BLASTX nr result
ID: Mentha29_contig00023234
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Mentha29_contig00023234
(642 letters)
Database: ./nr
38,876,450 sequences; 13,856,398,315 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|EYU38281.1| hypothetical protein MIMGU_mgv1a000048mg [Mimulus... 339 5e-91
gb|EPS67715.1| hypothetical protein M569_07058, partial [Genlise... 276 5e-72
gb|AAX12374.1| DNA-directed RNA polymerase alpha subunit [Spinac... 262 6e-68
ref|XP_004230024.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed... 259 6e-67
emb|CBI40152.3| unnamed protein product [Vitis vinifera] 258 1e-66
ref|XP_002265533.1| PREDICTED: DNA-directed RNA polymerase E sub... 258 1e-66
ref|XP_002303926.2| hypothetical protein POPTR_0003s19630g [Popu... 257 2e-66
gb|AAY89359.1| RNA polymerase IV largest subunit [Solanum lycope... 250 2e-64
ref|XP_004308588.1| PREDICTED: DNA-directed RNA polymerase E sub... 245 7e-63
ref|XP_006420718.1| hypothetical protein CICLE_v10004129mg [Citr... 244 2e-62
ref|XP_006470866.1| PREDICTED: DNA-directed RNA polymerase V sub... 243 3e-62
ref|XP_006411250.1| hypothetical protein EUTSA_v10016128mg [Eutr... 237 3e-60
ref|XP_007011001.1| DNA-directed RNA polymerase E subunit 1, put... 235 7e-60
ref|XP_007010999.1| DNA-directed RNA polymerase E subunit 1, put... 235 7e-60
ref|XP_007218881.1| hypothetical protein PRUPE_ppa000088mg [Prun... 229 4e-58
ref|XP_004511031.1| PREDICTED: DNA-directed RNA polymerase E sub... 224 1e-56
ref|XP_002879839.1| NRPD1b [Arabidopsis lyrata subsp. lyrata] gi... 220 2e-55
ref|XP_006293553.1| hypothetical protein CARUB_v10022497mg [Caps... 215 8e-54
gb|AAY89362.1| RNA polymerase IV largest subunit [Arabidopsis th... 215 1e-53
ref|NP_181532.2| nuclear RNA polymerase D1B [Arabidopsis thalian... 215 1e-53
>gb|EYU38281.1| hypothetical protein MIMGU_mgv1a000048mg [Mimulus guttatus]
Length = 2113
Score = 339 bits (869), Expect = 5e-91
Identities = 162/213 (76%), Positives = 189/213 (88%)
Frame = -2
Query: 641 RRVLLYLNGCDCGRKHCQETAALAVKNHLKRISLKEAAIEFLIEYRSQLVHENYDGNSGL 462
RRV+LYL+ CDCGRKHCQE+AAL VKN LK++SLK+ A+EFLIEYRSQ VHE+++ + GL
Sbjct: 876 RRVILYLSHCDCGRKHCQESAALVVKNQLKKVSLKDTAMEFLIEYRSQSVHESHETSHGL 935
Query: 461 LVGHIHLNKSQLMQSNIILSDVLEKCQDTINLNQKKKKVGNLFKRIDLSYSECCSFCQSS 282
VGHIHLNK+QL+QSNI + DVLEKC++TI L KKKKVGNLFK+++LS S+CCSFCQSS
Sbjct: 936 -VGHIHLNKTQLVQSNISMDDVLEKCRETIILQHKKKKVGNLFKKVELSVSDCCSFCQSS 994
Query: 281 KSKWTNVPCIQFFWQGASDVLLERASDILADTVCPVLLQTVIKGDPRVSTANLIWISPDT 102
KSK T+VPCIQFFWQGA D LLERAS LADTVCPVLLQT+IKGDPR+STAN++W+SPDT
Sbjct: 995 KSKLTDVPCIQFFWQGAPDNLLERASYFLADTVCPVLLQTIIKGDPRISTANVVWLSPDT 1054
Query: 101 ATWIRSPCKSPKGELAVDITLEKEAVTKSGDAW 3
TWIRSP KSP GELA+DI LEKEAV KSGDAW
Sbjct: 1055 PTWIRSPSKSPIGELALDIVLEKEAVRKSGDAW 1087
>gb|EPS67715.1| hypothetical protein M569_07058, partial [Genlisea aurea]
Length = 1379
