BLASTX nr result
ID: Mentha29_contig00020623
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Mentha29_contig00020623
(1920 letters)
Database: ./nr
38,876,450 sequences; 13,856,398,315 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAO53407.1| reverse transcriptase [Cauliflower mosaic virus] 361 6e-97
dbj|BAO53372.1| reverse transcriptase [Cauliflower mosaic virus] 361 7e-97
dbj|BAO53365.1| reverse transcriptase [Cauliflower mosaic virus] 361 7e-97
dbj|BAO53379.1| reverse transcriptase [Cauliflower mosaic virus]... 360 1e-96
gb|AFI61742.1| reverse transcriptase [Cauliflower mosaic virus] 360 1e-96
dbj|BAO53421.1| reverse transcriptase [Cauliflower mosaic virus] 360 1e-96
emb|CAA55974.1| unnamed protein product [Cauliflower mosaic virus] 360 1e-96
dbj|BAO53386.1| reverse transcriptase [Cauliflower mosaic virus] 360 2e-96
dbj|BAO53393.1| reverse transcriptase [Cauliflower mosaic virus]... 359 2e-96
sp|P03555.1|POL_CAMVC RecName: Full=Enzymatic polyprotein; Inclu... 359 2e-96
ref|NP_056728.1| reverse transcriptase [Cauliflower mosaic virus... 359 2e-96
sp|Q02964.1|POL_CAMVE RecName: Full=Enzymatic polyprotein; Inclu... 358 4e-96
gb|AAA21736.1| reverse transcriptase [Cauliflower mosaic virus] 358 6e-96
dbj|BAO53547.1| reverse transcriptase [Cauliflower mosaic virus] 357 1e-95
dbj|BAO53456.1| reverse transcriptase [Cauliflower mosaic virus] 357 1e-95
dbj|BAO53680.1| reverse transcriptase [Cauliflower mosaic virus] 356 2e-95
dbj|BAO53435.1| reverse transcriptase [Cauliflower mosaic virus] 356 2e-95
dbj|BAO53554.1| reverse transcriptase [Cauliflower mosaic virus] 356 2e-95
dbj|BAO53505.1| reverse transcriptase [Cauliflower mosaic virus] 356 2e-95
dbj|BAO53659.1| reverse transcriptase [Cauliflower mosaic virus] 355 3e-95
>dbj|BAO53407.1| reverse transcriptase [Cauliflower mosaic virus]
Length = 679
Score = 361 bits (927), Expect = 6e-97
Identities = 207/620 (33%), Positives = 343/620 (55%), Gaps = 7/620 (1%)
Frame = +2
Query: 80 LILNKGVKMVEILIGGAGQTPWYKVKTPPIYFHDTGADILLGNNFLQMFKRYMQDNEQQR 259
+ ++K K ++++I G K P +Y ++G D ++GNNF Q+++ ++Q + R
Sbjct: 80 ITISKVCKDIDLIIAGE------IFKIPTVYQQESGIDFIIGNNFCQLYEPFIQFTD--R 131
Query: 260 LVFTTQCDHKIIVQRIKGAFNRQMPLAFRSKRGDEGQLRHPKMQDRRKFNEALLNYRIRG 439
++FT + + + +I A + G EG L K + + + E +
Sbjct: 132 VIFTKNKSYPVHIAKITRAV----------RVGTEGFLESMKKRSKTQQPEPV------- 174
Query: 440 ALIDSEFEDNEAEIQCLKVSL-ISKDIESDSQVSLEDVKRKIVRCYNENPLAWWEKNQLR 616
+ ++ E+ EI L +S++ +Q ++ ++ + + +ENPL + N+ +
Sbjct: 175 NISTNKIENPLEEIAILSEGRRLSEEKLFITQQRMQKIEELLEKVCSENPL---DPNKTK 231
Query: 617 ATLKA--KPDKVNEFVRFRPILMNIKDQQDMKEIIKEHLDMKLIEPGNSPYSSPGFLVRN 790
+KA K ++ ++ +P+ + D+++ + IKE LD+K+I+P SP+ +P FLV N
Sbjct: 232 QWMKASIKLSDPSKAIKVKPMKYSPMDREEFDKQIKELLDLKVIKPSKSPHMAPAFLVNN 291
Query: 791 HGEIKRNKPRLVINYKGINDILEFDGYFILSREHLINCIRNAKVFSKFDCKSGFYQIRME 970
E +R K R+V+NYK +N D Y + +++ L+ IR K+FS FDCKSGF+Q+ ++
Sbjct: 292 EAEKRRGKKRMVVNYKAMNKATVGDAYNLPNKDELLTLIRGKKIFSSFDCKSGFWQVLLD 351
Query: 971 ERSKKFTAFSTPQGHYVWNVMPMGLANAPQIFQRKMDNLFKDYFSFMFVYIDDILITSKD 1150
+ S+ TAF+ PQGHY WNV+P GL AP IFQR MD F+ + F VY+DDIL+ S +
Sbjct: 352 QESRPLTAFTCPQGHYEWNVVPFGLKQAPSIFQRHMDEAFRVFRKFCCVYVDDILVFSNN 411
Query: 1151 INEHVKHLEIFADVCYKEGLVLSEKKAVIATRKMEFLGIEIDESGIILQDHIVQKVKNFS 1330
+H+ H+ + C + G++LS+KKA + +K+ FLG+EIDE Q HI++ + F
Sbjct: 412 EEDHLLHVAMILQKCNQHGIILSKKKAQLFKKKINFLGLEIDEGTHKPQGHILEHINKFP 471
Query: 1331 EDLKEKKQLQSFLGVVNFAGAFIKNLAKYRKVFSPLLKKDVPFIWTEEHRKGMRDLKVVC 1510
+ L++KKQLQ FLG++ +A +I LA+ RK LK++VP+ WT+E M+ +K
Sbjct: 472 DTLEDKKQLQRFLGILTYASDYIPKLAQIRKPLQAKLKENVPWKWTKEDTLYMQKVKKNL 531
Query: 1511 ENLPKLSIPQDEDDLVLYTDASDHWWAAVLTKIT----PNGEEPCRYCSGLFQDNEAIRW 1678
+ P L P E+ L++ TDASD +W +L I N E CRY SG F+ E +
Sbjct: 532 QGFPPLHHPLPEEKLIIETDASDDYWGGMLKAIKINEGTNTELICRYASGSFKAAER-NY 590
Query: 1679 HINEKEFFAVRKAFKKWPXXXXXXXXXXXXDNTQVKAFLKNKIESKPEKARLLRWQAECQ 1858
H N+KE AV KK+ DNT K+F+ + + R +RWQA
Sbjct: 591 HSNDKETLAVINTIKKFSIYLTPVHFLIRTDNTHFKSFVNLNYKGDSKLGRNIRWQAWLS 650
Query: 1859 YFIFDIVIVKSHENVLADFL 1918
++ FD+ +K +N ADFL
Sbjct: 651 HYSFDVEHIKGTDNHFADFL 670
>dbj|BAO53372.1| reverse transcriptase [Cauliflower mosaic virus]
Length = 679
Score = 361 bits (926), Expect = 7e-97
Identities = 206/620 (33%), Positives = 343/620 (55%), Gaps = 7/620 (1%)
Frame = +2
Query: 80 LILNKGVKMVEILIGGAGQTPWYKVKTPPIYFHDTGADILLGNNFLQMFKRYMQDNEQQR 259
+ ++K K ++++I G K P +Y ++G D ++GNNF Q+++ ++Q + R
Sbjct: 80 ITISKVCKDIDLIIAGE------IFKIPTVYQQESGIDFIIGNNFCQLYEPFIQFTD--R 131
Query: 260 LVFTTQCDHKIIVQRIKGAFNRQMPLAFRSKRGDEGQLRHPKMQDRRKFNEALLNYRIRG 439
++FT + + + ++ A + G EG L K + + + E +
Sbjct: 132 VIFTKNKSYPVHIAKLTRAM----------RVGTEGFLESMKKRSKTQQPEPV------- 174
Query: 440 ALIDSEFEDNEAEIQCLKVSL-ISKDIESDSQVSLEDVKRKIVRCYNENPLAWWEKNQLR 616
+ ++ E+ EI L +S++ +Q ++ ++ + + +ENPL + N+ +
Sbjct: 175 NISTNKIENPLEEIAILSEGRRLSEEKLFITQQRMQKIEELLEKVCSENPL---DPNKTK 231
Query: 617 ATLKA--KPDKVNEFVRFRPILMNIKDQQDMKEIIKEHLDMKLIEPGNSPYSSPGFLVRN 790
+KA K ++ ++ +P+ + D+++ + IKE LD+K+I+P SP+ +P FLV N
Sbjct: 232 QWMKASIKLSDPSKAIKVKPMKYSPMDREEFDKQIKELLDLKVIKPSKSPHMAPAFLVNN 291
Query: 791 HGEIKRNKPRLVINYKGINDILEFDGYFILSREHLINCIRNAKVFSKFDCKSGFYQIRME 970
E +R K R+V+NYK +N D Y + +++ L+ IR K+FS FDCKSGF+Q+ ++
Sbjct: 292 EAEKRRGKKRMVVNYKAMNKATVGDAYNLPNKDELLTLIRGKKIFSSFDCKSGFWQVLLD 351
Query: 971 ERSKKFTAFSTPQGHYVWNVMPMGLANAPQIFQRKMDNLFKDYFSFMFVYIDDILITSKD 1150
+ S+ TAF+ PQGHY WNV+P GL AP IFQR MD F+ + F VY+DDIL+ S +
Sbjct: 352 QESRPLTAFTCPQGHYEWNVVPFGLKQAPSIFQRHMDEAFRVFRKFCCVYVDDILVFSNN 411
Query: 1151 INEHVKHLEIFADVCYKEGLVLSEKKAVIATRKMEFLGIEIDESGIILQDHIVQKVKNFS 1330
+H+ H+ + C + G++LS+KKA + +K+ FLG+EIDE Q HI++ + F
Sbjct: 412 EEDHLLHVAMILQKCNQHGIILSKKKAQLFKKKINFLGLEIDEGTHKPQGHILEHINKFP 471
Query: 1331 EDLKEKKQLQSFLGVVNFAGAFIKNLAKYRKVFSPLLKKDVPFIWTEEHRKGMRDLKVVC 1510
+ L++KKQLQ FLG++ +A +I LA+ RK LK++VP+ WT+E M+ +K
Sbjct: 472 DTLEDKKQLQRFLGILTYASDYIPKLAQIRKPLQAKLKENVPWKWTKEDTLYMQKVKKNL 531
Query: 1511 ENLPKLSIPQDEDDLVLYTDASDHWWAAVLTKIT----PNGEEPCRYCSGLFQDNEAIRW 1678
+ P L P E+ L++ TDASD +W +L I N E CRY SG F+ E +
Sbjct: 532 QGFPPLHHPLPEEKLIIETDASDDYWGGMLKAIKINEGTNTELICRYASGSFKAAER-NY 590
