BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Mentha29_contig00014942
         (892 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|EYU17563.1| hypothetical protein MIMGU_mgv1a006781mg [Mimulus...   349   9e-94
gb|EYU17562.1| hypothetical protein MIMGU_mgv1a006781mg [Mimulus...   348   2e-93
ref|XP_003634352.1| PREDICTED: RNA pseudourine synthase 2, chlor...   326   8e-87
emb|CAN66750.1| hypothetical protein VITISV_034413 [Vitis vinifera]   323   4e-86
ref|XP_004238386.1| PREDICTED: RNA pseudourine synthase 2, chlor...   323   7e-86
ref|XP_007017900.1| Pseudouridine synthase family protein isofor...   322   9e-86
ref|XP_006342081.1| PREDICTED: RNA pseudouridine synthase 2, chl...   320   5e-85
ref|XP_003603819.1| RNA pseudourine synthase [Medicago truncatul...   317   3e-84
ref|XP_006473714.1| PREDICTED: RNA pseudouridine synthase 2, chl...   317   5e-84
ref|XP_007136120.1| hypothetical protein PHAVU_009G019500g [Phas...   313   4e-83
ref|XP_007136119.1| hypothetical protein PHAVU_009G019500g [Phas...   313   4e-83
ref|XP_003523282.1| PREDICTED: RNA pseudouridine synthase 2, chl...   311   2e-82
ref|XP_002301949.1| pseudouridine synthase family protein [Popul...   308   1e-81
ref|XP_004500918.1| PREDICTED: RNA pseudourine synthase 2, chlor...   308   2e-81
ref|XP_006390244.1| hypothetical protein EUTSA_v10018588mg [Eutr...   307   3e-81
ref|NP_001058594.1| Os06g0717400 [Oryza sativa Japonica Group] g...   306   5e-81
gb|EEC81320.1| hypothetical protein OsI_24484 [Oryza sativa Indi...   306   5e-81
ref|XP_006656497.1| PREDICTED: RNA pseudouridine synthase 2, chl...   305   2e-80
ref|XP_004143077.1| PREDICTED: RNA pseudourine synthase 2, chlor...   302   1e-79
ref|XP_006302277.1| hypothetical protein CARUB_v10020321mg [Caps...   298   1e-78

>gb|EYU17563.1| hypothetical protein MIMGU_mgv1a006781mg [Mimulus guttatus]
          Length = 422

 Score =  349 bits (895), Expect = 9e-94
 Identities = 177/246 (71%), Positives = 199/246 (80%), Gaps = 2/246 (0%)
 Frame = -3

Query: 890 DSLPET--DDDSGDEISALSLDQGHDGDIGFGLSEASVRPGIVHRLDKGTSGLLVVAKDE 717
           +SLP+   DDDS DE +                SE+SVRPGIVHRLDKGTSGLLVVAKDE
Sbjct: 190 ESLPDNIDDDDSIDEATVFP-------------SESSVRPGIVHRLDKGTSGLLVVAKDE 236

Query: 716 QSHSHLSEQFKKRTIKRVYISLTCGVPGPLSGRVDVPVGRDVNNRIRMIATPGSSTHGRF 537
            SHSHL+EQFKK T+KRVY+SLTCGVP P+SGRVD+P+GRD NNRIRM+A PGS+ HG+ 
Sbjct: 237 HSHSHLAEQFKKHTVKRVYVSLTCGVPSPVSGRVDIPIGRDSNNRIRMVAIPGSALHGKA 296

Query: 536 RHAASRYKVIEILAGGGCALVEWRLETGRTHQIRAHAKYLGIPLLGDDVYGGTKSMCLSL 357
           RHA SRYKV+EILAGGGCALVEWRLETGRTHQIRAHAKYLGIPLLGDDVYGGTK M LS 
Sbjct: 297 RHAVSRYKVVEILAGGGCALVEWRLETGRTHQIRAHAKYLGIPLLGDDVYGGTKHMALSQ 356

Query: 356 LQSKNPSSYNSQFLELVAGLERPCLHALTLGFNHPKTGENLSFSQLPPSDFADILLRLRS 177
           LQSKN SSY  Q  +LVA LERP LHAL+LGF HP  GE+L FSQ+PP DFA+IL  LR+
Sbjct: 357 LQSKNSSSYYGQIHQLVAKLERPSLHALSLGFRHPHKGEDLHFSQMPPFDFAEILDCLRN 416

Query: 176 IGAQKV 159
           I ++KV
Sbjct: 417 ISSEKV 422


>gb|EYU17562.1| hypothetical protein MIMGU_mgv1a006781mg [Mimulus guttatus]
          Length = 432

 Score =  348 bits (892), Expect = 2e-93
 Identities = 176/246 (71%), Positives = 199/246 (80%), Gaps = 2/246 (0%)
 Frame = -3

Query: 890 DSLPET--DDDSGDEISALSLDQGHDGDIGFGLSEASVRPGIVHRLDKGTSGLLVVAKDE 717
           +SLP+   DDDS DE +                SE+SVRPGIVHRLDKGTSGLLVVAKDE
Sbjct: 190 ESLPDNIDDDDSIDEATVFP-------------SESSVRPGIVHRLDKGTSGLLVVAKDE 236

Query: 716 QSHSHLSEQFKKRTIKRVYISLTCGVPGPLSGRVDVPVGRDVNNRIRMIATPGSSTHGRF 537
            SHSHL+EQFKK T+KRVY+SLTCGVP P+SGRVD+P+GRD NNRIRM+A PGS+ HG+ 
Sbjct: 237 HSHSHLAEQFKKHTVKRVYVSLTCGVPSPVSGRVDIPIGRDSNNRIRMVAIPGSALHGKA 296

Query: 536 RHAASRYKVIEILAGGGCALVEWRLETGRTHQIRAHAKYLGIPLLGDDVYGGTKSMCLSL 357
           RHA SRYKV+EILAGGGCALVEWRLETGRTHQIRAHAKYLGIPLLGDDVYGGTK M LS 
Sbjct: 297 RHAVSRYKVVEILAGGGCALVEWRLETGRTHQIRAHAKYLGIPLLGDDVYGGTKHMALSQ 356

