BLASTX nr result
ID: Mentha29_contig00038915
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Mentha29_contig00038915
(379 letters)
Database: ./nr
38,876,450 sequences; 13,856,398,315 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_007013104.1| Eukaryotic rpb5 RNA polymerase subunit famil... 158 7e-37
ref|XP_007219752.1| hypothetical protein PRUPE_ppa024345mg [Prun... 158 7e-37
emb|CBI28035.3| unnamed protein product [Vitis vinifera] 158 7e-37
ref|XP_002284107.1| PREDICTED: DNA-directed RNA polymerases I, I... 158 7e-37
gb|EYU34199.1| hypothetical protein MIMGU_mgv1a013932mg [Mimulus... 158 9e-37
ref|XP_004161536.1| PREDICTED: DNA-directed RNA polymerases I, I... 157 1e-36
ref|XP_004148944.1| PREDICTED: DNA-directed RNA polymerases I, I... 157 1e-36
ref|NP_001237497.1| uncharacterized protein LOC100306098 [Glycin... 157 1e-36
ref|NP_001238044.1| uncharacterized protein LOC100499667 [Glycin... 157 1e-36
ref|XP_007152860.1| hypothetical protein PHAVU_004G166200g [Phas... 157 1e-36
ref|XP_006381734.1| DNA-directed RNA polymerase family protein [... 157 1e-36
ref|XP_006353289.1| PREDICTED: DNA-directed RNA polymerases II a... 156 3e-36
ref|XP_002514265.1| DNA-directed RNA polymerase II, putative [Ri... 156 3e-36
gb|EPS66115.1| hypothetical protein M569_08662, partial [Genlise... 155 4e-36
ref|XP_006451215.1| hypothetical protein CICLE_v10009504mg [Citr... 155 7e-36
ref|XP_004239999.1| PREDICTED: DNA-directed RNA polymerases I, I... 155 7e-36
gb|EXC15864.1| DNA-directed RNA polymerases I, II, and III subun... 154 1e-35
ref|XP_006406183.1| hypothetical protein EUTSA_v10021534mg [Eutr... 154 1e-35
ref|XP_006298572.1| hypothetical protein CARUB_v10014656mg [Caps... 154 1e-35
ref|NP_188871.1| DNA-directed RNA polymerase NRPB5 [Arabidopsis ... 154 1e-35
>ref|XP_007013104.1| Eukaryotic rpb5 RNA polymerase subunit family protein isoform 1
[Theobroma cacao] gi|508783467|gb|EOY30723.1| Eukaryotic
rpb5 RNA polymerase subunit family protein isoform 1
[Theobroma cacao]
Length = 206
Score = 158 bits (400), Expect = 7e-37
Identities = 79/111 (71%), Positives = 95/111 (85%)
Frame = +1
Query: 1 RAIIVGTKVLTYMARTYVNEASIKGYHLEVFLEGELMVNISEHELVPQHQLLTPEEKKSL 180
RA++V + LT ART +NE S K +HLEVF E EL+VN+ EH LVP+HQ+LT EEKK+L
Sbjct: 97 RAVLVVQQNLTPFARTCINEISSK-FHLEVFQESELLVNVKEHSLVPEHQVLTNEEKKTL 155
