BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Mentha29_contig00034807
         (761 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CAN74951.1| hypothetical protein VITISV_030567 [Vitis vinifera]   129   9e-28
gb|AAK02020.2|AC074283_1 Putative gag-pol polyprotein [Oryza sat...   116   8e-24
emb|CAH67640.1| H0102C09.1 [Oryza sativa Indica Group]                115   1e-23
emb|CAH67225.1| OSIGBa0145M07.7 [Oryza sativa Indica Group]           114   3e-23
emb|CAE05450.3| OSJNBa0073E02.10 [Oryza sativa Japonica Group]        114   3e-23
emb|CAN61322.1| hypothetical protein VITISV_012106 [Vitis vinifera]   113   8e-23
gb|ABA94311.1| retrotransposon protein, putative, Ty1-copia subc...   112   2e-22
gb|ABA95367.1| retrotransposon protein, putative, Ty1-copia subc...   111   3e-22
gb|ACN32036.1| unknown [Zea mays]                                     110   7e-22
gb|EEE57553.1| hypothetical protein OsJ_07890 [Oryza sativa Japo...   109   9e-22
dbj|BAG98101.1| unnamed protein product [Oryza sativa Japonica G...   109   9e-22
emb|CAN59952.1| hypothetical protein VITISV_006720 [Vitis vinifera]   108   2e-21
pir||T02087 gag/pol polyprotein - maize retrotransposon Hopscotc...   108   2e-21
gb|ACL54615.1| unknown [Zea mays]                                     108   2e-21
gb|ABG00000.1| retrotransposon protein, putative, Ty1-copia subc...   108   2e-21
gb|AAP21398.1| putative gag-pol polyprotein [Oryza sativa Japoni...   108   2e-21
emb|CAN77775.1| hypothetical protein VITISV_021887 [Vitis vinifera]   107   5e-21
gb|AAU10682.1| putative polyprotein [Oryza sativa Japonica Group]     107   6e-21
emb|CAN81355.1| hypothetical protein VITISV_039158 [Vitis vinifera]   106   8e-21
emb|CAD40946.1| OSJNBa0027G07.12 [Oryza sativa Japonica Group]        106   8e-21

>emb|CAN74951.1| hypothetical protein VITISV_030567 [Vitis vinifera]
          Length = 2203

 Score =  129 bits (325), Expect = 9e-28
 Identities = 88/283 (31%), Positives = 139/283 (49%), Gaps = 30/283 (10%)
 Frame = +2

Query: 2   SKAQIMR*RKQLQTTKKGSS*VEDYFMKLRSIADQLAAIGKPLDDDELLMYIMESFGP*Y 181
           SKA+ ++ R  LQ+ KKG+  + DY +K+R+IAD L+A GKP+ D++L++YI+   GP +
Sbjct: 26  SKARTLQLRFMLQSLKKGALSINDYVLKMRNIADMLSASGKPVPDEDLILYILGGLGPEF 85

Query: 182 ESLVVNIMQ*TEEPNLQEIQLAFQAYEIRLAQ*HQALIEHSANVVYRGRGQPSFGANVGG 361
           E++VVNI   +E  +LQE+    Q++EIRL Q        +A+V+      P+    +GG
Sbjct: 86  ETIVVNITSRSEAISLQEVHYLLQSHEIRLEQ------LSAASVI---DVPPAAHITIGG 136

Query: 362 VYGTVNGRGMVVGRGSEPNF---------GKMLVCQLCGRTCHVALKCFKRFDIHFTC-- 508
           V  +    G      S+ NF            +VCQLCG+  H A+KCF RFD++F    
Sbjct: 137 VQNSNTNDGQFKSSSSK-NFRPRNVCNPQTSRIVCQLCGKMGHTAMKCFHRFDVYFQSPP 195

Query: 509 --------------ADTNKXXXXXXXXXXXTGQIIGASQQAYMAEFGGNVESGMRTYV-- 640
                             +            G ++ +       +   +  +    Y+  
Sbjct: 196 HAQNQQFSSLHQPQQPQLRPPPLHQPQYYSIGPLVPSRPIQNSHQQLDSTNTSPHAYIVA 255

Query: 641 ---DGEGNWYVDSGATVHITNDLSNLAVNSDYHGRENLMVGNG 760
              +   +W+VDSGAT H+T D + L V   Y G  N++VGNG
Sbjct: 256 PDLNSNTSWFVDSGATHHMTTDSNTLDVFDHYSGTGNVVVGNG 298


>gb|AAK02020.2|AC074283_1 Putative gag-pol polyprotein [Oryza sativa]
           gi|31430072|gb|AAP52036.1| retrotransposon protein,
           putative, Ty1-copia subclass [Oryza sativa Japonica
           Group]
          Length = 1058

 Score =  116 bits (291), Expect = 8e-24
 Identities = 83/253 (32%), Positives = 120/253 (47%)
 Frame = +2

Query: 2   SKAQIMR*RKQLQTTKKGSS*VEDYFMKLRSIADQLAAIGKPLDDDELLMYIMESFGP*Y 181
           S+A+++  R  L  TKKG+  V +Y  K++++AD++A+ GK LDD+EL+ YI+      Y
Sbjct: 85  SRARVINTRLALSNTKKGNRSVAEYVGKMKALADEMASAGKALDDEELVSYILAGLDFDY 144

Query: 182 ESLVVNIMQ*TEEPNLQEIQLAFQAYEIRLAQ*HQALIEHSANVVYRGRGQPSFGANVGG 361
            S+V  +   T+  ++ E+      +E RL     AL + SAN + RG      G   G 
Sbjct: 145 NSVVTTVTGRTDPISVNELYGLLVGFESRLELLQNAL-QASANAMSRG------GCGGGH 197

