRTRVRQLFESLRGKTSYAALLSVTDVIPVPFTTNPCVRGCDGISW 1667
            KL   IR RVR+ F++L GK+SYAALL+VTDV PV FTT P  R   G  W
Sbjct: 364  KLCLSIRARVREFFQNLMGKSSYAALLTVTDVRPVYFTTKPIRRPICGQPW 414



 Score = 97.1 bits (240), Expect = 6e-17
 Identities = 64/162 (39%), Positives = 86/162 (53%), Gaps = 11/162 (6%)
 Frame = -1

Query: 454  EETFGRTNSTAAVPKAPPSRTCEAAHRPKPDTSHVA-------TAYPHLTP---HQVDIL 305
            E+     N   A+ +A    T   A   KP T  V        T+   LTP     V+IL
Sbjct: 579  EQGDAEDNENPAIHQANLCNTTCDAETDKPATIPVEMESSPKITSRVDLTPLDSDTVEIL 638

Query: 304  VKHGFTNLKQQFSGTGAIEPIFENPRASNFSVAPPTSRS-QRTVTSMASSIYRQVYSYPI 128
              HGFTN K Q  G   I P+F N +A    +    + S Q     MA ++ R  Y+Y +
Sbjct: 639  RLHGFTNYKPQHDGDFQIAPVFYNHQACQLPLYDGITNSVQSKFIEMAHALKRNCYNYTL 698

Query: 127  DNKRAAAYMSDVKNNLTGLVLPKLSRETLSAWVALCEHSTRE 2
            + +RA A+MSDVKNNLTGLVLPKL R+ L++WVAL E++ R+
Sbjct: 699  EPRRATAFMSDVKNNLTGLVLPKLDRDLLTSWVALSENACRK 740


>gb|AFV61767.1| replicase [Garlic virus X]
          Length = 1544

 Score =  234 bits (596), Expect = 3e-58
 Identities = 116/171 (67%), Positives = 131/171 (76%)
 Frame = -1

Query: 2179 AHHIMLITRRQAQTPWPLAPLWVFHPSDYVRLPPVFYPPEANVQNTYPHDLVKRMQAYCF 2000
            AHHIMLI RR+ + PWPL PLWVFH SDYVRLP +FYP EANVQ  YPH  +KR+Q YCF
Sbjct: 244  AHHIMLIQRRRPELPWPLPPLWVFHASDYVRLPEIFYPSEANVQRAYPHIFIKRLQLYCF 303

Query: 1999 SVKAVSLRDIFAKLRQVIETAELKRYSMADLIRLANYLLLITGMEQVSDYECLLTKGWLA 1820
            SVKAVSLRDIFAK+RQVI T EL R+S ADLIRLANYLL ITGM+Q SDY+  L +  L 
Sbjct: 304  SVKAVSLRDIFAKIRQVIPTEELSRFSTADLIRLANYLLFITGMQQTSDYQSPLMESLLG 363

Query: 1819 KLSCRIRTRVRQLFESLRGKTSYAALLSVTDVIPVPFTTNPCVRGCDGISW 1667
            KL   IR RVR+ F++L GK+SYAALL+VTDV PV FTT P  R   G  W
Sbjct: 364  KLCLSIRARVREFFQNLMGKSSYAALLTVTDVRPVYFTTKPIRRPICGQPW 414



 Score =  100 bits (249), Expect = 5e-18
 Identities = 65/162 (40%), Positives = 86/162 (53%), Gaps = 11/162 (6%)
 Frame = -1

Query: 454  EETFGRTNSTAAVPKAPPSRTCEAAHRPKPDTSHVA-------TAYPHLTP---HQVDIL 305
            E+     N  +A  +A    T       KP T+ V        T+   LTP     V+IL
Sbjct: 579  EQGDAEDNEDSANDQADHCNTTHDTETDKPATTPVEVESSPKITSRVDLTPLDSDTVEIL 638

Query: 304  VKHGFTNLKQQFSGTGAIEPIFENPRASNFSVAPPTSRS-QRTVTSMASSIYRQVYSYPI 128
              HGFTN K Q  G   I P+F N +A    +    + S Q     MA ++ R  Y+Y +
Sbjct: 639  KLHGFTNYKPQHDGDFQIAPVFYNHQACQLPLYDGITNSVQSKFIEMAHALKRNCYNYTL 698

