BLASTX nr result

ID: Mentha29_contig00024876 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Mentha29_contig00024876
         (641 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CAA31653.1| polyprotein [Arabidopsis thaliana]                     63   7e-08
emb|CAB75481.1| copia-like polyprotein [Arabidopsis thaliana]          62   1e-07
gb|AAD32759.1| putative retroelement pol polyprotein [Arabidopsi...    62   1e-07
gb|AAF19226.1|AC007505_2 Highly similar to Ta1-3 polyprotein [Ar...    62   1e-07
pir||S23319 hypothetical protein 2 - Arabidopsis thaliana retrot...    62   2e-07
emb|CAA20201.1| putative transposable element [Arabidopsis thali...    61   3e-07
emb|CAN61272.1| hypothetical protein VITISV_039063 [Vitis vinifera]    60   4e-07
gb|AAD36943.1|AF069441_3 putative polyprotein [Arabidopsis thali...    60   7e-07
gb|AAD23690.1| putative retroelement pol polyprotein [Arabidopsi...    59   1e-06
emb|CAN69998.1| hypothetical protein VITISV_006839 [Vitis vinifera]    57   4e-06
gb|AAK38381.1|AC079028_5 polyprotein, putative [Arabidopsis thal...    57   4e-06
emb|CAN66898.1| hypothetical protein VITISV_037436 [Vitis vinifera]    57   6e-06
emb|CAN65235.1| hypothetical protein VITISV_040876 [Vitis vinifera]    57   6e-06
emb|CAB40039.1| putative retrotransposon [Arabidopsis thaliana] ...    57   6e-06
emb|CAN71109.1| hypothetical protein VITISV_001479 [Vitis vinifera]    56   8e-06
emb|CAN61630.1| hypothetical protein VITISV_003191 [Vitis vinifera]    56   8e-06

>emb|CAA31653.1| polyprotein [Arabidopsis thaliana]
          Length = 1291

 Score = 63.2 bits (152), Expect = 7e-08
 Identities = 34/92 (36%), Positives = 54/92 (58%), Gaps = 7/92 (7%)
 Frame = +1

Query: 289 LDSCEECILRKSKKLPYAMGKQSSSLVLDYVHYKGLWRLSRIAQ*VEEDTSSLYF----- 453
           LD CE C++ K+KK+ + +GK +S  VL YVH   LW  + +   +   + + YF     
Sbjct: 479 LDFCENCVMGKAKKVSFNVGKHNSEDVLRYVH-ADLWGSTNVTPSL---SGNKYFLSIID 534

Query: 454 --SRKLWVYILKNKADAFIRFVEWYNEVENEK 543
             +RK+W+Y L++K + F RF EW   VEN++
Sbjct: 535 DKTRKVWLYFLRSKDETFDRFCEWKELVENQQ 566


>emb|CAB75481.1| copia-like polyprotein [Arabidopsis thaliana]
          Length = 1363

 Score = 62.4 bits (150), Expect = 1e-07
 Identities = 34/102 (33%), Positives = 55/102 (53%), Gaps = 4/102 (3%)
 Frame = +1

Query: 247 ITKKRNSEKSMPFKLDSCEECILRKSKKLPYAMGKQSSSLVLDYVHYKGLWRLSRIAQ*V 426
           + KK   +K     LD+CE+CI  ++KK+ + + +  +   L+YVH   LW    +   +
Sbjct: 463 LIKKGFLDKKKVSMLDTCEDCIYGRAKKIGFNLAQHDTKKKLEYVH-SDLWGAPTVPMSL 521

Query: 427 EEDTSSLYF----SRKLWVYILKNKADAFIRFVEWYNEVENE 540
                 + F    +RK+WVY LK K +AF +FV W + VEN+
Sbjct: 522 GNCQYFISFIDDYTRKVWVYFLKTKDEAFEKFVSWISLVENQ 563


>gb|AAD32759.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
          Length = 1356

 Score = 62.4 bits (150), Expect = 1e-07
 Identities = 38/116 (32%), Positives = 59/116 (50%), Gaps = 13/116 (11%)
 Frame = +1

Query: 232 HQRL*ITKKRNSE---------KSMPFKLDSCEECILRKSKKLPYAMGKQSSSLVLDYVH 384
           HQRL    ++N E         K     LD CE+CI  K+K+  +++    +   L+Y+H
Sbjct: 442 HQRLCHMSQKNMEILVRKGFLDKKKVSSLDVCEDCIYGKAKRKSFSLAHHDTKEKLEYIH 501