Query: 356 LQSKNPSSYNSQFLELVAGLERPCLHALTLGFNHPKTGENLSFSQLPPSDFADILLRLRS 177
           LQSKN SSY  Q  +LVA LERP LHAL+LGF HP  GE+L FSQ+PP DFA+IL  LR+
Sbjct: 357 LQSKNSSSYYGQIHQLVAKLERPSLHALSLGFRHPHKGEDLHFSQMPPFDFAEILDCLRN 416

Query: 176 IGAQKV 159
           I ++K+
Sbjct: 417 ISSEKM 422


>ref|XP_003634352.1| PREDICTED: RNA pseudourine synthase 2, chloroplastic-like [Vitis
           vinifera] gi|302141717|emb|CBI18920.3| unnamed protein
           product [Vitis vinifera]
          Length = 433

 Score =  326 bits (835), Expect = 8e-87
 Identities = 165/239 (69%), Positives = 189/239 (79%)
 Frame = -3

Query: 878 ETDDDSGDEISALSLDQGHDGDIGFGLSEASVRPGIVHRLDKGTSGLLVVAKDEQSHSHL 699
           E DD S DE ++ +  Q        G  E ++RPGIVHRLDKGTSGLLVVAKDE SH+HL
Sbjct: 195 EEDDISDDEFNSFAAGQN------CGTCETNIRPGIVHRLDKGTSGLLVVAKDEHSHAHL 248

Query: 698 SEQFKKRTIKRVYISLTCGVPGPLSGRVDVPVGRDVNNRIRMIATPGSSTHGRFRHAASR 519
           SEQFK  +I RVYISLT GVP PLSGRV++PVGRD NNRIRM A PG S  G+ RHAASR
Sbjct: 249 SEQFKLHSIHRVYISLTSGVPTPLSGRVEIPVGRDPNNRIRMTAVPGPSNSGQARHAASR 308

Query: 518 YKVIEILAGGGCALVEWRLETGRTHQIRAHAKYLGIPLLGDDVYGGTKSMCLSLLQSKNP 339
           YKVIEILA GG ALVEWRLETGRTHQIRAHAKYLGIPLLGD+VYGGTK+M LSLL+ + P
Sbjct: 309 YKVIEILAAGGSALVEWRLETGRTHQIRAHAKYLGIPLLGDEVYGGTKNMALSLLRPRIP 368

Query: 338 SSYNSQFLELVAGLERPCLHALTLGFNHPKTGENLSFSQLPPSDFADILLRLRSIGAQK 162
           SS++ Q  +LV+ L+RPCLHA+ LGFNHPKTG+N+ FS  PP DFA+IL  LR I  +K
Sbjct: 369 SSHHGQLAQLVSRLDRPCLHAVALGFNHPKTGKNVHFSCQPPEDFAEILSWLRKISTEK 427


>emb|CAN66750.1| hypothetical protein VITISV_034413 [Vitis vinifera]
          Length = 611

 Score =  323 bits (829), Expect = 4e-86
 Identities = 164/239 (68%), Positives = 188/239 (78%)
 Frame = -3

Query: 878  ETDDDSGDEISALSLDQGHDGDIGFGLSEASVRPGIVHRLDKGTSGLLVVAKDEQSHSHL 699
            E DD   DE ++ +  Q        G  E ++RPGIVHRLDKGTSGLLVVAKDE SH+HL
Sbjct: 341  EEDDILDDEFNSFAAGQN------CGTCETNIRPGIVHRLDKGTSGLLVVAKDEHSHAHL 394

Query: 698  SEQFKKRTIKRVYISLTCGVPGPLSGRVDVPVGRDVNNRIRMIATPGSSTHGRFRHAASR 519
            SEQFK  +I RVYISLT GVP PLSGRV++PVGRD NNRIRM A PG S  G+ RHAASR
Sbjct: 395  SEQFKLHSIHRVYISLTSGVPTPLSGRVEIPVGRDPNNRIRMTAVPGPSNSGQARHAASR 454

Query: 518  YKVIEILAGGGCALVEWRLETGRTHQIRAHAKYLGIPLLGDDVYGGTKSMCLSLLQSKNP 339
            YKVIEILA GG ALVEWRLETGRTHQIRAHAKYLGIPLLGD+VYGGTK+M LSLL+ + P
Sbjct: 455  YKVIEILAAGGSALVEWRLETGRTHQIRAHAKYLGIPLLGDEVYGGTKNMALSLLRPRIP 514

Query: 338  SSYNSQFLELVAGLERPCLHALTLGFNHPKTGENLSFSQLPPSDFADILLRLRSIGAQK 162
            SS++ Q  +LV+ L+RPCLHA+ LGFNHPKTG+N+ FS  PP DFA+IL  LR I  +K
Sbjct: 515  SSHHGQLAQLVSRLDRPCLHAVALGFNHPKTGKNVHFSCQPPEDFAEILSWLRKISTEK 573


>ref|XP_004238386.1| PREDICTED: RNA pseudourine synthase 2, chloroplastic-like [Solanum
           lycopersicum]
          Length = 436

 Score =  323 bits (827), Expect = 7e-86
 Identities = 158/243 (65%), Positives = 195/243 (80%)
 Frame = -3

Query: 884 LPETDDDSGDEISALSLDQGHDGDIGFGLSEASVRPGIVHRLDKGTSGLLVVAKDEQSHS 705
           L + +D S DE++  S ++  + D    + E+SVRPGIVHRLDKGTSGLLVVAK+E S +
Sbjct: 189 LSDGEDASDDELNIFSPNRSPNYDDSSVMCESSVRPGIVHRLDKGTSGLLVVAKNEHSLA 248