Query: 362 VYGTVNGRGMVVGRGSEPNFGKMLVCQLCGRTCHVALKCFKRFDIHFTCADTNKXXXXXX 541
             G  N RG   GRG      K   CQLCG+  H   KC+KRFD  FT  + +       
Sbjct: 198 GQGGNNNRGGGSGRGRGDGKPKP-TCQLCGKVGHTVAKCWKRFDPSFTREEKS------- 249

Query: 542 XXXXXTGQIIGASQQAYMAEFGGNVESGMRTYVDGEGNWYVDSGATVHITNDLSNLAVNS 721
                      A+  A  + +G +             NWYVDS AT HIT ++  L+V  
Sbjct: 250 -----------ANTAATSSSYGIDT------------NWYVDSNATDHITGEMEKLSVKD 286

Query: 722 DYHGRENLMVGNG 760
            YHG E +    G
Sbjct: 287 KYHGSEQVHNAGG 299


>emb|CAH67640.1| H0102C09.1 [Oryza sativa Indica Group]
          Length = 1825

 Score =  115 bits (289), Expect = 1e-23
 Identities = 77/259 (29%), Positives = 122/259 (47%), Gaps = 6/259 (2%)
 Frame = +2

Query: 2   SKAQIMR*RKQLQTTKKGSS*VEDYFMKLRSIADQLAAIGKPLDDDELLMYIMESFGP*Y 181
           ++A+ +  R  L T +KG+S + +Y  K++++AD++AA GKPLDD+EL+ YI+      +
Sbjct: 259 TRARSLNVRLALTTLQKGNSSISEYIGKMKTLADEVAAAGKPLDDEELIAYILNGLDEDF 318

Query: 182 ESLVVNIMQ*TEEPNLQEIQLAFQAYEIRLAQ*HQALIEHSANVVYR-GRGQPSFGANVG 358
           +S+V  I+   E   + E+     ++E RLA        + AN   R G G    GAN G
Sbjct: 319 DSVVSTIVGRVEPVTVAEVYSQLLSFENRLAMRQAQATANMANRGGRGGGGSRGGGANPG 378

Query: 359 GVYGTVNGRGMVVGRG-----SEPNFGKMLVCQLCGRTCHVALKCFKRFDIHFTCADTNK 523
              G   GRG   GRG      + ++    +CQ+C +  HVA  C+ RFD  F   D   
Sbjct: 379 RGRGATRGRGAAPGRGRGNNQQQRSYDNRPLCQVCYKRGHVAADCWHRFDEDFVPDD--- 435

Query: 524 XXXXXXXXXXXTGQIIGASQQAYMAEFGGNVESGMRTYVDGEGNWYVDSGATVHITNDLS 703
                        +++ A+   +                  + NWYVD+GAT HIT++L 
Sbjct: 436 -------------KLVAAAIHTHAR----------------DSNWYVDTGATDHITSELE 466

Query: 704 NLAVNSDYHGRENLMVGNG 760
            L     Y G + +   +G
Sbjct: 467 KLTARDVYKGHDQIHTASG 485


>emb|CAH67225.1| OSIGBa0145M07.7 [Oryza sativa Indica Group]
          Length = 1087

 Score =  114 bits (286), Expect = 3e-23
 Identities = 83/262 (31%), Positives = 118/262 (45%), Gaps = 10/262 (3%)
 Frame = +2

Query: 2   SKAQIMR*RKQLQTTKKGSS*VEDYFMKLRSIADQLAAIGKPLDDDELLMYIMESFGP*Y 181
           SKA+I++ R QL    KG S    YF K++ +AD++AA GK LDDD+++ YI+      Y
Sbjct: 113 SKARIIQIRAQLARELKGDSSAAAYFTKMKGLADEMAAAGKKLDDDDIVSYILGGLDADY 172

Query: 182 ESLVVNIMQ*TEEPNLQEIQLAFQAYEIRLAQ*HQALIEHSANVVY---------RGRGQ 334
             LV ++    +  +L ++     ++E  L    +     SAN            RGRG+
Sbjct: 173 NPLVASVSS-KDYISLSDLYAQLLSFEAHLNNQSEGGYHSSANSASRGGRGRGQGRGRGR 231

Query: 335 PSFGANVGGVYGTVNGRGMVVGRGSEPNFGKMLVCQLCGRTCHVALKCFKRFDIHFTCAD 514
             FG+N G  +G     G   G GS P+      CQLCG+  H    C+KRFD  F    
Sbjct: 232 GGFGSNFGSGFGGRGRGGRGRGDGSRPS------CQLCGKEGHTVHTCWKRFDRSF---- 281

Query: 515 TNKXXXXXXXXXXXTGQIIGASQQAYMAEFGGNVES-GMRTYVDGEGNWYVDSGATVHIT 691
                         +G  +   Q    A+    V S G+ T      NWY+D+ AT HIT
Sbjct: 282 --------------SGNDVIFQQHHQQAKSASAVSSYGVDT------NWYLDTAATDHIT 321

Query: 692 NDLSNLAVNSDYHGRENLMVGN 757
            +L  L     YHG E +   N
Sbjct: 322 GELKKLTTKERYHGNEQVHAAN 343


>emb|CAE05450.3| OSJNBa0073E02.10 [Oryza sativa Japonica Group]
          Length = 1131

 Score =  114 bits (286), Expect = 3e-23
 Identities = 83/262 (31%), Positives = 118/262 (45%), Gaps = 10/262 (3%)
 Frame = +2