Query: 127  DNKRAAAYMSDVKNNLTGLVLPKLSRETLSAWVALCEHSTRE 2
            D KRA A+MSDVKNNLTGLVLPKL R+ L++WVAL E++ R+
Sbjct: 699  DAKRATAFMSDVKNNLTGLVLPKLDRDLLTSWVALSENACRK 740


>emb|CAC83699.1| RNA-dependent RNA-polymerase [Garlic virus X]
          Length = 1544

 Score =  234 bits (596), Expect = 3e-58
 Identities = 116/171 (67%), Positives = 131/171 (76%)
 Frame = -1

Query: 2179 AHHIMLITRRQAQTPWPLAPLWVFHPSDYVRLPPVFYPPEANVQNTYPHDLVKRMQAYCF 2000
            AHHIMLI RR+ + PWPL PLWVFH SDYVRLP +FYP EANVQ  YPH  +KR+Q YCF
Sbjct: 244  AHHIMLIQRRRPELPWPLPPLWVFHASDYVRLPEIFYPSEANVQRAYPHIFIKRLQLYCF 303

Query: 1999 SVKAVSLRDIFAKLRQVIETAELKRYSMADLIRLANYLLLITGMEQVSDYECLLTKGWLA 1820
            SVKAVSLRDIFAK+RQVI T EL R+S ADLIRLANYLL ITGM+Q SDY+  L +  L 
Sbjct: 304  SVKAVSLRDIFAKIRQVIPTEELSRFSTADLIRLANYLLFITGMQQTSDYQSPLMESLLG 363

Query: 1819 KLSCRIRTRVRQLFESLRGKTSYAALLSVTDVIPVPFTTNPCVRGCDGISW 1667
            KL   IR RVR+ F++L GK+SYAALL+VTDV PV FTT P  R   G  W
Sbjct: 364  KLCLSIRARVREFFQNLMGKSSYAALLTVTDVRPVYFTTKPIRRPICGQPW 414



 Score = 99.8 bits (247), Expect = 9e-18
 Identities = 65/162 (40%), Positives = 86/162 (53%), Gaps = 11/162 (6%)
 Frame = -1

Query: 454  EETFGRTNSTAAVPKAPPSRTCEAAHRPKPDTSHVA-------TAYPHLTP---HQVDIL 305
            E+     N   A  +A    T   A   KP T+ V        T+   LTP     V+IL
Sbjct: 579  EQGDAEDNEDPANDQADHCNTTHDAETDKPATTPVEVESSPKITSRVDLTPLDSDTVEIL 638

Query: 304  VKHGFTNLKQQFSGTGAIEPIFENPRASNFSVAPPTSRS-QRTVTSMASSIYRQVYSYPI 128
              HGFTN K Q  G   I P+F N +A    +    + S Q     MA ++ R  Y+Y +
Sbjct: 639  RLHGFTNYKPQHDGDFQIAPVFYNHQACQLPLYDGITNSVQSKFIEMAHALKRNCYNYTL 698

Query: 127  DNKRAAAYMSDVKNNLTGLVLPKLSRETLSAWVALCEHSTRE 2
            D +RA A+MSDVKNNLTGLVLPKL R+ L++WVAL E++ R+
Sbjct: 699  DARRATAFMSDVKNNLTGLVLPKLDRDLLTSWVALSENACRK 740


>ref|NP_044571.1| replicase [Garlic virus X] gi|1888529|gb|AAC58809.1| replicase
            [Garlic virus X]
          Length = 1543

 Score =  234 bits (596), Expect = 3e-58
 Identities = 116/172 (67%), Positives = 132/172 (76%)
 Frame = -1

Query: 2182 AAHHIMLITRRQAQTPWPLAPLWVFHPSDYVRLPPVFYPPEANVQNTYPHDLVKRMQAYC 2003
            AAHHIMLI RR+ + PWPL PLWVFH SDYVRLP +FYP EANVQ  YPH  +KR+Q YC
Sbjct: 243  AAHHIMLIQRRRPELPWPLPPLWVFHASDYVRLPEIFYPSEANVQRAYPHVFIKRLQLYC 302