Query: 704 HLSEQFKKRTIKRVYISLTCGVPGPLSGRVDVPVGRDVNNRIRMIATPGSSTHGRFRHAA 525
            L+EQFKK TIKRVY+S+TCGVP  ++GRVD+P+GRD NNRIRM A PG+   G+ RHA 
Sbjct: 249 DLAEQFKKHTIKRVYVSITCGVPASVAGRVDIPIGRDSNNRIRMAAIPGTPKSGKSRHAV 308

Query: 524 SRYKVIEILAGGGCALVEWRLETGRTHQIRAHAKYLGIPLLGDDVYGGTKSMCLSLLQSK 345
           SRYKVIE LAGGG ALVEWRLETGRTHQIRAHAK+LGIPL+GD+VYGGTK+M LSLLQ K
Sbjct: 309 SRYKVIEKLAGGGSALVEWRLETGRTHQIRAHAKHLGIPLMGDEVYGGTKNMALSLLQPK 368

Query: 344 NPSSYNSQFLELVAGLERPCLHALTLGFNHPKTGENLSFSQLPPSDFADILLRLRSIGAQ 165
            P  ++ +  +LV+ ++RPCLHALTLGF HP TGEN+ F++LPP DFA+IL  LR+I  +
Sbjct: 369 TPPMFHGELSQLVSQIDRPCLHALTLGFRHPFTGENIHFTRLPPPDFAEILSELRAIKTE 428

Query: 164 KVT 156
           KVT
Sbjct: 429 KVT 431


>ref|XP_007017900.1| Pseudouridine synthase family protein isoform 1 [Theobroma cacao]
           gi|508723228|gb|EOY15125.1| Pseudouridine synthase
           family protein isoform 1 [Theobroma cacao]
          Length = 433

 Score =  322 bits (826), Expect = 9e-86
 Identities = 161/225 (71%), Positives = 182/225 (80%), Gaps = 3/225 (1%)
 Frame = -3

Query: 821 DGDIGF---GLSEASVRPGIVHRLDKGTSGLLVVAKDEQSHSHLSEQFKKRTIKRVYISL 651
           D D GF     + ASVRPGIVHRLDKGTSGLLVVAKDE SHSHLSEQFK+ TI+RVYISL
Sbjct: 206 DDDEGFCYGASAAASVRPGIVHRLDKGTSGLLVVAKDEHSHSHLSEQFKQHTIQRVYISL 265

Query: 650 TCGVPGPLSGRVDVPVGRDVNNRIRMIATPGSSTHGRFRHAASRYKVIEILAGGGCALVE 471
           TCGVP P +GRVD+ +GRD NNR+RMIA PG + HGR RHAASRYKVIE+LAGGG AL++
Sbjct: 266 TCGVPSPSAGRVDISIGRDSNNRVRMIAVPGLNHHGRARHAASRYKVIEVLAGGGSALIQ 325

Query: 470 WRLETGRTHQIRAHAKYLGIPLLGDDVYGGTKSMCLSLLQSKNPSSYNSQFLELVAGLER 291
           WRLETGRTHQIRAHAKY+GIPLLGD+VYGGTKSM LSLL+ + P +YN Q   LV+ LER
Sbjct: 326 WRLETGRTHQIRAHAKYMGIPLLGDEVYGGTKSMALSLLRPRTPPNYNDQLSRLVSRLER 385

Query: 290 PCLHALTLGFNHPKTGENLSFSQLPPSDFADILLRLRSIGAQKVT 156
           P LHAL LGF HP + E + FS  PP DFA+IL  LR IG +K T
Sbjct: 386 PYLHALVLGFEHPHSREMMHFSCQPPPDFAEILSDLRKIGTEKPT 430


>ref|XP_006342081.1| PREDICTED: RNA pseudouridine synthase 2, chloroplastic-like
           [Solanum tuberosum]
          Length = 431

 Score =  320 bits (820), Expect = 5e-85
 Identities = 157/242 (64%), Positives = 193/242 (79%)
 Frame = -3

Query: 884 LPETDDDSGDEISALSLDQGHDGDIGFGLSEASVRPGIVHRLDKGTSGLLVVAKDEQSHS 705
           L + +D S DE++  S ++  + D    + E+SVRPGIVHRLDKGTSGLLVVAK+E S +
Sbjct: 189 LSDAEDASDDELNVFSGNRSPNYDDSSVMCESSVRPGIVHRLDKGTSGLLVVAKNENSLA 248

Query: 704 HLSEQFKKRTIKRVYISLTCGVPGPLSGRVDVPVGRDVNNRIRMIATPGSSTHGRFRHAA 525
            L+EQFKK TIKRVY+S+TCGVP  ++GRVD+P+GRD NNRIRM A PG+   G+ RHA 
Sbjct: 249 SLAEQFKKHTIKRVYVSITCGVPASVAGRVDIPIGRDSNNRIRMAAIPGTPKSGKSRHAV 308

Query: 524 SRYKVIEILAGGGCALVEWRLETGRTHQIRAHAKYLGIPLLGDDVYGGTKSMCLSLLQSK 345
           SRYKVIE LA GG ALVEWRLETGRTHQIRAHAKYLGIPL+GD+VYGGTK+M LSLLQ K
Sbjct: 309 SRYKVIEKLARGGSALVEWRLETGRTHQIRAHAKYLGIPLMGDEVYGGTKNMALSLLQPK 368

Query: 344 NPSSYNSQFLELVAGLERPCLHALTLGFNHPKTGENLSFSQLPPSDFADILLRLRSIGAQ 165
            P  ++ +  +LV+ ++RPCLHALTLGF HP TGEN+ F++LPP DFA+IL  LR+I  +
Sbjct: 369 TPPMFHGKLSQLVSQIDRPCLHALTLGFRHPFTGENIHFTRLPPPDFAEILSYLRAINTE 428

Query: 164 KV 159
           KV
Sbjct: 429 KV 430


>ref|XP_003603819.1| RNA pseudourine synthase [Medicago truncatula]
           gi|355492867|gb|AES74070.1| RNA pseudourine synthase
           [Medicago truncatula]
          Length = 465