Query: 181 LERYTVKETQLPRIQISDPVAKYYGLRRGEVVKIIRSSETAGRYVTYRLVV 333
L+RYTVKETQLPRIQ+SDP+A+YYGL+RG+VVKIIR SETAGRYVTYR VV
Sbjct: 156 LQRYTVKETQLPRIQVSDPIARYYGLKRGQVVKIIRPSETAGRYVTYRYVV 206
>ref|XP_007219752.1| hypothetical protein PRUPE_ppa024345mg [Prunus persica]
gi|462416214|gb|EMJ20951.1| hypothetical protein
PRUPE_ppa024345mg [Prunus persica]
Length = 206
Score = 158 bits (400), Expect = 7e-37
Identities = 80/111 (72%), Positives = 97/111 (87%)
Frame = +1
Query: 1 RAIIVGTKVLTYMARTYVNEASIKGYHLEVFLEGELMVNISEHELVPQHQLLTPEEKKSL 180
RAI+V + +T MART ++E S K +H+EVF E ELMVN++EH LVP+HQLLT EEKK+L
Sbjct: 97 RAILVTQQNMTPMARTCISEISSK-FHMEVFQEPELMVNVTEHVLVPEHQLLTNEEKKTL 155
Query: 181 LERYTVKETQLPRIQISDPVAKYYGLRRGEVVKIIRSSETAGRYVTYRLVV 333
LERYTVKETQLPRIQ++DPVAKYYGL+RG+V+KIIR SETAGRY+TYR VV
Sbjct: 156 LERYTVKETQLPRIQLTDPVAKYYGLKRGQVMKIIRPSETAGRYITYRYVV 206
>emb|CBI28035.3| unnamed protein product [Vitis vinifera]
Length = 186
Score = 158 bits (400), Expect = 7e-37
Identities = 80/111 (72%), Positives = 95/111 (85%)
Frame = +1
Query: 1 RAIIVGTKVLTYMARTYVNEASIKGYHLEVFLEGELMVNISEHELVPQHQLLTPEEKKSL 180
RAI+V + LT ART +NE S K +HLEVF E EL+VNI EH LVP+HQ+LT EEKK+L
Sbjct: 77 RAILVVQQNLTPFARTCINEISTK-FHLEVFQEAELLVNIKEHVLVPEHQVLTSEEKKTL 135
Query: 181 LERYTVKETQLPRIQISDPVAKYYGLRRGEVVKIIRSSETAGRYVTYRLVV 333
LERYTVKETQLPRIQ+SDP+A+Y+GL+RG+VVKIIR SETAGRY+TYR VV
Sbjct: 136 LERYTVKETQLPRIQVSDPIARYFGLKRGQVVKIIRPSETAGRYITYRYVV 186
>ref|XP_002284107.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC1 isoform 1 [Vitis vinifera]
gi|225445172|ref|XP_002284110.1| PREDICTED: DNA-directed
RNA polymerases I, II, and III subunit RPABC1 isoform 2
[Vitis vinifera]
Length = 206
Score = 158 bits (400), Expect = 7e-37
Identities = 80/111 (72%), Positives = 95/111 (85%)
Frame = +1
Query: 1 RAIIVGTKVLTYMARTYVNEASIKGYHLEVFLEGELMVNISEHELVPQHQLLTPEEKKSL 180
RAI+V + LT ART +NE S K +HLEVF E EL+VNI EH LVP+HQ+LT EEKK+L
Sbjct: 97 RAILVVQQNLTPFARTCINEISTK-FHLEVFQEAELLVNIKEHVLVPEHQVLTSEEKKTL 155
Query: 181 LERYTVKETQLPRIQISDPVAKYYGLRRGEVVKIIRSSETAGRYVTYRLVV 333
LERYTVKETQLPRIQ+SDP+A+Y+GL+RG+VVKIIR SETAGRY+TYR VV
Sbjct: 156 LERYTVKETQLPRIQVSDPIARYFGLKRGQVVKIIRPSETAGRYITYRYVV 206
>gb|EYU34199.1| hypothetical protein MIMGU_mgv1a013932mg [Mimulus guttatus]
Length = 206
Score = 158 bits (399), Expect = 9e-37
