BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Mentha29_contig00012699
         (4365 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_007210190.1| hypothetical protein PRUPE_ppa017790mg [Prun...  1237   0.0  
ref|XP_007207232.1| hypothetical protein PRUPE_ppa026856mg [Prun...  1230   0.0  
gb|ADP20178.1| gag-pol polyprotein [Silene latifolia]                1201   0.0  
emb|CAN79321.1| hypothetical protein VITISV_018984 [Vitis vinifera]  1200   0.0  
gb|ADP20179.1| gag-pol polyprotein [Silene latifolia]                1184   0.0  
ref|XP_007051412.1| DNA/RNA polymerases superfamily protein [The...  1155   0.0  
ref|XP_007220740.1| hypothetical protein PRUPE_ppa023598mg [Prun...  1155   0.0  
ref|XP_007221295.1| hypothetical protein PRUPE_ppa024499mg, part...  1013   0.0  
ref|XP_007206823.1| hypothetical protein PRUPE_ppa025991mg [Prun...   991   0.0  
ref|XP_007207981.1| hypothetical protein PRUPE_ppa015715mg, part...   979   0.0  
gb|AAK51582.1|AC022352_18 Putative retroelement [Oryza sativa Ja...   973   0.0  
gb|AAM94350.1| gag-pol polyprotein [Zea mays]                         971   0.0  
gb|ABE60891.1| putative polyprotein [Oryza sativa Japonica Group]     964   0.0  
gb|ABI96971.1| putative gag-pol polyprotein [Triticum monococcum...   961   0.0  
gb|AAQ56338.1| putative gag-pol polyprotein [Oryza sativa Japoni...   957   0.0  
gb|AAK94516.1| gag-pol polyprotein [Hordeum vulgare]                  952   0.0  
gb|AAK94517.1| gag-pol polyprotein [Hordeum vulgare]                  952   0.0  
gb|AAK91332.1|AC090441_14 Putative gag-pol polyprotein [Oryza sa...   950   0.0  
gb|AAF79348.1|AC007887_7 F15O4.13 [Arabidopsis thaliana]              948   0.0  
gb|AAQ56388.1| putative gag-pol polyprotein [Oryza sativa Japoni...   948   0.0  

>ref|XP_007210190.1| hypothetical protein PRUPE_ppa017790mg [Prunus persica]
            gi|462405925|gb|EMJ11389.1| hypothetical protein
            PRUPE_ppa017790mg [Prunus persica]
          Length = 1485

 Score = 1237 bits (3200), Expect = 0.0
 Identities = 636/1363 (46%), Positives = 851/1363 (62%), Gaps = 32/1363 (2%)
 Frame = +2

Query: 17   RVEIPTFNGSLKPEELIDWLSQVDEILDFKEVPDDRRVSLVTMRLTGRAQAWWQQLKVSR 196
            + EIP F G+LK E+ +DWL +V+   D  EVP+ + V +V  RL   A  WW QL+  R
Sbjct: 105  KAEIPNFWGNLKIEDFLDWLVEVERFFDIMEVPEHKMVKMVAFRLKATAAVWWDQLQNLR 164

Query: 197  VRHGKPKITSWDKFKKHIRSAFLPYNFDRELYQRFQNLRQGSRSVDDYSNEFYEFLARVD 376
             R GK ++ +W K K  +   FLP ++++ LY+ +    QG+ SV +Y+ EF     R  
Sbjct: 165  QRQGKQRVRTWRKMKSLMMEQFLPTDYEQILYRMYLGCAQGTHSVSEYTEEFMRLAERNH 224

Query: 377  VNDSPTQLVSRYIGGLRLQLQDVLNMFDPLTVAEAHQRASQAEKQAARRTTANLRLXXXX 556
            + ++  Q V+RY  GL++ +Q+ + M +  T+ EA   A +AE     +   N R     
Sbjct: 225  LTETDNQKVARYNNGLKISIQEKIGMQNIWTLQEAINMALKAELLEKEKRQPNFRRNTTE 284

Query: 557  XXXXXXXXXXXXXXXXAQQSAPPRGYSNPS-----------------QGRPGFRG----- 670
                              Q     G + P+                 +G+P  +      
Sbjct: 285  ASDYTAGASSGAGDKGKAQQQSSGGMTKPTTVGQNKNFNEGSSRNYNRGQPRNQSQNLYA 344

Query: 671  ------CFNCGDLSHRQADCPKPPTGSRGLFTDAVESEPLPLFDTPIXXXXXXXXXXXXX 832
                  C+ C    HR   CP+    +     +A E E     +  +             
Sbjct: 345  KPMTDICYRCQKPGHRSNVCPELKQAN--FIEEADEDEE----NDEVGENDYAGAEFAVE 398

Query: 833  SGDVGPMLMLRRTFLSPRALETEWLRNNLFQSTCTIGGKVCTFIIDAGSCENVISEVAVS 1012
             G     L+L+R  L+PR    E  R+++F+S C+I  KVC  I+D GSCEN +S+  V 
Sbjct: 399  EGMEKITLVLQRVLLAPRE---EGQRHSIFRSLCSIKNKVCDVIVDNGSCENFVSKKLVE 455

Query: 1013 KLNLTTESHPKPYRLSWLSQGTDVMVSKRVLVNFSIGPTYQDSIYCDVVPMDACHLLLGR 1192
             L L+TE H  PY L W+ +G  V V++   V  SIG  Y+D + CDV+ MDACH+LLGR
Sbjct: 456  YLQLSTEPHVSPYSLGWVKKGPSVRVAETCRVPLSIGKHYRDEVLCDVIDMDACHILLGR 515

Query: 1193 PWQYDNTVQHDGRCNTYSFMFRGKKIVLVXXXXXXXXXXXXXXXXXXLLSRVPFQTAMEE 1372
            PWQ+D      GR N   F +  +KI +                    L+ +  +  + E
Sbjct: 516  PWQFDVDATFKGRDNVILFSWNNRKIAMTTTQPSKPSVEVKTRSSS-FLTLISNEQELNE 574

Query: 1373 SGLVFVLLAQPLGDSTSXXXXXXXXXXXXXFADVFPESLPSTLPPLRDIQHHIDLVAGAA 1552
            +    V  A+  GD                F ++F E+LP+ LPP+RDIQH IDLV GA+
Sbjct: 575  A----VKEAEGEGDIPQDVQQILSQ-----FQELFSENLPNELPPMRDIQHRIDLVPGAS 625

Query: 1553 LPNRPHYRMSPKEHEELRRQVEELLARGHIRESLSPCAVPALLTPKKDGTWRMCVDSRAI 1732
            L N PHYRMSPKE++ LR Q+EELL +G IRESLSPCAVP LL PKKD TWRMCVDSRAI
Sbjct: 626  LQNLPHYRMSPKENDILREQIEELLRKGFIRESLSPCAVPVLLVPKKDKTWRMCVDSRAI 685

Query: 1733 NKITVRYRFPIPRLDDLLDQLGGACVFSKLDLKSGYHQIRIRTGDEWKTAFKTREGLYEW 1912
            NKITV+YRFPIPRL+D+LD L G+ VFSK+DL+SGYHQIRIR GDEWKTAFK+++GL+EW
Sbjct: 686  NKITVKYRFPIPRLEDMLDVLSGSKVFSKIDLRSGYHQIRIRPGDEWKTAFKSKDGLFEW 745

Query: 1913 LVMPFGLSNAPSTFMRVMNQALRPFIGKFVVVYFDDILIYSTDPILHIQHLREVLLVLRR 2092
            LVMPFGLSN PSTFMR+MNQ LRPFIG FVVVYFDDILIYST    H+ HLR+VL VLR 
Sbjct: 746  LVMPFGLSNTPSTFMRLMNQVLRPFIGSFVVVYFDDILIYSTTKEEHLVHLRQVLDVLRE 805

Query: 2093 DQFYAAPAKCAFLTTSIQFLGYVVSRDGLMVDPAKVDAVSNWPIPSSITEVRSFHGLASF 2272
            ++ +    KC F T  + FLG+VV   G+ VD  K+ A+ +WP P +++EVRSFHGLA+F
Sbjct: 806  NKLFVNLKKCTFCTNKLLFLGFVVGEHGIQVDDEKIKAILDWPAPKTVSEVRSFHGLATF 865

Query: 2273 YRRFIPHFSGIMAPLTDCMKGPKFQWTAEAEVAFLEVKRRLISAPILVLPDFSLPFELHC 2452
            YRRF+ HFS I+AP+T+C+K  +F W  E E +F ++K +L +AP+L LP+F   FE+ C
Sbjct: 866  YRRFVRHFSSIVAPITECLKKGRFSWGEEQERSFADIKEKLCTAPVLALPNFEKVFEVEC 925

Query: 2453 DASHTGVGAVLSQCGRPVAYFSEKLSGAKLRFSTYDVEFYAIVQAIKHWRHYLFQREFIL 2632
            DAS  GVGAVLSQ  RPVA+FSEKLS A+ ++STYD EFYA+V+A+K W HYL Q+EF+L
Sbjct: 926  DASGVGVGAVLSQDKRPVAFFSEKLSDARQKWSTYDQEFYAVVRALKQWEHYLIQKEFVL 985

Query: 2633 YTDHDSLKHLGSQDKISHRHASWISYLQQFTFVIKHKAGVSNRVADALSRRHGLLMELRV 2812
            +TDH +LK++ SQ  I   HA W+++LQ+F+FVIKH +G +NRVADALSRR  LL+ L  
Sbjct: 986  FTDHQALKYINSQKNIDKMHARWVTFLQKFSFVIKHTSGKTNRVADALSRRASLLITLTQ 1045

Query: 2813 HVPGFDSFMDLYVDDPYFSHVLTQIQQGEPTA-FLLEDGFIFRGTQLCIPACSLRLKIIQ 2989
             V GF+   +LY  D  F  + T+    EP A + L +G++F+G QLCIP  SLR K+I+
Sbjct: 1046 EVVGFECLKELYEGDADFGEIWTKCTNQEPMADYFLNEGYLFKGNQLCIPVSSLREKLIR 1105

Query: 2990 ELHN---EGHVGRDRTLQLLAASYFWPSMRREVGKFVERCRVCQLAKGAATNAGLYMPLP 3160
            +LH     GH+GRD+T+  +   ++WP ++R+VG  V +C  CQ +KG   N GLYMPLP
Sbjct: 1106 DLHGGGLSGHLGRDKTIAGMEERFYWPQLKRDVGTIVRKCYTCQTSKGQVQNTGLYMPLP 1165

Query: 3161 IPTQPWSDVSMDFVLGLPRTQRGNDSLYVVVDRFSKMVHFIPCKKTSDAVSVAQLYFRDV 3340
            +P   W D++MDFVLGLPRTQRG DS++VVVDRFSKM HFI C+KT+DA ++A+L+FR+V
Sbjct: 1166 VPNDIWQDLAMDFVLGLPRTQRGVDSVFVVVDRFSKMAHFIACRKTADASNIAKLFFREV 1225

Query: 3341 YRLHGLPASIVSDRDTRFVSHFWRSLWRTVNTQLNFSSAYHPQTDGQTEVVNRSLGNLLR 3520
             RLHG+P SI SDRDT+F+SHFW +LWR   T LN SS  HPQTDGQTEV NR+LGN++R
Sbjct: 1226 VRLHGVPTSITSDRDTKFLSHFWITLWRLFGTTLNRSSTAHPQTDGQTEVTNRTLGNMVR 1285