 Score =  317 bits (813), Expect = 3e-84
 Identities = 161/245 (65%), Positives = 191/245 (77%)
 Frame = -3

Query: 890 DSLPETDDDSGDEISALSLDQGHDGDIGFGLSEASVRPGIVHRLDKGTSGLLVVAKDEQS 711
           ++L +T+D S DE++  S        +   LS AS+RPGIVHRLDKGTSGLLVVAK+E S
Sbjct: 211 EALSDTED-SDDELNGFSSQSSSSVGLDSRLSMASIRPGIVHRLDKGTSGLLVVAKNEHS 269

Query: 710 HSHLSEQFKKRTIKRVYISLTCGVPGPLSGRVDVPVGRDVNNRIRMIATPGSSTHGRFRH 531
           H  LSEQFK RTIKRVY+SLT GVP P+SGRV+VPVGRD NNR+RMIA  G     + RH
Sbjct: 270 HMKLSEQFKLRTIKRVYVSLTAGVPTPVSGRVEVPVGRDPNNRLRMIAVAGLVNSVKARH 329

Query: 530 AASRYKVIEILAGGGCALVEWRLETGRTHQIRAHAKYLGIPLLGDDVYGGTKSMCLSLLQ 351
           AASRYKVIEILAGG CALVEW+LETGRTHQIRAHAKYLG+PLLGD+VYGGTKSM LSLL+
Sbjct: 330 AASRYKVIEILAGGSCALVEWKLETGRTHQIRAHAKYLGVPLLGDEVYGGTKSMVLSLLR 389

Query: 350 SKNPSSYNSQFLELVAGLERPCLHALTLGFNHPKTGENLSFSQLPPSDFADILLRLRSIG 171
            +   S +S+  + V+GL+RPCLHA TLGF HP TGE + FS  PP DF DIL +LR IG
Sbjct: 390 PRTTPSLHSEMFKTVSGLDRPCLHASTLGFQHPHTGEQVHFSCEPPVDFNDILSQLRRIG 449

Query: 170 AQKVT 156
           ++ ++
Sbjct: 450 SESIS 454


>ref|XP_006473714.1| PREDICTED: RNA pseudouridine synthase 2, chloroplastic-like [Citrus
           sinensis]
          Length = 421

 Score =  317 bits (811), Expect = 5e-84
 Identities = 161/244 (65%), Positives = 190/244 (77%)
 Frame = -3

Query: 887 SLPETDDDSGDEISALSLDQGHDGDIGFGLSEASVRPGIVHRLDKGTSGLLVVAKDEQSH 708
           SLP T   S  E  + + D   D +    +S AS+RPGIVHRLDKGTSGLLVVAKDE SH
Sbjct: 177 SLP-TLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAKDEHSH 235

Query: 707 SHLSEQFKKRTIKRVYISLTCGVPGPLSGRVDVPVGRDVNNRIRMIATPGSSTHGRFRHA 528
           +HLSEQFK  TI+RVYISLT GVP   SGR++VP+ RD NNRIRM A PGS+ HG+ RHA
Sbjct: 236 AHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSNKHGQARHA 295

Query: 527 ASRYKVIEILAGGGCALVEWRLETGRTHQIRAHAKYLGIPLLGDDVYGGTKSMCLSLLQS 348
           ASRYKVIEILAGGG ALVEWRLETGRTHQIRAHAKY+GIPLLGD+VYGGTK+M  SLLQ 
Sbjct: 296 ASRYKVIEILAGGGSALVEWRLETGRTHQIRAHAKYMGIPLLGDEVYGGTKNMAKSLLQP 355

Query: 347 KNPSSYNSQFLELVAGLERPCLHALTLGFNHPKTGENLSFSQLPPSDFADILLRLRSIGA 168
           +     + + L+LV+GL+RPCLHA+ LGF HP T E + FS  PP+DFA+IL +LR IG 
Sbjct: 356 RTAPGSHGKVLKLVSGLQRPCLHAVALGFTHPHTREKIQFSCPPPADFAEILSQLREIGT 415

Query: 167 QKVT 156
           +K++
Sbjct: 416 EKLS 419


>ref|XP_007136120.1| hypothetical protein PHAVU_009G019500g [Phaseolus vulgaris]
           gi|561009207|gb|ESW08114.1| hypothetical protein
           PHAVU_009G019500g [Phaseolus vulgaris]
          Length = 447

 Score =  313 bits (803), Expect = 4e-83
 Identities = 159/245 (64%), Positives = 192/245 (78%)
 Frame = -3

Query: 890 DSLPETDDDSGDEISALSLDQGHDGDIGFGLSEASVRPGIVHRLDKGTSGLLVVAKDEQS 711
           + L +T+D   +  S  SL    +G      S +S+RPGIVHRLDKGTSGLLVVAKDE S
Sbjct: 197 EGLSDTEDCDDEVNSYGSLASSCEGSHSRP-SMSSIRPGIVHRLDKGTSGLLVVAKDEHS 255

Query: 710 HSHLSEQFKKRTIKRVYISLTCGVPGPLSGRVDVPVGRDVNNRIRMIATPGSSTHGRFRH 531
           H  LSEQFK+RTIKRVY+SLT GVP P+SGRVDVPVGRD+NNR+RM A  G     + RH
Sbjct: 256 HMKLSEQFKQRTIKRVYVSLTAGVPRPISGRVDVPVGRDLNNRLRMTAVAGPVNSRKARH 315

Query: 530 AASRYKVIEILAGGGCALVEWRLETGRTHQIRAHAKYLGIPLLGDDVYGGTKSMCLSLLQ 351
           AASRYKVIEILAGG C+LVEW+LETGRTHQIRAHAKYLG+PLLGD+VYGGTKSM LSLL+
Sbjct: 316 AASRYKVIEILAGGSCSLVEWKLETGRTHQIRAHAKYLGVPLLGDEVYGGTKSMVLSLLR 375