Query: 2   SKAQIMR*RKQLQTTKKGSS*VEDYFMKLRSIADQLAAIGKPLDDDELLMYIMESFGP*Y 181
           SKA+I++ R QL    KG S    YF K++ +AD++AA GK LDDD+++ YI+      Y
Sbjct: 113 SKARIIQIRAQLARELKGDSSAAAYFTKMKGLADEMAAAGKKLDDDDIVSYILGGLDADY 172

Query: 182 ESLVVNIMQ*TEEPNLQEIQLAFQAYEIRLAQ*HQALIEHSANVVY---------RGRGQ 334
             LV ++    +  +L ++     ++E  L    +     SAN            RGRG+
Sbjct: 173 NPLVASVSS-KDYISLSDLYAQLLSFEAHLNNQSEGGYHSSANSASRGGRGRGQGRGRGR 231

Query: 335 PSFGANVGGVYGTVNGRGMVVGRGSEPNFGKMLVCQLCGRTCHVALKCFKRFDIHFTCAD 514
             FG+N G  +G     G   G GS P+      CQLCG+  H    C+KRFD  F    
Sbjct: 232 GGFGSNFGSGFGGRGRGGRGRGDGSRPS------CQLCGKEGHTVHTCWKRFDRSF---- 281

Query: 515 TNKXXXXXXXXXXXTGQIIGASQQAYMAEFGGNVES-GMRTYVDGEGNWYVDSGATVHIT 691
                         +G  +   Q    A+    V S G+ T      NWY+D+ AT HIT
Sbjct: 282 --------------SGNDVIFQQHHQQAKSASAVSSYGVDT------NWYLDTAATDHIT 321

Query: 692 NDLSNLAVNSDYHGRENLMVGN 757
            +L  L     YHG E +   N
Sbjct: 322 GELKKLTTKERYHGNEQVHAAN 343


>emb|CAN61322.1| hypothetical protein VITISV_012106 [Vitis vinifera]
          Length = 1432

 Score =  113 bits (282), Expect = 8e-23
 Identities = 87/267 (32%), Positives = 126/267 (47%), Gaps = 14/267 (5%)
 Frame = +2

Query: 2   SKAQIMR*RKQLQTTKKGSS*VEDYFMKLRSIADQLAAIGKPLDDDELLMYIMESFGP*Y 181
           S+A+IM+ R +LQ+TKKGS  + DY MK++  AD LAAIG+P+ + + +M ++   G  Y
Sbjct: 132 SRARIMQLRLELQSTKKGSMSMIDYIMKIKGAADNLAAIGEPVSEQDQVMNLLGGLGSDY 191

Query: 182 ESLVVNIMQ*TEEPNLQEIQLAFQAYEIRLAQ*HQALIEHSANVV----YRGRGQPSFGA 349
            ++V  I    ++ +L+ I     A+E RL Q   ++ + SAN       RG G+  F  
Sbjct: 192 NAVVTAINIRDDKISLEAIHSMLLAFEHRLEQ-QSSIEQMSANYASSSNNRGGGR-KFNG 249

Query: 350 NVGGVYGTVN--------GRGMVVGRGSEPNF--GKMLVCQLCGRTCHVALKCFKRFDIH 499
             G  Y   N        GRG   G+G   N    +   CQLCG+  H A  C+ RFDI 
Sbjct: 250 GRGQGYSPNNNNYTYRGRGRGGRNGQGGRQNSSPSEKPQCQLCGKFGHTAQICYHRFDIS 309

Query: 500 FTCADTNKXXXXXXXXXXXTGQIIGASQQAYMAEFGGNVESGMRTYVDGEGNWYVDSGAT 679
           F    T                I  +            V S      D   +WY+DSGA+
Sbjct: 310 FQGGQTT---------------ISHSLNNGNQNNIPAMVASASNNPAD--ESWYLDSGAS 352

Query: 680 VHITNDLSNLAVNSDYHGRENLMVGNG 760
            H+T +L NL   S Y G + + +GNG
Sbjct: 353 HHLTQNLGNLTSTSPYTGTDKVTIGNG 379


>gb|ABA94311.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
           Japonica Group]
          Length = 339

 Score =  112 bits (279), Expect = 2e-22
 Identities = 82/253 (32%), Positives = 114/253 (45%)
 Frame = +2

Query: 2   SKAQIMR*RKQLQTTKKGSS*VEDYFMKLRSIADQLAAIGKPLDDDELLMYIMESFGP*Y 181
           S+A+I   R  L  +KKGS+    YF K++ +AD LA+ GKP+DDDEL+ YI+      Y
Sbjct: 122 SRARITNLRISLTNSKKGSTTTAAYFSKMKGLADDLASAGKPIDDDELVSYILAGLDIDY 181

Query: 182 ESLVVNIMQ*TEEPNLQEIQLAFQAYEIRLAQ*HQALIEHSANVVYRGRGQPSFGANVGG 361
             LV  +M  + +  +  +Q   Q             I+ SAN  +RGRG  +      G
Sbjct: 182 NPLVSTVMV-SYDNRMDHLQGGGQ-------------IQSSANAAFRGRGNNNNNFRGRG 227

Query: 362 VYGTVNGRGMVVGRGSEPNFGKMLVCQLCGRTCHVALKCFKRFDIHFTCADTNKXXXXXX 541
             G   G G   GRG     G   VCQLCG+T H  +KC+ RFD  +             
Sbjct: 228 NGGCGRGNG---GRGGGQQ-GPRPVCQLCGKTGHTVIKCWYRFDQTY------------- 270