Query: 385 YKGLWRLSRIAQ*VEEDTSSLY----FSRKLWVYILKNKADAFIRFVEWYNEVENE 540
              LW    +   + +    +     F+RK+WVY +K K +AF +FVEW N VEN+
Sbjct: 502 -SDLWGAPFVPLSLGKCQYFMSIIDDFTRKVWVYFMKTKDEAFEKFVEWVNLVENQ 556


>gb|AAF19226.1|AC007505_2 Highly similar to Ta1-3 polyprotein [Arabidopsis thaliana]
          Length = 1356

 Score = 62.0 bits (149), Expect = 1e-07
 Identities = 33/92 (35%), Positives = 52/92 (56%), Gaps = 7/92 (7%)
 Frame = +1

Query: 286 KLDSCEECILRKSKKLPYAMGKQSSSLVLDYVHYKGLWRLSRIAQ*VEEDTSSLYF---- 453
           +L+ CE C++ KSKK+ + +GK +S   L YVH   LW    +   +   +   YF    
Sbjct: 468 ELEFCEHCVMGKSKKVSFNVGKHTSEDALSYVH-ADLWGSPNVTPSI---SGKQYFLSII 523

Query: 454 ---SRKLWVYILKNKADAFIRFVEWYNEVENE 540
              +RK+W+Y LK+K + F +F EW + VEN+
Sbjct: 524 DDKTRKVWLYFLKSKDETFDKFCEWKSLVENQ 555


>pir||S23319 hypothetical protein 2 - Arabidopsis thaliana retrotransposon Ta1-2
           (strain Landsberg) (fragment) gi|16384|emb|CAA37924.1|
           unnamed protein product [Arabidopsis thaliana]
          Length = 1084

 Score = 61.6 bits (148), Expect = 2e-07
 Identities = 34/93 (36%), Positives = 54/93 (58%), Gaps = 7/93 (7%)
 Frame = +1

Query: 286 KLDSCEECILRKSKKLPYAMGKQSSSLVLDYVHYKGLWRLSRIAQ*VEEDTSSLYF---- 453
           +LD CE C++ K+KK+ + MGK +S  VL YVH   LW  + +   +   + + YF    
Sbjct: 378 ELDFCENCVMGKAKKVSFNMGKHNSEYVLSYVH-ADLWGSTNVTPSL---SGNKYFLSII 433

Query: 454 ---SRKLWVYILKNKADAFIRFVEWYNEVENEK 543
              +RK+W+Y L++K + F RF E    VEN++
Sbjct: 434 DDKTRKVWLYFLRSKDETFDRFCERKELVENQQ 466


>emb|CAA20201.1| putative transposable element [Arabidopsis thaliana]
           gi|7268932|emb|CAB79135.1| putative transposable element
           [Arabidopsis thaliana]
          Length = 1308

 Score = 61.2 bits (147), Expect = 3e-07
 Identities = 35/98 (35%), Positives = 51/98 (52%)
 Frame = +1

Query: 247 ITKKRNSEKSMPFKLDSCEECILRKSKKLPYAMGKQSSSLVLDYVHYKGLWRLSRIAQ*V 426
           + +K   EK    +L  CE C++ KSKKL + +GK  +  VL Y+H   LW        +
Sbjct: 456 LAEKGLLEKKDIKELSFCENCVMGKSKKLSFNVGKHITDEVLGYIH-ADLWGKQYFLSII 514

Query: 427 EEDTSSLYFSRKLWVYILKNKADAFIRFVEWYNEVENE 540
           ++       SRK+W+  LK K + F RF EW   VEN+
Sbjct: 515 DDK------SRKVWLMFLKTKDETFERFCEWKELVENQ 546


>emb|CAN61272.1| hypothetical protein VITISV_039063 [Vitis vinifera]
          Length = 1643

 Score = 60.5 bits (145), Expect = 4e-07
 Identities = 34/90 (37%), Positives = 50/90 (55%), Gaps = 7/90 (7%)
 Frame = +1

Query: 286  KLDSCEECILRKSKKLPYAMGKQSSSLVLDYVHYKGLWRLSRIAQ*VEEDTSSLY----- 450
            KL  CE C++ K +++ ++MG  +++ VL+Y+H   LW  S     VE  +   Y     
Sbjct: 776  KLKFCETCVMGKQRRVKFSMGSHTTNGVLEYIH-SDLWGPSP----VESHSGCRYYVTFI 830

Query: 451  --FSRKLWVYILKNKADAFIRFVEWYNEVE 534
              FSRK+WVY LK K + F +F EW   VE
Sbjct: 831  DDFSRKVWVYFLKAKDEVFGKFKEWKTMVE 860


>gb|AAD36943.1|AF069441_3 putative polyprotein [Arabidopsis thaliana]
           gi|7267195|emb|CAB77906.1| putative polyprotein
           [Arabidopsis thaliana]
          Length = 778