Query: 1679 HINEKEFFAVRKAFKKWPXXXXXXXXXXXXDNTQVKAFLKNKIESKPEKARLLRWQAECQ 1858
H N+KE AV KK+ DNT K+F+ + + R +RWQA
Sbjct: 591 HSNDKETLAVINTIKKFSIYLTPVHFLIRTDNTHFKSFVNLNYKGDSKLGRNIRWQAWLS 650
Query: 1859 YFIFDIVIVKSHENVLADFL 1918
++ FD+ +K +N ADFL
Sbjct: 651 HYSFDVEHIKGTDNHFADFL 670
>dbj|BAO53365.1| reverse transcriptase [Cauliflower mosaic virus]
Length = 679
Score = 361 bits (926), Expect = 7e-97
Identities = 206/620 (33%), Positives = 343/620 (55%), Gaps = 7/620 (1%)
Frame = +2
Query: 80 LILNKGVKMVEILIGGAGQTPWYKVKTPPIYFHDTGADILLGNNFLQMFKRYMQDNEQQR 259
+ ++K K ++++I G K P +Y ++G D ++GNNF Q+++ ++Q + R
Sbjct: 80 ITISKVCKDIDLIIAGE------IFKIPTVYQQESGIDFIIGNNFCQLYEPFIQFTD--R 131
Query: 260 LVFTTQCDHKIIVQRIKGAFNRQMPLAFRSKRGDEGQLRHPKMQDRRKFNEALLNYRIRG 439
++FT + + + ++ A + G EG L K + + + E +
Sbjct: 132 VIFTKNKSYPVHIAKLTRAM----------RVGTEGFLESMKKRSKTQQPEPV------- 174
Query: 440 ALIDSEFEDNEAEIQCLKVSL-ISKDIESDSQVSLEDVKRKIVRCYNENPLAWWEKNQLR 616
+ ++ E+ EI L +S++ +Q ++ ++ + + +ENPL + N+ +
Sbjct: 175 NISTNKIENPLEEIAILSEGRRLSEEKLFITQQRMQKIEELLEKVCSENPL---DPNKTK 231
Query: 617 ATLKA--KPDKVNEFVRFRPILMNIKDQQDMKEIIKEHLDMKLIEPGNSPYSSPGFLVRN 790
+KA K ++ ++ +P+ + D+++ + IKE LD+K+I+P SP+ +P FLV N
Sbjct: 232 QWMKASIKLSDPSKAIKVKPMKYSPMDREEFDKQIKELLDLKVIKPSKSPHMAPAFLVNN 291
Query: 791 HGEIKRNKPRLVINYKGINDILEFDGYFILSREHLINCIRNAKVFSKFDCKSGFYQIRME 970
E +R K R+V+NYK +N D Y + +++ L+ IR K+FS FDCKSGF+Q+ ++
Sbjct: 292 EAEKRRGKKRMVVNYKAMNKATVGDAYNLPNKDELLTLIRGKKIFSSFDCKSGFWQVLLD 351
Query: 971 ERSKKFTAFSTPQGHYVWNVMPMGLANAPQIFQRKMDNLFKDYFSFMFVYIDDILITSKD 1150
+ S+ TAF+ PQGHY WNV+P GL AP IFQR MD F+ + F VY+DDIL+ S +
Sbjct: 352 QESRPLTAFTCPQGHYEWNVVPFGLKQAPSIFQRHMDEAFRVFRKFCCVYVDDILVFSNN 411
Query: 1151 INEHVKHLEIFADVCYKEGLVLSEKKAVIATRKMEFLGIEIDESGIILQDHIVQKVKNFS 1330
+H+ H+ + C + G++LS+KKA + +K+ FLG+EIDE Q HI++ + F
Sbjct: 412 EEDHLLHVAMILQKCNQHGIILSKKKAQLFKKKINFLGLEIDEGTHKPQGHILEHINKFP 471
Query: 1331 EDLKEKKQLQSFLGVVNFAGAFIKNLAKYRKVFSPLLKKDVPFIWTEEHRKGMRDLKVVC 1510
+ L++KKQLQ FLG++ +A +I LA+ RK LK++VP+ WT+E M+ +K
Sbjct: 472 DTLEDKKQLQRFLGILTYASDYIPKLAQIRKPLQAKLKENVPWKWTKEDTLYMQKVKKNL 531
Query: 1511 ENLPKLSIPQDEDDLVLYTDASDHWWAAVLTKIT----PNGEEPCRYCSGLFQDNEAIRW 1678
+ P L P E+ L++ TDASD +W +L I N E CRY SG F+ E +
Sbjct: 532 QGFPPLHHPLPEEKLIIETDASDDYWGGMLKAIKINEGTNTELICRYASGSFKAAER-NY 590
Query: 1679 HINEKEFFAVRKAFKKWPXXXXXXXXXXXXDNTQVKAFLKNKIESKPEKARLLRWQAECQ 1858
H N+KE AV KK+ DNT K+F+ + + R +RWQA
Sbjct: 591 HSNDKETLAVINTIKKFSIYLTPVHFLIRTDNTHFKSFVNLNYKGDSKLGRNIRWQAWLS 650
Query: 1859 YFIFDIVIVKSHENVLADFL 1918
++ FD+ +K +N ADFL
Sbjct: 651 HYSFDVEHIKGTDNHFADFL 670
>dbj|BAO53379.1| reverse transcriptase [Cauliflower mosaic virus]
gi|591288602|dbj|BAO53414.1| reverse transcriptase
[Cauliflower mosaic virus]
Length = 679
Score = 360 bits (925), Expect = 1e-96
Identities = 206/620 (33%), Positives = 343/620 (55%), Gaps = 7/620 (1%)
Frame = +2
Query: 80 LILNKGVKMVEILIGGAGQTPWYKVKTPPIYFHDTGADILLGNNFLQMFKRYMQDNEQQR 259
+ ++K K ++++I G K P +Y ++G D ++GNNF Q+++ ++Q + R
Sbjct: 80 ITISKVCKDIDLIIAGE------IFKIPTVYQQESGIDFIIGNNFCQLYEPFIQFTD--R 131
Query: 260 LVFTTQCDHKIIVQRIKGAFNRQMPLAFRSKRGDEGQLRHPKMQDRRKFNEALLNYRIRG 439
++FT + + + ++ A + G EG L K + + + E +
Sbjct: 132 VIFTKNKSYPVHIAKLTRAV----------RVGTEGFLESMKKRSKTQQPEPV------- 174
Query: 440 ALIDSEFEDNEAEIQCLKVSL-ISKDIESDSQVSLEDVKRKIVRCYNENPLAWWEKNQLR 616
+ ++ E+ EI L +S++ +Q ++ ++ + + +ENPL + N+ +
Sbjct: 175 NISTNKIENPLEEIAILSEGRRLSEEKLFITQQRMQKIEELLEKVCSENPL---DPNKTK 231
Query: 617 ATLKA--KPDKVNEFVRFRPILMNIKDQQDMKEIIKEHLDMKLIEPGNSPYSSPGFLVRN 790
+KA K ++ ++ +P+ + D+++ + IKE LD+K+I+P SP+ +P FLV N
Sbjct: 232 QWMKASIKLSDPSKAIKVKPMKYSPMDREEFDKQIKELLDLKVIKPSKSPHMAPAFLVNN 291
Query: 791 HGEIKRNKPRLVINYKGINDILEFDGYFILSREHLINCIRNAKVFSKFDCKSGFYQIRME 970
E +R K R+V+NYK +N D Y + +++ L+ IR K+FS FDCKSGF+Q+ ++
Sbjct: 292 EAEKRRGKKRMVVNYKAMNKATVGDAYNLPNKDELLTLIRGKKIFSSFDCKSGFWQVLLD 351
Query: 971 ERSKKFTAFSTPQGHYVWNVMPMGLANAPQIFQRKMDNLFKDYFSFMFVYIDDILITSKD 1150
+ S+ TAF+ PQGHY WNV+P GL AP IFQR MD F+ + F VY+DDIL+ S +
Sbjct: 352 QESRPLTAFTCPQGHYEWNVVPFGLKQAPSIFQRHMDEAFRVFRKFCCVYVDDILVFSNN 411
Query: 1151 INEHVKHLEIFADVCYKEGLVLSEKKAVIATRKMEFLGIEIDESGIILQDHIVQKVKNFS 1330
+H+ H+ + C + G++LS+KKA + +K+ FLG+EIDE Q HI++ + F
Sbjct: 412 EEDHLLHVAMILQKCNQHGIILSKKKAQLFKKKINFLGLEIDEGTHKPQGHILEHINKFP 471
Query: 1331 EDLKEKKQLQSFLGVVNFAGAFIKNLAKYRKVFSPLLKKDVPFIWTEEHRKGMRDLKVVC 1510
+ L++KKQLQ FLG++ +A +I LA+ RK LK++VP+ WT+E M+ +K
Sbjct: 472 DTLEDKKQLQRFLGILTYASDYIPKLAQIRKPLQAKLKENVPWKWTKEDTLYMQKVKKNL 531
Query: 1511 ENLPKLSIPQDEDDLVLYTDASDHWWAAVLTKIT----PNGEEPCRYCSGLFQDNEAIRW 1678
+ P L P E+ L++ TDASD +W +L I N E CRY SG F+ E +
Sbjct: 532 QGFPPLHHPLPEEKLIIETDASDDYWGGMLKAIKINEGTNTELICRYASGSFKAAER-NY 590
Query: 1679 HINEKEFFAVRKAFKKWPXXXXXXXXXXXXDNTQVKAFLKNKIESKPEKARLLRWQAECQ 1858
H N+KE AV KK+ DNT K+F+ + + R +RWQA
Sbjct: 591 HSNDKETLAVINTIKKFSIYLTPVHFLIRTDNTHFKSFVNLNYKGDSKLGRNIRWQAWLS 650
Query: 1859 YFIFDIVIVKSHENVLADFL 1918
++ FD+ +K +N ADFL
Sbjct: 651 HYSFDVEHIKGTDNHFADFL 670
>gb|AFI61742.1| reverse transcriptase [Cauliflower mosaic virus]
Length = 679
Score = 360 bits (925), Expect = 1e-96
Identities = 205/620 (33%), Positives = 344/620 (55%), Gaps = 7/620 (1%)
Frame = +2
Query: 80 LILNKGVKMVEILIGGAGQTPWYKVKTPPIYFHDTGADILLGNNFLQMFKRYMQDNEQQR 259
+ ++K K ++++I G K P +Y ++G D ++GNNF Q+++ ++Q + R
Sbjct: 80 ITISKVCKDIDLIIAGE------IFKIPTVYQQESGIDFIIGNNFCQLYEPFIQFTD--R 131
Query: 260 LVFTTQCDHKIIVQRIKGAFNRQMPLAFRSKRGDEGQLRHPKMQDRRKFNEALLNYRIRG 439
++FT + + + ++ A + G EG L K + + + E +
Sbjct: 132 VIFTKNKSYPVHIAKLTRAV----------RVGTEGFLESMKKRSKTQQPEPV------- 174
Query: 440 ALIDSEFEDNEAEIQCLKVSL-ISKDIESDSQVSLEDVKRKIVRCYNENPLAWWEKNQLR 616
+ ++ E+ + EI L ++++ +Q ++ ++ + + +ENPL + N+ +
Sbjct: 175 NISTNKIENPKEEIAILSEGRRLAEEKLFITQQRMQKIEELLEKVCSENPL---DPNKTK 231
Query: 617 ATLKA--KPDKVNEFVRFRPILMNIKDQQDMKEIIKEHLDMKLIEPGNSPYSSPGFLVRN 790
+KA K ++ ++ +P+ + D+++ + IKE LD+K+I+P SP+ +P FLV N
Sbjct: 232 QWMKASIKLSDPSKAIKVKPMKYSPMDREEFDKQIKELLDLKVIKPSKSPHMAPAFLVNN 291
Query: 791 HGEIKRNKPRLVINYKGINDILEFDGYFILSREHLINCIRNAKVFSKFDCKSGFYQIRME 970