Identities = 78/111 (70%), Positives = 95/111 (85%)
Frame = +1
Query: 1 RAIIVGTKVLTYMARTYVNEASIKGYHLEVFLEGELMVNISEHELVPQHQLLTPEEKKSL 180
RA+++ + LT ART ++E S K +HLEVF E E+++NI EH LVP+HQ+LTPEEKK+L
Sbjct: 97 RAVLIVQQNLTPFARTCISEISTK-FHLEVFQEAEMLINIKEHVLVPEHQVLTPEEKKTL 155
Query: 181 LERYTVKETQLPRIQISDPVAKYYGLRRGEVVKIIRSSETAGRYVTYRLVV 333
LERYTVKETQLPRIQI+DP+A+YYGL+RG VVKIIR SETAGRYVTYR VV
Sbjct: 156 LERYTVKETQLPRIQITDPIARYYGLKRGHVVKIIRPSETAGRYVTYRYVV 206
>ref|XP_004161536.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC1-like [Cucumis sativus]
Length = 208
Score = 157 bits (398), Expect = 1e-36
Identities = 79/111 (71%), Positives = 94/111 (84%)
Frame = +1
Query: 1 RAIIVGTKVLTYMARTYVNEASIKGYHLEVFLEGELMVNISEHELVPQHQLLTPEEKKSL 180
RAI+V + LT AR ++EA+ K +HLEVF E EL+VNI +H LVP+HQLL EEKK+L
Sbjct: 98 RAILVVQQNLTPFARACMSEATSKSFHLEVFQEAELLVNIKDHVLVPEHQLLNNEEKKTL 157
Query: 181 LERYTVKETQLPRIQISDPVAKYYGLRRGEVVKIIRSSETAGRYVTYRLVV 333
LERYTVKETQLPRIQ++DPVA+YYGL+RG+VVKIIR SETAGRYVTYR VV
Sbjct: 158 LERYTVKETQLPRIQVTDPVARYYGLKRGQVVKIIRPSETAGRYVTYRYVV 208
>ref|XP_004148944.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC1-like [Cucumis sativus]
Length = 207
Score = 157 bits (398), Expect = 1e-36
Identities = 79/111 (71%), Positives = 94/111 (84%)
Frame = +1
Query: 1 RAIIVGTKVLTYMARTYVNEASIKGYHLEVFLEGELMVNISEHELVPQHQLLTPEEKKSL 180
RAI+V + LT AR ++EA+ K +HLEVF E EL+VNI +H LVP+HQLL EEKK+L
Sbjct: 97 RAILVVQQNLTPFARACMSEATSKSFHLEVFQEAELLVNIKDHVLVPEHQLLNNEEKKTL 156
Query: 181 LERYTVKETQLPRIQISDPVAKYYGLRRGEVVKIIRSSETAGRYVTYRLVV 333
LERYTVKETQLPRIQ++DPVA+YYGL+RG+VVKIIR SETAGRYVTYR VV
Sbjct: 157 LERYTVKETQLPRIQVTDPVARYYGLKRGQVVKIIRPSETAGRYVTYRYVV 207
>ref|NP_001237497.1| uncharacterized protein LOC100306098 [Glycine max]
gi|255627545|gb|ACU14117.1| unknown [Glycine max]
Length = 206
Score = 157 bits (398), Expect = 1e-36
Identities = 81/111 (72%), Positives = 94/111 (84%)
Frame = +1
Query: 1 RAIIVGTKVLTYMARTYVNEASIKGYHLEVFLEGELMVNISEHELVPQHQLLTPEEKKSL 180
RAI+V LT ART ++E S K +HLEVF E EL+VNI EHELVP+HQ+LT EKK+L
Sbjct: 97 RAILVTQTNLTPFARTCISEISSK-FHLEVFQEAELLVNIKEHELVPEHQVLTDAEKKTL 155
Query: 181 LERYTVKETQLPRIQISDPVAKYYGLRRGEVVKIIRSSETAGRYVTYRLVV 333
LERYTVKETQLPRIQ++DPVA+YYGL+RG+VVKIIR SETAGRYVTYR VV
Sbjct: 156 LERYTVKETQLPRIQVTDPVARYYGLKRGQVVKIIRPSETAGRYVTYRFVV 206
>ref|NP_001238044.1| uncharacterized protein LOC100499667 [Glycine max]