Query: 2002 FSVKAVSLRDIFAKLRQVIETAELKRYSMADLIRLANYLLLITGMEQVSDYECLLTKGWL 1823
            FSVKAVSLRDIFAK+RQVI T +L R+S ADLIRLANYLL ITGM+Q SDY+  L +  L
Sbjct: 303  FSVKAVSLRDIFAKIRQVIPTEDLSRFSTADLIRLANYLLFITGMQQTSDYQSPLMESLL 362

Query: 1822 AKLSCRIRTRVRQLFESLRGKTSYAALLSVTDVIPVPFTTNPCVRGCDGISW 1667
             KL   IR RVR+ F++L GK+SYAALL+VTDV PV FTT P  R   G  W
Sbjct: 363  GKLCLSIRARVREFFQNLLGKSSYAALLTVTDVRPVYFTTKPIRRPICGQPW 414



 Score = 98.2 bits (243), Expect = 3e-17
 Identities = 60/141 (42%), Positives = 81/141 (57%), Gaps = 10/141 (7%)
 Frame = -1

Query: 394  TCEAAHRPKPDTSHVATAYPH------LTP---HQVDILVKHGFTNLKQQFSGTGAIEPI 242
            TC+A       T   A + P       LTP     V+IL  HGFTN K Q  G   I P+
Sbjct: 600  TCDAETDKSAQTPAEAKSSPKSASRVDLTPLDSDTVEILRLHGFTNYKPQHDGDFQIAPV 659

Query: 241  FENPRASNFSVAPP-TSRSQRTVTSMASSIYRQVYSYPIDNKRAAAYMSDVKNNLTGLVL 65
            F N +A N  +    T+ +Q     MA ++ R  Y+Y ++ +RA A+MSDVKNNLTGLVL
Sbjct: 660  FYNHQACNLPLYDGITNSAQSKFIEMAHALKRNCYNYILEPRRATAFMSDVKNNLTGLVL 719

Query: 64   PKLSRETLSAWVALCEHSTRE 2
            PKL R+ L++WVAL E++ R+
Sbjct: 720  PKLDRDLLTSWVALSENACRK 740


>gb|AGG13306.1| Replicase [Garlic virus X]
          Length = 1543

 Score =  231 bits (590), Expect = 2e-57
 Identities = 112/172 (65%), Positives = 130/172 (75%)
 Frame = -1

Query: 2182 AAHHIMLITRRQAQTPWPLAPLWVFHPSDYVRLPPVFYPPEANVQNTYPHDLVKRMQAYC 2003
            AAHHI+LI RR+ ++PWPL PLWVFH SDYVRLP +FYP EANVQ  YPH  +KR+Q YC
Sbjct: 243  AAHHIVLIQRRRQESPWPLPPLWVFHASDYVRLPEIFYPSEANVQKAYPHTFIKRLQLYC 302

Query: 2002 FSVKAVSLRDIFAKLRQVIETAELKRYSMADLIRLANYLLLITGMEQVSDYECLLTKGWL 1823
            FSVKAVSLRDIFAK+RQVI T EL ++S ADLIRLANYLL ITGM+Q SDY+  L +   
Sbjct: 303  FSVKAVSLRDIFAKIRQVIPTEELAKFSTADLIRLANYLLFITGMQQTSDYQSPLMESLF 362

Query: 1822 AKLSCRIRTRVRQLFESLRGKTSYAALLSVTDVIPVPFTTNPCVRGCDGISW 1667
             KL   +R R+R  F+ L GK+SYAALL+VTDV PV FTT P  R   G  W
Sbjct: 363  GKLCLSVRARIRSFFQDLMGKSSYAALLTVTDVRPVYFTTKPVRRPISGEPW 414



 Score =  101 bits (251), Expect = 3e-18
 Identities = 61/138 (44%), Positives = 78/138 (56%), Gaps = 4/138 (2%)
 Frame = -1