E +R K R+V+NYK +N D Y + +++ L+ IR K+FS FDCKSGF+Q+ ++
Sbjct: 292 EAEKRRGKKRMVVNYKAMNKATIGDAYNLPNKDELLTLIRGKKIFSSFDCKSGFWQVLLD 351
Query: 971 ERSKKFTAFSTPQGHYVWNVMPMGLANAPQIFQRKMDNLFKDYFSFMFVYIDDILITSKD 1150
+ S+ TAF+ PQGHY WNV+P GL AP IFQR MD F+ + F VY+DDIL+ S +
Sbjct: 352 QESRPLTAFTCPQGHYEWNVVPFGLKQAPSIFQRHMDEAFRVFRKFCCVYVDDILVFSNN 411
Query: 1151 INEHVKHLEIFADVCYKEGLVLSEKKAVIATRKMEFLGIEIDESGIILQDHIVQKVKNFS 1330
+H+ H+ + C + G++LS+KKA + +K+ FLG+EIDE Q HI++ + F
Sbjct: 412 EEDHLLHVAMILQKCNQHGIILSKKKAQLFKKKINFLGLEIDEGTHKPQGHILEHINKFP 471
Query: 1331 EDLKEKKQLQSFLGVVNFAGAFIKNLAKYRKVFSPLLKKDVPFIWTEEHRKGMRDLKVVC 1510
+ L++KKQLQ FLG++ +A +I LA+ RK LK++VP+ WT+E M+ +K
Sbjct: 472 DTLEDKKQLQRFLGILTYASDYIPKLAQIRKPLQAKLKENVPWKWTKEDTLYMQKVKKNL 531
Query: 1511 ENLPKLSIPQDEDDLVLYTDASDHWWAAVLTKIT----PNGEEPCRYCSGLFQDNEAIRW 1678
+ P L P E+ L++ TDASD +W +L I N E CRY SG F+ E +
Sbjct: 532 QGFPPLHHPLPEEKLIIETDASDDYWGGMLKAIKINEGTNTELICRYASGSFKAAEK-NY 590
Query: 1679 HINEKEFFAVRKAFKKWPXXXXXXXXXXXXDNTQVKAFLKNKIESKPEKARLLRWQAECQ 1858
H N+KE AV KK+ DNT K+F+ + + R +RWQA
Sbjct: 591 HSNDKETLAVINTIKKFSIYLTPVHFLIRTDNTHFKSFVNLNYKGDSKLGRNIRWQAWLS 650
Query: 1859 YFIFDIVIVKSHENVLADFL 1918
++ FD+ +K +N ADFL
Sbjct: 651 HYSFDVEHIKGTDNHFADFL 670
>dbj|BAO53421.1| reverse transcriptase [Cauliflower mosaic virus]
Length = 679
Score = 360 bits (924), Expect = 1e-96
Identities = 206/620 (33%), Positives = 343/620 (55%), Gaps = 7/620 (1%)
Frame = +2
Query: 80 LILNKGVKMVEILIGGAGQTPWYKVKTPPIYFHDTGADILLGNNFLQMFKRYMQDNEQQR 259
+ ++K K ++++I G K P +Y ++G D ++GNNF Q+++ ++Q + R
Sbjct: 80 ITISKVCKDIDLIIAGE------IFKIPTVYQQESGIDFIIGNNFCQLYEPFIQFTD--R 131
Query: 260 LVFTTQCDHKIIVQRIKGAFNRQMPLAFRSKRGDEGQLRHPKMQDRRKFNEALLNYRIRG 439
++FT + + + ++ A + G EG L K + + + E +
Sbjct: 132 VIFTKNKSYPVHIAKLTRAV----------RVGTEGFLEAMKKRSKTQQPEPV------- 174
Query: 440 ALIDSEFEDNEAEIQCLKVSL-ISKDIESDSQVSLEDVKRKIVRCYNENPLAWWEKNQLR 616
+ ++ E+ EI L +S++ +Q ++ ++ + + +ENPL + N+ +
Sbjct: 175 NISTNKIENPLEEIAILSEGRRLSEEKLFITQQRMQKIEELLEKVCSENPL---DPNKTK 231
Query: 617 ATLKA--KPDKVNEFVRFRPILMNIKDQQDMKEIIKEHLDMKLIEPGNSPYSSPGFLVRN 790
+KA K ++ ++ +P+ + D+++ + IKE LD+K+I+P SP+ +P FLV N
Sbjct: 232 QWMKASIKLSDPSKAIKVKPMKYSPMDREEFDKQIKELLDLKVIKPSKSPHMAPAFLVNN 291
Query: 791 HGEIKRNKPRLVINYKGINDILEFDGYFILSREHLINCIRNAKVFSKFDCKSGFYQIRME 970
E +R K R+V+NYK +N D Y + +++ L+ IR K+FS FDCKSGF+Q+ ++
Sbjct: 292 EAEKRRGKKRMVVNYKAMNKATVGDAYNLPNKDELLTLIRGKKIFSSFDCKSGFWQVLLD 351
Query: 971 ERSKKFTAFSTPQGHYVWNVMPMGLANAPQIFQRKMDNLFKDYFSFMFVYIDDILITSKD 1150
+ S+ TAF+ PQGHY WNV+P GL AP IFQR MD F+ + F VY+DDIL+ S +
Sbjct: 352 QESRPLTAFTCPQGHYEWNVVPFGLKQAPSIFQRHMDEAFRVFRKFCCVYVDDILVFSNN 411
Query: 1151 INEHVKHLEIFADVCYKEGLVLSEKKAVIATRKMEFLGIEIDESGIILQDHIVQKVKNFS 1330
+H+ H+ + C + G++LS+KKA + +K+ FLG+EIDE Q HI++ + F
Sbjct: 412 EEDHLLHVAMILQKCNQHGIILSKKKAQLFKKKINFLGLEIDEGTHKPQGHILEHINKFP 471
Query: 1331 EDLKEKKQLQSFLGVVNFAGAFIKNLAKYRKVFSPLLKKDVPFIWTEEHRKGMRDLKVVC 1510
+ L++KKQLQ FLG++ +A +I LA+ RK LK++VP+ WT+E M+ +K
Sbjct: 472 DTLEDKKQLQRFLGILTYASDYIPKLAQIRKPLQAKLKENVPWKWTKEDTLYMQKVKKNL 531
Query: 1511 ENLPKLSIPQDEDDLVLYTDASDHWWAAVLTKIT----PNGEEPCRYCSGLFQDNEAIRW 1678
+ P L P E+ L++ TDASD +W +L I N E CRY SG F+ E +
Sbjct: 532 QGFPPLHHPLPEEKLIIETDASDDYWGGMLKAIKINEGTNTELICRYASGSFKAAER-NY 590
Query: 1679 HINEKEFFAVRKAFKKWPXXXXXXXXXXXXDNTQVKAFLKNKIESKPEKARLLRWQAECQ 1858
H N+KE AV KK+ DNT K+F+ + + R +RWQA
Sbjct: 591 HSNDKETLAVINTIKKFSIYLTPVHFLIRTDNTHFKSFVNLNYKGDSKLGRNIRWQAWLS 650
Query: 1859 YFIFDIVIVKSHENVLADFL 1918
++ FD+ +K +N ADFL
Sbjct: 651 HYSFDVEHIKGTDNHFADFL 670
>emb|CAA55974.1| unnamed protein product [Cauliflower mosaic virus]
Length = 680
Score = 360 bits (924), Expect = 1e-96
Identities = 206/620 (33%), Positives = 343/620 (55%), Gaps = 7/620 (1%)
Frame = +2
Query: 80 LILNKGVKMVEILIGGAGQTPWYKVKTPPIYFHDTGADILLGNNFLQMFKRYMQDNEQQR 259
+ ++K K ++++I G K P +Y ++G D ++GNNF Q+++ ++Q + R
Sbjct: 81 ITISKVCKDIDLIIAGE------IFKIPTVYQQESGIDFIIGNNFCQLYEPFIQFTD--R 132
Query: 260 LVFTTQCDHKIIVQRIKGAFNRQMPLAFRSKRGDEGQLRHPKMQDRRKFNEALLNYRIRG 439
++FT + + + ++ A + G EG L K + + + E +
Sbjct: 133 VIFTKNKSYPVHIAKLTRAV----------RVGTEGFLESMKKRSKTQQPEPV------- 175
Query: 440 ALIDSEFEDNEAEIQCLKVSL-ISKDIESDSQVSLEDVKRKIVRCYNENPLAWWEKNQLR 616
+ ++ E+ EI L +S++ +Q ++ ++ + + +ENPL + N+ +
Sbjct: 176 NISTNKIENPLEEIAILSEGRRLSEEKLFITQQRMQKIEELLEKVCSENPL---DPNKTK 232
Query: 617 ATLKA--KPDKVNEFVRFRPILMNIKDQQDMKEIIKEHLDMKLIEPGNSPYSSPGFLVRN 790
+KA K ++ ++ +P+ + D+++ + IKE LD+K+I+P SP+ +P FLV N
Sbjct: 233 QWMKASIKLSDPSKAIKVKPMKYSPMDREEFDKQIKELLDLKVIKPSKSPHMAPAFLVNN 292
Query: 791 HGEIKRNKPRLVINYKGINDILEFDGYFILSREHLINCIRNAKVFSKFDCKSGFYQIRME 970
E +R K R+V+NYK +N D Y + +++ L+ IR K+FS FDCKSGF+Q+ ++
Sbjct: 293 EAEKRRGKKRMVVNYKAMNKATIGDAYNLPNKDELLTLIRGKKIFSSFDCKSGFWQVLLD 352
Query: 971 ERSKKFTAFSTPQGHYVWNVMPMGLANAPQIFQRKMDNLFKDYFSFMFVYIDDILITSKD 1150
+ S+ TAF+ PQGHY WNV+P GL AP IFQR MD F+ + F VY+DDIL+ S +
Sbjct: 353 QESRPLTAFTCPQGHYEWNVVPFGLKQAPSIFQRHMDEAFRVFRKFCCVYVDDILVFSNN 412
Query: 1151 INEHVKHLEIFADVCYKEGLVLSEKKAVIATRKMEFLGIEIDESGIILQDHIVQKVKNFS 1330
+H+ H+ + C + G++LS+KKA + +K+ FLG+EIDE Q HI++ + F
Sbjct: 413 EEDHLLHVAMILQKCNQHGIILSKKKAQLFKKKINFLGLEIDEGTHKPQGHILEHINKFP 472
Query: 1331 EDLKEKKQLQSFLGVVNFAGAFIKNLAKYRKVFSPLLKKDVPFIWTEEHRKGMRDLKVVC 1510
+ L++KKQLQ FLG++ +A +I LA+ RK LK++VP+ WT+E M+ +K
Sbjct: 473 DTLEDKKQLQRFLGILTYASDYIPKLAQIRKPLQAKLKENVPWRWTKEDTLYMQKVKKNL 532
Query: 1511 ENLPKLSIPQDEDDLVLYTDASDHWWAAVLTKIT----PNGEEPCRYCSGLFQDNEAIRW 1678
+ P L P E+ L++ TDASD +W +L I N E CRY SG F+ E +
Sbjct: 533 QGFPPLHHPLPEEKLIIETDASDDYWGGMLKAIKINEGTNTELICRYASGSFKAAEK-NY 591
Query: 1679 HINEKEFFAVRKAFKKWPXXXXXXXXXXXXDNTQVKAFLKNKIESKPEKARLLRWQAECQ 1858
H N+KE AV KK+ DNT K+F+ + + R +RWQA
Sbjct: 592 HSNDKETLAVINTIKKFSIYLTPVHFLIRTDNTHFKSFVNLNYKGDSKLGRNIRWQAWLS 651
Query: 1859 YFIFDIVIVKSHENVLADFL 1918
++ FD+ +K +N ADFL
Sbjct: 652 HYSFDVEHIKGTDNHFADFL 671
>dbj|BAO53386.1| reverse transcriptase [Cauliflower mosaic virus]
Length = 678
Score = 360 bits (923), Expect = 2e-96
Identities = 205/619 (33%), Positives = 341/619 (55%), Gaps = 6/619 (0%)