gi|255625665|gb|ACU13177.1| unknown [Glycine max]
Length = 206
Score = 157 bits (398), Expect = 1e-36
Identities = 81/111 (72%), Positives = 94/111 (84%)
Frame = +1
Query: 1 RAIIVGTKVLTYMARTYVNEASIKGYHLEVFLEGELMVNISEHELVPQHQLLTPEEKKSL 180
RAI+V LT ART ++E S K +HLEVF E EL+VNI EHELVP+HQ+LT EKK+L
Sbjct: 97 RAILVTQTNLTPFARTCISEISSK-FHLEVFQEAELLVNIKEHELVPEHQVLTDAEKKTL 155
Query: 181 LERYTVKETQLPRIQISDPVAKYYGLRRGEVVKIIRSSETAGRYVTYRLVV 333
LERYTVKETQLPRIQ++DPVA+YYGL+RG+VVKIIR SETAGRYVTYR VV
Sbjct: 156 LERYTVKETQLPRIQVTDPVARYYGLKRGQVVKIIRPSETAGRYVTYRFVV 206
>ref|XP_007152860.1| hypothetical protein PHAVU_004G166200g [Phaseolus vulgaris]
gi|561026169|gb|ESW24854.1| hypothetical protein
PHAVU_004G166200g [Phaseolus vulgaris]
Length = 207
Score = 157 bits (397), Expect = 1e-36
Identities = 81/111 (72%), Positives = 94/111 (84%)
Frame = +1
Query: 1 RAIIVGTKVLTYMARTYVNEASIKGYHLEVFLEGELMVNISEHELVPQHQLLTPEEKKSL 180
RAI+V LT ART V+E S K +HLEVF E EL+VNI EHELVP+HQ+LT EKK+L
Sbjct: 98 RAILVTQTNLTPFARTCVSEISSK-FHLEVFQEAELLVNIKEHELVPEHQVLTDAEKKTL 156
Query: 181 LERYTVKETQLPRIQISDPVAKYYGLRRGEVVKIIRSSETAGRYVTYRLVV 333
+ERYTVKETQLPRIQ++DPVA+YYGL+RG+VVKIIR SETAGRYVTYR VV
Sbjct: 157 IERYTVKETQLPRIQVTDPVARYYGLKRGQVVKIIRPSETAGRYVTYRFVV 207
>ref|XP_006381734.1| DNA-directed RNA polymerase family protein [Populus trichocarpa]
gi|550336487|gb|ERP59531.1| DNA-directed RNA polymerase
family protein [Populus trichocarpa]
Length = 206
Score = 157 bits (397), Expect = 1e-36
Identities = 80/111 (72%), Positives = 95/111 (85%)
Frame = +1
Query: 1 RAIIVGTKVLTYMARTYVNEASIKGYHLEVFLEGELMVNISEHELVPQHQLLTPEEKKSL 180
RAI+V + LT ART +NE S K +HLEVF E EL+VNI EH LVP+HQ+L+ EEKK+L
Sbjct: 97 RAILVVQQNLTPFARTCINEISTK-FHLEVFQEAELLVNIKEHVLVPEHQVLSNEEKKTL 155
Query: 181 LERYTVKETQLPRIQISDPVAKYYGLRRGEVVKIIRSSETAGRYVTYRLVV 333
LERYTVKETQLPRIQI+DP+A+YYGL+RG+VVKIIR SETAGRYVTYR V+
Sbjct: 156 LERYTVKETQLPRIQITDPIARYYGLKRGQVVKIIRPSETAGRYVTYRYVI 206
>ref|XP_006353289.1| PREDICTED: DNA-directed RNA polymerases II and IV subunit 5A-like
[Solanum tuberosum]
Length = 206
Score = 156 bits (395), Expect = 3e-36
Identities = 78/111 (70%), Positives = 95/111 (85%)
Frame = +1
Query: 1 RAIIVGTKVLTYMARTYVNEASIKGYHLEVFLEGELMVNISEHELVPQHQLLTPEEKKSL 180
+AI++ + LT ART ++E SIK +HLEVF E E++VNI H L+P+HQ LTPEEKK+L