Score = 276 bits (705), Expect = 5e-72
Identities = 130/213 (61%), Positives = 166/213 (77%)
Frame = -2
Query: 641 RRVLLYLNGCDCGRKHCQETAALAVKNHLKRISLKEAAIEFLIEYRSQLVHENYDGNSGL 462
RRV+LYL C+CGRKHCQET AL V+NHLK+++LK+ A++FLIEY QL +G GL
Sbjct: 876 RRVILYLTDCECGRKHCQETGALVVQNHLKKVTLKDTAVDFLIEYFHQLCQSLEEGYPGL 935
Query: 461 LVGHIHLNKSQLMQSNIILSDVLEKCQDTINLNQKKKKVGNLFKRIDLSYSECCSFCQSS 282
VGHIHL++ +L++SN+ + E C +TINL +KKKKVGNLFK+I LSYS+ C+FC SS
Sbjct: 936 -VGHIHLSEMELIRSNVNKDRIFEGCLETINLYEKKKKVGNLFKKIKLSYSDHCTFCASS 994
Query: 281 KSKWTNVPCIQFFWQGASDVLLERASDILADTVCPVLLQTVIKGDPRVSTANLIWISPDT 102
KSK T VPC+QF W GA D +++ S +L+DTVCP LLQTVIKGDPRVSTA ++W+SP T
Sbjct: 995 KSKRTEVPCVQFLWNGAIDD-IDKVSHLLSDTVCPALLQTVIKGDPRVSTAEIVWVSPGT 1053
Query: 101 ATWIRSPCKSPKGELAVDITLEKEAVTKSGDAW 3
ATWIRSP K+ GE+A+++ EKEA SGDAW
Sbjct: 1054 ATWIRSPSKNLNGEMAIEVVFEKEAARHSGDAW 1086
>gb|AAX12374.1| DNA-directed RNA polymerase alpha subunit [Spinacia oleracea]
Length = 1902
Score = 262 bits (670), Expect = 6e-68
Identities = 127/214 (59%), Positives = 163/214 (76%), Gaps = 1/214 (0%)
Frame = -2
Query: 641 RRVLLYLNGCDCGRKHCQETAALAVKNHLKRISLKEAAIEFLIEY-RSQLVHENYDGNSG 465
RRV+LYLN C CGRK+CQE A+ VKNHLK++SL++AAIE IEY R +L E+ + ++G
Sbjct: 678 RRVILYLNDCCCGRKYCQENASCLVKNHLKKVSLRDAAIELAIEYKRPKLEPESCEIDAG 737
Query: 464 LLVGHIHLNKSQLMQSNIILSDVLEKCQDTINLNQKKKKVGNLFKRIDLSYSECCSFCQS 285
L VGHIHLN L S I + D+L+KC++ +NL +KKKK G FKRI LS S+CC F
Sbjct: 738 L-VGHIHLNSGLLKASGIGMHDILQKCEEQVNLLRKKKKYGYHFKRILLSVSDCCFF-NH 795
Query: 284 SKSKWTNVPCIQFFWQGASDVLLERASDILADTVCPVLLQTVIKGDPRVSTANLIWISPD 105
S SKWT++PC++FFWQ +D LER I+AD +CPVLL T+IKGDPR+ST N+IWI+P
Sbjct: 796 SDSKWTDMPCLKFFWQDMTDTDLERTKHIMADMICPVLLDTIIKGDPRISTVNIIWINPG 855
Query: 104 TATWIRSPCKSPKGELAVDITLEKEAVTKSGDAW 3
T TW++SPC S KGELAV++ LEKEAV +GDAW
Sbjct: 856 TTTWVQSPCSSTKGELAVEVALEKEAVRLTGDAW 889
>ref|XP_004230024.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase E subunit
1 [Solanum lycopersicum]
Length = 1632
Score = 259 bits (661), Expect = 6e-67
Identities = 131/214 (61%), Positives = 159/214 (74%), Gaps = 1/214 (0%)
Frame = -2
Query: 641 RRVLLYLNGCDCGRKHCQETAALAVKNHLKRISLKEAAIEFLIEYRS-QLVHENYDGNSG 465
RRV+LYLN C C R +C+E AA VKNHL ++ LK+AA EFLIEY Q +EN + +G
Sbjct: 879 RRVILYLNDCGCRRGYCREKAAYVVKNHLSKVCLKDAADEFLIEYAGRQAGYENSETGTG 938
Query: 464 LLVGHIHLNKSQLMQSNIILSDVLEKCQDTINLNQKKKKVGNLFKRIDLSYSECCSFCQS 285
L +GHI LN+ QL I + +V E+CQ+ I+ QKKKK+GNLFKRI LS SE CSFC +
Sbjct: 939 L-IGHIRLNQGQLENLGISVLEVHERCQENISSFQKKKKIGNLFKRIVLSVSEFCSFCHN 997
Query: 284 SKSKWTNVPCIQFFWQGASDVLLERASDILADTVCPVLLQTVIKGDPRVSTANLIWISPD 105
S SK N PC++F W ASD LER S ILAD +CP+LL TVIKGDPRVS+AN+ WISPD
Sbjct: 998 SGSKCLNAPCLRFSWPDASDDHLERVSHILADMICPILLDTVIKGDPRVSSANIAWISPD 1057
Query: 104 TATWIRSPCKSPKGELAVDITLEKEAVTKSGDAW 3
T +WIRSP KS +GELA+DI LEKEAV + GDAW
Sbjct: 1058 TMSWIRSPSKSQRGELALDIVLEKEAVKQRGDAW 1091
>emb|CBI40152.3| unnamed protein product [Vitis vinifera]