 Score = 59.7 bits (143), Expect = 7e-07
 Identities = 35/102 (34%), Positives = 54/102 (52%), Gaps = 4/102 (3%)
 Frame = +1

Query: 247 ITKKRNSEKSMPFKLDSCEECILRKSKKLPYAMGKQSSSLVLDYVHYKGLWRLSRIAQ*V 426
           + KK   +K     LD+CE+CI  K+KK+ +   +  +   L+YVHY  LW    +   +
Sbjct: 346 LVKKGFLDKKKVSMLDTCEDCIYGKAKKIGFNFAQHDTKEKLEYVHY-DLWGAPTMPMAL 404

Query: 427 EEDTSSLYF----SRKLWVYILKNKADAFIRFVEWYNEVENE 540
                 + F    +RK+ VY LK K +AF +FV W + VEN+
Sbjct: 405 GNCQYFISFIDDHTRKVCVYFLKTKDEAFEKFVSWISLVENQ 446


>gb|AAD23690.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
          Length = 1333

 Score = 59.3 bits (142), Expect = 1e-06
 Identities = 34/102 (33%), Positives = 57/102 (55%), Gaps = 4/102 (3%)
 Frame = +1

Query: 247 ITKKRNSEKSMPFKLDSCEECILRKSKKLPYAMGKQSSSLVLDYVHYKGLWRLSRIAQ*V 426
           + KK   +K    KL++CE+CI  K+K++ + + +  +   L+YVH   LW    +   +
Sbjct: 434 LLKKGLLDKKKVSKLETCEDCIYGKAKRIGFNLAQHDTREKLEYVH-SDLWGAPSVPFSL 492

Query: 427 EEDTSSLYF----SRKLWVYILKNKADAFIRFVEWYNEVENE 540
            +    + F    +RK+ +Y LK K +AF +FVEW N VEN+
Sbjct: 493 GKCQYFISFIDDYTRKVRIYFLKTKDEAFDKFVEWANLVENQ 534


>emb|CAN69998.1| hypothetical protein VITISV_006839 [Vitis vinifera]
          Length = 1211

 Score = 57.4 bits (137), Expect = 4e-06
 Identities = 40/98 (40%), Positives = 52/98 (53%), Gaps = 8/98 (8%)
 Frame = +1

Query: 271 KSMPFKLDSCEECILRKSKKLPYAM-GKQSSSLVLDYVHYKGLWRLSRIAQ*VEEDTSSL 447
           KS+ F  D CE CIL K KK+ +   G+ S +  L+ VH   LW  S +A        S 
Sbjct: 379 KSIDF--DMCESCILGKQKKVSFLKTGRTSKAEKLELVH-TDLWGPSPVASL----GGSR 431

Query: 448 YF-------SRKLWVYILKNKADAFIRFVEWYNEVENE 540
           Y+       SRK+WVY LKNK+D F+ F +W   VE E
Sbjct: 432 YYITFIDDSSRKVWVYFLKNKSDVFVTFKKWKVMVETE 469


>gb|AAK38381.1|AC079028_5 polyprotein, putative [Arabidopsis thaliana]
          Length = 855

 Score = 57.4 bits (137), Expect = 4e-06
 Identities = 30/88 (34%), Positives = 49/88 (55%), Gaps = 4/88 (4%)
 Frame = +1

Query: 289 LDSCEECILRKSKKLPYAMGKQSSSLVLDYVHYKGLWRLSRIAQ*VEEDTSSLYF----S 456
           L+  E C++ K+KK+ + +GK +S  +L YVH   LW    +   +  +   L      S
Sbjct: 152 LEFYEHCVMGKAKKVSFNIGKHNSEEILSYVH-ADLWGSQNVTPSMSGNKYFLSIIDDKS 210

Query: 457 RKLWVYILKNKADAFIRFVEWYNEVENE 540
           RK+W+Y L++K + F +F EW   VEN+
Sbjct: 211 RKVWLYFLRSKDETFDKFCEWKELVENQ 238


>emb|CAN66898.1| hypothetical protein VITISV_037436 [Vitis vinifera]
          Length = 1183

 Score = 56.6 bits (135), Expect = 6e-06
 Identities = 42/108 (38%), Positives = 54/108 (50%), Gaps = 8/108 (7%)
 Frame = +1

Query: 271 KSMPFKLDSCEECILRKSKKLPYAM-GKQSSSLVLDYVHYKGLWRLSRIAQ*VEEDTSSL 447
           KS+ F  D CE CIL K KK+ +   G+   +  L+ VH   LW  S +A        S 
Sbjct: 403 KSIDF--DMCESCILGKQKKVSFLKTGRTPKAEKLELVH-TDLWGPSPVASL----GGSR 455