Sbjct: 97 QAILIVQQNLTPFARTCISEISIK-FHLEVFQEAEMLVNIKNHVLIPKHQTLTPEEKKTL 155
Query: 181 LERYTVKETQLPRIQISDPVAKYYGLRRGEVVKIIRSSETAGRYVTYRLVV 333
LERYTVKETQLPRIQI+DP+A+YYGL+RG+VVKIIR SETAGRYVTYR VV
Sbjct: 156 LERYTVKETQLPRIQITDPIARYYGLKRGQVVKIIRPSETAGRYVTYRYVV 206
>ref|XP_002514265.1| DNA-directed RNA polymerase II, putative [Ricinus communis]
gi|223546721|gb|EEF48219.1| DNA-directed RNA polymerase
II, putative [Ricinus communis]
Length = 225
Score = 156 bits (394), Expect = 3e-36
Identities = 81/111 (72%), Positives = 94/111 (84%)
Frame = +1
Query: 1 RAIIVGTKVLTYMARTYVNEASIKGYHLEVFLEGELMVNISEHELVPQHQLLTPEEKKSL 180
RAI+V + LT ART + E + K +HLEVF E EL+VNI EH LVP+HQ+LT EEKK+L
Sbjct: 116 RAILVVQQSLTPFARTCIAEIASK-FHLEVFQESELLVNIKEHVLVPEHQVLTNEEKKTL 174
Query: 181 LERYTVKETQLPRIQISDPVAKYYGLRRGEVVKIIRSSETAGRYVTYRLVV 333
LERYTVKETQLPRIQISDP+A+YYGL+RG+VVKIIR SETAGRYVTYR VV
Sbjct: 175 LERYTVKETQLPRIQISDPIARYYGLKRGQVVKIIRPSETAGRYVTYRYVV 225
>gb|EPS66115.1| hypothetical protein M569_08662, partial [Genlisea aurea]
Length = 208
Score = 155 bits (393), Expect = 4e-36
Identities = 75/111 (67%), Positives = 94/111 (84%)
Frame = +1
Query: 1 RAIIVGTKVLTYMARTYVNEASIKGYHLEVFLEGELMVNISEHELVPQHQLLTPEEKKSL 180
+AI+V + LT +AR+ + E +HLEVF E EL++NI +H LVP+HQLL+PEEKK+L
Sbjct: 98 KAILVVQQNLTPIARSCITETISSKFHLEVFQEAELLINIKDHVLVPEHQLLSPEEKKTL 157
Query: 181 LERYTVKETQLPRIQISDPVAKYYGLRRGEVVKIIRSSETAGRYVTYRLVV 333
LERYTVKETQLPRIQ++DP+A+YYG++RGEVVKIIR SETAGRYVTYR VV
Sbjct: 158 LERYTVKETQLPRIQVTDPIARYYGMKRGEVVKIIRPSETAGRYVTYRYVV 208
>ref|XP_006451215.1| hypothetical protein CICLE_v10009504mg [Citrus clementina]
gi|567918420|ref|XP_006451216.1| hypothetical protein
CICLE_v10009504mg [Citrus clementina]
gi|568843556|ref|XP_006475670.1| PREDICTED: DNA-directed
RNA polymerases II and IV subunit 5A-like isoform X1
[Citrus sinensis] gi|568843558|ref|XP_006475671.1|
PREDICTED: DNA-directed RNA polymerases II and IV
subunit 5A-like isoform X2 [Citrus sinensis]
gi|568843560|ref|XP_006475672.1| PREDICTED: DNA-directed
RNA polymerases II and IV subunit 5A-like isoform X3
[Citrus sinensis] gi|557554441|gb|ESR64455.1|
hypothetical protein CICLE_v10009504mg [Citrus
clementina] gi|557554442|gb|ESR64456.1| hypothetical
protein CICLE_v10009504mg [Citrus clementina]
Length = 206
Score = 155 bits (391), Expect = 7e-36