Frame = +2
Query: 80 LILNKGVKMVEILIGGAGQTPWYKVKTPPIYFHDTGADILLGNNFLQMFKRYMQDNEQQR 259
+ ++K K ++++I G K P +Y ++G D ++GNNF Q+++ ++Q + R
Sbjct: 80 ITISKVCKDIDLIIAGE------IFKIPTVYQQESGIDFIIGNNFCQLYEPFIQFTD--R 131
Query: 260 LVFTTQCDHKIIVQRIKGAFNRQMPLAFRSKRGDEGQLRHPKMQDRRKFNEALLNYRIRG 439
++FT + + + ++ A + G EG L K + + + E +
Sbjct: 132 VIFTKNKTYPVHIAKLTKAV----------RIGTEGFLDSMKKRSKTQQPEPV------- 174
Query: 440 ALIDSEFEDNEAEIQCLKVSLISKDIESDSQVSLEDVKRKIVRCYNENPLAWWEKNQLRA 619
+ ++ E+ EI L ++ +Q ++ ++ + + +ENPL + N+ +
Sbjct: 175 NISTNKIENPLEEIAILSEGRRLEEKLFITQQRMQKIEELLEKVCSENPL---DPNKTKQ 231
Query: 620 TLKA--KPDKVNEFVRFRPILMNIKDQQDMKEIIKEHLDMKLIEPGNSPYSSPGFLVRNH 793
+KA K ++ ++ +P+ + D+++ + IKE LD+K+I+P SP+ +P FLV N
Sbjct: 232 WMKASIKLSDPSKAIKVKPMKYSPMDREEFDKQIKELLDLKVIKPSKSPHMAPAFLVNNE 291
Query: 794 GEIKRNKPRLVINYKGINDILEFDGYFILSREHLINCIRNAKVFSKFDCKSGFYQIRMEE 973
E +R K R+V+NYK +N D Y + +++ L+ IR K+FS FDCKSGF+Q+ +++
Sbjct: 292 AEKRRGKKRMVVNYKAMNKATVGDAYNLPNKDELLTLIRGKKIFSSFDCKSGFWQVLLDQ 351
Query: 974 RSKKFTAFSTPQGHYVWNVMPMGLANAPQIFQRKMDNLFKDYFSFMFVYIDDILITSKDI 1153
S+ TAF+ PQGHY WNV+P GL AP IFQR MD F+ + F VY+DDIL+ S +
Sbjct: 352 ESRPLTAFTCPQGHYEWNVVPFGLKQAPSIFQRHMDEAFRVFRKFCCVYVDDILVFSNNE 411
Query: 1154 NEHVKHLEIFADVCYKEGLVLSEKKAVIATRKMEFLGIEIDESGIILQDHIVQKVKNFSE 1333
+H+ H+ + C + G++LS+KKA + +K+ FLG+EIDE Q HI++ + F +
Sbjct: 412 EDHLLHVAMILQKCNQHGIILSKKKAQLFKKKINFLGLEIDEGTHKPQGHILEHINKFPD 471
Query: 1334 DLKEKKQLQSFLGVVNFAGAFIKNLAKYRKVFSPLLKKDVPFIWTEEHRKGMRDLKVVCE 1513
L++KKQLQ FLG++ +A +I LA+ RK LK++VP+ WT+E M+ +K +
Sbjct: 472 TLEDKKQLQRFLGILTYASDYIPKLAQIRKPLQAKLKENVPWKWTKEDTLYMQKVKKNLQ 531
Query: 1514 NLPKLSIPQDEDDLVLYTDASDHWWAAVLTKIT----PNGEEPCRYCSGLFQDNEAIRWH 1681
P L P E+ L++ TDASD +W +L I N E CRY SG F+ E +H
Sbjct: 532 GFPPLHHPLPEEKLIIETDASDDYWGGMLKAIKINEGTNTELICRYASGSFKAAER-NYH 590
Query: 1682 INEKEFFAVRKAFKKWPXXXXXXXXXXXXDNTQVKAFLKNKIESKPEKARLLRWQAECQY 1861
N+KE AV KK+ DNT K+F+ + + R +RWQA +
Sbjct: 591 SNDKETLAVINTIKKFSIYLTPVHFLIRTDNTHFKSFVNLNYKGDSKLGRNIRWQAWLSH 650
Query: 1862 FIFDIVIVKSHENVLADFL 1918
+ FD+ +K +N ADFL
Sbjct: 651 YSFDVEHIKGTDNHFADFL 669
>dbj|BAO53393.1| reverse transcriptase [Cauliflower mosaic virus]
gi|591288586|dbj|BAO53400.1| reverse transcriptase
[Cauliflower mosaic virus]
Length = 678
Score = 359 bits (922), Expect = 2e-96
Identities = 205/619 (33%), Positives = 340/619 (54%), Gaps = 6/619 (0%)
Frame = +2
Query: 80 LILNKGVKMVEILIGGAGQTPWYKVKTPPIYFHDTGADILLGNNFLQMFKRYMQDNEQQR 259
+ ++K K ++++I G K P +Y ++G D ++GNNF Q+++ ++Q + R
Sbjct: 80 ITISKVCKDIDLIIAGE------IFKIPTVYQQESGIDFIIGNNFCQLYEPFIQFTD--R 131
Query: 260 LVFTTQCDHKIIVQRIKGAFNRQMPLAFRSKRGDEGQLRHPKMQDRRKFNEALLNYRIRG 439
++FT + + + ++ A + G EG L K + + + E +
Sbjct: 132 VIFTKNKTYPVHIAKLTKAV----------RVGTEGFLDSMKKRSKTQQPEPV------- 174
Query: 440 ALIDSEFEDNEAEIQCLKVSLISKDIESDSQVSLEDVKRKIVRCYNENPLAWWEKNQLRA 619
+ ++ E+ EI L ++ +Q ++ ++ + + +ENPL + N+ +
Sbjct: 175 NISTNKIENPLEEIAILSEGRRLEEKLFITQQRMQKIEELLEKVCSENPL---DPNKTKQ 231
Query: 620 TLKA--KPDKVNEFVRFRPILMNIKDQQDMKEIIKEHLDMKLIEPGNSPYSSPGFLVRNH 793
+KA K ++ ++ +P+ + D+++ + IKE LD+K+I+P SP+ +P FLV N
Sbjct: 232 WMKASIKLSDPSKAIKVKPMKYSPMDREEFDKQIKELLDLKVIKPSKSPHMAPAFLVNNE 291
Query: 794 GEIKRNKPRLVINYKGINDILEFDGYFILSREHLINCIRNAKVFSKFDCKSGFYQIRMEE 973
E +R K R+V+NYK +N D Y + +++ L+ IR K+FS FDCKSGF+Q+ +++
Sbjct: 292 AEKRRGKKRMVVNYKAMNKATVGDAYNLPNKDELLTLIRGKKIFSSFDCKSGFWQVLLDQ 351
Query: 974 RSKKFTAFSTPQGHYVWNVMPMGLANAPQIFQRKMDNLFKDYFSFMFVYIDDILITSKDI 1153
S+ TAF+ PQGHY WNV+P GL AP IFQR MD F+ + F VY+DDIL+ S +
Sbjct: 352 ESRPLTAFTCPQGHYEWNVVPFGLKQAPSIFQRHMDEAFRVFRKFCCVYVDDILVFSNNE 411
Query: 1154 NEHVKHLEIFADVCYKEGLVLSEKKAVIATRKMEFLGIEIDESGIILQDHIVQKVKNFSE 1333
+H+ H+ + C + G++LS KKA + +K+ FLG+EIDE Q HI++ + F +
Sbjct: 412 EDHLLHVAMILQKCNQHGIILSRKKAQLFKKKINFLGLEIDEGTHKPQGHILEHINKFPD 471
Query: 1334 DLKEKKQLQSFLGVVNFAGAFIKNLAKYRKVFSPLLKKDVPFIWTEEHRKGMRDLKVVCE 1513
L++KKQLQ FLG++ +A +I LA+ RK LK++VP+ WT+E M+ +K +
Sbjct: 472 TLEDKKQLQRFLGILTYASDYIPKLAQIRKPLQAKLKENVPWKWTKEDTLYMQKVKKNLQ 531
Query: 1514 NLPKLSIPQDEDDLVLYTDASDHWWAAVLTKIT----PNGEEPCRYCSGLFQDNEAIRWH 1681
P L P E+ L++ TDASD +W +L I N E CRY SG F+ E +H
Sbjct: 532 GFPPLHHPLPEEKLIIETDASDDYWGGMLKAIKINEGTNTELICRYASGSFKAAEK-NYH 590
Query: 1682 INEKEFFAVRKAFKKWPXXXXXXXXXXXXDNTQVKAFLKNKIESKPEKARLLRWQAECQY 1861
N+KE AV KK+ DNT K+F+ + + R +RWQA +
Sbjct: 591 SNDKETLAVINTIKKFSIYLTPVHFLIRTDNTHFKSFVNLNYKGDSKLGRNIRWQAWLSH 650
Query: 1862 FIFDIVIVKSHENVLADFL 1918
+ FD+ +K +N ADFL
Sbjct: 651 YSFDVEHIKGTDNHFADFL 669
>sp|P03555.1|POL_CAMVC RecName: Full=Enzymatic polyprotein; Includes: RecName: Full=Aspartic
protease; Includes: RecName: Full=Endonuclease; Includes:
RecName: Full=Reverse transcriptase
Length = 679
Score = 359 bits (922), Expect = 2e-96
Identities = 206/620 (33%), Positives = 343/620 (55%), Gaps = 7/620 (1%)
Frame = +2
Query: 80 LILNKGVKMVEILIGGAGQTPWYKVKTPPIYFHDTGADILLGNNFLQMFKRYMQDNEQQR 259
+ ++K K ++++I G K P +Y ++G D ++GNNF Q+++ ++Q + R
Sbjct: 80 ITISKVCKDIDLIIAGE------IFKIPTVYQQESGIDFIIGNNFCQLYEPFIQFTD--R 131
Query: 260 LVFTTQCDHKIIVQRIKGAFNRQMPLAFRSKRGDEGQLRHPKMQDRRKFNEALLNYRIRG 439
++FT + + + ++ A + G EG L K + + + E +
Sbjct: 132 VIFTKNKSYPVHITKLTRAV----------RVGIEGFLESMKKRSKTQQPEPV------- 174
Query: 440 ALIDSEFEDNEAEIQCLKVSL-ISKDIESDSQVSLEDVKRKIVRCYNENPLAWWEKNQLR 616
+ ++ E+ EI L +S++ +Q ++ ++ + + +ENPL + N+ +
Sbjct: 175 NISTNKIENPLEEIAILSEGRRLSEEKLFITQQRMQKIEELLEKVCSENPL---DPNKTK 231
Query: 617 ATLKA--KPDKVNEFVRFRPILMNIKDQQDMKEIIKEHLDMKLIEPGNSPYSSPGFLVRN 790
+KA K ++ ++ +P+ + D+++ + IKE LD+K+I+P SP+ +P FLV N
Sbjct: 232 QWMKASIKLSDPSKAIKVKPMKYSPMDREEFDKQIKELLDLKVIKPSKSPHMAPAFLVNN 291
Query: 791 HGEIKRNKPRLVINYKGINDILEFDGYFILSREHLINCIRNAKVFSKFDCKSGFYQIRME 970
E +R K R+V+NYK +N D Y + +++ L+ IR K+FS FDCKSGF+Q+ ++
Sbjct: 292 EAEKRRGKKRMVVNYKAMNKATIGDAYNLPNKDELLTLIRGKKIFSSFDCKSGFWQVLLD 351
Query: 971 ERSKKFTAFSTPQGHYVWNVMPMGLANAPQIFQRKMDNLFKDYFSFMFVYIDDILITSKD 1150
+ S+ TAF+ PQGHY WNV+P GL AP IFQR MD F+ + F VY+DDIL+ S +
Sbjct: 352 QESRPLTAFTCPQGHYEWNVVPFGLKQAPSIFQRHMDEAFRVFRKFCCVYVDDILVFSNN 411