Query: 448 YF-------SRKLWVYILKNKADAFIRFVEWYNEVENEKVLG*NALEL 570
           Y+       SRK+WVY LKNK+D F+ F +W   VE E  L    L L
Sbjct: 456 YYITFIDDSSRKVWVYFLKNKSDVFVTFKKWKAMVETETGLKVKCLRL 503


>emb|CAN65235.1| hypothetical protein VITISV_040876 [Vitis vinifera]
          Length = 1379

 Score = 56.6 bits (135), Expect = 6e-06
 Identities = 40/98 (40%), Positives = 51/98 (52%), Gaps = 8/98 (8%)
 Frame = +1

Query: 271 KSMPFKLDSCEECILRKSKKLPYAM-GKQSSSLVLDYVHYKGLWRLSRIAQ*VEEDTSSL 447
           KS+ F  D CE CIL K KK+ +   G+   S  L+ VH   LW  S +A        S 
Sbjct: 46  KSIDF--DMCESCILGKQKKVSFLKTGRTPKSEKLELVH-TDLWGPSPVASL----GGSR 98

Query: 448 YF-------SRKLWVYILKNKADAFIRFVEWYNEVENE 540
           Y+       SRK+WVY LKNK+D F+ F +W   VE E
Sbjct: 99  YYITFIDDSSRKVWVYFLKNKSDVFVTFKKWKVMVETE 136


>emb|CAB40039.1| putative retrotransposon [Arabidopsis thaliana]
           gi|7267743|emb|CAB78169.1| putative retrotransposon
           [Arabidopsis thaliana]
          Length = 1230

 Score = 56.6 bits (135), Expect = 6e-06
 Identities = 34/102 (33%), Positives = 53/102 (51%), Gaps = 4/102 (3%)
 Frame = +1

Query: 247 ITKKRNSEKSMPFKLDSCEECILRKSKKLPYAMGKQSSSLVLDYVHYKGLWRLSRIAQ*V 426
           + KK   +     KL+ CE+CI  K+++L + +   ++   L+YVH   LW    +   +
Sbjct: 440 LVKKGYLDGKKVSKLELCEDCIYGKARRLSFVVATHNTEDKLNYVH-SDLWGAPSVPLSL 498

Query: 427 EEDTSSLYF----SRKLWVYILKNKADAFIRFVEWYNEVENE 540
            +    + F    SRK WVY LK+K +AF  F EW   VEN+
Sbjct: 499 GKCQYFISFIDVYSRKTWVYFLKHKDEAFGTFAEWSVMVENQ 540


>emb|CAN71109.1| hypothetical protein VITISV_001479 [Vitis vinifera]
          Length = 1246

 Score = 56.2 bits (134), Expect = 8e-06
 Identities = 39/98 (39%), Positives = 51/98 (52%), Gaps = 8/98 (8%)
 Frame = +1

Query: 271 KSMPFKLDSCEECILRKSKKLPYAM-GKQSSSLVLDYVHYKGLWRLSRIAQ*VEEDTSSL 447
           KS+ F  D CE CIL K KK+ +   G+   +  L+ VH   LW  S +A        S 
Sbjct: 412 KSIDF--DMCESCILGKQKKVSFLKTGRTPKAEKLELVH-TDLWGPSPVASL----GGSR 464

Query: 448 YF-------SRKLWVYILKNKADAFIRFVEWYNEVENE 540
           Y+       SRK+WVY LKNK+D F+ F +W   VE E
Sbjct: 465 YYITFIDDSSRKVWVYFLKNKSDVFVTFKKWKXMVETE 502


>emb|CAN61630.1| hypothetical protein VITISV_003191 [Vitis vinifera]
          Length = 1208

 Score = 56.2 bits (134), Expect = 8e-06
 Identities = 32/91 (35%), Positives = 47/91 (51%), Gaps = 7/91 (7%)
 Frame = +1

Query: 289 LDSCEECILRKSKKLPYAMGKQSSSLVLDYVHYKGLWRLSRIAQ*VEEDTSSLYF----- 453
           L  CE C+  K+ ++ +A     +   LDY+H   LW  SR    V     + YF     
Sbjct: 423 LPFCEHCVFGKATRVKFAKAIHETQNQLDYIH-SDLWGPSR----VPSIGGARYFLTLID 477

Query: 454 --SRKLWVYILKNKADAFIRFVEWYNEVENE 540
             SRK+W+Y LKNK++ F++F EW   VE +
Sbjct: 478 DYSRKVWIYFLKNKSETFLKFKEWKILVETQ 508


Top