Query: 403  PSRTCEAAHRPKPDTSHVATAYPHLTPHQVDILVKHGFTNLKQQFSGTGAIEPIFENPRA 224
            P  T          TS V      L    V+IL  HGFTN K Q  G   I P+F N +A
Sbjct: 607  PGETANELESASKTTSRVELV--PLDSETVEILKLHGFTNHKPQHDGDFQISPVFYNRQA 664

Query: 223  SNFSVAPP----TSRSQRTVTSMASSIYRQVYSYPIDNKRAAAYMSDVKNNLTGLVLPKL 56
            +   + PP    T+  Q +   MA ++ R  YSY +D KRA A+MSDVKNNLTGLVLPKL
Sbjct: 665  N---LLPPYDGITNSVQSSFIQMAQALKRNCYSYKLDAKRATAFMSDVKNNLTGLVLPKL 721

Query: 55   SRETLSAWVALCEHSTRE 2
             R+ L++WVAL E++ R+
Sbjct: 722  DRDLLTSWVALSENAHRK 739


>ref|NP_659010.1| hypothetical protein GvEgp1 [Garlic virus E]
            gi|18621091|emb|CAC83705.1| hypothetical protein [Garlic
            virus E]
          Length = 1557

 Score =  231 bits (589), Expect = 2e-57
 Identities = 111/172 (64%), Positives = 132/172 (76%)
 Frame = -1

Query: 2182 AAHHIMLITRRQAQTPWPLAPLWVFHPSDYVRLPPVFYPPEANVQNTYPHDLVKRMQAYC 2003
            AAHHI++I RR+ + PWPL P+WVFH SDYV+LP +FYP EANVQ  YPH  +KR+Q YC
Sbjct: 258  AAHHIVMIQRRRPELPWPLPPIWVFHASDYVKLPEIFYPAEANVQKAYPHTFIKRLQLYC 317

Query: 2002 FSVKAVSLRDIFAKLRQVIETAELKRYSMADLIRLANYLLLITGMEQVSDYECLLTKGWL 1823
            FSVKAVSLRDIFAK+RQVI T EL R+S ADLIRLANYLL ITGM+  SDY+  L +  L
Sbjct: 318  FSVKAVSLRDIFAKIRQVIPTEELARFSTADLIRLANYLLFITGMQSASDYQSPLMESLL 377

Query: 1822 AKLSCRIRTRVRQLFESLRGKTSYAALLSVTDVIPVPFTTNPCVRGCDGISW 1667
             KL   IR RVR+ F+++ GK+SYAALL+VTDV P+ FTT P  RG  G  W
Sbjct: 378  GKLCLSIRARVREFFQNILGKSSYAALLTVTDVRPIHFTTKPQRRGICGEQW 429



 Score =  107 bits (267), Expect = 4e-20
 Identities = 57/129 (44%), Positives = 74/129 (57%), Gaps = 1/129 (0%)
 Frame = -1

Query: 388  EAAHRPKPDTSHVATAYPHLTPHQVDILVKHGFTNLKQQFSGTGAIEPIFENPRASNF-S 212
            E   R +P           L    V++L  HGFTN + Q+ G   I+PI+ NP A     
Sbjct: 623  EPEERGQPSKQTCKVELTPLDADTVELLKLHGFTNYRAQYDGESQIQPIYRNPHAHFLRQ 682

Query: 211  VAPPTSRSQRTVTSMASSIYRQVYSYPIDNKRAAAYMSDVKNNLTGLVLPKLSRETLSAW 32
                T+  Q+    MA  + R+ Y Y +D KRA A+MSDVKNNLTGLVLPKL R+ LS+W
Sbjct: 683  YDAQTTTHQQQFVDMAHGLKRRCYGYKVDAKRATAFMSDVKNNLTGLVLPKLDRDLLSSW 742

Query: 31   VALCEHSTR 5
            VAL E++TR
Sbjct: 743  VALAENATR 751


>gb|AEV51816.1| replicase, partial [Garlic virus C]
          Length = 1352

 Score =  229 bits (583), Expect = 1e-56
 Identities = 111/172 (64%), Positives = 131/172 (76%)
 Frame = -1