Query: 3521 CLVGDHPKAWDLKLPQAEFAHNHAVNRSTGFSPFYVVYGLAPRGPLDLLALPSKVRPHAT 3700
             + G+ PK WD  LPQ EFA+N AV+ +TG SPF +VY   P   +DL+ LP   +    
Sbjct: 1286 SVCGEKPKQWDYALPQVEFAYNSAVHSATGKSPFSIVYTAMPNHVVDLVKLPRGQQTSVA 1345

Query: 3701 ADDFIGHLQQVHQQTHSQLVTTTEKYKADADRKRRAVDFEVGDFVWAILTKDRFPAREYS 3880
            A +    +  V  +   +L  T  KYKA AD+ RR   F+ GD V   L K+RFP   YS
Sbjct: 1346 AKNLAEEVVAVRDEVKQKLEQTNAKYKAAADKHRRVKVFQEGDSVMIFLRKERFPVGTYS 1405

Query: 3881 KLASKKIGPVEIVEKINSNAYRLLLPSHIHTSDVFNVKHLVPF 4009
            KL  KK GP +++++IN NAY + LP  +  S++FNV  L  F
Sbjct: 1406 KLKPKKYGPYKVLKRINDNAYVIELPDSMGISNIFNVADLYEF 1448


>ref|XP_007207232.1| hypothetical protein PRUPE_ppa026856mg [Prunus persica]
            gi|462402874|gb|EMJ08431.1| hypothetical protein
            PRUPE_ppa026856mg [Prunus persica]
          Length = 1493

 Score = 1230 bits (3183), Expect = 0.0
 Identities = 633/1363 (46%), Positives = 843/1363 (61%), Gaps = 32/1363 (2%)
 Frame = +2

Query: 17   RVEIPTFNGSLKPEELIDWLSQVDEILDFKEVPDDRRVSLVTMRLTGRAQAWWQQLKVSR 196
            + EIP F G+LK E+ +DWL +V+   D  EVP+ + V +V  RL   A  WW QL+  R
Sbjct: 116  KAEIPNFWGNLKIEDFLDWLVEVERFFDIMEVPEHKMVKMVAFRLKATAAVWWDQLQNLR 175

Query: 197  VRHGKPKITSWDKFKKHIRSAFLPYNFDRELYQRFQNLRQGSRSVDDYSNEFYEFLARVD 376
             R GK ++ +W K K  +   FLP ++++ LY+ +    QG+RSV +Y+ EF     R  
Sbjct: 176  QRQGKQRVRTWRKMKSLMMERFLPTDYEQILYRMYLGCAQGTRSVSEYTEEFMRLAERNH 235

Query: 377  VNDSPTQLVSRYIGGLRLQLQDVLNMFDPLTVAEAHQRASQAEKQAARRTTANLRLXXXX 556
            + ++  Q V+RY  GL+  +Q+ + M +  T+ EA   A +AE     +   N R     
Sbjct: 236  LTETDNQKVARYNNGLKSSIQEKIGMQNIWTLQEAINMALKAELLEKEKRQPNFRRNKTE 295

Query: 557  XXXXXXXXXXXXXXXXAQQSAPPRGYSNPS-----------------QGRPGFRG----- 670
                              Q     G + P+                 +G+P  +      
Sbjct: 296  ASDYTAGASSGAGDKEKAQQQNSGGMTKPATVGQNKNFNEGSSRNYNRGQPRNQSQNPYA 355

Query: 671  ------CFNCGDLSHRQADCPKPPTGSRGLFTDAVESEPLPLFDTPIXXXXXXXXXXXXX 832
                  C+ C    HR   CP+    +     +A E E        +             
Sbjct: 356  KPMTDICYRCQKPGHRSNVCPERKQAN--FIEEADEDEE----KDEVGENDYAGAEFAVE 409

Query: 833  SGDVGPMLMLRRTFLSPRALETEWLRNNLFQSTCTIGGKVCTFIIDAGSCENVISEVAVS 1012
             G     L+L+R  L+P+    E  R+N+F+S C+I  KVC  I+D GSCEN +S+  V 
Sbjct: 410  EGIEKITLVLQRVLLAPKE---EGQRHNIFRSLCSIKNKVCDVIVDNGSCENFVSKKLVE 466

Query: 1013 KLNLTTESHPKPYRLSWLSQGTDVMVSKRVLVNFSIGPTYQDSIYCDVVPMDACHLLLGR 1192
             L L+TE H  PY L W+ +G  V V++   V  SIG  Y+D + CDV+ MDACH+LLGR
Sbjct: 467  YLQLSTEPHVSPYSLGWVKKGPSVRVAETCRVPLSIGKHYRDDVLCDVIDMDACHILLGR 526

Query: 1193 PWQYDNTVQHDGRCNTYSFMFRGKKIVLVXXXXXXXXXXXXXXXXXXLLSRVPFQTAMEE 1372
            PWQ+D      GR N   F +  +KI +                   + +      A++E
Sbjct: 527  PWQFDVDATFKGRDNVILFSWNNRKIAMATTQPSRKQELRSSSFLTLISNEQELNEAVKE 586

Query: 1373 SGLVFVLLAQPLGDSTSXXXXXXXXXXXXXFADVFPESLPSTLPPLRDIQHHIDLVAGAA 1552
                    A+  GD                F ++  E+LP+ LPP+RDIQH IDLV GA+
Sbjct: 587  --------AEGEGDIPQDVQQILSQ-----FQELLSENLPNELPPMRDIQHRIDLVHGAS 633

Query: 1553 LPNRPHYRMSPKEHEELRRQVEELLARGHIRESLSPCAVPALLTPKKDGTWRMCVDSRAI 1732
            LPN PHYRMSPKE++ LR Q+EELL +G IRESLSPCAVP LL PKKD TWRMCVDSRA+
Sbjct: 634  LPNLPHYRMSPKENDILREQIEELLRKGFIRESLSPCAVPVLLVPKKDKTWRMCVDSRAV 693

Query: 1733 NKITVRYRFPIPRLDDLLDQLGGACVFSKLDLKSGYHQIRIRTGDEWKTAFKTREGLYEW 1912
            NKI V+YRF IPRL+D+LD L G+ VFSK+DL+SGYHQIRIR GDEWKTAFK+++GL+EW
Sbjct: 694  NKIKVKYRFSIPRLEDILDVLSGSKVFSKIDLRSGYHQIRIRPGDEWKTAFKSKDGLFEW 753

Query: 1913 LVMPFGLSNAPSTFMRVMNQALRPFIGKFVVVYFDDILIYSTDPILHIQHLREVLLVLRR 2092
            LVMPFGLSNAPSTFMR+MNQ LRPFIG FVVVYFDDILIYST    H+ HLR+VL VLR 
Sbjct: 754  LVMPFGLSNAPSTFMRLMNQVLRPFIGSFVVVYFDDILIYSTTKEEHLVHLRQVLDVLRE 813

Query: 2093 DQFYAAPAKCAFLTTSIQFLGYVVSRDGLMVDPAKVDAVSNWPIPSSITEVRSFHGLASF 2272
            ++ Y    KC F T  + FLG+VV  +G+ VD  K+ A+ +WP P +++EVRSFHGLA+F
Sbjct: 814  NKLYVNLKKCTFCTNKLLFLGFVVGENGIQVDDEKIKAILDWPAPKTVSEVRSFHGLATF 873

Query: 2273 YRRFIPHFSGIMAPLTDCMKGPKFQWTAEAEVAFLEVKRRLISAPILVLPDFSLPFELHC 2452
            Y RF+ HFS I AP+T+C+K  +F W  E E +F ++K +L +AP+L LP+F   FE+ C
Sbjct: 874  YMRFVRHFSSIAAPITECLKKGRFSWGEEQERSFADIKEKLCTAPVLALPNFEKVFEVEC 933

Query: 2453 DASHTGVGAVLSQCGRPVAYFSEKLSGAKLRFSTYDVEFYAIVQAIKHWRHYLFQREFIL 2632
            DAS  GVGAVL Q  RPVA+FSEKLS A+ ++STYD EFYA+V+A+K W HYL Q+EF+L
Sbjct: 934  DASGVGVGAVLLQDKRPVAFFSEKLSDARQKWSTYDQEFYAVVRALKQWEHYLIQKEFVL 993

Query: 2633 YTDHDSLKHLGSQDKISHRHASWISYLQQFTFVIKHKAGVSNRVADALSRRHGLLMELRV 2812
            +TDH +LK++ SQ  I   HA W+++LQ+F+FVIKH +G +NRVADALSRR  LL+ L  
Sbjct: 994  FTDHQALKYINSQKNIDKMHARWVTFLQKFSFVIKHTSGKTNRVADALSRRASLLITLTQ 1053

Query: 2813 HVPGFDSFMDLYVDDPYFSHVLTQIQQGEP-TAFLLEDGFIFRGTQLCIPACSLRLKIIQ 2989
             V GF+   +LY  D  F  + T+    EP T + L +G++F+G QLCIP  SLR K+I+
Sbjct: 1054 EVVGFECLKELYEGDDDFREIWTKCTNQEPMTDYFLTEGYLFKGNQLCIPVSSLREKLIR 1113

Query: 2990 ELHN---EGHVGRDRTLQLLAASYFWPSMRREVGKFVERCRVCQLAKGAATNAGLYMPLP 3160
            +LH     GH+GRD+T+  +   ++WP ++R+VG  V +C  CQ +KG   N GLYMPLP
Sbjct: 1114 DLHGGGLSGHLGRDKTIAGMEERFYWPQLKRDVGTIVRKCYTCQTSKGQVQNTGLYMPLP 1173

Query: 3161 IPTQPWSDVSMDFVLGLPRTQRGNDSLYVVVDRFSKMVHFIPCKKTSDAVSVAQLYFRDV 3340
            +P   W D++MDFVLG PRTQR  DS++VV DRFSKM HFI CKKT+DA ++A+L+FR+V
Sbjct: 1174 VPNDIWQDLAMDFVLGFPRTQRRVDSVFVVADRFSKMAHFIACKKTADASNIAKLFFREV 1233

Query: 3341 YRLHGLPASIVSDRDTRFVSHFWRSLWRTVNTQLNFSSAYHPQTDGQTEVVNRSLGNLLR 3520
             RLHG+P SI SDRDT+F+SHFW +LWR   T LN SS  HPQTDGQTEV NR+LGN++R
Sbjct: 1234 VRLHGVPTSITSDRDTKFLSHFWITLWRLFGTTLNRSSTAHPQTDGQTEVTNRTLGNMVR 1293

Query: 3521 CLVGDHPKAWDLKLPQAEFAHNHAVNRSTGFSPFYVVYGLAPRGPLDLLALPSKVRPHAT 3700
             + G+ PK WD  LPQ EFA+N AV+ +TG SPF +VY   P   +DL+ LP   +    
Sbjct: 1294 SVCGEKPKQWDYALPQMEFAYNSAVHSATGKSPFSIVYTATPNHVVDLVKLPRGQQTSVA 1353

Query: 3701 ADDFIGHLQQVHQQTHSQLVTTTEKYKADADRKRRAVDFEVGDFVWAILTKDRFPAREYS 3880
            A +    +  V  +   +L  T  KYKA ADR RR   F+ GD V   L K+RFPA  YS
Sbjct: 1354 AKNLAEEVVAVRDEVKQKLEQTNAKYKAAADRHRRVKVFQEGDSVMVFLRKERFPAGTYS 1413

Query: 3881 KLASKKIGPVEIVEKINSNAYRLLLPSHIHTSDVFNVKHLVPF 4009
            KL  KK GP +++++IN NAY + LP  +  S++FNV  L  F
Sbjct: 1414 KLKPKKYGPYKVLKRINDNAYDIELPDSMGISNIFNVADLYEF 1456