Identities = 79/111 (71%), Positives = 94/111 (84%)
Frame = +1
Query: 1 RAIIVGTKVLTYMARTYVNEASIKGYHLEVFLEGELMVNISEHELVPQHQLLTPEEKKSL 180
RAI+V + LT ART + E S K +HLEVF E EL+VNI EH LVP+HQ+LT EEKK+L
Sbjct: 97 RAILVVQQNLTPFARTCIQEISAK-FHLEVFQEAELLVNIKEHVLVPEHQVLTNEEKKTL 155
Query: 181 LERYTVKETQLPRIQISDPVAKYYGLRRGEVVKIIRSSETAGRYVTYRLVV 333
L+RYTVKETQLPRIQ++DP+A+YYGL+RG+VVKIIR SETAGRYVTYR VV
Sbjct: 156 LKRYTVKETQLPRIQVTDPIARYYGLKRGQVVKIIRPSETAGRYVTYRYVV 206
>ref|XP_004239999.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC1-like isoform 1 [Solanum lycopersicum]
gi|460388693|ref|XP_004240000.1| PREDICTED: DNA-directed
RNA polymerases I, II, and III subunit RPABC1-like
isoform 2 [Solanum lycopersicum]
Length = 206
Score = 155 bits (391), Expect = 7e-36
Identities = 76/111 (68%), Positives = 95/111 (85%)
Frame = +1
Query: 1 RAIIVGTKVLTYMARTYVNEASIKGYHLEVFLEGELMVNISEHELVPQHQLLTPEEKKSL 180
+AI++ + LT ART ++E S K +HLEVF E E++VNI H L+P+HQLL+PEEKK+L
Sbjct: 97 QAILIVQQNLTPFARTCISEISTK-FHLEVFQEAEMLVNIKNHVLIPEHQLLSPEEKKTL 155
Query: 181 LERYTVKETQLPRIQISDPVAKYYGLRRGEVVKIIRSSETAGRYVTYRLVV 333
LERYTVKETQLPRIQI+DP+A+YYGL+RG+VVKIIR SETAGRY+TYR VV
Sbjct: 156 LERYTVKETQLPRIQITDPIARYYGLKRGQVVKIIRPSETAGRYITYRYVV 206
>gb|EXC15864.1| DNA-directed RNA polymerases I, II, and III subunit RPABC1 [Morus
notabilis]
Length = 253
Score = 154 bits (390), Expect = 1e-35
Identities = 77/110 (70%), Positives = 94/110 (85%)
Frame = +1
Query: 1 RAIIVGTKVLTYMARTYVNEASIKGYHLEVFLEGELMVNISEHELVPQHQLLTPEEKKSL 180
RA++V + LT ART ++E S K +HLEVF E EL+VNI EH LVP+HQ+LT EEKK+L
Sbjct: 97 RAVLVVQQNLTPFARTCISEISTK-FHLEVFQEAELLVNIKEHVLVPEHQVLTNEEKKTL 155
Query: 181 LERYTVKETQLPRIQISDPVAKYYGLRRGEVVKIIRSSETAGRYVTYRLV 330
LERYTVKETQLPRIQ++DP+A+YYGL+RG+VVKIIR SETAGRY+TYR V
Sbjct: 156 LERYTVKETQLPRIQVTDPIARYYGLKRGQVVKIIRPSETAGRYITYRYV 205
>ref|XP_006406183.1| hypothetical protein EUTSA_v10021534mg [Eutrema salsugineum]
gi|557107329|gb|ESQ47636.1| hypothetical protein
EUTSA_v10021534mg [Eutrema salsugineum]
Length = 206
Score = 154 bits (390), Expect = 1e-35
Identities = 78/111 (70%), Positives = 95/111 (85%)
Frame = +1
Query: 1 RAIIVGTKVLTYMARTYVNEASIKGYHLEVFLEGELMVNISEHELVPQHQLLTPEEKKSL 180
RAI+V + LT ART ++E S K +HLEVF E E++VNI EH LVP+HQ+LT EEKK+L
Sbjct: 97 RAILVVQQNLTPFARTCISEISSK-FHLEVFQEAEMLVNIKEHVLVPEHQVLTTEEKKTL 155