Query: 2182 AAHHIMLITRRQAQTPWPLAPLWVFHPSDYVRLPPVFYPPEANVQNTYPHDLVKRMQAYC 2003
            AAHHI++I RR+ + PWPL P+WVFH SDYVRLP +FYP EANVQ  YPH  +KR+Q YC
Sbjct: 66   AAHHIVVIQRRRPELPWPLPPVWVFHASDYVRLPEIFYPKEANVQRPYPHVFIKRLQLYC 125

Query: 2002 FSVKAVSLRDIFAKLRQVIETAELKRYSMADLIRLANYLLLITGMEQVSDYECLLTKGWL 1823
            FSVKAVSLRDIFAK+RQV+ T EL R+S ADLIRLANYLL ITGM+Q SDY+  L +  L
Sbjct: 126  FSVKAVSLRDIFAKIRQVLPTEELARFSTADLIRLANYLLFITGMQQTSDYQSPLMESLL 185

Query: 1822 AKLSCRIRTRVRQLFESLRGKTSYAALLSVTDVIPVPFTTNPCVRGCDGISW 1667
             K+   IR R+R+ F+ L GK+SYAALL+VTDV PV FTT P  R   G  W
Sbjct: 186  GKICLSIRARIREFFQDLMGKSSYAALLTVTDVRPVYFTTKPVRRPVCGEQW 237



 Score = 95.9 bits (237), Expect = 1e-16
 Identities = 53/110 (48%), Positives = 68/110 (61%), Gaps = 1/110 (0%)
 Frame = -1

Query: 331 LTPHQVDILVKHGFTNLKQQFSGTGAIEPIFENPRASNFSVAPP-TSRSQRTVTSMASSI 155
           L    V+IL  HGFTNLK Q  G   I P+F N +A +        + +Q     MA ++
Sbjct: 440 LDEETVEILKIHGFTNLKPQHDGQFQISPVFYNRQARHLPHYDGIVTTTQSHFIDMARAL 499

Query: 154 YRQVYSYPIDNKRAAAYMSDVKNNLTGLVLPKLSRETLSAWVALCEHSTR 5
            R  Y Y +D KRA A+MSDVKNNLTGLVLPKL R+ L++WVAL E++ R
Sbjct: 500 KRSCYRYRLDAKRATAFMSDVKNNLTGLVLPKLDRDLLASWVALAENAKR 549


>gb|AGG13294.1| Replicase [Garlic virus C]
          Length = 1529

 Score =  228 bits (582), Expect = 1e-56
 Identities = 110/172 (63%), Positives = 131/172 (76%)
 Frame = -1

Query: 2182 AAHHIMLITRRQAQTPWPLAPLWVFHPSDYVRLPPVFYPPEANVQNTYPHDLVKRMQAYC 2003
            AAHHI++I RR+ + PWPL P+WVFH SDYVRLP +FYP EANVQ  YPH  +KR+Q YC
Sbjct: 243  AAHHIVVIQRRRPELPWPLPPVWVFHASDYVRLPEIFYPKEANVQRPYPHVFIKRLQLYC 302

Query: 2002 FSVKAVSLRDIFAKLRQVIETAELKRYSMADLIRLANYLLLITGMEQVSDYECLLTKGWL 1823
            FSVKAVSLRDIFAK+RQV+ T EL R+S ADLIRLANYLL ITGM+Q SDY+  L +  L
Sbjct: 303  FSVKAVSLRDIFAKIRQVLPTEELARFSTADLIRLANYLLFITGMQQTSDYQSPLMESLL 362

Query: 1822 AKLSCRIRTRVRQLFESLRGKTSYAALLSVTDVIPVPFTTNPCVRGCDGISW 1667
             K+   IR R+R+ F+ L GK+SYAALL+VTDV P+ FTT P  R   G  W
Sbjct: 363  GKICLSIRARIREFFQDLMGKSSYAALLTVTDVRPIYFTTKPVRRPVCGEQW 414



 Score = 98.6 bits (244), Expect = 2e-17
 Identities = 57/135 (42%), Positives = 74/135 (54%), Gaps = 1/135 (0%)
 Frame = -1