Length = 1890
Score = 258 bits (659), Expect = 1e-66
Identities = 125/213 (58%), Positives = 154/213 (72%)
Frame = -2
Query: 641 RRVLLYLNGCDCGRKHCQETAALAVKNHLKRISLKEAAIEFLIEYRSQLVHENYDGNSGL 462
RRV+LYLN CDCGRK+C+E AA VKN LK+ SLK+ A+EF+IEY Q
Sbjct: 939 RRVILYLNDCDCGRKYCRENAAYLVKNQLKKASLKDTAVEFMIEYVKQHAVSGSSEPGTG 998
Query: 461 LVGHIHLNKSQLMQSNIILSDVLEKCQDTINLNQKKKKVGNLFKRIDLSYSECCSFCQSS 282
LVGHIHLNK L N+ + +V +KC++TIN +KKK VG FK+I LS+ ECC+F S
Sbjct: 999 LVGHIHLNKLLLQDLNVSMQEVCQKCEETINSFRKKKNVGPFFKKIILSFRECCTFQHSC 1058
Query: 281 KSKWTNVPCIQFFWQGASDVLLERASDILADTVCPVLLQTVIKGDPRVSTANLIWISPDT 102
+SK +++PC+ FFWQG D LE+ ILA +CPVLLQT+IKGD RV T N+IWISPDT
Sbjct: 1059 QSKGSDMPCLLFFWQGNRDDNLEQILHILAHKICPVLLQTIIKGDSRVCTVNIIWISPDT 1118
Query: 101 ATWIRSPCKSPKGELAVDITLEKEAVTKSGDAW 3
TWIR+PCKS KGELA+DI LEK AV + GDAW
Sbjct: 1119 TTWIRNPCKSRKGELALDIVLEKAAVKQRGDAW 1151
>ref|XP_002265533.1| PREDICTED: DNA-directed RNA polymerase E subunit 1 [Vitis vinifera]
Length = 1830
Score = 258 bits (659), Expect = 1e-66
Identities = 125/213 (58%), Positives = 154/213 (72%)
Frame = -2
Query: 641 RRVLLYLNGCDCGRKHCQETAALAVKNHLKRISLKEAAIEFLIEYRSQLVHENYDGNSGL 462
RRV+LYLN CDCGRK+C+E AA VKN LK+ SLK+ A+EF+IEY Q
Sbjct: 879 RRVILYLNDCDCGRKYCRENAAYLVKNQLKKASLKDTAVEFMIEYVKQHAVSGSSEPGTG 938
Query: 461 LVGHIHLNKSQLMQSNIILSDVLEKCQDTINLNQKKKKVGNLFKRIDLSYSECCSFCQSS 282
LVGHIHLNK L N+ + +V +KC++TIN +KKK VG FK+I LS+ ECC+F S
Sbjct: 939 LVGHIHLNKLLLQDLNVSMQEVCQKCEETINSFRKKKNVGPFFKKIILSFRECCTFQHSC 998
Query: 281 KSKWTNVPCIQFFWQGASDVLLERASDILADTVCPVLLQTVIKGDPRVSTANLIWISPDT 102
+SK +++PC+ FFWQG D LE+ ILA +CPVLLQT+IKGD RV T N+IWISPDT
Sbjct: 999 QSKGSDMPCLLFFWQGNRDDNLEQILHILAHKICPVLLQTIIKGDSRVCTVNIIWISPDT 1058
Query: 101 ATWIRSPCKSPKGELAVDITLEKEAVTKSGDAW 3
TWIR+PCKS KGELA+DI LEK AV + GDAW
Sbjct: 1059 TTWIRNPCKSRKGELALDIVLEKAAVKQRGDAW 1091
>ref|XP_002303926.2| hypothetical protein POPTR_0003s19630g [Populus trichocarpa]
gi|550343552|gb|EEE78905.2| hypothetical protein
POPTR_0003s19630g [Populus trichocarpa]
Length = 1920
Score = 257 bits (657), Expect = 2e-66
Identities = 125/213 (58%), Positives = 159/213 (74%)
Frame = -2
Query: 641 RRVLLYLNGCDCGRKHCQETAALAVKNHLKRISLKEAAIEFLIEYRSQLVHENYDGNSGL 462
RRV+LYLN C CGR +CQE AA VKNHL+++SLK+ A F+IEY+SQ + E++ ++GL
Sbjct: 885 RRVILYLNDCGCGRNYCQERAAYLVKNHLEKVSLKDIAKCFMIEYKSQQIPESFGSDAGL 944
Query: 461 LVGHIHLNKSQLMQSNIILSDVLEKCQDTINLNQKKKKVGNLFKRIDLSYSECCSFCQSS 282
VGH+HL+K +L NI +LEKCQ+T+N +KKKKVGNLFK+ L SE CSF Q
Sbjct: 945 -VGHVHLDKRKLQDLNITAQVILEKCQETVNTFRKKKKVGNLFKKTILLVSESCSFQQCI 1003
Query: 281 KSKWTNVPCIQFFWQGASDVLLERASDILADTVCPVLLQTVIKGDPRVSTANLIWISPDT 102
PC+ FFWQGA DV LER S+ILAD +CPVLL+T+IKGD R+S AN+IW +P+T
Sbjct: 1004 DES----PCLMFFWQGADDVHLERTSNILADMICPVLLETIIKGDHRISCANIIWATPET 1059
Query: 101 ATWIRSPCKSPKGELAVDITLEKEAVTKSGDAW 3
TWIR+P ++ KGELA+DI LEK V KSGDAW