Query: 1151 INEHVKHLEIFADVCYKEGLVLSEKKAVIATRKMEFLGIEIDESGIILQDHIVQKVKNFS 1330
+H+ H+ + C + G++LS+KKA + +K+ FLG+EIDE Q HI++ + F
Sbjct: 412 EEDHLLHVAMILQKCNQHGIILSKKKAQLFKKKINFLGLEIDEGTHKPQGHILEHINKFP 471
Query: 1331 EDLKEKKQLQSFLGVVNFAGAFIKNLAKYRKVFSPLLKKDVPFIWTEEHRKGMRDLKVVC 1510
+ L++KKQLQ FLG++ +A +I LA+ RK LK++VP+ WT+E M+ +K
Sbjct: 472 DTLEDKKQLQRFLGILTYASDYIPKLAQIRKPLQAKLKENVPWKWTKEDTLYMQKVKKNL 531
Query: 1511 ENLPKLSIPQDEDDLVLYTDASDHWWAAVLTKIT----PNGEEPCRYCSGLFQDNEAIRW 1678
+ P L P E+ L++ TDASD +W +L I N E CRY SG F+ E +
Sbjct: 532 QGFPPLHHPLPEEKLIIETDASDDYWGGMLKAIKINEGTNTELICRYASGSFKAAER-NY 590
Query: 1679 HINEKEFFAVRKAFKKWPXXXXXXXXXXXXDNTQVKAFLKNKIESKPEKARLLRWQAECQ 1858
H N+KE AV KK+ DNT K+F+ + + R +RWQA
Sbjct: 591 HSNDKETLAVINTIKKFSIYLTPVHFLIRTDNTHFKSFVNLNYKGDSKLGRNIRWQAWLS 650
Query: 1859 YFIFDIVIVKSHENVLADFL 1918
++ FD+ +K +N ADFL
Sbjct: 651 HYSFDVEHIKGTDNHFADFL 670
>ref|NP_056728.1| reverse transcriptase [Cauliflower mosaic virus]
gi|130592|sp|P03554.1|POL_CAMVS RecName: Full=Enzymatic
polyprotein; Includes: RecName: Full=Aspartic protease;
Includes: RecName: Full=Endonuclease; Includes: RecName:
Full=Reverse transcriptase gi|58826|emb|CAA23460.1|
unnamed protein product [Cauliflower mosaic virus]
Length = 679
Score = 359 bits (922), Expect = 2e-96
Identities = 205/620 (33%), Positives = 343/620 (55%), Gaps = 7/620 (1%)
Frame = +2
Query: 80 LILNKGVKMVEILIGGAGQTPWYKVKTPPIYFHDTGADILLGNNFLQMFKRYMQDNEQQR 259
+ ++K K ++++I G + P +Y ++G D ++GNNF Q+++ ++Q + R
Sbjct: 80 ITISKVCKDIDLIIAGE------IFRIPTVYQQESGIDFIIGNNFCQLYEPFIQFTD--R 131
Query: 260 LVFTTQCDHKIIVQRIKGAFNRQMPLAFRSKRGDEGQLRHPKMQDRRKFNEALLNYRIRG 439
++FT + + + ++ A + G EG L K + + + E +
Sbjct: 132 VIFTKNKSYPVHIAKLTRAV----------RVGTEGFLESMKKRSKTQQPEPV------- 174
Query: 440 ALIDSEFEDNEAEIQCLKVSL-ISKDIESDSQVSLEDVKRKIVRCYNENPLAWWEKNQLR 616
+ ++ E+ EI L +S++ +Q ++ ++ + + +ENPL + N+ +
Sbjct: 175 NISTNKIENPLEEIAILSEGRRLSEEKLFITQQRMQKIEELLEKVCSENPL---DPNKTK 231
Query: 617 ATLKA--KPDKVNEFVRFRPILMNIKDQQDMKEIIKEHLDMKLIEPGNSPYSSPGFLVRN 790
+KA K ++ ++ +P+ + D+++ + IKE LD+K+I+P SP+ +P FLV N
Sbjct: 232 QWMKASIKLSDPSKAIKVKPMKYSPMDREEFDKQIKELLDLKVIKPSKSPHMAPAFLVNN 291
Query: 791 HGEIKRNKPRLVINYKGINDILEFDGYFILSREHLINCIRNAKVFSKFDCKSGFYQIRME 970
E +R K R+V+NYK +N D Y + +++ L+ IR K+FS FDCKSGF+Q+ ++
Sbjct: 292 EAEKRRGKKRMVVNYKAMNKATVGDAYNLPNKDELLTLIRGKKIFSSFDCKSGFWQVLLD 351
Query: 971 ERSKKFTAFSTPQGHYVWNVMPMGLANAPQIFQRKMDNLFKDYFSFMFVYIDDILITSKD 1150
+ S+ TAF+ PQGHY WNV+P GL AP IFQR MD F+ + F VY+DDIL+ S +
Sbjct: 352 QESRPLTAFTCPQGHYEWNVVPFGLKQAPSIFQRHMDEAFRVFRKFCCVYVDDILVFSNN 411
Query: 1151 INEHVKHLEIFADVCYKEGLVLSEKKAVIATRKMEFLGIEIDESGIILQDHIVQKVKNFS 1330
+H+ H+ + C + G++LS+KKA + +K+ FLG+EIDE Q HI++ + F
Sbjct: 412 EEDHLLHVAMILQKCNQHGIILSKKKAQLFKKKINFLGLEIDEGTHKPQGHILEHINKFP 471
Query: 1331 EDLKEKKQLQSFLGVVNFAGAFIKNLAKYRKVFSPLLKKDVPFIWTEEHRKGMRDLKVVC 1510
+ L++KKQLQ FLG++ +A +I LA+ RK LK++VP+ WT+E M+ +K
Sbjct: 472 DTLEDKKQLQRFLGILTYASDYIPKLAQIRKPLQAKLKENVPWRWTKEDTLYMQKVKKNL 531
Query: 1511 ENLPKLSIPQDEDDLVLYTDASDHWWAAVLTKIT----PNGEEPCRYCSGLFQDNEAIRW 1678
+ P L P E+ L++ TDASD +W +L I N E CRY SG F+ E +
Sbjct: 532 QGFPPLHHPLPEEKLIIETDASDDYWGGMLKAIKINEGTNTELICRYASGSFKAAEK-NY 590
Query: 1679 HINEKEFFAVRKAFKKWPXXXXXXXXXXXXDNTQVKAFLKNKIESKPEKARLLRWQAECQ 1858
H N+KE AV KK+ DNT K+F+ + + R +RWQA
Sbjct: 591 HSNDKETLAVINTIKKFSIYLTPVHFLIRTDNTHFKSFVNLNYKGDSKLGRNIRWQAWLS 650
Query: 1859 YFIFDIVIVKSHENVLADFL 1918
++ FD+ +K +N ADFL
Sbjct: 651 HYSFDVEHIKGTDNHFADFL 670
>sp|Q02964.1|POL_CAMVE RecName: Full=Enzymatic polyprotein; Includes: RecName: Full=Aspartic
protease; Includes: RecName: Full=Endonuclease; Includes:
RecName: Full=Reverse transcriptase
gi|293185|gb|AAA62375.1| reverse transcriptase
[Cauliflower mosaic virus]
Length = 679
Score = 358 bits (920), Expect = 4e-96
Identities = 202/595 (33%), Positives = 332/595 (55%), Gaps = 7/595 (1%)
Frame = +2
Query: 155 KTPPIYFHDTGADILLGNNFLQMFKRYMQDNEQQRLVFTTQCDHKIIVQRIKGAFNRQMP 334
K P +Y ++G D ++GNNF Q+++ ++Q + R++FT + + + ++ A
Sbjct: 99 KIPTVYQQESGIDFIIGNNFCQLYEPFIQFTD--RVIFTKNKSYPVHIAKLTRAV----- 151
Query: 335 LAFRSKRGDEGQLRHPKMQDRRKFNEALLNYRIRGALIDSEFEDNEAEIQCLKVSL-ISK 511
+ G EG L K + + + E + + ++ E+ EI L +S+
Sbjct: 152 -----RVGTEGFLESMKKRSKTQQPEPV-------NISTNKIENPLKEIAILSEGRRLSE 199
Query: 512 DIESDSQVSLEDVKRKIVRCYNENPLAWWEKNQLRATLKA--KPDKVNEFVRFRPILMNI 685
+ +Q ++ ++ + + +ENPL + N+ + +KA K ++ ++ +P+ +
Sbjct: 200 EKLFITQQRMQKIEELLEKVCSENPL---DPNKTKQWMKASIKLSDPSKAIKVKPMKYSP 256
Query: 686 KDQQDMKEIIKEHLDMKLIEPGNSPYSSPGFLVRNHGEIKRNKPRLVINYKGINDILEFD 865
D+++ + IKE LD+K+I+P SP+ +P FLV N E +R K R+V+NYK +N D
Sbjct: 257 MDREEFDKQIKELLDLKVIKPSKSPHMAPAFLVNNEAEKRRGKKRMVVNYKAMNKATIGD 316
Query: 866 GYFILSREHLINCIRNAKVFSKFDCKSGFYQIRMEERSKKFTAFSTPQGHYVWNVMPMGL 1045
Y + +++ L+ IR K+FS FDCKSGF+Q+ +++ S+ TAF+ PQGHY WNV+P GL
Sbjct: 317 AYNLPNKDELLTLIRGKKIFSSFDCKSGFWQVLLDQESRPLTAFTCPQGHYEWNVVPFGL 376
Query: 1046 ANAPQIFQRKMDNLFKDYFSFMFVYIDDILITSKDINEHVKHLEIFADVCYKEGLVLSEK 1225
AP IFQR MD F+ + F VY+DDIL+ S + +H+ H+ + C + G++LS+K
Sbjct: 377 KQAPSIFQRHMDEAFRVFRKFCCVYVDDILVFSNNEEDHLLHVAMILQKCNQHGIILSKK 436
Query: 1226 KAVIATRKMEFLGIEIDESGIILQDHIVQKVKNFSEDLKEKKQLQSFLGVVNFAGAFIKN 1405
KA + +K+ FLG+EIDE Q HI++ + F + L++KKQLQ FLG++ +A +I
Sbjct: 437 KAQLFKKKINFLGLEIDEGTHKPQGHILEHINKFPDTLEDKKQLQRFLGILTYASDYIPK 496
Query: 1406 LAKYRKVFSPLLKKDVPFIWTEEHRKGMRDLKVVCENLPKLSIPQDEDDLVLYTDASDHW 1585
LA+ RK LK++VP+ WT+E M+ +K + P L P E+ L++ TDASD +
Sbjct: 497 LAQIRKPLQAKLKENVPWKWTKEDTLYMQKVKKNLQGFPPLHHPLPEEKLIIETDASDDY 556
Query: 1586 WAAVLTKIT----PNGEEPCRYCSGLFQDNEAIRWHINEKEFFAVRKAFKKWPXXXXXXX 1753
W +L I N E CRY SG F+ E +H N+KE AV KK+
Sbjct: 557 WGGMLKAIKINEGTNTELICRYASGSFKAAER-NYHSNDKETLAVINTIKKFSIYLTPVH 615
Query: 1754 XXXXXDNTQVKAFLKNKIESKPEKARLLRWQAECQYFIFDIVIVKSHENVLADFL 1918
DNT K+F+ + + R +RWQA ++ FD+ +K +N ADFL
Sbjct: 616 FLIRTDNTHFKSFVNLNYKGDSKLGRNIRWQAWLSHYSFDVEHIKGTDNHFADFL 670
>gb|AAA21736.1| reverse transcriptase [Cauliflower mosaic virus]
Length = 680
Score = 358 bits (918), Expect = 6e-96
Identities = 205/620 (33%), Positives = 340/620 (54%), Gaps = 7/620 (1%)
Frame = +2