>gb|ADP20178.1| gag-pol polyprotein [Silene latifolia]
          Length = 1518

 Score = 1201 bits (3108), Expect = 0.0
 Identities = 608/1365 (44%), Positives = 858/1365 (62%), Gaps = 30/1365 (2%)
 Frame = +2

Query: 5    EQGFRVEIPTFNGSLKPEELIDWLSQVDEILDFKEVPDDRRVSLVTMRLTGRAQAWWQQL 184
            ++  +VEIP F+GSL P++L++W+  V++I ++K   D +   +  ++L G A  W+  L
Sbjct: 87   DRHIKVEIPEFSGSLNPDDLLEWIRDVEKIFEYKNYNDVKACKVAVLKLKGYASLWYDNL 146

Query: 185  KVSRVRHGKPKITSWDKFKKHIRSAFLPYNFDRELYQRFQNLRQGSRSVDDYSNEFYEFL 364
            K  R++ GK  + SW K KK + + F+  ++ ++L+ +  NL+Q  ++V+ Y  EF +  
Sbjct: 147  KHQRLKEGKDPLRSWSKLKKKMLAKFVTKDYTQDLFIKLSNLKQKEKTVEAYLREFEQLT 206

Query: 365  ARVDVNDSPTQLVSRYIGGL------RLQLQDVLNMFDPLTVAEAHQRASQAEKQAAR-- 520
             + ++N+   Q ++R++ GL       +++Q + +  D + ++   ++  + +  A R  
Sbjct: 207  LQCEINEKSEQRIARFLEGLDKNIAAEVRMQPLWSYDDVVNLSLRVEKMGKTKPVATRPK 266

Query: 521  ---RTTANLRLXXXXXXXXXXXXXXXXXXXXAQQSAPPRGYSNPSQGRPGFRGCFNCGDL 691
               R  +++++                     +  AP     NP   R   + CF C   
Sbjct: 267  PVFRPYSSVKINDPPKTTPQSTVD--------KGKAPMNPKINPPLSRDKIK-CFQCQGF 317

Query: 692  SHRQADCPKPPT--------GSRGLFTDAVESEPLPLFDTPIXXXXXXXXXXXXXSGDVG 847
             H + DCP   T          R    +  E E L L +  +               D G
Sbjct: 318  GHFRKDCPSARTLTAIEVAEWEREGLVEYEEDEALVLEE--VESEKETSPDQIVAHPDTG 375

Query: 848  PMLMLRRTFLSPRALETEWLRNNLFQSTCTIGGKVCTFIIDAGSCENVISEVAVSKLNLT 1027
              L L R   S +A      R+ +F+S CT+ G+VC  II+ GSC NV S   VSKL L 
Sbjct: 376  HSLFLWRVMHSQQAPLEADQRSMIFRSRCTVQGRVCNLIINGGSCTNVASTTMVSKLGLP 435

Query: 1028 TESHPKPYRLSWLSQGTDVMVSKRVLVNFSIGPTYQDSIYCD-VVPMDACHLLLGRPWQY 1204
            T+ HP PY+L WLS+ + V V K+ +++FSIG  Y+D + CD VVPMDACHLLLGRPW+Y
Sbjct: 436  TQEHPNPYKLRWLSKDSGVRVDKQCIISFSIGKMYKDEVLCDVVVPMDACHLLLGRPWEY 495

Query: 1205 DNTVQHDGRCNTYSFMFRGKKIVLV----XXXXXXXXXXXXXXXXXXLLSRVPFQTAMEE 1372
            D    H G+ N Y F  +GKK+ L                        LS       + +
Sbjct: 496  DRNTTHQGKDNVYIFKHQGKKVTLTPLPPNQRDYGSPNVPEEMSGVLFLSEAAMIKEIRQ 555

Query: 1373 SGLVFVLLAQPLGDSTSXXXXXXXXXXXXXFADVFPESLPSTLPPLRDIQHHIDLVAGAA 1552
            +  V +LL++ +    +             F +VFP+ LPS LPPLR I+HHIDLV G+ 
Sbjct: 556  AQPVLMLLSREVNQEENTVVPTAVAPLIQRFQEVFPDELPSGLPPLRGIEHHIDLVPGSV 615

Query: 1553 LPNRPHYRMSPKEHEELRRQVEELLARGHIRESLSPCAVPALLTPKKDGTWRMCVDSRAI 1732
            LPN+P YR  P   +EL+ Q+EEL+A+G +RESLSPCAVPALL PKKDGTWRMC DSRAI
Sbjct: 616  LPNKPAYRCDPNATKELQHQIEELMAKGFVRESLSPCAVPALLVPKKDGTWRMCTDSRAI 675

Query: 1733 NKITVRYRFPIPRLDDLLDQLGGACVFSKLDLKSGYHQIRIRTGDEWKTAFKTREGLYEW 1912
            N ITV+YRFPIPRLDD+LD+L GA +FSK+DL+ GYHQ+RIR GDEWKTAFKT+ GLYEW
Sbjct: 676  NNITVKYRFPIPRLDDMLDELSGASIFSKIDLRQGYHQVRIREGDEWKTAFKTKHGLYEW 735

Query: 1913 LVMPFGLSNAPSTFMRVMNQALRPFIGKFVVVYFDDILIYSTDPILHIQHLREVLLVLRR 2092
            LVMPFGLSNAPSTFMR+M + LRP +GKF VVYFDDIL+YS     H++HL  V  +LR 
Sbjct: 736  LVMPFGLSNAPSTFMRLMTEVLRPCLGKFAVVYFDDILVYSKTKGEHLKHLEVVFKILRE 795

Query: 2093 DQFYAAPAKCAFLTTSIQFLGYVVSRDGLMVDPAKVDAVSNWPIPSSITEVRSFHGLASF 2272
             + Y    KC F+   + FLGY++S  G+ VD   + A+ +WP P+++TEVRSFHGLASF
Sbjct: 796  QKLYGKLEKCTFMVEEVAFLGYLISGRGISVDQENIAAMQSWPTPTTVTEVRSFHGLASF 855

Query: 2273 YRRFIPHFSGIMAPLTDCMKGPKFQWTAEAEVAFLEVKRRLISAPILVLPDFSLPFELHC 2452
            YRRFI +FS ++AP+T+CM+  +FQWT +A+ +F ++K+ + + PIL LPDF   FE+ C
Sbjct: 856  YRRFIKNFSTVVAPITECMRKGEFQWTEQAQQSFEKIKQLMCNTPILKLPDFDQLFEVEC 915

Query: 2453 DASHTGVGAVLSQCGRPVAYFSEKLSGAKLRFSTYDVEFYAIVQAIKHWRHYLFQREFIL 2632
            DAS  G+GAVL Q  +PVAYFSEKL+GAKL++STYD EFYAI++A+ HW HYL  + F+L
Sbjct: 916  DASGVGIGAVLIQSQKPVAYFSEKLNGAKLKYSTYDKEFYAIIRALMHWNHYLKPKPFVL 975

Query: 2633 YTDHDSLKHLGSQDKISHRHASWISYLQQFTFVIKHKAGVSNRVADALSRRHGLLMELRV 2812
            ++DH++LK++  Q K++ RHA W+ +LQ FTF  K+K G  N VADALSRRH LL  +  
Sbjct: 976  HSDHEALKYINGQHKLNFRHAKWVEFLQSFTFSSKYKEGKKNVVADALSRRHSLLSVMSN 1035

Query: 2813 HVPGFDSFMDLYVDDPYFSH---VLTQIQQGEPTAFLLEDGFIFRGTQLCIPACSLRLKI 2983
             V GF+   +LY +DP FS      T+  + + + +LL++GF+F+G +LC+P  S R  +
Sbjct: 1036 RVLGFEFMKELYKEDPDFSEEWITQTEGHKNQGSKYLLQEGFLFQGNKLCVPRGSYRDLL 1095

Query: 2984 IQELHN---EGHVGRDRTLQLLAASYFWPSMRREVGKFVERCRVCQLAKGAATNAGLYMP 3154
            I+E+H+    GH G  +TL++L   ++WP M  +V   + RC  CQL+K ++   G Y P
Sbjct: 1096 IREVHSGGMGGHFGVQKTLEILQDQFYWPRMMGDVQIILRRCSKCQLSK-SSFQPGPYTP 1154

Query: 3155 LPIPTQPWSDVSMDFVLGLPRTQRGNDSLYVVVDRFSKMVHFIPCKKTSDAVSVAQLYFR 3334
            LP+P++PW D+SMDF++ LPRTQRG DS+ VVVDRFSKM HF+ CKKT DAVSVA+L+ +
Sbjct: 1155 LPVPSKPWEDLSMDFIVALPRTQRGKDSVMVVVDRFSKMAHFVACKKTEDAVSVAELFLK 1214

Query: 3335 DVYRLHGLPASIVSDRDTRFVSHFWRSLWRTVNTQLNFSSAYHPQTDGQTEVVNRSLGNL 3514
            ++ RLHG+P +IVSDRDT+F+ +FW++LW+ + T+L FS+++HPQTDGQTEV NR+LG +
Sbjct: 1215 EIVRLHGVPKTIVSDRDTKFMGYFWKTLWKLLKTKLLFSTSHHPQTDGQTEVTNRTLGRI 1274

Query: 3515 LRCLVGDHPKAWDLKLPQAEFAHNHAVNRSTGFSPFYVVYGLAPRGPLDLLALPSKVRPH 3694
            LRCLV    K WDLKL  AEFA N A + +TG SPF VVYG+ P  PLDL ++P K   +
Sbjct: 1275 LRCLVSKSLKDWDLKLAAAEFAFNRAPSTATGHSPFEVVYGVNPLMPLDLSSVP-KENIN 1333

Query: 3695 ATADDFIGHLQQVHQQTHSQLVTTTEKYKADADRKRRAVDFEVGDFVWAILTKDRFPARE 3874
              A      L ++H+    Q+  T E+Y+      +   +FE GD VW  L K+RFPA+ 
Sbjct: 1334 LDAMKRAEQLLKLHETVKRQIERTNEQYQKHLKVPKGKKEFEPGDLVWIHLRKERFPAKR 1393

Query: 3875 YSKLASKKIGPVEIVEKINSNAYRLLLPSHIHTSDVFNVKHLVPF 4009
             +KL  +  GP E+VEKI  +AY++ LP        FNV  L P+
Sbjct: 1394 KNKLMPRSDGPFEVVEKIGPSAYKIDLPGDYGVHGTFNVGDLSPY 1438


>emb|CAN79321.1| hypothetical protein VITISV_018984 [Vitis vinifera]
          Length = 1521

 Score = 1200 bits (3105), Expect = 0.0
 Identities = 615/1364 (45%), Positives = 858/1364 (62%), Gaps = 36/1364 (2%)
 Frame = +2

Query: 17   RVEIPTFNGSLKPEELIDWLSQVDEILDFKEVPDDRRVSLVTMRLTGRAQAWWQQLKVSR 196
            R+E+  F G L P   +DW+  +++  D+  +P++R+V  V  +L G A+ WW  ++   
Sbjct: 89   RLEVAEFYGKLNPTAFLDWIMSMEDYFDWYAMPENRKVRFVKAKLKGAARLWWHNIENQA 148

Query: 197  VRHGKPKITSWDKFKKHIRSAFLPYNFDRELYQRFQNLRQGSRSVDDYSNEFYEFLARVD 376
             R G+P I +WD+ K  ++  FLP ++++ +Y +  +L+QG++SV++Y+ EF+E   R  
Sbjct: 149  HRTGQPPIDTWDEMKLKMKEHFLPTDYEQLMYTKLFSLKQGTKSVEEYTEEFHELSIRNQ 208