Query: 350 SKNPSSYNSQFLELVAGLERPCLHALTLGFNHPKTGENLSFSQLPPSDFADILLRLRSIG 171
            ++P S + + +++V+ L+RPCLHALTLGF HP TGE + FS  PP DF +IL +LR IG
Sbjct: 376 PRSPISLHGKIVQMVSSLDRPCLHALTLGFQHPHTGEQVHFSCEPPVDFDEILSQLRRIG 435

Query: 170 AQKVT 156
           ++ V+
Sbjct: 436 SESVS 440


>ref|XP_007136119.1| hypothetical protein PHAVU_009G019500g [Phaseolus vulgaris]
           gi|561009206|gb|ESW08113.1| hypothetical protein
           PHAVU_009G019500g [Phaseolus vulgaris]
          Length = 458

 Score =  313 bits (803), Expect = 4e-83
 Identities = 159/245 (64%), Positives = 192/245 (78%)
 Frame = -3

Query: 890 DSLPETDDDSGDEISALSLDQGHDGDIGFGLSEASVRPGIVHRLDKGTSGLLVVAKDEQS 711
           + L +T+D   +  S  SL    +G      S +S+RPGIVHRLDKGTSGLLVVAKDE S
Sbjct: 208 EGLSDTEDCDDEVNSYGSLASSCEGSHSRP-SMSSIRPGIVHRLDKGTSGLLVVAKDEHS 266

Query: 710 HSHLSEQFKKRTIKRVYISLTCGVPGPLSGRVDVPVGRDVNNRIRMIATPGSSTHGRFRH 531
           H  LSEQFK+RTIKRVY+SLT GVP P+SGRVDVPVGRD+NNR+RM A  G     + RH
Sbjct: 267 HMKLSEQFKQRTIKRVYVSLTAGVPRPISGRVDVPVGRDLNNRLRMTAVAGPVNSRKARH 326

Query: 530 AASRYKVIEILAGGGCALVEWRLETGRTHQIRAHAKYLGIPLLGDDVYGGTKSMCLSLLQ 351
           AASRYKVIEILAGG C+LVEW+LETGRTHQIRAHAKYLG+PLLGD+VYGGTKSM LSLL+
Sbjct: 327 AASRYKVIEILAGGSCSLVEWKLETGRTHQIRAHAKYLGVPLLGDEVYGGTKSMVLSLLR 386

Query: 350 SKNPSSYNSQFLELVAGLERPCLHALTLGFNHPKTGENLSFSQLPPSDFADILLRLRSIG 171
            ++P S + + +++V+ L+RPCLHALTLGF HP TGE + FS  PP DF +IL +LR IG
Sbjct: 387 PRSPISLHGKIVQMVSSLDRPCLHALTLGFQHPHTGEQVHFSCEPPVDFDEILSQLRRIG 446

Query: 170 AQKVT 156
           ++ V+
Sbjct: 447 SESVS 451


>ref|XP_003523282.1| PREDICTED: RNA pseudouridine synthase 2, chloroplastic-like isoform
           X1 [Glycine max] gi|571448797|ref|XP_006577958.1|
           PREDICTED: RNA pseudouridine synthase 2,
           chloroplastic-like isoform X2 [Glycine max]
          Length = 450

 Score =  311 bits (797), Expect = 2e-82
 Identities = 155/246 (63%), Positives = 195/246 (79%), Gaps = 1/246 (0%)
 Frame = -3

Query: 890 DSLPETDDDSGDEISALSLDQGHDG-DIGFGLSEASVRPGIVHRLDKGTSGLLVVAKDEQ 714
           ++L +T+D   +  S +SL    +G +    ++  S+RPGIVHRLDKGTSGLLVVAKDE 
Sbjct: 198 EALSDTEDSDDEFNSYISLASSCEGLNSRLSVASNSIRPGIVHRLDKGTSGLLVVAKDEH 257

Query: 713 SHSHLSEQFKKRTIKRVYISLTCGVPGPLSGRVDVPVGRDVNNRIRMIATPGSSTHGRFR 534
           SH  LSEQFK+RTIKR+Y+SLT GVP P++GRV+VPVGRD NNRIRM A  G     + R
Sbjct: 258 SHMKLSEQFKQRTIKRLYVSLTAGVPTPVAGRVEVPVGRDTNNRIRMTAVTGPVNSKKAR 317

Query: 533 HAASRYKVIEILAGGGCALVEWRLETGRTHQIRAHAKYLGIPLLGDDVYGGTKSMCLSLL 354
           +AASRYKVIEILAGG C+LVEW+LETGRTHQIRAHAKYLG+PLLGD++YGGTKSM LSLL
Sbjct: 318 YAASRYKVIEILAGGSCSLVEWKLETGRTHQIRAHAKYLGVPLLGDELYGGTKSMVLSLL 377

Query: 353 QSKNPSSYNSQFLELVAGLERPCLHALTLGFNHPKTGENLSFSQLPPSDFADILLRLRSI 174
           + + P S +S+ +++V+ L+RPCLHA TLGF HP TGE + FS  PP+DFA+IL +LR I
Sbjct: 378 RPRTPISLHSKIVKMVSRLDRPCLHAWTLGFQHPHTGEQVHFSCEPPADFAEILSQLRRI 437

Query: 173 GAQKVT 156
           G++ V+
Sbjct: 438 GSETVS 443


>ref|XP_002301949.1| pseudouridine synthase family protein [Populus trichocarpa]
           gi|222843675|gb|EEE81222.1| pseudouridine synthase
           family protein [Populus trichocarpa]
          Length = 444

 Score =  308 bits (790), Expect = 1e-81
 Identities = 158/238 (66%), Positives = 186/238 (78%), Gaps = 2/238 (0%)
 Frame = -3