Sbjct: 1060 NTWIRNPSRTQKGELALDIVLEKSVVKKSGDAW 1092
>gb|AAY89359.1| RNA polymerase IV largest subunit [Solanum lycopersicum]
Length = 1127
Score = 250 bits (639), Expect = 2e-64
Identities = 128/214 (59%), Positives = 156/214 (72%), Gaps = 1/214 (0%)
Frame = -2
Query: 641 RRVLLYLNGCDCGRKHCQETAALAVKNHLKRISLKEAAIEFLIEYRS-QLVHENYDGNSG 465
RRV+LYLN C C R +C+E AA VKNHL ++ LK+AA EFLIEY Q +EN + +G
Sbjct: 430 RRVILYLNDCGCRRGYCREKAAYVVKNHLSKVCLKDAADEFLIEYAGRQAGYENSETGTG 489
Query: 464 LLVGHIHLNKSQLMQSNIILSDVLEKCQDTINLNQKKKKVGNLFKRIDLSYSECCSFCQS 285
L +GHI LN+ QL I + +V E+CQ+ I+ + KKK+GNLFKRI LS SE CSFC +
Sbjct: 490 L-IGHIRLNQGQLENLGISVLEVHERCQENISSFRXKKKIGNLFKRIVLSVSEFCSFCHN 548
Query: 284 SKSKWTNVPCIQFFWQGASDVLLERASDILADTVCPVLLQTVIKGDPRVSTANLIWISPD 105
S SK N PC++F W ASD LER S ILAD + P+LL TVIKGDPRVS+AN+ WISPD
Sbjct: 549 SGSKCLNAPCLRFSWPDASDDHLERVSHILADMIXPILLDTVIKGDPRVSSANIAWISPD 608
Query: 104 TATWIRSPCKSPKGELAVDITLEKEAVTKSGDAW 3
T +WIRSP KS +GELA+DI LEKEAV GDAW
Sbjct: 609 TMSWIRSPSKSQRGELALDIVLEKEAVKXRGDAW 642
>ref|XP_004308588.1| PREDICTED: DNA-directed RNA polymerase E subunit 1-like [Fragaria
vesca subsp. vesca]
Length = 1991
Score = 245 bits (626), Expect = 7e-63
Identities = 119/218 (54%), Positives = 163/218 (74%), Gaps = 5/218 (2%)
Frame = -2
Query: 641 RRVLLYLNGCDCGRKHCQETAALAVKNHLKRISLKEAAIEFLIEYRSQLVHENYDGNSGL 462
RRV+LYLN C CGRK+C+E AA VKN LK++SLK+ A+EF+IEY+ + + + +SGL
Sbjct: 878 RRVVLYLNDCGCGRKYCREHAAYLVKNRLKKVSLKDTAVEFMIEYQKERAAGSMEIDSGL 937
Query: 461 LVGHIHLNKSQLMQSNIILSDVLEKCQDTINLNQKKK-----KVGNLFKRIDLSYSECCS 297
VGH+HLN+ L + N+ +S++L+KC++TIN ++KK +G +FKR LSYSECCS
Sbjct: 938 -VGHVHLNEMLLRELNLGMSEILQKCEETINSFRRKKVGKKMNIGEIFKRTILSYSECCS 996
Query: 296 FCQSSKSKWTNVPCIQFFWQGASDVLLERASDILADTVCPVLLQTVIKGDPRVSTANLIW 117
F QSS + PC+ FF+Q ++ LE S +LAD +CPVLL+TVIKGDPR+S+AN+IW
Sbjct: 997 FHQSSADNRSGSPCLMFFYQDFNNSELEAISQMLADFICPVLLKTVIKGDPRISSANIIW 1056
Query: 116 ISPDTATWIRSPCKSPKGELAVDITLEKEAVTKSGDAW 3
I+ ++ TWIRSP KS KGELA+D+ LEK V +SGDAW
Sbjct: 1057 INSESTTWIRSPNKSLKGELALDVVLEKSVVKQSGDAW 1094
>ref|XP_006420718.1| hypothetical protein CICLE_v10004129mg [Citrus clementina]
gi|557522591|gb|ESR33958.1| hypothetical protein
CICLE_v10004129mg [Citrus clementina]
Length = 1867
Score = 244 bits (622), Expect = 2e-62
Identities = 121/216 (56%), Positives = 154/216 (71%), Gaps = 3/216 (1%)
Frame = -2
Query: 641 RRVLLYLNGCDCGRKHCQETAALAVKNHLKRISLKEAAIEFLIEYRSQLVHENYDGNSGL 462
RRV+LYLN C CGRK+CQE AA VKN LKR+SLK+AA+EFLIEY+ + + +G
Sbjct: 879 RRVILYLNDCGCGRKYCQERAAYMVKNQLKRVSLKDAAVEFLIEYKKPEIISDDEG---- 934
Query: 461 LVGHIHLNKSQLMQSNIILSDVLEKCQDTINL---NQKKKKVGNLFKRIDLSYSECCSFC 291
LVGHIHLNK L I + D+L KCQ+T+ +K KKV FK LS SECCSF
Sbjct: 935 LVGHIHLNKILLEDLRISMHDILPKCQETLKSFCKKKKMKKVVQFFKNTSLSISECCSFQ 994
Query: 290 QSSKSKWTNVPCIQFFWQGASDVLLERASDILADTVCPVLLQTVIKGDPRVSTANLIWIS 111
QS K +N+PC+ F +GASD L++ S +LA+ + PVLL+T+IKGDPR+ +AN+IWIS