Query: 377  VNDSPTQLVSRYIGGLRLQLQDVLNMFDPLTVAEAHQRASQAEKQAARR----------T 526
            V +S  QL +RY  GLR+++Q  +      TV + +Q A + E+    R          +
Sbjct: 209  VXESDAQLAARYKAGLRMEIQLEMIAAHTYTVDDVYQLALKIEEGLKFRVSRHPSSQIGS 268

Query: 527  TANLRLXXXXXXXXXXXXXXXXXXXXAQQSAPPRGYSNPSQGRPGFRG----------CF 676
            T + R                       Q      + N ++G+               CF
Sbjct: 269  TFSNRTTSKPLSTSNFRTSIHVNGGDNTQPTSNVAHQNGNKGKNSMSNGDRKVDATPLCF 328

Query: 677  NCGDLSHRQADCPKPPTGSRGLFTDAVESEPLPLFDTPIXXXXXXXXXXXXXSGDV---- 844
             CG   H    CP     ++GL    VE EP    ++ +               D     
Sbjct: 329  KCGGHGHYAVVCP-----TKGLHF-CVE-EPESELESYLKKEETYNEDEVSEECDYYDGM 381

Query: 845  --GPMLMLRRTFLSPRAL-ETEWLRNNLFQSTCTIGGKVCTFIIDAGSCENVISEVAVSK 1015
              G  L++R     P+   E +W R ++FQ+  +  G++CT IID GS  N+ S+  V K
Sbjct: 382  TEGHSLVVRPLLTIPKVKGEEDWRRISIFQTRISCHGRLCTMIIDGGSSLNIASQELVEK 441

Query: 1016 LNLTTESHPKPYRLSWLSQGTDVMVSKRVLVNFSIGPTYQDSIYCDVVPMDACHLLLGRP 1195
            LNL TE HP P+R++W++  T + VS R LV F  G  +++S++C+V+P+   H+LLGRP
Sbjct: 442  LNLKTERHPNPFRVAWVND-TSIPVSFRCLVTFLFGKDFEESVWCEVLPIKVSHILLGRP 500

Query: 1196 WQYDNTVQHDGRCNTYSFMFRG-KKIVLVXXXXXXXXXXXXXXXXXXLLSRVPFQTAMEE 1372
            W +D  VQHDG  NTY+ +  G KKI+                    +L+   F+   +E
Sbjct: 501  WLFDRKVQHDGYENTYALIHNGRKKILRPMKEVPPIKKSNENAQPKKVLTMCQFENESKE 560

Query: 1373 SGLVFVLLAQPLGD--STSXXXXXXXXXXXXXFADVFPESLPSTLPPLRDIQHHIDLVAG 1546
            + ++F L+A+ + +                  F+D++P  LP+ LPP+RDIQH IDL+ G
Sbjct: 561  TXVIFALMARKVEEFKEQDKEYPANARKILDDFSDLWPVELPNELPPMRDIQHAIDLIPG 620

Query: 1547 AALPNRPHYRMSPKEHEELRRQVEELLARGHIRESLSPCAVPALLTPKKDGTWRMCVDSR 1726
            A+LPN P YRM+P EH EL+RQV+ELL +G IRESLSPC VPALLTPKKDG+WRMCVDSR
Sbjct: 621  ASLPNLPAYRMNPTEHAELKRQVDELLTKGFIRESLSPCGVPALLTPKKDGSWRMCVDSR 680

Query: 1727 AINKITVRYRFPIPRLDDLLDQLGGACVFSKLDLKSGYHQIRIRTGDEWKTAFKTREGLY 1906
            AINKIT++YRFPIPRLDD+LD + G+ +FSK+DL+SGYHQIRIR GDEWKT+FKT++GLY
Sbjct: 681  AINKITIKYRFPIPRLDDMLDMMVGSVIFSKIDLRSGYHQIRIRPGDEWKTSFKTKDGLY 740

Query: 1907 EWLVMPFGLSNAPSTFMRVMNQALRPFIGKFVVVYFDDILIYSTDPILHIQHLREVLLVL 2086
            EWLVMPFGL+NAPSTFMR+M Q L+PFIG+FVVVYFDDILIYS     H +HL++V+  L
Sbjct: 741  EWLVMPFGLTNAPSTFMRIMTQVLKPFIGRFVVVYFDDILIYSRSCEDHEEHLKQVMRTL 800

Query: 2087 RRDQFYAAPAKCAFLTTSIQFLGYVVSRDGLMVDPAKVDAVSNWPIPSSITEVRSFHGLA 2266
            R ++FY    KC F++ S+ FLG+VVS  G+  DP K+ A+ +WP+P++I EVRSFHG+A
Sbjct: 801  RAEKFYINLKKCTFMSPSVVFLGFVVSSKGVETDPEKIKAIVDWPVPTNIHEVRSFHGMA 860

Query: 2267 SFYRRFIPHFSGIMAPLTDCMKGPKFQWTAEAEVAFLEVKRRLISAPILVLPDFSLPFEL 2446
            +FYRRFI +FS IMAP+T+CMK   F WT  A  AF E+K ++++ PIL LPDF   FE+
Sbjct: 861  TFYRRFIRNFSSIMAPITECMKPGLFIWTKAANKAFEEIKSKMVNPPILRLPDFEKVFEV 920

Query: 2447 HCDASHTGVGAVLSQCGRPVAYFSEKLSGAKLRFSTYDVEFYAIVQAIKHWRHYLFQREF 2626
             CDASH G+GAVLSQ G PVA+FSEKL+GAK ++STYD+EFYA+VQAI+HW+HYL  +EF
Sbjct: 921  ACDASHVGIGAVLSQEGHPVAFFSEKLNGAKKKYSTYDLEFYAVVQAIRHWQHYLSYKEF 980

Query: 2627 ILYTDHDSLKHLGSQDKISHRHASWISYLQQFTFVIKHKAGVSNRVADALSRRHGLLMEL 2806
            +LY+DH++L++L SQ K++ RHA W S+LQ FTF +KH AG+ N+VADALSR+  LL+ +
Sbjct: 981  VLYSDHEALRYLNSQKKLNSRHAKWSSFLQLFTFNLKHCAGIENKVADALSRKALLLVNM 1040

Query: 2807 RVHVPGFDSFMDLYVDDPYFSHVLTQIQQGEPTA---FLLEDGFIFRGTQLCIPACSLRL 2977
                 GF+     Y +D  F  V + +  G       F + +G++F   +LC+P  SLR 
Sbjct: 1041 STTTIGFEELKHCYDNDADFGDVYSSLLSGSKATCIDFQILEGYLFYKNRLCLPRTSLRD 1100

Query: 2978 KIIQELHN---EGHVGRDRTLQLLAASYFWPSMRREVGKFVERCRVCQLAKGAATNAGLY 3148
             +I ELH     GH GRD+T+ L+   +FWPS++++V K +++CR CQ+ KG+  N GLY
Sbjct: 1101 HVIWELHGGGMGGHFGRDKTIALVEDRFFWPSLKKDVWKVIKQCRACQVGKGSKQNTGLY 1160

Query: 3149 MPLPIPTQPWSDVSMDFVLGLPRTQRGNDSLYVVVDRFSKMVHFIPCKKTSDAVSVAQLY 3328
             PLP+P++PW D+SMDFVLGLPRTQRG DS++VVVDRFSKM HFIPCKK SDA  VA L+
Sbjct: 1161 TPLPVPSKPWEDLSMDFVLGLPRTQRGFDSIFVVVDRFSKMAHFIPCKKASDASYVAALF 1220

Query: 3329 FRDVYRLHGLPASIVSDRDTRFVSHFWRSLWRTVNTQLNFSSAYHPQTDGQTEVVNRSLG 3508
            F++V RLHGLP SIVSDRD                                 ++ NRSLG
Sbjct: 1221 FKEVVRLHGLPQSIVSDRD---------------------------------KLSNRSLG 1247

Query: 3509 NLLRCLVGDHPKAWDLKLPQAEFAHNHAVNRSTGFSPFYVVYGLAPRGPLDLLALPSKVR 3688
            NLLRC+V D  + WD  LPQAEFA N + NR+TG+SPF V YGL P+ P+DL+ LP+ VR
Sbjct: 1248 NLLRCIVRDQLRKWDNXLPQAEFAFNSSTNRTTGYSPFEVAYGLKPKQPVDLIPLPTSVR 1307

Query: 3689 PHATADDFIGHLQQVHQQTHSQLVTTTEKYKADADRKRRAVDFEVGDFVWAILTKDRFPA 3868
                 D F  H++ +H++   ++  + E YK  AD  RR + F+ GD V   L  +RF  
Sbjct: 1308 TSQDGDAFARHIRDIHEKVREKIKISNENYKEAADAHRRYIQFQEGDLVMVRLRPERFHP 1367

Query: 3869 REYSKLASKKIGPVEIVEKINSNAYRLLLPSHIHTSDVFNVKHL 4000
              Y KL +KK GP  +++++  NAY L LPS++H S +FNV+ L
Sbjct: 1368 STYQKLQAKKAGPFRVLKRLGENAYLLELPSNLHFSPIFNVEDL 1411


>gb|ADP20179.1| gag-pol polyprotein [Silene latifolia]
          Length = 1475

 Score = 1184 bits (3062), Expect = 0.0
 Identities = 595/1344 (44%), Positives = 830/1344 (61%), Gaps = 13/1344 (0%)
 Frame = +2

Query: 17   RVEIPTFNGSLKPEELIDWLSQVDEILDFKEVPDDRRVSLVTMRLTGRAQAWWQQLKVSR 196
            +VEIP F+GSL PE+L+DW   ++ + +FK   D +   +  ++L G A  W++ LK  R
Sbjct: 89   KVEIPDFHGSLNPEDLLDWFRTIERVFEFKGYSDGKAFKVAILKLKGYASLWYENLKNQR 148

Query: 197  VRHGKPKITSWDKFKKHIRSAFLPYNFDRELYQRFQNLRQGSRSVDDYSNEFYEFLARVD 376
             R GK  I SW K KK +   F+P  + ++++ +   L+Q  + ++ Y  +F +   + +
Sbjct: 149  RRDGKEPIKSWLKLKKKLNEKFIPKEYTQDIFIKLTQLKQDQQPLESYLRDFEQLTLQCE 208

Query: 377  VNDSPTQLVSRYIGGLRLQLQDVLNMFDPLTVAEAHQRASQAEKQAARRTTANLRLXXXX 556
            +N+ P Q ++R++ GL  ++   + M    +  EA   A + EK    + T         
Sbjct: 209  LNEKPEQKIARFVEGLDTKIAHRVRMQQVWSFDEAVNLALRVEKMGKGKATTTKPTTKPA 268

Query: 557  XXXXXXXXXXXXXXXXAQQSAPPRGYSNPSQGRPGF--RGCFNCGDLSHRQADCPKPPTG 730
                             + +   +G +  +  +     + C+ C    H   +CP     
Sbjct: 269  TFRPPTSFKINEPPSQNKTTILDKGKAAETSQKKTMPLKKCYQCQGYGHFAKECPTKRAL 328

Query: 731  SRGLFTDAVESEPLPLFDTPIXXXXXXXXXXXXXSGDVGPMLMLRRTF-LSPRALETEWL 907
            S        + E L + D  +               D G  L+  R     P+ LE +  
Sbjct: 329  SSFEVVHWGDDEIL-VCDEEVEGTDHEEDDVVMP--DAGLSLVTWRVMHTQPQPLEMDQ- 384

Query: 908  RNNLFQSTCTIGGKVCTFIIDAGSCENVISEVAVSKLNLTTESHPKPYRLSWLSQGTDVM 1087
            R  +F+S CTI G+VC  IID GSC NV S   + KL+L T+ HP PY+L WL++G +V 
Sbjct: 385  RQQIFRSRCTIKGRVCNLIIDGGSCTNVASSTLIEKLSLPTQDHPSPYKLRWLNKGAEVR 444