Query: 181 LERYTVKETQLPRIQISDPVAKYYGLRRGEVVKIIRSSETAGRYVTYRLVV 333
LERYTVKETQLPRIQ++DP+A+Y+GL+RG+VVKIIR SETAGRYVTYR VV
Sbjct: 156 LERYTVKETQLPRIQVTDPIARYFGLKRGQVVKIIRPSETAGRYVTYRYVV 206
>ref|XP_006298572.1| hypothetical protein CARUB_v10014656mg [Capsella rubella]
gi|482567281|gb|EOA31470.1| hypothetical protein
CARUB_v10014656mg [Capsella rubella]
Length = 205
Score = 154 bits (390), Expect = 1e-35
Identities = 78/111 (70%), Positives = 95/111 (85%)
Frame = +1
Query: 1 RAIIVGTKVLTYMARTYVNEASIKGYHLEVFLEGELMVNISEHELVPQHQLLTPEEKKSL 180
RAI+V + LT ART ++E S K +HLEVF E E++VNI EH LVP+HQ+LT EEKK+L
Sbjct: 96 RAILVVQQNLTPFARTCISEISSK-FHLEVFQEAEMLVNIKEHVLVPEHQVLTSEEKKTL 154
Query: 181 LERYTVKETQLPRIQISDPVAKYYGLRRGEVVKIIRSSETAGRYVTYRLVV 333
LERYTVKETQLPRIQ++DP+A+Y+GL+RG+VVKIIR SETAGRYVTYR VV
Sbjct: 155 LERYTVKETQLPRIQVTDPIARYFGLKRGQVVKIIRPSETAGRYVTYRYVV 205
>ref|NP_188871.1| DNA-directed RNA polymerase NRPB5 [Arabidopsis thaliana]
gi|75275037|sp|O81098.1|RPB5A_ARATH RecName:
Full=DNA-directed RNA polymerases II and IV subunit 5A;
Short=RPB5a; AltName: Full=DNA-directed RNA polymerase
II subunit E; AltName: Full=RNA polymerase I, II and III
24.3 kDa subunit; Short=AtRPB24.3
gi|13899113|gb|AAK48978.1|AF370551_1 RNA polymerase I,
II and III 24.3 kDa subunit [Arabidopsis thaliana]
gi|15724322|gb|AAL06554.1|AF412101_1 AT3g22320/MCB17_5
[Arabidopsis thaliana] gi|3372233|gb|AAC28253.1| RNA
polymerase I, II and III 24.3 kDa subunit [Arabidopsis
thaliana] gi|9293866|dbj|BAB01769.1| RNA polymerase I,
II and III 24.3 kDa subunit [Arabidopsis thaliana]
gi|21554280|gb|AAM63355.1| RNA polymerase I, II and III
24.3 kDa subunit [Arabidopsis thaliana]
gi|25083949|gb|AAN72141.1| RNA polymerase I, II and III
24.3 kDa subunit [Arabidopsis thaliana]
gi|332643100|gb|AEE76621.1| DNA-directed RNA polymerase
NRPB5 [Arabidopsis thaliana]
Length = 205
Score = 154 bits (390), Expect = 1e-35
Identities = 78/111 (70%), Positives = 95/111 (85%)
Frame = +1
Query: 1 RAIIVGTKVLTYMARTYVNEASIKGYHLEVFLEGELMVNISEHELVPQHQLLTPEEKKSL 180
RAI+V + LT ART ++E S K +HLEVF E E++VNI EH LVP+HQ+LT EEKK+L
Sbjct: 96 RAILVVQQNLTPFARTCISEISSK-FHLEVFQEAEMLVNIKEHVLVPEHQVLTTEEKKTL 154
Query: 181 LERYTVKETQLPRIQISDPVAKYYGLRRGEVVKIIRSSETAGRYVTYRLVV 333
LERYTVKETQLPRIQ++DP+A+Y+GL+RG+VVKIIR SETAGRYVTYR VV
Sbjct: 155 LERYTVKETQLPRIQVTDPIARYFGLKRGQVVKIIRPSETAGRYVTYRYVV 205