Query: 80 LILNKGVKMVEILIGGAGQTPWYKVKTPPIYFHDTGADILLGNNFLQMFKRYMQDNEQQR 259
+ ++K K ++++I G K P +Y ++G D ++GNNF Q+++ ++Q + R
Sbjct: 81 ITISKVCKDIDLIIAGE------IFKIPTVYQQESGIDFIIGNNFCQLYEPFIQFTD--R 132
Query: 260 LVFTTQCDHKIIVQRIKGAFNRQMPLAFRSKRGDEGQLRHPKMQDRRKFNEALLNYRIRG 439
++F + + + + A + G EG L K + + + E +
Sbjct: 133 VIFAKNKSYPVHIANVTRAV----------RVGTEGFLESMKKRSKTQQPEPV------- 175
Query: 440 ALIDSEFEDNEAEIQCLKVSL-ISKDIESDSQVSLEDVKRKIVRCYNENPLAWWEKNQLR 616
+ ++ E+ EI L +S++ +Q ++ ++ + + +ENPL + N+ +
Sbjct: 176 NISTNKIENPLEEIAILSEGRRLSEEKLFITQQRMQKIEELLEKVCSENPL---DPNKTK 232
Query: 617 ATLKA--KPDKVNEFVRFRPILMNIKDQQDMKEIIKEHLDMKLIEPGNSPYSSPGFLVRN 790
+KA K N+ ++ +P+ + D+++ + IKE LD+K+I+P SP+ +P FLV N
Sbjct: 233 QWMKASIKLSDPNKAIKVKPMKYSPMDREEFDKQIKELLDLKVIKPSKSPHMAPAFLVNN 292
Query: 791 HGEIKRNKPRLVINYKGINDILEFDGYFILSREHLINCIRNAKVFSKFDCKSGFYQIRME 970
E +R K R+V+NYK +N D Y + +++ L+ IR K+FS FDCKSGF+Q+ ++
Sbjct: 293 EAEKRRGKKRMVVNYKAMNKATVGDAYNLPNKDELLTLIRGKKIFSSFDCKSGFWQVLLD 352
Query: 971 ERSKKFTAFSTPQGHYVWNVMPMGLANAPQIFQRKMDNLFKDYFSFMFVYIDDILITSKD 1150
+ S+ TAF+ PQGHY WNV+P GL AP IFQR MD F+ + F VY+DDIL+ S +
Sbjct: 353 QESRPLTAFTCPQGHYEWNVVPFGLKQAPSIFQRHMDEAFRVFRKFCCVYVDDILVFSNN 412
Query: 1151 INEHVKHLEIFADVCYKEGLVLSEKKAVIATRKMEFLGIEIDESGIILQDHIVQKVKNFS 1330
+H+ H+ + C + G++LS+KKA + +K+ FLG+EIDE Q HI++ + F
Sbjct: 413 EEDHLLHVAMILQKCNQHGIILSKKKAQLFKKKINFLGLEIDEGTHKPQGHILEHINKFP 472
Query: 1331 EDLKEKKQLQSFLGVVNFAGAFIKNLAKYRKVFSPLLKKDVPFIWTEEHRKGMRDLKVVC 1510
+ L++KKQLQ FLG++ +A +I LA+ RK LK++VP+ WT+E M+ +K
Sbjct: 473 DTLEDKKQLQRFLGILTYASDYIPKLAQIRKPLQAKLKENVPWKWTKEDTLYMQKVKKNL 532
Query: 1511 ENLPKLSIPQDEDDLVLYTDASDHWWAAVLTKIT----PNGEEPCRYCSGLFQDNEAIRW 1678
+ P L P E+ L++ TDASD +W +L I N E CRY SG F+ E +
Sbjct: 533 QGFPPLHHPLPEEKLIIETDASDDYWGGMLKAIKINEGINTELICRYASGSFKAAER-NY 591
Query: 1679 HINEKEFFAVRKAFKKWPXXXXXXXXXXXXDNTQVKAFLKNKIESKPEKARLLRWQAECQ 1858
H N+KE AV KK+ DNT K+F+ + + R +RWQA
Sbjct: 592 HSNDKETLAVINTIKKFSIYLTPAHFLTRTDNTHFKSFVNLNYKGDSKLGRNIRWQAWLN 651
Query: 1859 YFIFDIVIVKSHENVLADFL 1918
++ FD+ +K +N DFL
Sbjct: 652 HYSFDVEHIKGTDNHFVDFL 671
>dbj|BAO53547.1| reverse transcriptase [Cauliflower mosaic virus]
Length = 674
Score = 357 bits (915), Expect = 1e-95
Identities = 205/619 (33%), Positives = 338/619 (54%), Gaps = 6/619 (0%)
Frame = +2
Query: 80 LILNKGVKMVEILIGGAGQTPWYKVKTPPIYFHDTGADILLGNNFLQMFKRYMQDNEQQR 259
+ +NK K ++++I G P +Y ++G D ++GNNF Q+++ ++Q + R
Sbjct: 82 ITINKVCKDIDLIIAGE------IFHIPTVYQQESGIDFIIGNNFCQLYEPFIQFTD--R 133
Query: 260 LVFTTQCDHKIIVQRIKGAFNRQMPLAFRSKRGDEGQLRHPKMQDRRKFNEALLNYRIRG 439
++FT + + + ++ A + G EG L K + + + E + N
Sbjct: 134 VIFTKDRTYPVHIAKLTRAV----------RVGTEGFLESMKKRSKTQQPEPV-NISTNK 182
Query: 440 ALIDSEFEDNEAEIQCLKVSLISKDIESDSQVSLEDVKRKIVRCYNENPLAWWEKNQLRA 619
+ SE +S++ +Q ++ ++ + + +ENPL + N+ +
Sbjct: 183 IAVLSEGRR------------LSEEKLFITQQRMQKIEELLEKVCSENPL---DPNKTKQ 227
Query: 620 TLKA--KPDKVNEFVRFRPILMNIKDQQDMKEIIKEHLDMKLIEPGNSPYSSPGFLVRNH 793
+KA K ++ ++ +P+ + D+++ + IKE LD+K+I+P SP+ +P FLV N
Sbjct: 228 WMKASIKLSDPSKAIKVKPMKYSPMDREEFDKQIKELLDLKVIKPSKSPHMAPAFLVNNE 287
Query: 794 GEIKRNKPRLVINYKGINDILEFDGYFILSREHLINCIRNAKVFSKFDCKSGFYQIRMEE 973
E +R K R+V+NYK +N D Y + +++ L+ IR K+FS FDCKSGF+Q+ +++
Sbjct: 288 AEKRRGKKRMVVNYKAMNKATVGDAYNLPNKDELLTLIRGKKIFSSFDCKSGFWQVLLDQ 347
Query: 974 RSKKFTAFSTPQGHYVWNVMPMGLANAPQIFQRKMDNLFKDYFSFMFVYIDDILITSKDI 1153
S+ TAF+ PQGHY WNV+P GL AP IFQR MD F+ + F VY+DDIL+ S +
Sbjct: 348 ESRPLTAFTCPQGHYEWNVVPFGLKQAPSIFQRHMDEAFRVFRKFCCVYVDDILVFSNNE 407
Query: 1154 NEHVKHLEIFADVCYKEGLVLSEKKAVIATRKMEFLGIEIDESGIILQDHIVQKVKNFSE 1333
+H+ H+ + C + G++LS+KKA + +K+ FLG+EIDE Q HI++ + F +
Sbjct: 408 EDHLLHVAMILQKCNQHGIILSKKKAQLFKKKINFLGLEIDEGTHKPQGHILEHINKFPD 467
Query: 1334 DLKEKKQLQSFLGVVNFAGAFIKNLAKYRKVFSPLLKKDVPFIWTEEHRKGMRDLKVVCE 1513
L++KKQLQ FLG++ +A +I LA+ RK LK++VP+ WT+E M+ +K +
Sbjct: 468 TLEDKKQLQRFLGILTYASDYISKLAQIRKPLQAKLKENVPWKWTKEDTLYMQKVKKNLQ 527
Query: 1514 NLPKLSIPQDEDDLVLYTDASDHWWAAVLTKIT----PNGEEPCRYCSGLFQDNEAIRWH 1681
P L P E+ L++ TDASD +W +L I N E CRY SG F+ E +H
Sbjct: 528 GFPPLHHPLPEEKLIIETDASDDYWGGMLKAIKINEGTNTELICRYASGSFKAAEK-NYH 586
Query: 1682 INEKEFFAVRKAFKKWPXXXXXXXXXXXXDNTQVKAFLKNKIESKPEKARLLRWQAECQY 1861
N+KE AV KK+ DNT K+F+ + + R +RWQA +
Sbjct: 587 SNDKETLAVINTIKKFSIYLTPVHFLIRTDNTHFKSFVNLNYKGDSKLGRNIRWQAWLSH 646
Query: 1862 FIFDIVIVKSHENVLADFL 1918
+ FD+ +K +N ADFL
Sbjct: 647 YSFDVEHIKGTDNHFADFL 665
>dbj|BAO53456.1| reverse transcriptase [Cauliflower mosaic virus]
Length = 674
Score = 357 bits (915), Expect = 1e-95
Identities = 206/619 (33%), Positives = 338/619 (54%), Gaps = 6/619 (0%)
Frame = +2
Query: 80 LILNKGVKMVEILIGGAGQTPWYKVKTPPIYFHDTGADILLGNNFLQMFKRYMQDNEQQR 259
+ +NK K ++++I G P +Y ++G D ++GNNF Q+++ ++Q + R
Sbjct: 82 ITINKVCKDIDLIIAGE------IFHIPTVYQQESGIDFIIGNNFCQLYEPFIQFTD--R 133
Query: 260 LVFTTQCDHKIIVQRIKGAFNRQMPLAFRSKRGDEGQLRHPKMQDRRKFNEALLNYRIRG 439
++FT + + + ++ A + G EG L K + + + E + N
Sbjct: 134 VIFTKDRTYPVHIAKLTRAV----------RVGTEGFLESMKKRSKTQQPEPV-NISTNK 182
Query: 440 ALIDSEFEDNEAEIQCLKVSLISKDIESDSQVSLEDVKRKIVRCYNENPLAWWEKNQLRA 619
I SE +S++ +Q ++ ++ + + +ENPL + N+ +
Sbjct: 183 IAILSEGRR------------LSEEKLFITQQRMQKIEELLEKVCSENPL---DPNKTKQ 227
Query: 620 TLKA--KPDKVNEFVRFRPILMNIKDQQDMKEIIKEHLDMKLIEPGNSPYSSPGFLVRNH 793
+KA K ++ ++ +P+ + D+++ + IKE LD+K+I+P SP+ +P FLV N
Sbjct: 228 WMKASIKLSDPSKAIKVKPMKYSPMDREEFDKQIKELLDLKVIKPSKSPHMAPAFLVNNE 287
Query: 794 GEIKRNKPRLVINYKGINDILEFDGYFILSREHLINCIRNAKVFSKFDCKSGFYQIRMEE 973
E +R K R+V+NYK +N D Y + +++ L+ IR K+FS FDCKSGF+Q+ +++
Sbjct: 288 AEKRRGKKRMVVNYKAMNKATVGDAYNLPNKDELLTLIRGKKIFSSFDCKSGFWQVLLDQ 347
Query: 974 RSKKFTAFSTPQGHYVWNVMPMGLANAPQIFQRKMDNLFKDYFSFMFVYIDDILITSKDI 1153
S+ TAF+ PQGHY WNV+P GL AP IFQR MD F+ + F VY+DDIL+ S +
Sbjct: 348 ESRPLTAFTCPQGHYEWNVVPFGLKQAPSIFQRHMDEAFRVFRKFCCVYVDDILVFSNNE 407
Query: 1154 NEHVKHLEIFADVCYKEGLVLSEKKAVIATRKMEFLGIEIDESGIILQDHIVQKVKNFSE 1333
+H+ H+ + C + G++LS+KKA + +K+ FLG+EIDE Q HI++ + F +
Sbjct: 408 EDHLLHVAMILQKCNQHGIILSKKKAQLFKKKINFLGLEIDEGTHKPQGHILEHINKFPD 467
Query: 1334 DLKEKKQLQSFLGVVNFAGAFIKNLAKYRKVFSPLLKKDVPFIWTEEHRKGMRDLKVVCE 1513