Query: 542 XXXXXTGQIIGASQQAYMAEFGGNVESGMRTYVDGEGNWYVDSGATVHITNDLSNLAVNS 721
                         +  +A    N   G+ T      NWYVD GAT HIT +L  L++  
Sbjct: 271 ------------QPEEKVAAAATNSAYGVDT------NWYVDCGATDHITGELDKLSIRE 312

Query: 722 DYHGRENLMVGNG 760
            Y+G + +   NG
Sbjct: 313 KYNGLDQVHATNG 325


>gb|ABA95367.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
           Japonica Group]
          Length = 807

 Score =  111 bits (277), Expect = 3e-22
 Identities = 83/278 (29%), Positives = 128/278 (46%), Gaps = 25/278 (8%)
 Frame = +2

Query: 2   SKAQIMR*RKQLQTTKKGSS*VEDYFMKLRSIADQLAAIGKPLDDDELLMYIMESFGP*Y 181
           ++A+ +  R  LQTT KG+  V +YF K++++AD++AA GK LD+++ + YI+      +
Sbjct: 78  TRARSLNTRLALQTTVKGTMSVSEYFGKMKALADEVAATGKRLDEEDFIAYILNGLDGEF 137

Query: 182 ESLVVNIMQ*TEEPNLQEIQLAFQAYEIRLAQ*HQALIE-HSAN---------------- 310
           +S+V  I   TE  ++ E+      +E RL    +     H+A+                
Sbjct: 138 DSVVSAIGMKTEPISVMEVYSQVLNFENRLKLRQEGTASAHAASRGRGGFNPRAGGFSGG 197

Query: 311 ---VVYRGRGQPSFGANV-GGVYGTVNGRGM----VVGRGSEPNFGKMLVCQLCGRTCHV 466
                 RGRG P+ GAN  GG  G  N RG        RG++       +CQ+C +  HV
Sbjct: 198 GGGGPGRGRGAPTGGANFPGGNGGGGNSRGRGYTPARNRGNQQRVDPRPICQVCYKRGHV 257

Query: 467 ALKCFKRFDIHFTCADTNKXXXXXXXXXXXTGQIIGASQQAYMAEFGGNVESGMRTYVDG 646
           A KC+ RFD ++   + +               +  A+Q AY                  
Sbjct: 258 AAKCWHRFDENYVPDERH---------------VAAAAQAAYAV---------------- 286

Query: 647 EGNWYVDSGATVHITNDLSNLAVNSDYHGRENLMVGNG 760
           + NWY+DSGAT HIT++L  L V   Y G E +   NG
Sbjct: 287 DTNWYIDSGATDHITSELDKLTVREKYKGTEKIHTANG 324


>gb|ACN32036.1| unknown [Zea mays]
          Length = 376

 Score =  110 bits (274), Expect = 7e-22
 Identities = 86/271 (31%), Positives = 124/271 (45%), Gaps = 18/271 (6%)
 Frame = +2

Query: 2   SKAQIMR*RKQLQTTKKGSS*VEDYFMKLRSIADQLAAIGKPLDDDELLMYIMESFGP*Y 181
           S+A+IM+ R QL T +KG     +YF K++ +AD LAA+GK L+D+E + Y++      Y
Sbjct: 132 SRARIMQIRMQLATIQKGDLTAAEYFRKVKRLADTLAAVGKRLEDEEFISYLLRGLPADY 191

Query: 182 ESLVVNIMQ*TEEPNLQEIQLAFQAYEIRLAQ*HQALIEHSANVVYRGRGQPSFGANVGG 361
           +SLV +I    +   + ++     ++E R  + H A+ + S+  V      PS G   GG
Sbjct: 192 DSLVTSITTRPDTYTISDVYAHLLSFETR-QEYHTAVGQISS--VNNANRVPSRG---GG 245

Query: 362 VYGTVNGRGMVVGRG----SEP--------------NFGKMLVCQLCGRTCHVALKCFKR 487
            +G  NGRG   GRG    S+P              N      CQ+CG+  H AL+C+ R
Sbjct: 246 AFGQ-NGRG---GRGRGGRSQPGRGNNRPPARPPSNNSSSSGTCQICGKGNHNALQCWHR 301

Query: 488 FDIHFTCADTNKXXXXXXXXXXXTGQIIGASQQAYMAEFGGNVESGMRTYVDGEGNWYVD 667
           FD                              QAY AE      +        + NWY+D
Sbjct: 302 FD------------------------------QAYQAESTVKQAAAATHEYAVDPNWYMD 331

Query: 668 SGATVHITNDLSNLAVNSDYHGRENLMVGNG 760
           SGAT HIT+DL  L     Y G + + V NG
Sbjct: 332 SGATDHITSDLERLTTRERYTGGDKIQVANG 362


>gb|EEE57553.1| hypothetical protein OsJ_07890 [Oryza sativa Japonica Group]
          Length = 499

 Score =  109 bits (273), Expect = 9e-22
 Identities = 80/260 (30%), Positives = 120/260 (46%), Gaps = 7/260 (2%)
 Frame = +2

Query: 2   SKAQIMR*RKQLQTTKKGSS*VEDYFMKLRSIADQLAAIGKPLDDDELLMYIMESFGP*Y 181
           S+A++M  R  L  TKKG+  V +Y  K+R +AD +A+ GK LDDD+++  I+      +
Sbjct: 6   SRARVMNTRMALTATKKGNLKVAEYVAKMRGLADDMASAGKKLDDDDIVSDILAGLDDDF 65

Query: 182 ESLVVNIMQ*TEEPNLQEIQLAFQAYEIRLAQ*HQALIEHSANVVY-------RGRGQPS 340
           + +V  + Q +E  ++ E+      +E RL +  Q  I+ S N          RG GQP+
Sbjct: 66  DPVVSAVAQRSEPISVGELFSQLVTFEQRL-ELRQGGIQSSTNSASRGGNGGGRGHGQPN 124