Sbjct: 995 QSCADKRSNMPCLMFVLRGASDSYLDKLSGVLANMIYPVLLETIIKGDPRICSANIIWIS 1054
Query: 110 PDTATWIRSPCKSPKGELAVDITLEKEAVTKSGDAW 3
PDT WIR+P K+ KGELA+D+ LEK V +SGDAW
Sbjct: 1055 PDTTAWIRNPSKNRKGELALDVVLEKSVVKQSGDAW 1090
>ref|XP_006470866.1| PREDICTED: DNA-directed RNA polymerase V subunit 1-like [Citrus
sinensis]
Length = 1865
Score = 243 bits (621), Expect = 3e-62
Identities = 121/216 (56%), Positives = 154/216 (71%), Gaps = 3/216 (1%)
Frame = -2
Query: 641 RRVLLYLNGCDCGRKHCQETAALAVKNHLKRISLKEAAIEFLIEYRSQLVHENYDGNSGL 462
RRV+LYLN C CGRK+CQE AA VKN LKR+SLK+AA+EFLIEY+ + + +G
Sbjct: 878 RRVILYLNDCGCGRKYCQERAAYMVKNQLKRVSLKDAAVEFLIEYKKPEIISDDEG---- 933
Query: 461 LVGHIHLNKSQLMQSNIILSDVLEKCQDTINL---NQKKKKVGNLFKRIDLSYSECCSFC 291
LVGHIHLNK L I + D+L KCQ+T+ +K KKV FK LS SECCSF
Sbjct: 934 LVGHIHLNKILLEDLRISMHDILPKCQETLKSFCKKKKMKKVVQFFKNTSLSVSECCSFQ 993
Query: 290 QSSKSKWTNVPCIQFFWQGASDVLLERASDILADTVCPVLLQTVIKGDPRVSTANLIWIS 111
QS K +N+PC+ F +GASD L++ S +LA+ + PVLL+T+IKGDPR+ +AN+IWIS
Sbjct: 994 QSCADKRSNMPCLMFVLRGASDSYLDKLSGVLANMIYPVLLETIIKGDPRIYSANIIWIS 1053
Query: 110 PDTATWIRSPCKSPKGELAVDITLEKEAVTKSGDAW 3
PDT WIR+P K+ KGELA+D+ LEK V +SGDAW
Sbjct: 1054 PDTTAWIRNPSKNRKGELALDVVLEKSVVKQSGDAW 1089
>ref|XP_006411250.1| hypothetical protein EUTSA_v10016128mg [Eutrema salsugineum]
gi|557112419|gb|ESQ52703.1| hypothetical protein
EUTSA_v10016128mg [Eutrema salsugineum]
Length = 1874
Score = 237 bits (604), Expect = 3e-60
Identities = 117/214 (54%), Positives = 152/214 (71%), Gaps = 1/214 (0%)
Frame = -2
Query: 641 RRVLLYLNGCDCGRKHCQETAALAVKNHLKRISLKEAAIEFLIEYRSQLVHENYDGNSGL 462
RRV+LYLN C CG+K+CQE AA V+N LK++SLKE A+EFL+EYR Q GN
Sbjct: 875 RRVILYLNECRCGKKYCQENAAYTVRNKLKKVSLKETAVEFLVEYRKQQAISEIFGNDSS 934
Query: 461 LVGHIHLNKSQLMQSNIILSDVLEKCQDTIN-LNQKKKKVGNLFKRIDLSYSECCSFCQS 285
L GHIHLNK+ L + NI + D+L+KC+D IN L QKKKK + FKR +LS+SECCSF
Sbjct: 935 LRGHIHLNKTLLQEWNISMQDILQKCEDAINSLVQKKKKKADDFKRTNLSFSECCSFRDP 994
Query: 284 SKSKWTNVPCIQFFWQGASDVLLERASDILADTVCPVLLQTVIKGDPRVSTANLIWISPD 105
SK +++PC+ F A+D LER D+L T+ PVLL+TVIKGDPR+ +AN+ W SP+
Sbjct: 995 CASKDSDMPCLMFSSYNATDPDLERTLDVLCHTIYPVLLETVIKGDPRIFSANITWNSPE 1054
Query: 104 TATWIRSPCKSPKGELAVDITLEKEAVTKSGDAW 3
T TWI + S +GE +D+T+EK AV +SGDAW
Sbjct: 1055 TTTWIWNRHASRRGEWVLDVTVEKSAVKQSGDAW 1088
>ref|XP_007011001.1| DNA-directed RNA polymerase E subunit 1, putative isoform 3
[Theobroma cacao] gi|508727914|gb|EOY19811.1|
DNA-directed RNA polymerase E subunit 1, putative isoform
3 [Theobroma cacao]
Length = 1675
Score = 235 bits (600), Expect = 7e-60
Identities = 116/214 (54%), Positives = 150/214 (70%), Gaps = 1/214 (0%)
Frame = -2
Query: 641 RRVLLYLNGCDCGRKHCQETAALAVKNHLKRISLKEAAIEFLIEYRSQ-LVHENYDGNSG 465
RRV+LYL CDCGRK+CQE AA VKNHL+++ LK+ A+E + EY+ Q V E+ G
Sbjct: 878 RRVILYLKDCDCGRKYCQENAAYLVKNHLRKVKLKDTAVELIFEYKQQQTVSESEAG--- 934
Query: 464 LLVGHIHLNKSQLMQSNIILSDVLEKCQDTINLNQKKKKVGNLFKRIDLSYSECCSFCQS 285