L++KKQLQ FLG++ +A +I LA+ RK LK++VP+ WT+E M+ +K +
Sbjct: 468 TLEDKKQLQRFLGILTYASDYIPKLAQIRKPLQAKLKENVPWKWTKEDTLYMQKVKKNLQ 527
Query: 1514 NLPKLSIPQDEDDLVLYTDASDHWWAAVLTKIT----PNGEEPCRYCSGLFQDNEAIRWH 1681
P L P E+ L++ TDASD +W +L I N E CRY SG F+ E +H
Sbjct: 528 GFPPLHHPLPEEKLIIETDASDDYWGGMLKAIKINEGTNTELICRYASGSFKAAEK-NYH 586
Query: 1682 INEKEFFAVRKAFKKWPXXXXXXXXXXXXDNTQVKAFLKNKIESKPEKARLLRWQAECQY 1861
N+KE AV KK+ DNT K+F+ + + R +RWQA +
Sbjct: 587 SNDKETLAVINTIKKFSIYLTPVHFLIRTDNTHFKSFVNLNYKGDSKLGRNIRWQAWLSH 646
Query: 1862 FIFDIVIVKSHENVLADFL 1918
+ FD+ +K +N ADFL
Sbjct: 647 YSFDVEHIKGTDNHFADFL 665
>dbj|BAO53680.1| reverse transcriptase [Cauliflower mosaic virus]
Length = 674
Score = 356 bits (914), Expect = 2e-95
Identities = 205/619 (33%), Positives = 339/619 (54%), Gaps = 6/619 (0%)
Frame = +2
Query: 80 LILNKGVKMVEILIGGAGQTPWYKVKTPPIYFHDTGADILLGNNFLQMFKRYMQDNEQQR 259
+ +NK + ++++I G P +Y ++G D ++GNNF Q+++ ++Q + R
Sbjct: 82 ITINKVCRDIDLIIAGE------IFHIPTVYQQESGIDFIIGNNFCQLYEPFIQFTD--R 133
Query: 260 LVFTTQCDHKIIVQRIKGAFNRQMPLAFRSKRGDEGQLRHPKMQDRRKFNEALLNYRIRG 439
++FT + + + ++ A + G EG L K + + + E + N
Sbjct: 134 VIFTKDRTYPVHIAKLTRAV----------RVGTEGFLESMKKRSKTQQPEPV-NISTNK 182
Query: 440 ALIDSEFEDNEAEIQCLKVSLISKDIESDSQVSLEDVKRKIVRCYNENPLAWWEKNQLRA 619
I SE +S++ +Q ++ ++ + + +ENPL + N+ +
Sbjct: 183 IAILSEGRR------------LSEEKLFITQQRMQKIEELLEKVCSENPL---DPNKTKQ 227
Query: 620 TLKA--KPDKVNEFVRFRPILMNIKDQQDMKEIIKEHLDMKLIEPGNSPYSSPGFLVRNH 793
+KA K ++ ++ +P+ + D+++ + IKE LD+K+I+P SP+ +P FLV N
Sbjct: 228 WMKASIKLSDPSKAIKVKPMKYSPMDREEFDKQIKELLDLKVIKPSKSPHMAPAFLVNNE 287
Query: 794 GEIKRNKPRLVINYKGINDILEFDGYFILSREHLINCIRNAKVFSKFDCKSGFYQIRMEE 973
E +R K R+V+NYK +N D Y + +++ L+ IR K+FS FDCKSGF+Q+ +++
Sbjct: 288 AEKRRGKKRMVVNYKAMNKATVGDAYNLPNKDELLTLIRGKKIFSSFDCKSGFWQVLLDQ 347
Query: 974 RSKKFTAFSTPQGHYVWNVMPMGLANAPQIFQRKMDNLFKDYFSFMFVYIDDILITSKDI 1153
S+ TAF+ PQGHY WNV+P GL AP IFQR MD F+ + F VY+DDIL+ S +
Sbjct: 348 ESRPLTAFTCPQGHYEWNVVPFGLKQAPSIFQRHMDEAFRVFRKFCCVYVDDILVFSNNE 407
Query: 1154 NEHVKHLEIFADVCYKEGLVLSEKKAVIATRKMEFLGIEIDESGIILQDHIVQKVKNFSE 1333
+H+ H+ + C + G++LS+KKA + +K+ FLG+EIDE Q HI++ + F +
Sbjct: 408 EDHLLHVAMILQKCNQHGIILSKKKAQLFKKKINFLGLEIDEGTHKPQGHILEHINKFPD 467
Query: 1334 DLKEKKQLQSFLGVVNFAGAFIKNLAKYRKVFSPLLKKDVPFIWTEEHRKGMRDLKVVCE 1513
L++KKQLQ FLG++ +A +I LA+ RK LK++VP+ WT+E M+ +K +
Sbjct: 468 TLEDKKQLQRFLGILTYASDYIPKLAQIRKPLQAKLKENVPWKWTKEDTLYMQKVKKNLQ 527
Query: 1514 NLPKLSIPQDEDDLVLYTDASDHWWAAVLTKI----TPNGEEPCRYCSGLFQDNEAIRWH 1681
P L P E+ L++ TDASD +W +L I + N E CRY SG F+ E +H
Sbjct: 528 GFPPLHHPLPEEKLIIETDASDDYWGGMLKAIQINESANTELICRYASGSFKAAEK-NYH 586
Query: 1682 INEKEFFAVRKAFKKWPXXXXXXXXXXXXDNTQVKAFLKNKIESKPEKARLLRWQAECQY 1861
N+KE AV KK+ DNT K+F+ + + R +RWQA +
Sbjct: 587 SNDKETLAVINTIKKFSIYLTPVHFLIRTDNTHFKSFVNLNYKGDSKLGRNIRWQAWLSH 646
Query: 1862 FIFDIVIVKSHENVLADFL 1918
+ FD+ +K +N ADFL
Sbjct: 647 YSFDVEHIKGTDNHFADFL 665
>dbj|BAO53435.1| reverse transcriptase [Cauliflower mosaic virus]
Length = 674
Score = 356 bits (914), Expect = 2e-95
Identities = 205/619 (33%), Positives = 339/619 (54%), Gaps = 6/619 (0%)
Frame = +2
Query: 80 LILNKGVKMVEILIGGAGQTPWYKVKTPPIYFHDTGADILLGNNFLQMFKRYMQDNEQQR 259
+ +NK + ++++I G P +Y ++G D ++GNNF Q+++ ++Q + R
Sbjct: 82 ITINKVCRDIDLIIAGE------IFHIPTVYQQESGIDFIIGNNFCQLYEPFIQFTD--R 133
Query: 260 LVFTTQCDHKIIVQRIKGAFNRQMPLAFRSKRGDEGQLRHPKMQDRRKFNEALLNYRIRG 439
++FT + + + ++ A + G EG L K + + + E + N
Sbjct: 134 VIFTKDRTYPVHIAKLTRAV----------RVGTEGFLESMKKRSKTQQPEPV-NISTNK 182
Query: 440 ALIDSEFEDNEAEIQCLKVSLISKDIESDSQVSLEDVKRKIVRCYNENPLAWWEKNQLRA 619
I SE +S++ +Q ++ ++ + + +ENPL + N+ +
Sbjct: 183 IAILSEGRR------------LSEEKLFITQQRMQKIEELLEKVCSENPL---DPNKTKQ 227
Query: 620 TLKA--KPDKVNEFVRFRPILMNIKDQQDMKEIIKEHLDMKLIEPGNSPYSSPGFLVRNH 793
+KA K ++ ++ +P+ + D+++ + IKE LD+K+I+P SP+ +P FLV N
Sbjct: 228 WMKASIKLSDPSKAIKVKPMKYSPMDREEFDKQIKELLDLKVIKPSKSPHMAPAFLVNNE 287
Query: 794 GEIKRNKPRLVINYKGINDILEFDGYFILSREHLINCIRNAKVFSKFDCKSGFYQIRMEE 973
E +R K R+V+NYK +N D Y + +++ L+ IR K+FS FDCKSGF+Q+ +++
Sbjct: 288 AEKRRGKKRMVVNYKAMNKATVGDAYNLPNKDELLTLIRGKKIFSSFDCKSGFWQVLLDQ 347
Query: 974 RSKKFTAFSTPQGHYVWNVMPMGLANAPQIFQRKMDNLFKDYFSFMFVYIDDILITSKDI 1153
S+ TAF+ PQGHY WNV+P GL AP IFQR MD F+ + F VY+DDIL+ S +
Sbjct: 348 ESRPLTAFTCPQGHYEWNVVPFGLKQAPSIFQRHMDEAFRVFRKFCCVYVDDILVFSNNE 407
Query: 1154 NEHVKHLEIFADVCYKEGLVLSEKKAVIATRKMEFLGIEIDESGIILQDHIVQKVKNFSE 1333
+H+ H+ + C + G++LS+KKA + +K+ FLG+EIDE Q HI++ + F +
Sbjct: 408 EDHLLHVAMILQKCNQHGIILSKKKAQLFKKKINFLGLEIDEGTHKPQGHILEHINKFPD 467
Query: 1334 DLKEKKQLQSFLGVVNFAGAFIKNLAKYRKVFSPLLKKDVPFIWTEEHRKGMRDLKVVCE 1513
L++KKQLQ FLG++ +A +I LA+ RK LK++VP+ WT+E M+ +K +
Sbjct: 468 TLEDKKQLQRFLGILTYASDYIPKLAQIRKPLQAKLKENVPWKWTKEDTLYMQKVKKNLQ 527
Query: 1514 NLPKLSIPQDEDDLVLYTDASDHWWAAVLTKIT----PNGEEPCRYCSGLFQDNEAIRWH 1681
P L P E+ L++ TDASD++W +L I N E CRY SG F+ E +H
Sbjct: 528 GFPPLHHPLPEEKLIIETDASDNYWGGMLKAIKINEGTNTELICRYASGSFKAAEK-NYH 586
Query: 1682 INEKEFFAVRKAFKKWPXXXXXXXXXXXXDNTQVKAFLKNKIESKPEKARLLRWQAECQY 1861
N+KE AV KK+ DNT K+F+ + + R +RWQA +
Sbjct: 587 SNDKETLAVINTIKKFSIYLTPVHFLIRTDNTHFKSFVNLNYKGDSKLGRNIRWQAWLSH 646
Query: 1862 FIFDIVIVKSHENVLADFL 1918
+ FD+ +K +N ADFL
Sbjct: 647 YSFDVEHIKGTDNHFADFL 665
>dbj|BAO53554.1| reverse transcriptase [Cauliflower mosaic virus]
Length = 674
Score = 356 bits (913), Expect = 2e-95
Identities = 205/619 (33%), Positives = 338/619 (54%), Gaps = 6/619 (0%)
Frame = +2
Query: 80 LILNKGVKMVEILIGGAGQTPWYKVKTPPIYFHDTGADILLGNNFLQMFKRYMQDNEQQR 259
+ +NK K ++++I G P +Y ++G D ++GNNF Q+++ ++Q + R
Sbjct: 82 ITINKVCKDIDLIIAGE------IFHIPTVYQQESGIDFIIGNNFCQLYEPFIQFTD--R 133
Query: 260 LVFTTQCDHKIIVQRIKGAFNRQMPLAFRSKRGDEGQLRHPKMQDRRKFNEALLNYRIRG 439
++FT + + + ++ A + G EG L K + + + E + N
Sbjct: 134 VIFTKDRTYPVHIAKLTRAV----------RVGTEGFLESMKKRSKTQQPEPV-NISTNK 182
Query: 440 ALIDSEFEDNEAEIQCLKVSLISKDIESDSQVSLEDVKRKIVRCYNENPLAWWEKNQLRA 619
+ SE +S++ +Q ++ ++ + + +ENPL + N+ +
Sbjct: 183 IAVLSEGRR------------LSEEKLFITQQRMQKIEELLEKVCSENPL---DPNKTKQ 227
Query: 620 TLKA--KPDKVNEFVRFRPILMNIKDQQDMKEIIKEHLDMKLIEPGNSPYSSPGFLVRNH 793