Query: 863 SGDEISALSLDQGHDGDIGFGLSE--ASVRPGIVHRLDKGTSGLLVVAKDEQSHSHLSEQ 690
           S  E+ + + D   D D G   S   ASVRPGIVHRLDKGTSGLLVVAKDE SH+HLSEQ
Sbjct: 205 SSQEVLSGAEDVSDDDDEGLCSSSYAASVRPGIVHRLDKGTSGLLVVAKDEHSHAHLSEQ 264

Query: 689 FKKRTIKRVYISLTCGVPGPLSGRVDVPVGRDVNNRIRMIATPGSSTHGRFRHAASRYKV 510
           FK  TIKRVY+SLTCGVP P++GR+DVP+GRDV+NRIRM A       G+ RHAASRYKV
Sbjct: 265 FKLHTIKRVYVSLTCGVPAPMAGRIDVPIGRDVSNRIRMAAIV-EPNRGQARHAASRYKV 323

Query: 509 IEILAGGGCALVEWRLETGRTHQIRAHAKYLGIPLLGDDVYGGTKSMCLSLLQSKNPSSY 330
           IEILAGGG ALVEWRLETGRTHQIRAHAKY+GIPLLGD+VYGGT++M LSLL+S+   S 
Sbjct: 324 IEILAGGGSALVEWRLETGRTHQIRAHAKYIGIPLLGDEVYGGTQNMALSLLRSRTQPSC 383

Query: 329 NSQFLELVAGLERPCLHALTLGFNHPKTGENLSFSQLPPSDFADILLRLRSIGAQKVT 156
           + Q    ++GLERPCLHAL LGF HP TG+ + FS  PP DF +IL +LR +G +K++
Sbjct: 384 HRQLSLSLSGLERPCLHALALGFTHPCTGKEIHFSCPPPPDFTEILSQLREMGTEKLS 441


>ref|XP_004500918.1| PREDICTED: RNA pseudourine synthase 2, chloroplastic-like [Cicer
           arietinum]
          Length = 438

 Score =  308 bits (789), Expect = 2e-81
 Identities = 157/242 (64%), Positives = 188/242 (77%)
 Frame = -3

Query: 890 DSLPETDDDSGDEISALSLDQGHDGDIGFGLSEASVRPGIVHRLDKGTSGLLVVAKDEQS 711
           ++L +T+D S DE++  +        +   LS AS+RPGIVHRLDKGTSGLLVVAKDE S
Sbjct: 198 EALSDTED-SDDELNGFTSQAPSCEGLDSRLSIASIRPGIVHRLDKGTSGLLVVAKDEHS 256

Query: 710 HSHLSEQFKKRTIKRVYISLTCGVPGPLSGRVDVPVGRDVNNRIRMIATPGSSTHGRFRH 531
           H  LSEQFK RTIKRVYISLT GVP P++GRV+VPVGRD NNR+RM A  G  T  + RH
Sbjct: 257 HMKLSEQFKLRTIKRVYISLTAGVPTPVAGRVEVPVGRDPNNRLRMTAVAGPLTSMKARH 316

Query: 530 AASRYKVIEILAGGGCALVEWRLETGRTHQIRAHAKYLGIPLLGDDVYGGTKSMCLSLLQ 351
           AASRYKVIEILAGG CALVEW+LETGRTHQIRAHA+YLG+PLLGD+VYGGTK+M LSLL+
Sbjct: 317 AASRYKVIEILAGGSCALVEWKLETGRTHQIRAHARYLGVPLLGDEVYGGTKNMVLSLLR 376

Query: 350 SKNPSSYNSQFLELVAGLERPCLHALTLGFNHPKTGENLSFSQLPPSDFADILLRLRSIG 171
            +   S + +  ++V+ L+RPCLHA+TLGF HP TGE + FS  PP DF +IL +LR IG
Sbjct: 377 PRTTPSLHGEMTKMVSELDRPCLHAMTLGFQHPHTGEQVHFSCEPPVDFNEILSQLRRIG 436

Query: 170 AQ 165
            Q
Sbjct: 437 RQ 438


>ref|XP_006390244.1| hypothetical protein EUTSA_v10018588mg [Eutrema salsugineum]
           gi|557086678|gb|ESQ27530.1| hypothetical protein
           EUTSA_v10018588mg [Eutrema salsugineum]
          Length = 432

 Score =  307 bits (787), Expect = 3e-81
 Identities = 160/238 (67%), Positives = 183/238 (76%)
 Frame = -3

Query: 872 DDDSGDEISALSLDQGHDGDIGFGLSEASVRPGIVHRLDKGTSGLLVVAKDEQSHSHLSE 693
           +DDS +E   LS D+            ASVRPGIVHRLDKGTSGLLVVAKDE SH+HL+E
Sbjct: 199 EDDSDEE--TLSDDEEMTSSSSLA---ASVRPGIVHRLDKGTSGLLVVAKDEHSHAHLAE 253

Query: 692 QFKKRTIKRVYISLTCGVPGPLSGRVDVPVGRDVNNRIRMIATPGSSTHGRFRHAASRYK 513
           QFK  TI+RVYISLT GVP P  GRVD+P+GRD NNRIRM A PGS + G+ RHAASRYK
Sbjct: 254 QFKLHTIERVYISLTSGVPSPSQGRVDIPIGRDPNNRIRMAAIPGSLSRGKARHAASRYK 313

Query: 512 VIEILAGGGCALVEWRLETGRTHQIRAHAKYLGIPLLGDDVYGGTKSMCLSLLQSKNPSS 333
           VIE LAGGG ALVEWRLETGRTHQIRAHAKY+G+PLLGD+VYGGTKS+ LSLLQ +   S
Sbjct: 314 VIETLAGGGSALVEWRLETGRTHQIRAHAKYMGVPLLGDEVYGGTKSVALSLLQRRVSRS 373

Query: 332 YNSQFLELVAGLERPCLHALTLGFNHPKTGENLSFSQLPPSDFADILLRLRSIGAQKV 159
              Q LELV+ ++RPCLHA+ LGF HP TGE + FS  PPSD A+I+  LR  G +KV
Sbjct: 374 DQEQILELVSRMDRPCLHAIVLGFEHPCTGEVVKFSCPPPSDLAEIVGLLRRSGREKV 431