LVGHI LNK+ L + NI + +V KCQ+TI +KKKK + FKR DL +SECCS QS
Sbjct: 935 -LVGHILLNKAVLKELNISMQEVHMKCQETIISFRKKKKTADTFKRTDLFFSECCSIQQS 993
Query: 284 SKSKWTNVPCIQFFWQGASDVLLERASDILADTVCPVLLQTVIKGDPRVSTANLIWISPD 105
KW ++ C+ FF + D L+ L D + PVLL+TVIKGDPR+ +AN+IW+SPD
Sbjct: 994 CGGKWLDMSCLMFFCRNTKDDHLDCTLQDLVDIIYPVLLETVIKGDPRICSANIIWVSPD 1053
Query: 104 TATWIRSPCKSPKGELAVDITLEKEAVTKSGDAW 3
T TWIRSP K+ KGELA+D+ LEK AV ++GDAW
Sbjct: 1054 TTTWIRSPSKTQKGELALDVVLEKSAVKQNGDAW 1087
>ref|XP_007010999.1| DNA-directed RNA polymerase E subunit 1, putative isoform 1
[Theobroma cacao] gi|590569189|ref|XP_007011000.1|
DNA-directed RNA polymerase E subunit 1, putative isoform
1 [Theobroma cacao] gi|508727912|gb|EOY19809.1|
DNA-directed RNA polymerase E subunit 1, putative isoform
1 [Theobroma cacao] gi|508727913|gb|EOY19810.1|
DNA-directed RNA polymerase E subunit 1, putative isoform
1 [Theobroma cacao]
Length = 1788
Score = 235 bits (600), Expect = 7e-60
Identities = 116/214 (54%), Positives = 150/214 (70%), Gaps = 1/214 (0%)
Frame = -2
Query: 641 RRVLLYLNGCDCGRKHCQETAALAVKNHLKRISLKEAAIEFLIEYRSQ-LVHENYDGNSG 465
RRV+LYL CDCGRK+CQE AA VKNHL+++ LK+ A+E + EY+ Q V E+ G
Sbjct: 878 RRVILYLKDCDCGRKYCQENAAYLVKNHLRKVKLKDTAVELIFEYKQQQTVSESEAG--- 934
Query: 464 LLVGHIHLNKSQLMQSNIILSDVLEKCQDTINLNQKKKKVGNLFKRIDLSYSECCSFCQS 285
LVGHI LNK+ L + NI + +V KCQ+TI +KKKK + FKR DL +SECCS QS
Sbjct: 935 -LVGHILLNKAVLKELNISMQEVHMKCQETIISFRKKKKTADTFKRTDLFFSECCSIQQS 993
Query: 284 SKSKWTNVPCIQFFWQGASDVLLERASDILADTVCPVLLQTVIKGDPRVSTANLIWISPD 105
KW ++ C+ FF + D L+ L D + PVLL+TVIKGDPR+ +AN+IW+SPD
Sbjct: 994 CGGKWLDMSCLMFFCRNTKDDHLDCTLQDLVDIIYPVLLETVIKGDPRICSANIIWVSPD 1053
Query: 104 TATWIRSPCKSPKGELAVDITLEKEAVTKSGDAW 3
T TWIRSP K+ KGELA+D+ LEK AV ++GDAW
Sbjct: 1054 TTTWIRSPSKTQKGELALDVVLEKSAVKQNGDAW 1087
>ref|XP_007218881.1| hypothetical protein PRUPE_ppa000088mg [Prunus persica]
gi|462415343|gb|EMJ20080.1| hypothetical protein
PRUPE_ppa000088mg [Prunus persica]
Length = 1855
Score = 229 bits (585), Expect = 4e-58
Identities = 115/219 (52%), Positives = 146/219 (66%), Gaps = 6/219 (2%)
Frame = -2
Query: 641 RRVLLYLNGCDCGRKHCQETAALAVKNHLKRISLKEAAIEFLIEYRSQLVHENYDGNSGL 462
RRV+LYLN C CGRK+C+E AA VKN LK++SLK+ A+EF+IEY +QL N
Sbjct: 881 RRVILYLNNCGCGRKYCRERAACLVKNQLKKVSLKDTAVEFMIEYNNQLSGLGSLINDAG 940
Query: 461 LVGHIHLNKSQLMQSNIILSDVLEKCQDTIN------LNQKKKKVGNLFKRIDLSYSECC 300
LVGHIHLN+ L + NI + D+L+KCQ+TIN + +KK +G FK L SE C
Sbjct: 941 LVGHIHLNEDMLRELNIGVHDILQKCQETINSFRRKKVGKKKFNIGYHFKNTVLFASEHC 1000
Query: 299 SFCQSSKSKWTNVPCIQFFWQGASDVLLERASDILADTVCPVLLQTVIKGDPRVSTANLI 120
SF S K ++ PC+ FF Q D+ AD +CPVLL+T+IKGDPR+ +AN+I
Sbjct: 1001 SFHHSCAEKRSDSPCLMFFLQATDDLETTTTLQYYADLICPVLLETIIKGDPRIGSANII 1060
Query: 119 WISPDTATWIRSPCKSPKGELAVDITLEKEAVTKSGDAW 3
WI PDT TWIRSP KS KGE A+DI LEK + +SGDAW
Sbjct: 1061 WIDPDTTTWIRSPNKSQKGEWALDIVLEKSVIKQSGDAW 1099