Query: 406 PPSRTCEAAHRPKPDTSHVATAYPHLTPHQVDILVKHGFTNLKQQFSGTGAIEPIFENPR 227
           P     E+A  P+            L    V+IL  HGFTNLK Q  G   I P+F N +
Sbjct: 592 PVEPCAESAAEPRGSDKLTKVKLEPLDEETVEILKIHGFTNLKPQHDGQFQISPVFYNRQ 651

Query: 226 ASNFSVAPP-TSRSQRTVTSMASSIYRQVYSYPIDNKRAAAYMSDVKNNLTGLVLPKLSR 50
           A +        + +Q     MA ++ R  Y Y +D KRA A+MSDVKNNLTGLVLPKL R
Sbjct: 652 ARHLPHYDGIVTTTQSHFIDMARALKRSCYRYRLDAKRATAFMSDVKNNLTGLVLPKLDR 711

Query: 49  ETLSAWVALCEHSTR 5
           + L++WVAL E++ R
Sbjct: 712 DLLASWVALAENAKR 726


>ref|NP_569132.1| replicase [Garlic virus C] gi|2826157|dbj|BAA61818.1| replicase
            [Garlic virus C]
          Length = 1550

 Score =  228 bits (580), Expect = 2e-56
 Identities = 110/172 (63%), Positives = 131/172 (76%)
 Frame = -1

Query: 2182 AAHHIMLITRRQAQTPWPLAPLWVFHPSDYVRLPPVFYPPEANVQNTYPHDLVKRMQAYC 2003
            AAHHIM+I RR+ + PWPL P+WV+H SDYV+LP +FYP EANVQ  YPH  +KR+Q YC
Sbjct: 243  AAHHIMVIQRRRPELPWPLPPVWVYHASDYVKLPEIFYPTEANVQRPYPHVFIKRLQLYC 302

Query: 2002 FSVKAVSLRDIFAKLRQVIETAELKRYSMADLIRLANYLLLITGMEQVSDYECLLTKGWL 1823
            FSVKAVSLRDIFAK+RQV+ T EL R+S ADLIRLANYLL ITGM+Q SDY+  L +   
Sbjct: 303  FSVKAVSLRDIFAKIRQVLPTEELARFSTADLIRLANYLLFITGMQQTSDYQSPLMESLF 362

Query: 1822 AKLSCRIRTRVRQLFESLRGKTSYAALLSVTDVIPVPFTTNPCVRGCDGISW 1667
             KL   IR R+R+ F++L GK+SYAALL+VTDV PV FTT P  R   G  W
Sbjct: 363  GKLCLSIRARIREFFQNLMGKSSYAALLTVTDVHPVYFTTKPLRRPICGEQW 414



 Score = 99.8 bits (247), Expect = 9e-18
 Identities = 69/201 (34%), Positives = 99/201 (49%), Gaps = 1/201 (0%)
 Frame = -1

Query: 604  NTTPLPSHETSCTGEPEQDTSFPHLDEAMFXXXXXXXXXXXXXXXXATRAEETFGRTNST 425
            +TT  P+ + +      Q T  PH+ E++                  T  +ET  + ++ 
Sbjct: 570  HTTQTPTPDVTDESSAVQHTQTPHIAESLVDSDVFVGE---------TIDDET-QQPDTV 619

Query: 424  AAVPKAPPSRTCEAAHRPKPDTSHVATAYPHLTPHQVDILVKHGFTNLKQQFSGTGAIEP 245
             AV     SR+   A  P  + +             ++IL  HGFTNLK Q  G   I P
Sbjct: 620  PAVQTRENSRSTTVALEPFDEET-------------IEILKIHGFTNLKPQHDGEFQIAP 666

Query: 244  IFENPRASNFSVAPP-TSRSQRTVTSMASSIYRQVYSYPIDNKRAAAYMSDVKNNLTGLV 68
            +F N  A +       T+ +Q    +MA ++ R  Y Y +D KRA A+MSDVKNNLTGLV
Sbjct: 667  VFYNRLAKHIPTYEGITTTTQSQFIAMAQALKRNCYRYKLDAKRATAFMSDVKNNLTGLV 726