Query: 341 FGANVGGVYGTVNGRGMVVGRGSEPNFGKMLVCQLCGRTCHVALKCFKRFDIHFTCADTN 520
            G N+    G   G+G   G  +    G    CQLC +  H  +KC+KRFD  FT     
Sbjct: 125 QGQNLNRGRG---GQGRGRGGFTNNQGGDHPKCQLCDKLGHTVVKCYKRFDASFT----- 176

Query: 521 KXXXXXXXXXXXTGQIIGASQQAYMAEFGGNVESGMRTYVDGEGNWYVDSGATVHITNDL 700
                            G  + A  A     V +          NWY+D+GAT HIT+DL
Sbjct: 177 -----------------GEEKSAAAATSSYGVGT----------NWYIDTGATDHITSDL 209

Query: 701 SNLAVNSDYHGRENLMVGNG 760
             L V   Y+G + +   +G
Sbjct: 210 DKLTVREKYNGGDQVHTASG 229


>dbj|BAG98101.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 572

 Score =  109 bits (273), Expect = 9e-22
 Identities = 80/260 (30%), Positives = 120/260 (46%), Gaps = 7/260 (2%)
 Frame = +2

Query: 2   SKAQIMR*RKQLQTTKKGSS*VEDYFMKLRSIADQLAAIGKPLDDDELLMYIMESFGP*Y 181
           S+A++M  R  L  TKKG+  V +Y  K+R +AD +A+ GK LDDD+++  I+      +
Sbjct: 79  SRARVMNTRMALTATKKGNLKVAEYVAKMRGLADDMASAGKKLDDDDIVSDILAGLDDDF 138

Query: 182 ESLVVNIMQ*TEEPNLQEIQLAFQAYEIRLAQ*HQALIEHSANVVY-------RGRGQPS 340
           + +V  + Q +E  ++ E+      +E RL +  Q  I+ S N          RG GQP+
Sbjct: 139 DPVVSAVAQRSEPISVGELFSQLVTFEQRL-ELRQGGIQSSTNSASRGGNGGGRGHGQPN 197

Query: 341 FGANVGGVYGTVNGRGMVVGRGSEPNFGKMLVCQLCGRTCHVALKCFKRFDIHFTCADTN 520
            G N+    G   G+G   G  +    G    CQLC +  H  +KC+KRFD  FT     
Sbjct: 198 QGQNLNRGRG---GQGRGRGGFTNNQGGDHPKCQLCDKLGHTVVKCYKRFDASFT----- 249

Query: 521 KXXXXXXXXXXXTGQIIGASQQAYMAEFGGNVESGMRTYVDGEGNWYVDSGATVHITNDL 700
                            G  + A  A     V +          NWY+D+GAT HIT+DL
Sbjct: 250 -----------------GEEKSAAAATSSYGVGT----------NWYIDTGATDHITSDL 282

Query: 701 SNLAVNSDYHGRENLMVGNG 760
             L V   Y+G + +   +G
Sbjct: 283 DKLTVREKYNGGDQVHTASG 302


>emb|CAN59952.1| hypothetical protein VITISV_006720 [Vitis vinifera]
          Length = 1365

 Score =  108 bits (271), Expect = 2e-21
 Identities = 80/270 (29%), Positives = 122/270 (45%), Gaps = 17/270 (6%)
 Frame = +2

Query: 2   SKAQIMR*RKQLQTTKKGSS*VEDYFMKLRSIADQLAAIGKPLDDDELLMYIMESFGP*Y 181
           S+A+IM+ R + Q+TKKGS  + DY MK++  AD LAAIG+P+ + + +M ++   G  Y
Sbjct: 129 SRARIMQLRLEFQSTKKGSMSMIDYIMKVKGAADSLAAIGEPVSEQDQIMNLLGGLGSDY 188

Query: 182 ESLVVNIMQ*TEEPNLQEIQLAFQAYEIRLAQ*HQALIEH----SANVV----------- 316
            ++V  I    ++ +L+ +     A+E RL Q  Q  IE     SAN             
Sbjct: 189 NAVVTAINIREDKISLEAVHSMLLAFEQRLEQ--QGSIEQLPAMSANYASSSNNRGGGRK 246

Query: 317 YRGRGQPSFGANVGGVYGTVNGRGMVVGRGSEPN--FGKMLVCQLCGRTCHVALKCFKRF 490
           Y G   P+F        G   GRG   G+    N    +   CQLCG+  H    C+ RF
Sbjct: 247 YNGGRGPNFMMTNSNFRG--RGRGGRYGQSGRQNSSSSERPQCQLCGKFGHTVQVCYHRF 304

Query: 491 DIHFTCADTNKXXXXXXXXXXXTGQIIGASQQAYMAEFGGNVESGMRTYVDGEGNWYVDS 670
           DI F     N               ++ +S                      + NWY+DS
Sbjct: 305 DITFQSTQNNTTGVSNSGNSNSMPAMVASSNNL------------------ADDNWYLDS 346

Query: 671 GATVHITNDLSNLAVNSDYHGRENLMVGNG 760
           GA+ H+T +++NL   + Y G + + +GNG
Sbjct: 347 GASHHLTQNVANLTNATPYTGADKVTIGNG 376


>pir||T02087 gag/pol polyprotein - maize retrotransposon Hopscotch
           gi|531389|gb|AAA57005.1| copia-like retrotransposon
           Hopscotch polyprotein [Zea mays]
          Length = 1439