>ref|XP_004511031.1| PREDICTED: DNA-directed RNA polymerase E subunit 1-like [Cicer
arietinum]
Length = 2263
Score = 224 bits (572), Expect = 1e-56
Identities = 106/213 (49%), Positives = 152/213 (71%)
Frame = -2
Query: 641 RRVLLYLNGCDCGRKHCQETAALAVKNHLKRISLKEAAIEFLIEYRSQLVHENYDGNSGL 462
RRV+LYLN CDCGR +C+E AA VKN L+++SLK+AA++F +EY+ Q + ++GL
Sbjct: 883 RRVILYLNDCDCGRSYCRENAAYLVKNQLRKVSLKDAALDFTVEYQQQRRRNDGSEDAGL 942
Query: 461 LVGHIHLNKSQLMQSNIILSDVLEKCQDTINLNQKKKKVGNLFKRIDLSYSECCSFCQSS 282
VGHIHLN++ L + I +S+V +KCQ+ +N +KKKV + F++ +L +SE CS SS
Sbjct: 943 -VGHIHLNEAMLEKLKINMSEVYQKCQERLNSFSRKKKVFHFFRKTELFFSESCSSLNSS 1001
Query: 281 KSKWTNVPCIQFFWQGASDVLLERASDILADTVCPVLLQTVIKGDPRVSTANLIWISPDT 102
PC+ W D L++ + +LAD +CPVLL T+I+GDPR+S+AN+IW++P T
Sbjct: 1002 ------APCVTILWPDGDD--LDQTTKVLADMICPVLLDTIIQGDPRISSANIIWVNPGT 1053
Query: 101 ATWIRSPCKSPKGELAVDITLEKEAVTKSGDAW 3
TW+R+P KS GELA+D+ LEKEAV +SGDAW
Sbjct: 1054 NTWVRNPSKSSNGELALDVILEKEAVKQSGDAW 1086
>ref|XP_002879839.1| NRPD1b [Arabidopsis lyrata subsp. lyrata] gi|297325678|gb|EFH56098.1|
NRPD1b [Arabidopsis lyrata subsp. lyrata]
Length = 1947
Score = 220 bits (561), Expect = 2e-55
Identities = 111/215 (51%), Positives = 147/215 (68%), Gaps = 2/215 (0%)
Frame = -2
Query: 641 RRVLLYLNGCDCGRKHCQETAALAVKNHLKRISLKEAAIEFLIEYRSQLVHENYDGNSGL 462
RRV+LYLN C CG++ CQE AA V+N LK++SLK+ A+EFL+EYR Q G
Sbjct: 875 RRVILYLNECHCGKRFCQENAAYTVRNKLKKVSLKDTAVEFLVEYRKQQTISEIFGIDSC 934
Query: 461 LVGHIHLNKSQLMQSNIILSDVLEKCQDTINL--NQKKKKVGNLFKRIDLSYSECCSFCQ 288
L GHIHL+K+ L NI + D+L+KC+D IN +KKKK + FKR LS SECCSF
Sbjct: 935 LHGHIHLDKTLLQDWNISMQDILQKCEDVINSLGQKKKKKATDDFKRTSLSVSECCSFQD 994
Query: 287 SSKSKWTNVPCIQFFWQGASDVLLERASDILADTVCPVLLQTVIKGDPRVSTANLIWISP 108
K +++PC+ F + A+D LER D+L +T+ PVLL+TVIKGDPR+ +AN+IW S
Sbjct: 995 PCGRKDSDMPCLMFSY-SATDPDLERTLDVLCNTIYPVLLETVIKGDPRICSANIIWNSS 1053
Query: 107 DTATWIRSPCKSPKGELAVDITLEKEAVTKSGDAW 3
D TWIR+ S +GE +D+T+EK AV +SGDAW
Sbjct: 1054 DMTTWIRNCHASRRGEWVLDVTVEKSAVKQSGDAW 1088
>ref|XP_006293553.1| hypothetical protein CARUB_v10022497mg [Capsella rubella]
gi|482562261|gb|EOA26451.1| hypothetical protein
CARUB_v10022497mg [Capsella rubella]
Length = 1959
Score = 215 bits (548), Expect = 8e-54
Identities = 109/215 (50%), Positives = 145/215 (67%), Gaps = 2/215 (0%)
Frame = -2
Query: 641 RRVLLYLNGCDCGRKHCQETAALAVKNHLKRISLKEAAIEFLIEYRSQLVHENYDGNSGL 462
RRV+LYLN C CG++ CQE AA V+N L ++SLK A+EFL+EYR Q G
Sbjct: 875 RRVILYLNECRCGKRFCQENAACTVRNKLNKVSLKATAVEFLVEYRKQQTISEIFGIDSC 934
Query: 461 LVGHIHLNKSQLMQSNIILSDVLEKCQDTINL--NQKKKKVGNLFKRIDLSYSECCSFCQ 288
L GHIHLNK+ L NI + D+ +KC+D IN +KKKK + FKR LS S+CCSF
Sbjct: 935 LHGHIHLNKTLLQDWNISMQDIHQKCEDVINSLGQKKKKKATDDFKRTSLSVSDCCSFRD 994
Query: 287 SSKSKWTNVPCIQFFWQGASDVLLERASDILADTVCPVLLQTVIKGDPRVSTANLIWISP 108
SK +++PC+ F + A++ LER D+L +T+ PVLL+TVIKGDPR+ +AN+IW S
Sbjct: 995 PCGSKDSDMPCLMFSY-NATNPDLERTLDVLCNTIYPVLLETVIKGDPRICSANIIWNSS 1053