Query: 1088 VSKRVLVNFSIGPTYQDSIYCDVVPMDACHLLLGRPWQYDNTVQHDGRCNTYSFMFRGKK 1267
            V K+ LV FSIG  Y D   CDV+PMDACHLLLGRPW++D    H GR NTY+F FR +K
Sbjct: 445  VDKQCLVTFSIGKNYSDEALCDVLPMDACHLLLGRPWEFDRDSVHHGRDNTYTFKFRSRK 504

Query: 1268 IVLVXXXXXXXXXXXXXXXXXX----LLSRVPFQTAMEESGLVFVLLAQPLGDSTSXXXX 1435
            ++L                       L++       ++    V+ L+A+ +    +    
Sbjct: 505  VILTPLPPVLKHTTPPSMLEPSKEVLLINEAEMLQELKGDEDVYALIAKDVVFGQNVSLP 564

Query: 1436 XXXXXXXXXFADVFPESLPSTLPPLRDIQHHIDLVAGAALPNRPHYRMSPKEHEELRRQV 1615
                     + DVFP  LPS LPPLR I+H ID + GA LPN+  YR  PK  +EL++Q+
Sbjct: 565  KEVQELLQSYEDVFPNELPSGLPPLRGIEHQIDFIPGATLPNKAAYRSDPKATQELQQQI 624

Query: 1616 EELLARGHIRESLSPCAVPALLTPKKDGTWRMCVDSRAINKITVRYRFPIPRLDDLLDQL 1795
             EL+++G +RESLSPC+VPALL PKKDG+WRMC DSRAIN IT++YRFPIPRLDD+LD+L
Sbjct: 625  GELVSKGFVRESLSPCSVPALLVPKKDGSWRMCTDSRAINNITIKYRFPIPRLDDILDEL 684

Query: 1796 GGACVFSKLDLKSGYHQIRIRTGDEWKTAFKTREGLYEWLVMPFGLSNAPSTFMRVMNQA 1975
             GA +FSK+DL+ GYHQ+RI+ GDEWKTAFKT+ GLYEWLVMPFGLSNAPSTFMR+M + 
Sbjct: 685  SGAQLFSKIDLRQGYHQVRIKEGDEWKTAFKTKHGLYEWLVMPFGLSNAPSTFMRLMTEV 744

Query: 1976 LRPFIGKFVVVYFDDILIYSTDPILHIQHLREVLLVLRRDQFYAAPAKCAFLTTSIQFLG 2155
            LRP++G+FVVVYFDDIL+YS     H++HL+ +   LR  + Y    KC+F+   +QFLG
Sbjct: 745  LRPYLGRFVVVYFDDILVYSPSKEEHLKHLQVLFETLREHKLYGKLEKCSFMQNEVQFLG 804

Query: 2156 YVVSRDGLMVDPAKVDAVSNWPIPSSITEVRSFHGLASFYRRFIPHFSGIMAPLTDCMKG 2335
            +++S  G++VD  KV A+ +WPIP +IT+VRSFHGLASFYRRFI  FS +MAP+T+CMK 
Sbjct: 805  FIISDRGILVDQEKVKAIKSWPIPKNITDVRSFHGLASFYRRFIKDFSTLMAPITECMKK 864

Query: 2336 PKFQWTAEAEVAFLEVKRRLISAPILVLPDFSLPFELHCDASHTGVGAVLSQCGRPVAYF 2515
             +F+W  +AE +F  +K +L  +PIL LP+F+  FE+ CDAS  G+GAVL Q  +P+AYF
Sbjct: 865  GEFKWGDKAESSFNIIKEKLCESPILTLPNFNKLFEVECDASGIGIGAVLVQEHKPIAYF 924

Query: 2516 SEKLSGAKLRFSTYDVEFYAIVQAIKHWRHYLFQREFILYTDHDSLKHLGSQDKISHRHA 2695
            SEKLSGAKL +STYD EFYAIV+A+ HW HYL  R F+L++DH++LK++  Q K++HRHA
Sbjct: 925  SEKLSGAKLNYSTYDKEFYAIVRALNHWSHYLKPRPFVLHSDHEALKYINGQHKLNHRHA 984

Query: 2696 SWISYLQQFTFVIKHKAGVSNRVADALSRRHGLLMELRVHVPGFDSFMDLYVDDPYFSHV 2875
             W+ +LQ F F  K+  G  N VADALSRR  +L  +   V GF+   +LYV+DP F   
Sbjct: 985  KWVEFLQSFNFSSKYIEGKDNIVADALSRRFIMLSFMEQRVLGFEYMKELYVEDPDFKGE 1044

Query: 2876 LTQIQQGE---PTAFLLEDGFIFRGTQLCIPACSLRLKIIQELHNE---GHVGRDRTLQL 3037
               +Q G+    + +L+++GF+F G +LC+P    R  +I+E+H+    GH G  +T  +
Sbjct: 1045 WELLQSGQIKLKSKYLVQNGFLFFGNKLCVPRGPYRNLLIREVHSNGLAGHFGIQKTYDI 1104

Query: 3038 LAASYFWPSMRREVGKFVERCRVCQLAKGAATNAGLYMPLPIPTQPWSDVSMDFVLGLPR 3217
            L   ++WP M  +V   ++RC  CQ +K +    G Y PLP+P QPW D+SMDF++ LPR
Sbjct: 1105 LQEQFYWPKMLGDVQDVIKRCAPCQQSK-SYFQTGPYTPLPVPNQPWEDISMDFIVALPR 1163

Query: 3218 TQRGNDSLYVVVDRFSKMVHFIPCKKTSDAVSVAQLYFRDVYRLHGLPASIVSDRDTRFV 3397
            TQRG DS+ VVVDRFSKM HFI CKKT DA SVA+LYF++V +LHG+P SIVSDRD++F+
Sbjct: 1164 TQRGKDSIMVVVDRFSKMAHFIACKKTEDATSVAELYFKEVVKLHGIPKSIVSDRDSKFM 1223

Query: 3398 SHFWRSLWRTVNTQLNFSSAYHPQTDGQTEVVNRSLGNLLRCLVGDHPKAWDLKLPQAEF 3577
            SHFWR+LW+ + T+L FS+++HPQTDGQTEV N++LG +LRC V    K WDLKL QAEF
Sbjct: 1224 SHFWRTLWKLLKTRLLFSTSHHPQTDGQTEVTNKTLGRILRCTVARSLKDWDLKLAQAEF 1283

Query: 3578 AHNHAVNRSTGFSPFYVVYGLAPRGPLDLLALPSKVRPHATADDFIGHLQQVHQQTHSQL 3757
            A N A + +TG SPF VVYG+ P  P DL  +      +  A   +  +  +H+Q   Q+
Sbjct: 1284 AFNRAPSTTTGKSPFEVVYGVNPMMPTDLAPIKRNTIDY-DAKKRVEQMLHIHEQVKKQI 1342

Query: 3758 VTTTEKYKADADRKRRAVDFEVGDFVWAILTKDRFPAREYSKLASKKIGPVEIVEKINSN 3937
                E +K  +   +    FE GD VW  L K+RFP +  +KL  +  GP E++EK  SN
Sbjct: 1343 EKANEAHKGKSKGVKGTKSFEPGDLVWIHLRKERFPEKRKNKLMPRADGPFEVLEKFGSN 1402

Query: 3938 AYRLLLPSHIHTSDVFNVKHLVPF 4009
            AY++ LP        FNV  L P+
Sbjct: 1403 AYKINLPGEYGVHGTFNVGDLSPY 1426


>ref|XP_007051412.1| DNA/RNA polymerases superfamily protein [Theobroma cacao]
            gi|508703673|gb|EOX95569.1| DNA/RNA polymerases
            superfamily protein [Theobroma cacao]
          Length = 1452

 Score = 1155 bits (2988), Expect = 0.0
 Identities = 597/1274 (46%), Positives = 806/1274 (63%), Gaps = 38/1274 (2%)
 Frame = +2

Query: 308  LRQGSRSVDDYSNEFYEFLARVDVNDSPTQLVSRYIGGLRLQLQDVLNMFDPLTVAEAHQ 487
            + Q + +V++Y++EF     RV + +S  Q+ SRY+ GL   ++D + +     + +A Q
Sbjct: 104  IEQNNMTVEEYTSEFNNLSIRVGLAESNEQITSRYLAGLNHSIRDEMGVVRLYNIEDARQ 163

Query: 488  RASQAEKQA-------------------ARR--TTANLRLXXXXXXXXXXXXXXXXXXXX 604
             A  AEK+                    ARR   T+                        
Sbjct: 164  YALSAEKRVLRYGARKPLYGTHWQNNSEARRGYPTSQQNYQGAATINKTNRGATNVEKND 223

Query: 605  AQQSAPPRGYSNPSQGRPGFRG------CFNCGDLSHRQADCPKPPTGSRGLFTDAVESE 766
              +S  P G  N S      RG      CF CG+  H    CP+     R +    +  E
Sbjct: 224  KGKSIMPYGGQNSSGSSTNKRGSNSHIRCFTCGEKGHTSFACPQ-----RKVNLAELGEE 278

Query: 767  PLPLFDTPIXXXXXXXXXXXXXSGDVGPMLMLRRTFLSPRALETE-WLRNNLFQSTCTIG 943
              P++D                    G  L++RR   +    E E W R ++F++     
Sbjct: 279  LEPVYD-----EYKEEVEEIDVYPAQGESLVVRRIMTTTVNEEAEDWKRRSIFRTRVVCE 333

Query: 944  GKVCTFIIDAGSCENVISEVAVSKLNLTTESHPKPYRLSWLSQGTDVMVSKRVLVNFSIG 1123
            GKVC  +ID GS EN+IS+ AV+KL L T  HP PY++ WL +G +V V+ + LV F++G
Sbjct: 334  GKVCDLVIDGGSMENIISKEAVNKLKLPTNKHPYPYKIGWLKKGHEVPVTTQCLVKFTMG 393

Query: 1124 PTYQDSIYCDVVPMDACHLLLGRPWQYDNTVQHDGRCNTYSFMFRGKKIVLV-XXXXXXX 1300
                D   CDVVPMD  H+L+GRPW YD+ + H  + NTYSF    K+  L         
Sbjct: 394  DNSDDEALCDVVPMDVGHILVGRPWLYDHDMVHKTKPNTYSFYKNNKRYTLYPLREETKK 453

Query: 1301 XXXXXXXXXXXLLSRVPFQTAMEESGLVFVLLAQPLGD---STSXXXXXXXXXXXXXFAD 1471
                        LS   F+    E G+++ L+ + L     S S             F +
Sbjct: 454  SANHKISKITRYLSAENFEAEGSEMGIMYALVTKHLKSDQMSKSPQYPTEIQQLLKEFGE 513

Query: 1472 VFPESLPSTLPPLRDIQHHIDLVAGAALPNRPHYRMSPKEHEELRRQVEELLARGHIRES 1651
            +F E LP +LPPLR IQH IDLV GAALPN P YRM P +  E++RQVEEL  +G +RES
Sbjct: 514  LFNEDLPKSLPPLRSIQHAIDLVPGAALPNLPAYRMPPMQRAEVQRQVEELFEKGLVRES 573

Query: 1652 LSPCAVPALLTPKKDGTWRMCVDSRAINKITVRYRFPIPRLDDLLDQLGGACVFSKLDLK 1831
             SPCA PALL PKKDG+WRMCVDSRAINKIT++YRFPIPRLD++LDQL G+ VFSK+DLK
Sbjct: 574  KSPCACPALLAPKKDGSWRMCVDSRAINKITIKYRFPIPRLDEMLDQLVGSRVFSKIDLK 633