+KA K ++ ++ +P+ + D+++ + IKE LD+K+I+P SP+ +P FLV N
Sbjct: 228 WMKASIKLSDPSKAIKVKPMKYSPMDREEFDKQIKELLDLKVIKPSKSPHMAPAFLVNNE 287
Query: 794 GEIKRNKPRLVINYKGINDILEFDGYFILSREHLINCIRNAKVFSKFDCKSGFYQIRMEE 973
E +R K R+V+NYK +N D Y + +++ L+ IR K+FS FDCKSGF+Q+ +++
Sbjct: 288 AEKRRGKKRMVVNYKAMNKATIGDAYNLPNKDELLTLIRGKKIFSSFDCKSGFWQVLLDQ 347
Query: 974 RSKKFTAFSTPQGHYVWNVMPMGLANAPQIFQRKMDNLFKDYFSFMFVYIDDILITSKDI 1153
S+ TAF+ PQGHY WNV+P GL AP IFQR MD F+ + F VY+DDIL+ S +
Sbjct: 348 ESRPLTAFTCPQGHYEWNVVPFGLKQAPSIFQRHMDEAFRVFRKFCCVYVDDILVFSNNE 407
Query: 1154 NEHVKHLEIFADVCYKEGLVLSEKKAVIATRKMEFLGIEIDESGIILQDHIVQKVKNFSE 1333
+H+ H+ + C + G++LS+KKA + +K+ FLG+EIDE Q HI++ + F +
Sbjct: 408 EDHLLHVAMILQKCNQHGIILSKKKAQLFKKKINFLGLEIDEGTHKPQGHILEHINKFPD 467
Query: 1334 DLKEKKQLQSFLGVVNFAGAFIKNLAKYRKVFSPLLKKDVPFIWTEEHRKGMRDLKVVCE 1513
L++KKQLQ FLG++ +A +I LA+ RK LK++VP+ WT+E M+ +K +
Sbjct: 468 TLEDKKQLQRFLGILTYASDYIPKLAQIRKPLQAKLKENVPWKWTKEDTLYMQKVKKNLQ 527
Query: 1514 NLPKLSIPQDEDDLVLYTDASDHWWAAVLTKIT----PNGEEPCRYCSGLFQDNEAIRWH 1681
P L P E+ L++ TDASD +W +L I N E CRY SG F+ E +H
Sbjct: 528 GFPPLHHPLPEEKLIIETDASDDYWGGMLKAIKINEGTNTELICRYASGSFKAAEK-NYH 586
Query: 1682 INEKEFFAVRKAFKKWPXXXXXXXXXXXXDNTQVKAFLKNKIESKPEKARLLRWQAECQY 1861
N+KE AV KK+ DNT K+F+ + + R +RWQA +
Sbjct: 587 SNDKETLAVINTIKKFSIYLTPVHFLIRTDNTHFKSFVNLNYKGDSKLGRNIRWQAWLSH 646
Query: 1862 FIFDIVIVKSHENVLADFL 1918
+ FD+ +K +N ADFL
Sbjct: 647 YSFDVEHIKGTDNHFADFL 665
>dbj|BAO53505.1| reverse transcriptase [Cauliflower mosaic virus]
Length = 674
Score = 356 bits (913), Expect = 2e-95
Identities = 204/619 (32%), Positives = 338/619 (54%), Gaps = 6/619 (0%)
Frame = +2
Query: 80 LILNKGVKMVEILIGGAGQTPWYKVKTPPIYFHDTGADILLGNNFLQMFKRYMQDNEQQR 259
+ +NK + ++++I G P +Y ++G D ++GNNF Q+++ ++Q + R
Sbjct: 82 ITINKVCRNIDLIIAGE------IFHIPTVYQQESGIDFIIGNNFCQLYEPFIQFTD--R 133
Query: 260 LVFTTQCDHKIIVQRIKGAFNRQMPLAFRSKRGDEGQLRHPKMQDRRKFNEALLNYRIRG 439
++FT + + + ++ A + G EG L K + + + E + N
Sbjct: 134 VIFTKDRTYPVHIAKLTRAV----------RVGTEGFLESMKKRSKTQQPEPV-NISTNK 182
Query: 440 ALIDSEFEDNEAEIQCLKVSLISKDIESDSQVSLEDVKRKIVRCYNENPLAWWEKNQLRA 619
+ SE +S++ +Q ++ ++ + + +ENPL + N+ +
Sbjct: 183 IAVLSEGRR------------LSEEKLFITQQRMQKIEELLEKVCSENPL---DPNKTKQ 227
Query: 620 TLKA--KPDKVNEFVRFRPILMNIKDQQDMKEIIKEHLDMKLIEPGNSPYSSPGFLVRNH 793
+KA K ++ ++ +P+ + D+++ + IKE LD+K+I+P SP+ +P FLV N
Sbjct: 228 WMKASIKLSDPSKAIKVKPMKYSPMDREEFDKQIKELLDLKVIKPSKSPHMAPAFLVNNE 287
Query: 794 GEIKRNKPRLVINYKGINDILEFDGYFILSREHLINCIRNAKVFSKFDCKSGFYQIRMEE 973
E +R K R+V+NYK +N D Y + +++ L+ IR K+FS FDCKSGF+Q+ +++
Sbjct: 288 AEKRRGKKRMVVNYKAMNKATIGDAYNLPNKDELLTLIRGKKIFSSFDCKSGFWQVLLDQ 347
Query: 974 RSKKFTAFSTPQGHYVWNVMPMGLANAPQIFQRKMDNLFKDYFSFMFVYIDDILITSKDI 1153
S+ TAF+ PQGHY WNV+P GL AP IFQR MD F+ + F VY+DDIL+ S +
Sbjct: 348 ESRPLTAFTCPQGHYEWNVVPFGLKQAPSIFQRHMDEAFRVFRKFCCVYVDDILVFSNNE 407
Query: 1154 NEHVKHLEIFADVCYKEGLVLSEKKAVIATRKMEFLGIEIDESGIILQDHIVQKVKNFSE 1333
+H+ H+ + C + G++LS+KKA + +K+ FLG+EIDE Q HI++ + F +
Sbjct: 408 EDHLLHVAMILQKCNQHGIILSKKKAQLFKKKINFLGLEIDEGTHKPQGHILEHINKFPD 467
Query: 1334 DLKEKKQLQSFLGVVNFAGAFIKNLAKYRKVFSPLLKKDVPFIWTEEHRKGMRDLKVVCE 1513
L++KKQLQ FLG++ +A +I LA+ RK LK++VP+ WT+E M+ +K +
Sbjct: 468 TLEDKKQLQRFLGILTYASDYIPKLAQIRKPLQAKLKENVPWKWTKEDTLYMQKVKKNLQ 527
Query: 1514 NLPKLSIPQDEDDLVLYTDASDHWWAAVLTKIT----PNGEEPCRYCSGLFQDNEAIRWH 1681
P L P E+ L++ TDASD +W +L I N E CRY SG F+ E +H
Sbjct: 528 GFPPLHHPLPEEKLIIETDASDDYWGGMLKAIKINEGTNTELICRYASGSFKAAEK-NYH 586
Query: 1682 INEKEFFAVRKAFKKWPXXXXXXXXXXXXDNTQVKAFLKNKIESKPEKARLLRWQAECQY 1861
N+KE AV KK+ DNT K+F+ + + R +RWQA +
Sbjct: 587 SNDKETLAVINTIKKFSIYLTPVHFLIRTDNTHFKSFVNLNYKGDSKLGRNIRWQAWLSH 646
Query: 1862 FIFDIVIVKSHENVLADFL 1918
+ FD+ +K +N ADFL
Sbjct: 647 YSFDVEHIKGTDNYFADFL 665
>dbj|BAO53659.1| reverse transcriptase [Cauliflower mosaic virus]
Length = 674
Score = 355 bits (912), Expect = 3e-95
Identities = 205/619 (33%), Positives = 338/619 (54%), Gaps = 6/619 (0%)
Frame = +2
Query: 80 LILNKGVKMVEILIGGAGQTPWYKVKTPPIYFHDTGADILLGNNFLQMFKRYMQDNEQQR 259
+ +NK + ++++I G P +Y ++G D ++GNNF Q+++ ++Q + R
Sbjct: 82 ITINKVCRDIDLIIAGE------IFHIPTVYQQESGIDFIIGNNFCQLYEPFIQFTD--R 133
Query: 260 LVFTTQCDHKIIVQRIKGAFNRQMPLAFRSKRGDEGQLRHPKMQDRRKFNEALLNYRIRG 439
++FT + + + ++ A + G EG L K + + + E + N
Sbjct: 134 VIFTKDRTYPVHIAKLTRAV----------RVGTEGFLESMKKRSKTQQPEPV-NISTNK 182
Query: 440 ALIDSEFEDNEAEIQCLKVSLISKDIESDSQVSLEDVKRKIVRCYNENPLAWWEKNQLRA 619
I SE +S++ +Q ++ ++ + + +ENPL + N+ +
Sbjct: 183 IAILSEGRR------------LSEEKLFITQQRMQKIEELLEKVCSENPL---DPNKTKQ 227
Query: 620 TLKA--KPDKVNEFVRFRPILMNIKDQQDMKEIIKEHLDMKLIEPGNSPYSSPGFLVRNH 793
+KA K ++ ++ +P+ + D+++ + IKE LD+K+I+P SP+ +P FLV N
Sbjct: 228 WMKASIKLSDPSKAIKVKPMKYSPMDREEFDKQIKELLDLKVIKPSKSPHMAPAFLVNNE 287
Query: 794 GEIKRNKPRLVINYKGINDILEFDGYFILSREHLINCIRNAKVFSKFDCKSGFYQIRMEE 973
E +R K R+V+NYK +N D Y + +++ L+ IR K+FS FDCKSGF+Q+ +++
Sbjct: 288 AEKRRGKKRMVVNYKAMNKATVGDAYNLPNKDELLTLIRGKKIFSSFDCKSGFWQVLLDQ 347
Query: 974 RSKKFTAFSTPQGHYVWNVMPMGLANAPQIFQRKMDNLFKDYFSFMFVYIDDILITSKDI 1153
S+ TAF+ PQGHY WNV+P GL AP IFQR MD F+ + F VY+DDIL+ S +
Sbjct: 348 ESRPLTAFTCPQGHYEWNVVPFGLKQAPSIFQRHMDEAFRVFRKFCCVYVDDILVFSNNE 407
Query: 1154 NEHVKHLEIFADVCYKEGLVLSEKKAVIATRKMEFLGIEIDESGIILQDHIVQKVKNFSE 1333
+H+ H+ + C + G++LS+KKA + +K+ FLG+EIDE Q HI++ + F +
Sbjct: 408 EDHLLHVAMILQKCNQHGIILSKKKAQLFKKKINFLGLEIDEGTHKPQGHILEHINKFPD 467
Query: 1334 DLKEKKQLQSFLGVVNFAGAFIKNLAKYRKVFSPLLKKDVPFIWTEEHRKGMRDLKVVCE 1513
L++KKQLQ FLG++ +A +I LA+ RK LK++VP+ WT+E M+ +K +
Sbjct: 468 TLEDKKQLQRFLGILTYASDYIPKLAQIRKPLQAKLKENVPWKWTKEDTLYMQKVKKNLQ 527
Query: 1514 NLPKLSIPQDEDDLVLYTDASDHWWAAVLTKIT----PNGEEPCRYCSGLFQDNEAIRWH 1681
P L P E+ L++ TDASD +W +L I N E CRY SG F+ E +H
Sbjct: 528 GFPPLHHPLPEEKLIIETDASDDYWGGMLKAIKINKGTNTELICRYASGSFKAAEK-NYH 586
Query: 1682 INEKEFFAVRKAFKKWPXXXXXXXXXXXXDNTQVKAFLKNKIESKPEKARLLRWQAECQY 1861
N+KE AV KK+ DNT K+F+ + + R +RWQA +
Sbjct: 587 SNDKETLAVINTIKKFSIYLTPVHFLIRTDNTHFKSFVNLNYKGDSKLGRNIRWQAWLSH 646
Query: 1862 FIFDIVIVKSHENVLADFL 1918
+ FD+ +K +N ADFL
Sbjct: 647 YSFDVEHIKGTDNHFADFL 665