 Score =  108 bits (270), Expect = 2e-21
 Identities = 81/269 (30%), Positives = 123/269 (45%), Gaps = 16/269 (5%)
 Frame = +2

Query: 2   SKAQIMR*RKQLQTTKKGSS*VEDYFMKLRSIADQLAAIGKPLDDDELLMYIMESFGP*Y 181
           S+A+ +  R  L TTKKG+S V +YF K+R  AD+L A GKPLDD+E + +++      +
Sbjct: 122 SRARKVNTRIALATTKKGASSVAEYFAKMRGFADELGAAGKPLDDEEFVSFLLTGLDEDF 181

Query: 182 ESLVVNIMQ*TEEPNLQEIQLAFQAYEIR--LAQ*HQALIEHSANVVYRGRGQPSFGANV 355
             LV  ++  ++     ++     +YE R  L     +L++ SAN    GRG  S+G + 
Sbjct: 182 NPLVTAVVARSDPITPGDLYTQLLSYENRMHLQTGSSSLMQSSANARSPGRGM-SWGRSG 240

Query: 356 GGVYGTVNGRGMVVGRGSEPNFGK--------------MLVCQLCGRTCHVALKCFKRFD 493
           G  +    GRG    RG   +FG+                 CQ+C R  H AL C+ RFD
Sbjct: 241 GRGFSRGRGRGRGPSRGGFQSFGRGNNYSGATDADTSSRPRCQVCSRVGHTALNCWYRFD 300

Query: 494 IHFTCADTNKXXXXXXXXXXXTGQIIGASQQAYMAEFGGNVESGMRTYVDGEGNWYVDSG 673
            ++     +                  A+  A+  + G NV             WY D+G
Sbjct: 301 ENYVPDQRS------------------ANSAAH--QNGSNVP------------WYTDTG 328

Query: 674 ATVHITNDLSNLAVNSDYHGRENLMVGNG 760
           AT HIT DL  L ++  Y G + ++  NG
Sbjct: 329 ATDHITGDLDRLTMHDKYTGTDQIIAANG 357


>gb|ACL54615.1| unknown [Zea mays]
          Length = 376

 Score =  108 bits (270), Expect = 2e-21
 Identities = 85/271 (31%), Positives = 123/271 (45%), Gaps = 18/271 (6%)
 Frame = +2

Query: 2   SKAQIMR*RKQLQTTKKGSS*VEDYFMKLRSIADQLAAIGKPLDDDELLMYIMESFGP*Y 181
           S+ +IM+ R QL T +KG     +YF K++ +AD LAA+GK L+D+E + Y++      Y
Sbjct: 132 SRVRIMQIRMQLATIQKGDLTAAEYFRKVKRLADTLAAVGKRLEDEEFISYLLRGLPADY 191

Query: 182 ESLVVNIMQ*TEEPNLQEIQLAFQAYEIRLAQ*HQALIEHSANVVYRGRGQPSFGANVGG 361
           +SLV +I    +   + ++     ++E R  + H A+ + S+  V      PS G   GG
Sbjct: 192 DSLVTSITTRPDTYTISDVYAHLLSFETR-QEYHTAVGQISS--VNNANRVPSRG---GG 245

Query: 362 VYGTVNGRGMVVGRG----SEP--------------NFGKMLVCQLCGRTCHVALKCFKR 487
            +G  NGRG   GRG    S+P              N      CQ+CG+  H AL+C+ R
Sbjct: 246 AFGQ-NGRG---GRGRGGRSQPGRGNNRPPARPPSNNSSSSGTCQICGKGNHNALQCWHR 301

Query: 488 FDIHFTCADTNKXXXXXXXXXXXTGQIIGASQQAYMAEFGGNVESGMRTYVDGEGNWYVD 667
           FD                              QAY AE      +        + NWY+D
Sbjct: 302 FD------------------------------QAYQAESTVKQAAAATHEYAVDPNWYMD 331

Query: 668 SGATVHITNDLSNLAVNSDYHGRENLMVGNG 760
           SGAT HIT+DL  L     Y G + + V NG
Sbjct: 332 SGATDHITSDLERLTTRERYTGGDKIQVANG 362


>gb|ABG00000.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 2074

 Score =  108 bits (270), Expect = 2e-21
 Identities = 80/266 (30%), Positives = 121/266 (45%), Gaps = 13/266 (4%)
 Frame = +2

Query: 2    SKAQIMR*RKQLQTTKKGSS*VEDYFMKLRSIADQLAAIGKPLDDDELLMYIMESFGP*Y 181
            S+A+ +  R  L TT+KG   V +Y  K++++AD++++ GKPLDD+E++ YI+      Y
Sbjct: 1085 SRARALNTRLALSTTRKGDLSVTEYIGKMKTLADEMSSAGKPLDDEEMMSYILPGLDDDY 1144

Query: 182  ESLVVNIMQ*TEEPNLQEIQLAFQAYEIRLAQ*HQALIEHSANVVYRG--RGQPSFGANV 355
            E +V  ++   E   + EI     ++E R A+  Q     S N   RG   G   F  NV
Sbjct: 1145 EPVVSTLVGKAEAVPVAEIYTQLLSFESR-AKLRQQANGSSVNSARRGGKGGGGGFSNNV 1203

Query: 356  -----------GGVYGTVNGRGMVVGRGSEPNFGKMLVCQLCGRTCHVALKCFKRFDIHF 502
                       GG  G   GRG   G G+  +      CQLCG+  HV   C+ R+D +F
Sbjct: 1204 NTGNTGAFRGRGGGRGDRGGRGRGNGGGARFSNKPRSTCQLCGKIGHVVADCWYRYDENF 1263