Query: 1832 SGYHQIRIRTGDEWKTAFKTREGLYEWLVMPFGLSNAPSTFMRVMNQALRPFIGKFVVVY 2011
            SGYHQIR+R GDEWKTAFKT +GL+EWLVMPFGLSNAPSTFMRVM + L+PF+  FVVVY
Sbjct: 634  SGYHQIRMRDGDEWKTAFKTPDGLFEWLVMPFGLSNAPSTFMRVMAEVLKPFLNSFVVVY 693

Query: 2012 FDDILIYSTDPILHIQHLREVLLVLRRDQFYAAPAKCAFLTTSIQFLGYVVSRDGLMVDP 2191
            FDDILIYS     H++HLR+VL VL+++Q Y    KC+F+   + FLG++VS +GL  DP
Sbjct: 694  FDDILIYSHTKEKHLKHLRQVLEVLQKEQLYINLKKCSFMQPEVVFLGFIVSAEGLKPDP 753

Query: 2192 AKVDAVSNWPIPSSITEVRSFHGLASFYRRFIPHFSGIMAPLTDCMKGPKFQWTAEAEVA 2371
             K+ A+S WP P+SI EVRSFHGLASFYRRFI +FS IM+P+T+ +K   F+W+  A+ A
Sbjct: 754  EKIRAISEWPAPTSIKEVRSFHGLASFYRRFIRNFSSIMSPITESLKKDGFEWSHSAQKA 813

Query: 2372 FLEVKRRLISAPILVLPDFSLPFELHCDASHTGVGAVLSQCGRPVAYFSEKLSGAKLRFS 2551
            F  VK  +  AP+L LPDF   F + CDAS+ G+GAVLSQ GRP+ +FSEKL+ ++ R+S
Sbjct: 814  FERVKALMTEAPVLALPDFEKLFVVECDASYVGIGAVLSQDGRPIEFFSEKLTDSRRRYS 873

Query: 2552 TYDVEFYAIVQAIKHWRHYLFQREFILYTDHDSLKHLGSQDKISHRHASWISYLQQFTFV 2731
            TYD+EFYA+V+AI+HW+HYL  REF +Y+DH +L++L SQ K+S++HA W S+L +F F 
Sbjct: 874  TYDLEFYALVRAIRHWQHYLAYREFAVYSDHQALRYLHSQKKLSNQHAKWSSFLNEFNFS 933

Query: 2732 IKHKAGVSNRVADALSRRHGLLMELRVHVPGFDSFMDLYVDDPYFSHVLTQIQ---QGEP 2902
            +K+K+G SN VADALSRR  +L  +   V GF+   + Y  D YFS ++  +Q   Q E 
Sbjct: 934  LKYKSGQSNTVADALSRRCKMLSVMSTQVTGFEELKNQYSSDSYFSKIIADLQGSLQAEN 993

Query: 2903 TAFLLEDGFIFRGTQLCIPACSLRLKIIQELHNE---GHVGRDRTLQLLAASYFWPSMRR 3073
              + L + ++F+G QLCIP  SLR +II+ELH     GH GRD+TL ++A  Y+WP MRR
Sbjct: 994  LPYRLHEDYLFKGNQLCIPEGSLREQIIRELHGNGLGGHFGRDKTLVMVADRYYWPKMRR 1053

Query: 3074 EVGKFVERCRVCQLAKGAATNAGLYMPLPIPTQPWSDVSMDFVLGLPRTQRGNDSLYVVV 3253
            +V + V+RC  C   KG+A N GLY+PLP P  PW  +SMDFVLGLP+T +G DS++VVV
Sbjct: 1054 DVERLVKRCPACLFGKGSAQNTGLYVPLPEPDAPWIHLSMDFVLGLPKTTKGFDSIFVVV 1113

Query: 3254 DRFSKMVHFIPCKKTSDAVSVAQLYFRDVYRLHGLPASIVSDRDTRFVSHFWRSLWRTVN 3433
            DRFSKM HFIPC +TSDA  +A+L+FR++  LHG+P SIVSDR  +F+ +FWR+LWR   
Sbjct: 1114 DRFSKMAHFIPCFRTSDATHIAELFFREIVILHGIPTSIVSDRHVKFMGYFWRTLWRKFG 1173

Query: 3434 TQLNFSSAYHPQTDGQTEVVNRSLGNLLRCLVGDHPKAWDLKLPQAEFAHNHAVNRSTGF 3613
            T+L +SS  HPQTDGQTEVVNRSLGN+LRCL+ ++PK WDL +PQAEFA+N++VNRS   
Sbjct: 1174 TELKYSSTCHPQTDGQTEVVNRSLGNMLRCLIQNNPKTWDLVIPQAEFAYNNSVNRSIKK 1233

Query: 3614 SPFYVVYGLAPRGPLDLLALPSKVRPHATADDFIGHLQQVHQQTHSQLVTTTEKYKADAD 3793
            +PF   YGL P+  LDL+ LP + R     + F   ++++H++  + L  +  +Y   A+
Sbjct: 1234 TPFEAAYGLKPQHVLDLVPLPQEARVSNEGELFADQIRKIHEEVKAALKASNAEYSFTAN 1293

Query: 3794 RKRRAVDFEVGDFVWAILTKDRFPAREYSKLASKKIGPVEIVEKINSNAYRLLLPSHIHT 3973
            + RR  +FE GD V   L ++RFP   Y KL S+K GP ++++KI+SNAY + LP  +  
Sbjct: 1294 QHRRKQEFEEGDQVLVHLRQERFPKGTYHKLKSRKFGPCKVLKKISSNAYLIELPPELQI 1353

Query: 3974 SDVFNVKHLVPFVG 4015
            + +FN+  L PF G
Sbjct: 1354 NPIFNILDLYPFDG 1367


>ref|XP_007220740.1| hypothetical protein PRUPE_ppa023598mg [Prunus persica]
            gi|462417202|gb|EMJ21939.1| hypothetical protein
            PRUPE_ppa023598mg [Prunus persica]
          Length = 1457

 Score = 1155 bits (2987), Expect = 0.0
 Identities = 616/1371 (44%), Positives = 821/1371 (59%), Gaps = 40/1371 (2%)
 Frame = +2

Query: 17   RVEIPTFNGSLKPEELIDWLSQVDEILDFKEVPDDRRVSLVTMRLTGRAQAWWQQLKVSR 196
            + EIP F G+LK E+ +DWL +V+   D  EVP+ + V +V  RL   A  WW QL+ SR
Sbjct: 81   KAEIPNFWGNLKIEDFLDWLVEVERFFDIMEVPEHKMVKMVAFRLKATAAVWWDQLQNSR 140

Query: 197  VRHGKPKITSWDKFKKHIRSAFLPYNFDRELYQRFQNLRQGSRSVDDYSNEFYEFLARVD 376
             R GK ++ +W K K  +   FLP ++++ LY+ +    QG+RSV +Y+ EF     R  
Sbjct: 141  QRQGKQRVRTWRKMKSLMMERFLPTDYEQILYRMYLGCTQGNRSVSEYTEEFMHLAERNH 200

Query: 377  VNDSPTQLVSRYIGGLRLQLQDVLNMFDPLTVAEAHQRASQAEKQAARRTTANLRLXXXX 556
            + ++  Q V+RY  GL++ +Q+ + M +  T+ EA   A +AE     +   N R     
Sbjct: 201  LTETDNQKVARYNNGLKISIQEKIGMQNIWTLQEAINMAMKAELLEKEKRQPNFRRNTTE 260

Query: 557  XXXXXXXXXXXXXXXXAQQSAPPRGYSNP-----------SQGRPGFRG----------- 670
                              Q  P RG + P           S  R   RG           
Sbjct: 261  ASEYATGASSGSGDKGKVQQQP-RGTTKPATTVQNKNFNESSSRTFNRGQSRNQSQNPYA 319

Query: 671  ------CFNCGDLSHRQADCPKPPTGSRGLFTDAVESEPLPLFDTPIXXXXXXXXXXXXX 832
                  C+ C    HR   CP+    ++  F + V+ +        +             
Sbjct: 320  KPRTDICYRCQKPGHRSNVCPE---WTQANFIEEVDEDEEK---DEVGEDDYAGAEFAIE 373

Query: 833  SGDVGPMLMLRRTFLSPRALETEWLRNNLFQSTCTIGGKVCTFIIDAGSCENVISEVAVS 1012
                  +L+L+R  L+P+    E  R+++ +S C+I  KVC  I+D GSCEN +S+  V 
Sbjct: 374  ERMERIILVLQRVLLAPKE---EGQRHSICRSLCSIKNKVCDVIVDNGSCENFVSKKLVE 430

Query: 1013 KLNLTTESHPKPYRLSWLSQGTDVMVSKRVLVNFSIGPTYQDSIYCDVVPMDACHLLLGR 1192
             L L+TE H +PY L W+ +G  V V++   V  SIG  Y D + CDV+ MDACH+LLG+
Sbjct: 431  HLQLSTEPHVRPYSLGWVKKGPSVRVAETYSVPLSIGKHYIDDVLCDVIDMDACHILLGQ 490

Query: 1193 PWQYDNTVQHDGRCNTYSFMFRGKKIVLVXXXXXXXXXXXXXXXXXXLL---SRVPFQTA 1363
             WQ+D    + GR N   F +  +KI +                   L    S       
Sbjct: 491  LWQFDVDATYKGRDNVILFSWNNRKIAMATTKPSKQSVEPKTRSSSFLTLISSEQELNKV 550

Query: 1364 MEESGLVFVLLAQPL-----GDSTSXXXXXXXXXXXXXFADVFPESLPSTLPPLRDIQHH 1528
            ++E+     L+ + L     G+S               F ++  E LP+ LP +RDIQH 
Sbjct: 551  VKEAEYFCPLVLKGLLKLGRGESD---IPQDVQKILSQFQELLSEKLPNELPSMRDIQHR 607

Query: 1529 IDLVAGAALPNRPHYRMSPKEHEELRRQVEELLARGHIRESLSPCAVPALLTPKKDGTWR 1708
            IDLV GA LPN PHYRMSPKE++ LR Q+EELL +G IRESLSPCAVP LL PKKD TWR
Sbjct: 608  IDLVPGANLPNLPHYRMSPKENDILREQIEELLQKGFIRESLSPCAVPVLLVPKKDKTWR 667

Query: 1709 MCVDSRAINKITVRYRFPIPRLDDLLDQLGGACVFSKLDLKSGYHQIRIRTGDEWKTAFK 1888
            MCVDSRAINKITV+ RFPIPRL+D+LD L G+ VFSK+DL+SGYHQIRIR GDEWKTAFK
Sbjct: 668  MCVDSRAINKITVKSRFPIPRLEDMLDVLSGSRVFSKIDLRSGYHQIRIRPGDEWKTAFK 727

Query: 1889 TREGLYEWLVMPFGLSNAPSTFMRVMNQALRPFIGKFVVVYFDDILIYSTDPILHIQHLR 2068
            +++GL+EWLVMPFGLSNAPSTFMR+MNQ LRPFIG FVVVYFDDILIYST    H+ HLR
Sbjct: 728  SKDGLFEWLVMPFGLSNAPSTFMRLMNQVLRPFIGSFVVVYFDDILIYSTTKEEHLVHLR 787

Query: 2069 EVLLVLRRDQFYAAPAKCAFLTTSIQFLGYVVSRDGLMVDPAKVDAVSNWPIPSSITEVR 2248
            +VL VLR ++ Y    KC F T  + FLG+VV  +G+ VD  K+ A+ +WP P  ++EVR
Sbjct: 788  QVLDVLRENKLYMNLKKCTFCTNKLLFLGFVVGENGIQVDDEKIKAILDWPTPKIVSEVR 847