Query: 107 DTATWIRSPCKSPKGELAVDITLEKEAVTKSGDAW 3
D TWIR+ S +GE +D+T+EK AV +SGDAW
Sbjct: 1054 DMTTWIRNRHASRRGEWVLDVTVEKSAVKQSGDAW 1088
>gb|AAY89362.1| RNA polymerase IV largest subunit [Arabidopsis thaliana]
Length = 1976
Score = 215 bits (547), Expect = 1e-53
Identities = 110/215 (51%), Positives = 144/215 (66%), Gaps = 2/215 (0%)
Frame = -2
Query: 641 RRVLLYLNGCDCGRKHCQETAALAVKNHLKRISLKEAAIEFLIEYRSQLVHENYDGNSGL 462
RRV+LYLN C CG++ CQE AA V+N L ++SLK+ A+EFL+EYR Q G
Sbjct: 875 RRVILYLNECHCGKRFCQENAACTVRNKLNKVSLKDTAVEFLVEYRKQPTISEIFGIDSC 934
Query: 461 LVGHIHLNKSQLMQSNIILSDVLEKCQDTINL--NQKKKKVGNLFKRIDLSYSECCSFCQ 288
L GHIHLNK+ L NI + D+ +KC+D IN +KKKK + FKR LS SECCSF
Sbjct: 935 LHGHIHLNKTLLQDWNISMQDIHQKCEDVINSLGQKKKKKATDDFKRTSLSVSECCSFRD 994
Query: 287 SSKSKWTNVPCIQFFWQGASDVLLERASDILADTVCPVLLQTVIKGDPRVSTANLIWISP 108
SK +++PC+ F + A+D LER D+L +TV PVLL+ VIKGD R+ +AN+IW S
Sbjct: 995 PCGSKGSDMPCLTFSY-NATDPDLERTLDVLCNTVYPVLLEIVIKGDSRICSANIIWNSS 1053
Query: 107 DTATWIRSPCKSPKGELAVDITLEKEAVTKSGDAW 3
D TWIR+ S +GE +D+T+EK AV +SGDAW
Sbjct: 1054 DMTTWIRNRHASRRGEWVLDVTVEKSAVKQSGDAW 1088
>ref|NP_181532.2| nuclear RNA polymerase D1B [Arabidopsis thaliana]
gi|75320513|sp|Q5D869.1|NRPE1_ARATH RecName:
Full=DNA-directed RNA polymerase V subunit 1; AltName:
Full=DNA-directed RNA polymerase D subunit 1b;
Short=AtNRPD1b; Short=Nuclear RNA polymerase D 1b;
AltName: Full=DNA-directed RNA polymerase E subunit 1;
Short=Nuclear RNA polymerase E 1; AltName: Full=Protein
DEFECTIVE IN MERISTEM SILENCING 5; AltName: Full=Protein
DEFECTIVE IN RNA-DIRECTED DNA METHYLATION 3; AltName:
Full=Protein RNA-DIRECTED DNA METHYLATION DEFECTIVE 1;
AltName: Full=RNA polymerase IV subunit 1; Short=POL IV 1
gi|59939210|gb|AAX12373.1| DNA-directed RNA polymerase
alpha subunit [Arabidopsis thaliana]
gi|62822917|gb|AAY15198.1| DNA-dependent RNA polymerase
large subunit [Arabidopsis thaliana]
gi|330254673|gb|AEC09767.1| nuclear RNA polymerase D1B
[Arabidopsis thaliana]
Length = 1976
Score = 215 bits (547), Expect = 1e-53
Identities = 110/215 (51%), Positives = 144/215 (66%), Gaps = 2/215 (0%)
Frame = -2
Query: 641 RRVLLYLNGCDCGRKHCQETAALAVKNHLKRISLKEAAIEFLIEYRSQLVHENYDGNSGL 462
RRV+LYLN C CG++ CQE AA V+N L ++SLK+ A+EFL+EYR Q G
Sbjct: 875 RRVILYLNECHCGKRFCQENAACTVRNKLNKVSLKDTAVEFLVEYRKQPTISEIFGIDSC 934
Query: 461 LVGHIHLNKSQLMQSNIILSDVLEKCQDTINL--NQKKKKVGNLFKRIDLSYSECCSFCQ 288
L GHIHLNK+ L NI + D+ +KC+D IN +KKKK + FKR LS SECCSF
Sbjct: 935 LHGHIHLNKTLLQDWNISMQDIHQKCEDVINSLGQKKKKKATDDFKRTSLSVSECCSFRD 994
Query: 287 SSKSKWTNVPCIQFFWQGASDVLLERASDILADTVCPVLLQTVIKGDPRVSTANLIWISP 108
SK +++PC+ F + A+D LER D+L +TV PVLL+ VIKGD R+ +AN+IW S
Sbjct: 995 PCGSKGSDMPCLTFSY-NATDPDLERTLDVLCNTVYPVLLEIVIKGDSRICSANIIWNSS 1053
Query: 107 DTATWIRSPCKSPKGELAVDITLEKEAVTKSGDAW 3
D TWIR+ S +GE +D+T+EK AV +SGDAW
Sbjct: 1054 DMTTWIRNRHASRRGEWVLDVTVEKSAVKQSGDAW 1088