Query: 67   LPKLSRETLSAWVALCEHSTR 5
            LPKL R+ L++WVAL E++ R
Sbjct: 727  LPKLDRDLLTSWVALAENAKR 747


>gb|AGG13300.1| Replicase [Garlic virus C]
          Length = 1550

 Score =  228 bits (580), Expect = 2e-56
 Identities = 110/172 (63%), Positives = 131/172 (76%)
 Frame = -1

Query: 2182 AAHHIMLITRRQAQTPWPLAPLWVFHPSDYVRLPPVFYPPEANVQNTYPHDLVKRMQAYC 2003
            AAHHIM+I RR+ + PWPL P+WV+H SDYV+LP +FYP EANVQ  YPH  +KR+Q YC
Sbjct: 243  AAHHIMVIQRRRPELPWPLPPVWVYHASDYVKLPEIFYPTEANVQRPYPHVFIKRLQLYC 302

Query: 2002 FSVKAVSLRDIFAKLRQVIETAELKRYSMADLIRLANYLLLITGMEQVSDYECLLTKGWL 1823
            FSVKAVSLRDIFAK+RQV+ T EL R+S ADLIRLANYLL ITGM+Q SDY+  L +   
Sbjct: 303  FSVKAVSLRDIFAKIRQVLPTEELARFSTADLIRLANYLLFITGMQQTSDYQSPLMESLF 362

Query: 1822 AKLSCRIRTRVRQLFESLRGKTSYAALLSVTDVIPVPFTTNPCVRGCDGISW 1667
             KL   IR R+R+ F++L GK+SYAALL+VTDV PV FTT P  R   G  W
Sbjct: 363  GKLCLSIRARIREFFQNLMGKSSYAALLTVTDVRPVYFTTKPLRRPICGEQW 414



 Score = 98.6 bits (244), Expect = 2e-17
 Identities = 52/105 (49%), Positives = 68/105 (64%), Gaps = 1/105 (0%)
 Frame = -1

Query: 316 VDILVKHGFTNLKQQFSGTGAIEPIFENPRASNFSVAPP-TSRSQRTVTSMASSIYRQVY 140
           ++IL  HGFTNLK Q  G   I P+F N  A +       T+ +Q    +MA ++ R  Y
Sbjct: 643 IEILKIHGFTNLKPQHDGEFQIAPVFYNRLAKHIPTYEGITTTTQSQFIAMAQALKRNCY 702

Query: 139 SYPIDNKRAAAYMSDVKNNLTGLVLPKLSRETLSAWVALCEHSTR 5
            Y +D KRA A+MSDVKNNLTGLVLPKL R+ L++WVAL E++ R
Sbjct: 703 RYKLDAKRATAFMSDVKNNLTGLVLPKLDRDLLTSWVALAENAKR 747


>gb|ALK24278.1| replicase [Garlic virus D]
          Length = 1562

 Score =  226 bits (577), Expect = 5e-56
 Identities = 110/172 (63%), Positives = 132/172 (76%)
 Frame = -1

Query: 2182 AAHHIMLITRRQAQTPWPLAPLWVFHPSDYVRLPPVFYPPEANVQNTYPHDLVKRMQAYC 2003
            AAHHI+LI RR+ + PWPL P+WV+H SDYV+LP +FYP EANVQ  YPH  +KR+Q YC
Sbjct: 258  AAHHIVLIQRRRPELPWPLPPVWVYHASDYVKLPEIFYPAEANVQKAYPHIFIKRLQLYC 317

Query: 2002 FSVKAVSLRDIFAKLRQVIETAELKRYSMADLIRLANYLLLITGMEQVSDYECLLTKGWL 1823
            FSVKAVSLRDIFAK+RQVI T EL R+S ADLIRLANYLL ITGM+  SDY+  L +  L
Sbjct: 318  FSVKAVSLRDIFAKIRQVIPTEELARFSTADLIRLANYLLFITGMQSTSDYQSPLMESLL 377

Query: 1822 AKLSCRIRTRVRQLFESLRGKTSYAALLSVTDVIPVPFTTNPCVRGCDGISW 1667
             KL   IR RVR+ F+++ GK+SYAALL+VTDV P+ FTT P  R   G +W
Sbjct: 378  GKLCLSIRARVREFFQNILGKSSYAALLTVTDVRPIYFTTTPRRRRICGEAW 429