Query: 2249 SFHGLASFYRRFIPHFSGIMAPLTDCMKGPKFQWTAEAEVAFLEVKRRLISAPILVLPDF 2428
            SFHGLA+FYRRF+ HFS I AP+T+C+K  +F W  E E +F ++K +L +AP+L LP+F
Sbjct: 848  SFHGLATFYRRFVRHFSSITAPITECLKKGRFSWGDEQERSFADIKEKLCTAPVLALPNF 907

Query: 2429 SLPFELHCDASHTGVGAVLSQCGRPVAYFSEKLSGAKLRFSTYDVEFYAIVQAIKHWRHY 2608
               FE+ CDAS  GVGAVLSQ  RPVA+FSEKLS A  ++STYD EFYA+V+A+K W HY
Sbjct: 908  EKVFEVECDASGVGVGAVLSQDKRPVAFFSEKLSDACQKWSTYDQEFYAVVRALKQWEHY 967

Query: 2609 LFQREFILYTDHDSLKHLGSQDKISHRHASWISYLQQFTFVIKHKAGVSNRVADALSRRH 2788
            L Q+EF+L+TDH +L+              W+++LQ+F+FVI+H +G +NRV DALSRR 
Sbjct: 968  LIQKEFVLFTDHQALR--------------WVTFLQKFSFVIRHTSGKTNRVVDALSRRA 1013

Query: 2789 GLLMELRVHVPGFDSFMDLYVDDPYFSHVLTQIQQGEPTA-FLLEDGFIFRGTQLCIPAC 2965
             LL+     V GF+   +LY  D  F  + T+    EP A + L +G++F+G QLCIP  
Sbjct: 1014 SLLVTQTQEVVGFECLKELYEGDDDFREIWTKCTNQEPMADYFLNEGYLFKGNQLCIPVS 1073

Query: 2966 SLRLKIIQELHN---EGHVGRDRTLQLLAASYFWPSMRREVGKFVERCRVCQLAKGAATN 3136
            SLR K+IQ+LH     GH+GRD+T+  +   ++WP ++R+VG  V +C  CQ +KG   N
Sbjct: 1074 SLREKLIQDLHGGGLSGHLGRDKTIAGMKERFYWPQLKRDVGTIVRKCYTCQTSKGQVQN 1133

Query: 3137 AGLYMPLPIPTQPWSDVSMDFVLGLPRTQRGNDSLYVVVDRFSKMVHFIPCKKTSDAVSV 3316
             GLYMPLP+P   W D++MDFVLGLPRTQRG DS+YVVVDRFS M HFI CKKT DA ++
Sbjct: 1134 TGLYMPLPVPNDIWQDLAMDFVLGLPRTQRGMDSVYVVVDRFSNMAHFIACKKTDDASNI 1193

Query: 3317 AQLYFRDVYRLHGLPASIVSDRDTRFVSHFWRSLWRTVNTQLNFSSAYHPQTDGQTEVVN 3496
            A+L FR+V RLHG+P SI SDRD +F+SHFW +LWR   T LN SS  HPQTD QTEV  
Sbjct: 1194 AKLVFREVVRLHGVPTSITSDRDAKFLSHFWITLWRLFGTTLNRSSTTHPQTDSQTEVTT 1253

Query: 3497 RSLGNLLRCLVGDHPKAWDLKLPQAEFAHNHAVNRSTGFSPFYVVYGLAPRGPLDLLALP 3676
            R+LGN++                  EFA+N  ++ +TG SPF +VY   P   +DL+ LP
Sbjct: 1254 RTLGNMV------------------EFAYNSKIHSATGKSPFSIVYTAIPNHVVDLVKLP 1295

Query: 3677 SKVRPHATADDFIGHLQQVHQQTHSQLVTTTEKYKADADRKRRAVDFEVGDFVWAILTKD 3856
               +    A +    +  V  +   +L  T  KYKA ADR RR   F+ GD V   L K+
Sbjct: 1296 RGQQTSVAAKNLAEEVVAVRDEVKQKLEQTNAKYKAAADRHRRVKVFQEGDSVMIFLRKE 1355

Query: 3857 RFPAREYSKLASKKIGPVEIVEKINSNAYRLLLPSHIHTSDVFNVKHLVPF 4009
            RFP   YSKL  KK GP +++++IN NAY + LP  +   ++FNV  L  F
Sbjct: 1356 RFPVGTYSKLKPKKYGPYKVLKRINDNAYVIELPDSMGIFNIFNVADLYEF 1406


>ref|XP_007221295.1| hypothetical protein PRUPE_ppa024499mg, partial [Prunus persica]
            gi|462417929|gb|EMJ22494.1| hypothetical protein
            PRUPE_ppa024499mg, partial [Prunus persica]
          Length = 1364

 Score = 1013 bits (2618), Expect = 0.0
 Identities = 540/1145 (47%), Positives = 708/1145 (61%), Gaps = 13/1145 (1%)
 Frame = +2

Query: 614  SAPPRGYSNPSQGRPGFRGCFNCGDLSHRQADCPKPP---TGSRGLFTDAVESEPLP-LF 781
            +APP     P      +  CF+C    H  + CP+     + S     D    +PL  ++
Sbjct: 272  TAPPT--KGPIVSNNSYIECFHCHAKGHIASRCPQRTLTISASTDDHCDVEIVDPLEGVY 329

Query: 782  DTPIXXXXXXXXXXXXXSGDVGPMLMLRRTFLSPRALETEWLRNNLFQSTCTIGGKVCTF 961
            D  I               D+   + + R   S  AL   W R ++F +      + C  
Sbjct: 330  DPEIDDCF---------DDDILHQVSVMRCIYSALALLDSWKRTSIFHTYVPCNNQTCKL 380

Query: 962  IIDAGSCENVISEVAVSKLNLTTESHPKPYRLSWLSQGTDVMVSKRVLVNFSIGPTYQDS 1141
            +ID+GS  NVIS+ AV++LNL  E HP P+ ++W+ + T + V++R LV+  +G T  + 
Sbjct: 381  VIDSGSTMNVISKSAVTRLNLKPEPHPHPFHVAWVDK-TKLPVTERCLVSLKLG-TCDED 438

Query: 1142 IYCDVVPMDACHLLLGRPWQYDNTVQHDGRCNTYSFMFRGKKIVLVXXXXXXXXXXXXXX 1321
            IY D++PM+  H+LLGRPW YD+ VQ+ GR NTY+F   GK I L               
Sbjct: 439  IYLDLLPMNVAHVLLGRPWLYDHCVQNCGRENTYTFQHEGKSITL------RPANPAIKP 492

Query: 1322 XXXXLLSRVPFQTAMEESGLVFVLLA------QPLGDSTSXXXXXXXXXXXXXFADVFPE 1483
                + +  P QT    SG    LL+      + +  + S             F+DV  +
Sbjct: 493  TKTNITTSSPSQTG-NVSGHQLALLSYGEFEKEKISAAPSYQQPEPLHQLLNEFSDVMLD 551

Query: 1484 SLPSTLPPLRDIQHHIDLVAGAALPNRPHYRMSPKEHEELRRQVEELLARGHIRESLSPC 1663
             LP+ LPP+RDIQH IDLV G+ L N PHYRM+  E  EL  Q++ LL +G IR SLS C
Sbjct: 552  DLPNELPPMRDIQHAIDLVPGSQLLNLPHYRMNSSERAELNTQIQGLLDKGFIRHSLSSC 611

Query: 1664 AVPALLTPKKDGTWRMCVDSRAINKITVRYRFPIPRLDDLLDQLGGACVFSKLDLKSGYH 1843
            AVP LLTPKKDG+WRMCVDSRAINKITV+YRFPIPRL+ +L++L G+  FSK+DL+SGYH
Sbjct: 612  AVPVLLTPKKDGSWRMCVDSRAINKITVKYRFPIPRLEAMLEELAGSKWFSKIDLRSGYH 671

Query: 1844 QIRIRTGDEWKTAFKTREGLYEWLVMPFGLSNAPSTFMRVMNQALRPFIGKFVVVYFDDI 2023
            QIRIR GDEWKTAFKT +GLYEWLVMPFG+SNAPSTFMRVM   LRP+IGKF+VVYFDDI
Sbjct: 672  QIRIREGDEWKTAFKTPDGLYEWLVMPFGMSNAPSTFMRVMTHVLRPYIGKFLVVYFDDI 731

Query: 2024 LIYSTDPILHIQHLREVLLVLRRDQFYAAPAKCAFLTTSIQFLGYVVSRDGLMVDPAKVD 2203
            LIYS     H+QHLR +  +LR+++ +                           DP KV 
Sbjct: 732  LIYSHSKEDHLQHLRTIFHMLRQEKLFVNLKNA---------------------DPDKVH 770

Query: 2204 AVSNWPIPSSITEVRSFHGLASFYRRFIPHFSGIMAPLTDCMKGPKFQWTAEAEVAFLEV 2383
            A+ NWP+PS++TE RSFHGLASFYRRFIP FS IMAP+TDCMK  +F+WT  A  AF  +
Sbjct: 771  AIVNWPLPSTLTETRSFHGLASFYRRFIPSFSTIMAPITDCMKQGEFRWTHAATRAFEAL 830

Query: 2384 KRRLISAPILVLPDFSLPFELHCDASHTGVGAVLSQCGRPVAYFSEKLSGAKLRFSTYDV 2563
            K+++  AP+L  P+ +  FE+ CDAS  G+G VLSQ G  VAYF+EKL+ AK ++STYD 
Sbjct: 831  KQKMTEAPVLRHPELTKVFEVACDASGVGIGGVLSQEGHLVAYFNEKLNEAKQKYSTYDK 890

Query: 2564 EFYAIVQAIKHWRHYLFQREFILYTDHDSLKHLGSQDKISHRHASWISYLQQFTFVIKHK 2743
            EFYAIV+A+++W++YL   EF+LY+DH +L++L SQ  +S RH  W  YLQ FTFVI+H+
Sbjct: 891  EFYAIVRALRYWQYYLLPNEFVLYSDHQALRYLHSQRNVSSRHIKWTEYLQIFTFVIRHR 950

Query: 2744 AGVSNRVADALSRRHGLLMELRVHVPGFDSFMDLYVDDPYFSHVLTQIQQGEPTAFLLED 2923
             GV N+VADALSR                               +T   + +   FLL D
Sbjct: 951  PGVDNKVADALSRE------------------------------VTAGNRRDHVDFLLRD 980

Query: 2924 GFIFRGTQLCIPACSLRLKIIQELHN---EGHVGRDRTLQLLAASYFWPSMRREVGKFVE 3094
            G++FRGTQLCIP  SLR  ++ ELH     GH G+D+T+ L+A  ++WPS++R+V   + 
Sbjct: 981  GYLFRGTQLCIPRTSLRDFLVWELHAGGLAGHFGKDKTITLVADRFYWPSLKRDVAHILA 1040

Query: 3095 RCRVCQLAKGAATNAGLYMPLPIPTQPWSDVSMDFVLGLPRTQRGNDSLYVVVDRFSKMV 3274
            +C  CQLAK    N GLY PLPIP  PW D+SMDFVLGLP+T RG+DS+ VVVDRFSKM 
Sbjct: 1041 QCCTCQLAKARKQNTGLYTPLPIPHTPWKDLSMDFVLGLPKTARGHDSILVVVDRFSKMA 1100