Query: 503  TCADTNKXXXXXXXXXXXTGQIIGASQQAYMAEFGGNVESGMRTYVDGEGNWYVDSGATV 682
                                  I  S+ A  A +G +             NWY+D+GAT 
Sbjct: 1264 ----------------------IPDSKTAAAASYGVDT------------NWYMDTGATD 1289

Query: 683  HITNDLSNLAVNSDYHGRENLMVGNG 760
            HIT +L  L  +  Y+G+E +   +G
Sbjct: 1290 HITGELDKLTTHEKYNGKEQIHTASG 1315


>gb|AAP21398.1| putative gag-pol polyprotein [Oryza sativa Japonica Group]
          Length = 461

 Score =  108 bits (270), Expect = 2e-21
 Identities = 80/266 (30%), Positives = 121/266 (45%), Gaps = 13/266 (4%)
 Frame = +2

Query: 2   SKAQIMR*RKQLQTTKKGSS*VEDYFMKLRSIADQLAAIGKPLDDDELLMYIMESFGP*Y 181
           S+A+ +  R  L TT+KG   V +Y  K++++AD++++ GKPLDD+E++ YI+      Y
Sbjct: 6   SRARALNTRLALSTTRKGDLSVTEYIGKMKTLADEMSSAGKPLDDEEMMSYILPGLDDDY 65

Query: 182 ESLVVNIMQ*TEEPNLQEIQLAFQAYEIRLAQ*HQALIEHSANVVYRG--RGQPSFGANV 355
           E +V  ++   E   + EI     ++E R A+  Q     S N   RG   G   F  NV
Sbjct: 66  EPVVSTLVGKAEAVPVAEIYTQLLSFESR-AKLRQQANGSSVNSARRGGKGGGGGFSNNV 124

Query: 356 -----------GGVYGTVNGRGMVVGRGSEPNFGKMLVCQLCGRTCHVALKCFKRFDIHF 502
                      GG  G   GRG   G G+  +      CQLCG+  HV   C+ R+D +F
Sbjct: 125 NTGNTGAFRGRGGGRGDRGGRGRGNGGGARFSNKPRSTCQLCGKIGHVVADCWYRYDENF 184

Query: 503 TCADTNKXXXXXXXXXXXTGQIIGASQQAYMAEFGGNVESGMRTYVDGEGNWYVDSGATV 682
                                 I  S+ A  A +G +             NWY+D+GAT 
Sbjct: 185 ----------------------IPDSKTAAAASYGVDT------------NWYMDTGATD 210

Query: 683 HITNDLSNLAVNSDYHGRENLMVGNG 760
           HIT +L  L  +  Y+G+E +   +G
Sbjct: 211 HITGELDKLTTHEKYNGKEQIHTASG 236


>emb|CAN77775.1| hypothetical protein VITISV_021887 [Vitis vinifera]
          Length = 735

 Score =  107 bits (267), Expect = 5e-21
 Identities = 79/279 (28%), Positives = 125/279 (44%), Gaps = 33/279 (11%)
 Frame = +2

Query: 2   SKAQIMR*RKQLQTTKKGSS*VEDYFMKLRSIADQLAAIGKPLDDDELLMYIMESFGP*Y 181
           SKA+ ++ R  LQ+ KKG+  + DY +K+R+IAD L+  GKP+  ++L++YI+   GP +
Sbjct: 125 SKARTLQLRFMLQSLKKGALSINDYVLKMRNIADMLSTSGKPVPYEDLILYILGGLGPEF 184

Query: 182 ESLVVNIMQ*TEEPNLQEIQLAFQAYEIRLAQ*HQALIEHSANVVYRGRGQPSFGANVGG 361
           E++VVNI   +E  +LQE+    Q++EIRL Q   A +             P+     GG
Sbjct: 185 ETIVVNITSRSEAISLQEVHYLLQSHEIRLEQLSVASVIDV---------PPAAHTITGG 235

Query: 362 VYGTVNGRGMVVGRGSEPNF---------GKMLVCQLCGRTCHVALKCFKRFDIHFTCAD 514
           V  +    G   G  S  NF            +V QLCG+  H A+KCF  FD++F    
Sbjct: 236 VQNSNTNDGQFRG-SSNRNFRPRNVRNPQTSRIVYQLCGKMGHTAMKCFHHFDVYFQSPP 294

Query: 515 TNK-------------------XXXXXXXXXXXTGQIIGASQQAYMAEFGGNVESGMRTY 637
             +                              TG ++ +       +   +  +    Y
Sbjct: 295 RAQNQQFSSLHQSQQPQLQPPPLQPQMQPQYYSTGPLVPSRPIQNSHQQHDSTNTSHHAY 354

Query: 638 V-----DGEGNWYVDSGATVHITNDLSNLAVNSDYHGRE 739
           +     D   +W+  SGAT H+T D + L V+  Y G +
Sbjct: 355 IVTPDLDSNTSWFFVSGATHHMTTDSNTLDVSDHYFGTD 393


>gb|AAU10682.1| putative polyprotein [Oryza sativa Japonica Group]
          Length = 1210

 Score =  107 bits (266), Expect = 6e-21
 Identities = 79/263 (30%), Positives = 116/263 (44%), Gaps = 10/263 (3%)
 Frame = +2

Query: 2   SKAQIMR*RKQLQTTKKGSS*VEDYFMKLRSIADQLAAIGKPLDDDELLMYIMESFGP*Y 181
           S+A+ +  R  L TT+KG S V DY  K++++AD++A+ GKPLDD+E   YI+      Y
Sbjct: 123 SRARALNTRIALATTQKGESSVSDYISKMKTLADEMASAGKPLDDEEFTSYILAGLDSDY 182