>ref|NP_001058594.1| Os06g0717400 [Oryza sativa Japonica Group]
           gi|75252835|sp|Q5Z8P2.1|PUS2_ORYSJ RecName: Full=RNA
           pseudouridine synthase 2, chloroplastic; AltName:
           Full=RNA pseudouridylate synthase 2; AltName:
           Full=RNA-uridine isomerase 2; Flags: Precursor
           gi|53791796|dbj|BAD53590.1| ribosomal large subunit
           pseudouridine synthase-like [Oryza sativa Japonica
           Group] gi|54291043|dbj|BAD61720.1| ribosomal large
           subunit pseudouridine synthase-like [Oryza sativa
           Japonica Group] gi|113596634|dbj|BAF20508.1|
           Os06g0717400 [Oryza sativa Japonica Group]
           gi|215706335|dbj|BAG93191.1| unnamed protein product
           [Oryza sativa Japonica Group]
           gi|222636236|gb|EEE66368.1| hypothetical protein
           OsJ_22675 [Oryza sativa Japonica Group]
          Length = 445

 Score =  306 bits (785), Expect = 5e-81
 Identities = 151/235 (64%), Positives = 177/235 (75%)
 Frame = -3

Query: 878 ETDDDSGDEISALSLDQGHDGDIGFGLSEASVRPGIVHRLDKGTSGLLVVAKDEQSHSHL 699
           E  D S D+I    +DQ   G++   + EA VRPGIVHRLDKGTSGLLVVAKDE SH+ L
Sbjct: 195 ECPDSSDDDIDVFDIDQFTTGEVSSEVREALVRPGIVHRLDKGTSGLLVVAKDEHSHAQL 254

Query: 698 SEQFKKRTIKRVYISLTCGVPGPLSGRVDVPVGRDVNNRIRMIATPGSSTHGRFRHAASR 519
           +EQFK  TI+RVYISLTCG P P SGR++VP+ RD NNRIRMIATPGS  H   RHAASR
Sbjct: 255 AEQFKLHTIRRVYISLTCGAPNPNSGRIEVPIARDPNNRIRMIATPGSG-HRYARHAASR 313

Query: 518 YKVIEILAGGGCALVEWRLETGRTHQIRAHAKYLGIPLLGDDVYGGTKSMCLSLLQSKNP 339
           YKV E+ AGGG ALVEWRLETGRTHQIRAHAKYLGIPLLGD+ YGGTKSM LSLL+ + P
Sbjct: 314 YKVREVFAGGGSALVEWRLETGRTHQIRAHAKYLGIPLLGDETYGGTKSMALSLLRPRTP 373

Query: 338 SSYNSQFLELVAGLERPCLHALTLGFNHPKTGENLSFSQLPPSDFADILLRLRSI 174
           S Y+     +++ ++RPCLHA  LGF HP +G+ L FS  PP DF ++L  L  +
Sbjct: 374 SRYHCDLSNMISKIDRPCLHAALLGFKHPHSGKILEFSCPPPDDFTEVLNELHQV 428


>gb|EEC81320.1| hypothetical protein OsI_24484 [Oryza sativa Indica Group]
          Length = 445

 Score =  306 bits (785), Expect = 5e-81
 Identities = 151/235 (64%), Positives = 177/235 (75%)
 Frame = -3

Query: 878 ETDDDSGDEISALSLDQGHDGDIGFGLSEASVRPGIVHRLDKGTSGLLVVAKDEQSHSHL 699
           E  D S D+I    +DQ   G++   + EA VRPGIVHRLDKGTSGLLVVAKDE SH+ L
Sbjct: 195 ECPDSSDDDIDVFDIDQFTTGEVSSEVREALVRPGIVHRLDKGTSGLLVVAKDEHSHAQL 254

Query: 698 SEQFKKRTIKRVYISLTCGVPGPLSGRVDVPVGRDVNNRIRMIATPGSSTHGRFRHAASR 519
           +EQFK  TI+RVYISLTCG P P SGR++VP+ RD NNRIRMIATPGS  H   RHAASR
Sbjct: 255 AEQFKLHTIRRVYISLTCGAPNPNSGRIEVPIARDPNNRIRMIATPGSG-HRYARHAASR 313

Query: 518 YKVIEILAGGGCALVEWRLETGRTHQIRAHAKYLGIPLLGDDVYGGTKSMCLSLLQSKNP 339
           YKV E+ AGGG ALVEWRLETGRTHQIRAHAKYLGIPLLGD+ YGGTKSM LSLL+ + P
Sbjct: 314 YKVREVFAGGGSALVEWRLETGRTHQIRAHAKYLGIPLLGDETYGGTKSMALSLLRPRTP 373

Query: 338 SSYNSQFLELVAGLERPCLHALTLGFNHPKTGENLSFSQLPPSDFADILLRLRSI 174
           S Y+     +++ ++RPCLHA  LGF HP +G+ L FS  PP DF ++L  L  +
Sbjct: 374 SRYHCDLSNMISKIDRPCLHAALLGFKHPHSGKILEFSCPPPDDFTEVLNELHQV 428


>ref|XP_006656497.1| PREDICTED: RNA pseudouridine synthase 2, chloroplastic-like [Oryza
           brachyantha]
          Length = 442

 Score =  305 bits (781), Expect = 2e-80
 Identities = 152/235 (64%), Positives = 177/235 (75%)
 Frame = -3

Query: 878 ETDDDSGDEISALSLDQGHDGDIGFGLSEASVRPGIVHRLDKGTSGLLVVAKDEQSHSHL 699
           E  D S D+I    +DQ   G++   + EA VRPGIVHRLDKGTSGLLVVAKDE SH+ L
Sbjct: 193 ECPDSSDDDIDVFHVDQFTTGEVSSEVREALVRPGIVHRLDKGTSGLLVVAKDEHSHAQL 252