 Score =  107 bits (268), Expect = 3e-20
 Identities = 59/127 (46%), Positives = 74/127 (58%), Gaps = 1/127 (0%)
 Frame = -1

Query: 379  HRPKPDTSHVATAYPHLTPHQVDILVKHGFTNLKQQFSGTGAIEPIFENPRASNFSVAPP 200
            H  KPD          L    V++L  HGFTN K Q+ G   I+PIF N  A   +    
Sbjct: 631  HEDKPDKPVAKVKLNPLDDDTVELLKIHGFTNYKAQYDGEDQIQPIFRNANARFLTHYTT 690

Query: 199  T-SRSQRTVTSMASSIYRQVYSYPIDNKRAAAYMSDVKNNLTGLVLPKLSRETLSAWVAL 23
            T +  Q+    MA  + R  Y Y I+ KRA A+MSDVKNNLTGLVLPKL R+ LS+WV+L
Sbjct: 691  TVAGPQQCFIDMAHGLRRHCYEYRINAKRATAFMSDVKNNLTGLVLPKLERDLLSSWVSL 750

Query: 22   CEHSTRE 2
             EH+TR+
Sbjct: 751  AEHATRK 757


>gb|AHA90833.1| replicase [Garlic virus D]
          Length = 1561

 Score =  226 bits (577), Expect = 5e-56
 Identities = 110/172 (63%), Positives = 132/172 (76%)
 Frame = -1

Query: 2182 AAHHIMLITRRQAQTPWPLAPLWVFHPSDYVRLPPVFYPPEANVQNTYPHDLVKRMQAYC 2003
            AAHHI+LI RR+ + PWPL P+WVFH SDYV+LP +FYP EANVQ  YPH  +KR+Q YC
Sbjct: 258  AAHHIVLIQRRRPELPWPLPPVWVFHASDYVKLPEIFYPAEANVQKAYPHIFIKRLQLYC 317

Query: 2002 FSVKAVSLRDIFAKLRQVIETAELKRYSMADLIRLANYLLLITGMEQVSDYECLLTKGWL 1823
            FSVKAVSLRDIFAK+RQVI T EL R+S ADLIRLANYLL ITGM+  SDY+  L +  L
Sbjct: 318  FSVKAVSLRDIFAKIRQVIPTEELARFSTADLIRLANYLLFITGMQSTSDYQSPLMESLL 377

Query: 1822 AKLSCRIRTRVRQLFESLRGKTSYAALLSVTDVIPVPFTTNPCVRGCDGISW 1667
             KL   IR RVR+ F+++ G++SYAALL+VTDV P+ FTT P  R   G +W
Sbjct: 378  GKLCLSIRARVREFFQNILGRSSYAALLTVTDVRPIYFTTTPRRRKICGEAW 429



 Score =  112 bits (279), Expect = 2e-21
 Identities = 63/135 (46%), Positives = 79/135 (58%), Gaps = 2/135 (1%)
 Frame = -1

Query: 400  SRTCEAAHR-PKPDTSHVATAYPHLTPHQVDILVKHGFTNLKQQFSGTGAIEPIFENPRA 224
            SRT   + R  KPD          L    V++L  HGFTN + Q+ G   I+PIF NP  
Sbjct: 622  SRTEHNSERGEKPDKPAAKVKLHPLDDDTVELLKIHGFTNYRAQYDGEDQIQPIFRNPNT 681

Query: 223  SNFSVAPPTS-RSQRTVTSMASSIYRQVYSYPIDNKRAAAYMSDVKNNLTGLVLPKLSRE 47
               +    T+   QR    MA  + RQ Y Y I+ KRA A+MSDVKNNLTGLVLPKL R+
Sbjct: 682  RTLTQFTTTAPEPQRCFIEMAHGLKRQCYEYRINAKRATAFMSDVKNNLTGLVLPKLERD 741

Query: 46   TLSAWVALCEHSTRE 2
             LS+WV+L EH+TR+
Sbjct: 742  LLSSWVSLAEHATRK 756