Query: 182 ESLVVNIMQ*TEEPNLQEIQLAFQAYEIRLAQ*HQALIEHSANVVYRGRGQPSFGA-NVG 358
           E +V +I+  +E   + E+     ++E        +    S N    GR     G  N G
Sbjct: 183 EQVVSSIVGRSEGVTISEVYSQLLSFEELWQTNGSSGSYSSVNSANHGRNNGGGGNFNNG 242

Query: 359 GVYGTVNGRGMVVGRGSEP---------NFGKMLVCQLCGRTCHVALKCFKRFDIHFTCA 511
           G Y +  GRG   GRG            NF     CQLC +  HV   C+  +D  F   
Sbjct: 243 GGYFSNRGRGG--GRGDRGGCGRGNGGRNFKPRPTCQLCSKVGHVVADCWHCYDDSF--- 297

Query: 512 DTNKXXXXXXXXXXXTGQIIGASQQAYMAEFGGNVESGMRTYVDGEGNWYVDSGATVHIT 691
                              +  ++ A  A +G             + NWYVD+GAT HIT
Sbjct: 298 -------------------VPDARVAAAASYGV------------DSNWYVDTGATDHIT 326

Query: 692 NDLSNLAVNSDYHGRENLMVGNG 760
           N+L  L     Y+G+E +   +G
Sbjct: 327 NELEKLTTRDRYNGKEQIHTASG 349


>emb|CAN81355.1| hypothetical protein VITISV_039158 [Vitis vinifera]
          Length = 1402

 Score =  106 bits (265), Expect = 8e-21
 Identities = 80/270 (29%), Positives = 121/270 (44%), Gaps = 17/270 (6%)
 Frame = +2

Query: 2   SKAQIMR*RKQLQTTKKGSS*VEDYFMKLRSIADQLAAIGKPLDDDELLMYIMESFGP*Y 181
           S+A+IM+   + Q+TKKGS  + DY MK++  AD LAAIG+P+ + + +M ++   G  Y
Sbjct: 129 SRARIMQLXLEFQSTKKGSMSMIDYIMKVKGAADSLAAIGEPVSEQDQIMNLLGGLGSDY 188

Query: 182 ESLVVNIMQ*TEEPNLQEIQLAFQAYEIRLAQ*HQALIEH----SANVV----------- 316
            ++V  I    ++ +L+ +     A+E RL Q  Q  IE     SAN             
Sbjct: 189 NAVVTAINIREDKISLEAVHSMLLAFEQRLEQ--QGSIEQLPAMSANYASXSNNRGGGRK 246

Query: 317 YRGRGQPSFGANVGGVYGTVNGRGMVVGRGSEPN--FGKMLVCQLCGRTCHVALKCFKRF 490
           Y G   P+F        G   GRG   G+    N    +   CQLCG+  H    C+ RF
Sbjct: 247 YNGGRGPNFMMTNSNFRG--RGRGXRYGQSGRQNSSSSERPQCQLCGKFGHTVQVCYHRF 304

Query: 491 DIHFTCADTNKXXXXXXXXXXXTGQIIGASQQAYMAEFGGNVESGMRTYVDGEGNWYVDS 670
           DI F     N               ++  S                      + NWY+DS
Sbjct: 305 DITFQSTQNNTTGVSNSGNSNXMPAMVAXSNN------------------XADDNWYLDS 346

Query: 671 GATVHITNDLSNLAVNSDYHGRENLMVGNG 760
           GA+ H+T +++NL   + Y G + + +GNG
Sbjct: 347 GASHHLTQNVANLTNATPYTGADKVTIGNG 376


>emb|CAD40946.1| OSJNBa0027G07.12 [Oryza sativa Japonica Group]
          Length = 501

 Score =  106 bits (265), Expect = 8e-21
 Identities = 79/254 (31%), Positives = 120/254 (47%), Gaps = 16/254 (6%)
 Frame = +2

Query: 26  RKQLQTTKKGSS*VEDYFMKLRSIADQLAAIGKPLDDDELLMYIMESFGP*YESLVVNIM 205
           R  LQTT KG+  + +YF K++ ++D +AA GKPLD+++L+ YI+      Y+S+V  I 
Sbjct: 280 RLALQTTLKGAMSITEYFGKMKVLSDDIAATGKPLDEEDLIAYILNGLDGDYDSVVSAIG 339

Query: 206 Q*TEEPNLQEIQLAFQAYEIRLAQ*HQALIEHSANVVYRGRGQ--PSFGANVGGVYGTVN 379
             +E  ++ E+      +E RL    + +   +A+   RGRG   P  G N GG  G+  
Sbjct: 340 MKSEPISVMEVYSQLLNFENRLQLKQEGIA--AAHAASRGRGGFIPRSGGNGGGSGGSGR 397

Query: 380 GR-------------GMVVGRG-SEPNFGKMLVCQLCGRTCHVALKCFKRFDIHFTCADT 517
           GR              M  GRG  +       +CQ+C +  HVA +C+ RFD ++   D 
Sbjct: 398 GRSAPPANNGGRGRGNMPRGRGQQQQRTDPRPICQVCYKRGHVAAECWHRFDENYVPDDR 457

Query: 518 NKXXXXXXXXXXXTGQIIGASQQAYMAEFGGNVESGMRTYVDGEGNWYVDSGATVHITND 697
           +               +  A+Q +  A                + NWY+DSGAT HIT++
Sbjct: 458 H---------------VAAAAQASSYAI---------------DTNWYIDSGATNHITSE 487

Query: 698 LSNLAVNSDYHGRE 739
           L  LAV   Y G E
Sbjct: 488 LDKLAVREKYKGPE 501