Query: 698 SEQFKKRTIKRVYISLTCGVPGPLSGRVDVPVGRDVNNRIRMIATPGSSTHGRFRHAASR 519
           +EQFK  TI+RVYISLTCG P P SGR++VP+ RD NNRIRMIATPGS  H   RHAASR
Sbjct: 253 AEQFKLHTIRRVYISLTCGAPNPNSGRIEVPIARDPNNRIRMIATPGSG-HRYARHAASR 311

Query: 518 YKVIEILAGGGCALVEWRLETGRTHQIRAHAKYLGIPLLGDDVYGGTKSMCLSLLQSKNP 339
           YKV E+ AGGG ALVEW+LETGRTHQIRAHAKYLGIPLLGD+ YGGTKSM LSLL+ +  
Sbjct: 312 YKVREVFAGGGSALVEWKLETGRTHQIRAHAKYLGIPLLGDETYGGTKSMALSLLRPRTS 371

Query: 338 SSYNSQFLELVAGLERPCLHALTLGFNHPKTGENLSFSQLPPSDFADILLRLRSI 174
           S Y+     L+A ++RPCLHA  LGF HP +G+ L FS  PP DF ++L  LR +
Sbjct: 372 SRYHCDLSNLIAKIDRPCLHAALLGFKHPHSGKILEFSCPPPDDFTEVLNELRRV 426


>ref|XP_004143077.1| PREDICTED: RNA pseudourine synthase 2, chloroplastic-like [Cucumis
           sativus]
          Length = 453

 Score =  302 bits (773), Expect = 1e-79
 Identities = 152/245 (62%), Positives = 188/245 (76%), Gaps = 2/245 (0%)
 Frame = -3

Query: 887 SLPETDDDSGDEISALSLDQGHDGDIGF--GLSEASVRPGIVHRLDKGTSGLLVVAKDEQ 714
           SLP     +G+  S   +       IG    +SEA +RPGIVHRLDKGTSGLLVVAKDE 
Sbjct: 183 SLPMVATSTGENESDSDVSDDEFSSIGVFSRVSEAPIRPGIVHRLDKGTSGLLVVAKDEH 242

Query: 713 SHSHLSEQFKKRTIKRVYISLTCGVPGPLSGRVDVPVGRDVNNRIRMIATPGSSTHGRFR 534
           SH+HLS QFK+ +I+RVYISLTCGVP   +GR+++P+ RD NNRIRM A  G+  +   +
Sbjct: 243 SHAHLSAQFKQHSIERVYISLTCGVPPSTAGRIEMPICRDPNNRIRMTAIDGTKNNPHAK 302

Query: 533 HAASRYKVIEILAGGGCALVEWRLETGRTHQIRAHAKYLGIPLLGDDVYGGTKSMCLSLL 354
           +AASRY V+EILA GG +LVEWRLETGRTHQIRAHAKY+GIPLLGD+VYGGTKSM +SLL
Sbjct: 303 YAASRYNVMEILAQGGSSLVEWRLETGRTHQIRAHAKYMGIPLLGDEVYGGTKSMAMSLL 362

Query: 353 QSKNPSSYNSQFLELVAGLERPCLHALTLGFNHPKTGENLSFSQLPPSDFADILLRLRSI 174
           +++  S+ + Q ++LV+ LERPCLHALTLGF HP TG+N+ FS  PP+DF +IL +LR I
Sbjct: 363 RTRASSNCHGQLMQLVSSLERPCLHALTLGFVHPHTGKNIRFSCPPPTDFTEILSQLREI 422

Query: 173 GAQKV 159
           G QKV
Sbjct: 423 GTQKV 427


>ref|XP_006302277.1| hypothetical protein CARUB_v10020321mg [Capsella rubella]
           gi|482570987|gb|EOA35175.1| hypothetical protein
           CARUB_v10020321mg [Capsella rubella]
          Length = 432

 Score =  298 bits (764), Expect = 1e-78
 Identities = 155/243 (63%), Positives = 183/243 (75%)
 Frame = -3

Query: 887 SLPETDDDSGDEISALSLDQGHDGDIGFGLSEASVRPGIVHRLDKGTSGLLVVAKDEQSH 708
           S PE DDDS DE    S   G +       + ASVRPGIVHRLDKGT+GLLVVAKDE SH
Sbjct: 195 SSPE-DDDSDDE----SFSDGEEMTSSSSYA-ASVRPGIVHRLDKGTTGLLVVAKDEHSH 248

Query: 707 SHLSEQFKKRTIKRVYISLTCGVPGPLSGRVDVPVGRDVNNRIRMIATPGSSTHGRFRHA 528
           +HL+EQFK  TI+RVY+SLT GVP P  GR+++P+GRD +NRIRM A PG  + GR RHA
Sbjct: 249 AHLAEQFKLHTIERVYVSLTTGVPSPPQGRIEIPIGRDSSNRIRMAAIPGGLSSGRARHA 308

Query: 527 ASRYKVIEILAGGGCALVEWRLETGRTHQIRAHAKYLGIPLLGDDVYGGTKSMCLSLLQS 348
           ASRYKVIE LAGGG ALVEWRLETGRTHQIRAHAKY+G+PLLGD+VYGGTKSM LSLLQ 
Sbjct: 309 ASRYKVIETLAGGGSALVEWRLETGRTHQIRAHAKYMGVPLLGDEVYGGTKSMALSLLQK 368

Query: 347 KNPSSYNSQFLELVAGLERPCLHALTLGFNHPKTGENLSFSQLPPSDFADILLRLRSIGA 168
           +   S   + +EL++ L+RPCLHA+ LGF HP TG+ + FS  PP D A+I+  LR  G 
Sbjct: 369 RVCRSDQDEIIELISRLDRPCLHAIVLGFTHPCTGKIVKFSCPPPPDLAEIVGLLRRSGR 428

Query: 167 QKV 159
           + V
Sbjct: 429 ENV 431