Query: 3275 HFIPCKKTSDAVSVAQLYFRDVYRLHGLPASIVSDRDTRFVSHFWRSLWRTVNTQLNFSS 3454
            HF+PC K +DA  VA+L+F++V RLHGLP SIVSDRD +FVS+FW++LW+   T L FSS
Sbjct: 1101 HFLPCSKAADASYVAKLFFKEVIRLHGLPVSIVSDRDVKFVSYFWKTLWKLFGTSLKFSS 1160

Query: 3455 AYHPQTDGQTEVVNRSLGNLLRCLVGDHPKAWDLKLPQAEFAHNHAVNRSTGFSPFYVVY 3634
            A+HPQTDGQTEVVNRSLG+LLRCLVGD    WDL LP AEFA+N++ NR+TG SPF +VY
Sbjct: 1161 AFHPQTDGQTEVVNRSLGDLLRCLVGDKQGNWDLILPVAEFAYNNSANRTTGKSPFEIVY 1220

Query: 3635 GLAPRGPLDLLALPSKVRPHATADDFIGHLQQVHQQTHSQLVTTTEKYKADADRKRRAVD 3814
            G+ PR P+DL  LP    P  +A  F  H+                              
Sbjct: 1221 GVMPRPPIDLAPLPIDACPSESATTFAEHIH----------------------------- 1251

Query: 3815 FEVGDFVWAILTKDRFPAREYSKLASKKIGPVEIVEKINSNAYRLLLPSHIHTSDVFNVK 3994
            F+ GD+V   +  +RFP   + KL ++ +G   I+ K+ +NAY + LPS +H S +FNV 
Sbjct: 1252 FQEGDYVMVRVCPERFPKHSFKKLHARSMGLYRILRKLGANAYLVELPSDVHISPIFNVS 1311

Query: 3995 HLVPF 4009
             L P+
Sbjct: 1312 DLFPY 1316


>ref|XP_007206823.1| hypothetical protein PRUPE_ppa025991mg [Prunus persica]
            gi|462402465|gb|EMJ08022.1| hypothetical protein
            PRUPE_ppa025991mg [Prunus persica]
          Length = 1274

 Score =  991 bits (2562), Expect = 0.0
 Identities = 503/975 (51%), Positives = 646/975 (66%), Gaps = 16/975 (1%)
 Frame = +2

Query: 1139 SIYCDVVPMDACHLLLGRPWQYDNTVQHDGRCNTYSFMFRGKKIVLVXXXXXXXXXXXXX 1318
            SI+   VP    H+LLGRPW YD  V+  G  NTY+F   GK I L              
Sbjct: 215  SIFQTYVP--CAHVLLGRPWLYDRRVKSSGWENTYTFQHEGKNITLKPSNLAIKPTKDVQ 272

Query: 1319 XXXXX----------LLSRVPFQTAMEESGLVFVLLAQPLGDSTSXXXXXXXXXXXXXFA 1468
                           +LS V F   ++E+G+VF LL +   D T+             F+
Sbjct: 273  TKLSIKEKALEHRLSILSPVDFAHELQETGVVFALLLKSASDYTTPLAEPIQQLLTE-FS 331

Query: 1469 DVFPESLPSTLPPLRDIQHHIDLVAGAALPNRPHYRMSPKEHEELRRQVEELLARGHIRE 1648
            +V P+ LP  LPP R+IQH IDLV G+ +PN P+YRM+P E  +L RQ++ LLA+G IR 
Sbjct: 332  NVIPDDLPDDLPPAREIQHAIDLVPGSQIPNLPYYRMNPPERSKLNRQIQGLLAKGFIRH 391

Query: 1649 SLSPCAVPALLTPKKDGTWRMCVDSRAINKITVRYRFPIPRLDDLLDQLGGACVFSKLDL 1828
            SLSPCAVP LLTPKKD +W MCVDS A+NKI V+YRFPIPRL+D+LD L G+  FSK+DL
Sbjct: 392  SLSPCAVPVLLTPKKDCSWGMCVDSCAVNKIIVKYRFPIPRLEDMLDDLAGSQWFSKIDL 451

Query: 1829 KSGYHQIRIRTGDEWKTAFKTREGLYEWLVMPFGLSNAPSTFMRVMNQALRPFIGKFVVV 2008
            +SGYHQI IR GDEWKTAFKT +GLYEWLVMPFG+SNAPSTFMRVM   LRP+IGKF+VV
Sbjct: 452  RSGYHQISIREGDEWKTAFKTPDGLYEWLVMPFGMSNAPSTFMRVMTHVLRPYIGKFLVV 511

Query: 2009 YFDDILIYSTDPILHIQHLREVLLVLRRDQFYAAPAKCAFLTTSIQFLGYVVSRDGLMVD 2188
            YFDDILIYS     HIQHLR +   LR+++ YA   KC+FL   + FLG+ +S  G+  D
Sbjct: 512  YFDDILIYSRSREEHIQHLRTIFSTLRKEKLYANLKKCSFLQPQVLFLGFNISAAGVSTD 571

Query: 2189 PAKVDAVSNWPIPSSITEVRSFHGLASFYRRFIPHFSGIMAPLTDCMKGPKFQWTAEAEV 2368
            PAKV+A+ NWP P+++TE RSFHGL SFYRRFIP FS IMA +TDCMK   F WT  A  
Sbjct: 572  PAKVEAIINWPTPTTLTEARSFHGLTSFYRRFIPGFSIIMALITDCMKQGAFLWTHAAAK 631

Query: 2369 AFLEVKRRLISAPILVLPDFSLPFELHCDASHTGVGAVLSQCGRPVAYFSEKLSGAKLRF 2548
            AF  +K+++  AP+   PD +  FE+ CDAS  G+G VLSQ G PVAYFSEKL+ AK R+
Sbjct: 632  AFTILKQKMTQAPVFRHPDLTKVFEVTCDASGVGIGGVLSQEGHPVAYFSEKLNEAKQRY 691

Query: 2549 STYDVEFYAIVQAIKHWRHYLFQREFILYTDHDSLKHLGSQDKISHRHASWISYLQQFTF 2728
            ST+D EFY +VQA+++W++YL   EF+LY+DH +LK+L SQ  IS               
Sbjct: 692  STHDKEFYDVVQALRYWQYYLLPNEFVLYSDHQALKYLHSQRTIS--------------- 736

Query: 2729 VIKHKAGVSNRVADALSRRHGLLMELRVHVPGFDSFMDLYVDDPYFSHVLTQIQQG---E 2899
                   + N+VADALSR   +L  + V V GFD     Y   P F  +  ++  G   E
Sbjct: 737  ------SIDNKVADALSRVATILHTMTVQVNGFDRIKTEYSSCPDFGIIFHEVSNGNRRE 790

Query: 2900 PTAFLLEDGFIFRGTQLCIPACSLRLKIIQELHN---EGHVGRDRTLQLLAASYFWPSMR 3070
               F+  DGF+FR TQLCIP  SL   ++ ELH     GH G+D+T+ L+   ++WPS++
Sbjct: 791  YVDFITRDGFLFRRTQLCIPRTSLLEFLVWELHGGGLAGHFGKDKTIALVEDHFYWPSLK 850

Query: 3071 REVGKFVERCRVCQLAKGAATNAGLYMPLPIPTQPWSDVSMDFVLGLPRTQRGNDSLYVV 3250
            R+V   + +CR CQLAK    N G+Y PLPIP  PW D+SMDFVLGLP+T RG DS++V+
Sbjct: 851  RDVAHLISQCRTCQLAKARKRNTGVYTPLPIPHAPWKDLSMDFVLGLPKTSRGYDSIFVI 910

Query: 3251 VDRFSKMVHFIPCKKTSDAVSVAQLYFRDVYRLHGLPASIVSDRDTRFVSHFWRSLWRTV 3430
            VD FSKM HF+PC K +DA  +A+L+F++V RLHGL  SIVSDRD +FVS+FW++LW+  
Sbjct: 911  VDCFSKMAHFLPCAKNTDASYMAKLFFKEVVRLHGLLVSIVSDRDFKFVSYFWKTLWKLF 970

Query: 3431 NTQLNFSSAYHPQTDGQTEVVNRSLGNLLRCLVGDHPKAWDLKLPQAEFAHNHAVNRSTG 3610
             T L FSSA+HPQTDGQTEVVNRSLG+LL CLVGD P  WDL LP AEF +N++VNRSTG
Sbjct: 971  GTTLKFSSAFHPQTDGQTEVVNRSLGDLLHCLVGDKPGNWDLLLPVAEFTYNNSVNRSTG 1030

Query: 3611 FSPFYVVYGLAPRGPLDLLALPSKVRPHATADDFIGHLQQVHQQTHSQLVTTTEKYKADA 3790
             SPF VV+G +PR P+DL+ALP   R   +A  F  H++Q+H     Q+   T+ YK  A
Sbjct: 1031 KSPFEVVHGFSPRSPVDLVALPVAARSSDSATSFAEHIRQLHDDVRRQISMHTDTYKLAA 1090

Query: 3791 DRKRRAVDFEVGDFVWAILTKDRFPAREYSKLASKKIGPVEIVEKINSNAYRLLLPSHIH 3970
            +  RR  +F  GDFV   +  +RFP   + KL ++ +GP  I++K+ SNAY + LP+++H
Sbjct: 1091 NAHRRQQEFREGDFVMVRVCPERFPKHSFKKLHARSMGPYRIIKKLGSNAYLIELPANMH 1150

Query: 3971 TSDVFNVKHLVPFVG 4015
             S +FNV  L P+ G
Sbjct: 1151 ISPIFNVSDLSPYRG 1165


>ref|XP_007207981.1| hypothetical protein PRUPE_ppa015715mg, partial [Prunus persica]
            gi|462403623|gb|EMJ09180.1| hypothetical protein
            PRUPE_ppa015715mg, partial [Prunus persica]
          Length = 1445

 Score =  979 bits (2532), Expect = 0.0
 Identities = 483/888 (54%), Positives = 616/888 (69%), Gaps = 6/888 (0%)
 Frame = +2

Query: 1370 ESGLVFVLLAQPLGDSTSXXXXXXXXXXXXXFADVFPESLPSTLPPLRDIQHHIDLVAGA 1549
            ++G+VF LL +   D T+             F+DV P+ LP  LPP R+IQH IDLV G+
Sbjct: 483  KTGVVFALLLKLASDYTTPLADPIQQLLTE-FSDVIPDDLPDDLPPAREIQHAIDLVPGS 541

Query: 1550 ALPNRPHYRMSPKEHEELRRQVEELLARGHIRESLSPCAVPALLTPKKDGTWRMCVDSRA 1729
             +PN PHYRM+P E  EL RQ++ LLA+G IR SLSPCAVP LLTPKKDG+WRMCVDSRA
Sbjct: 542  QIPNLPHYRMNPPERVELNRQIQGLLAKGFIRHSLSPCAVPVLLTPKKDGSWRMCVDSRA 601

Query: 1730 INKITVRYRFPIPRLDDLLDQLGGACVFSKLDLKSGYHQIRIRTGDEWKTAFKTREGLYE 1909
            +NKITV+YRFPIPRL+D+LD L G+  FSK+DL+           DEWKTAFKT +GLYE
Sbjct: 602  VNKITVKYRFPIPRLEDMLDDLAGSQWFSKIDLRR----------DEWKTAFKTPDGLYE 651

Query: 1910 WLVMPFGLSNAPSTFMRVMNQALRPFIGKFVVVYFDDILIYSTDPILHIQHLREVLLVLR 2089
            WLVMPFG+SNAPSTFMRVM   LRP+IGKF+VVYFDDILIYS     H+QHLR +   LR
Sbjct: 652  WLVMPFGMSNAPSTFMRVMTHVLRPYIGKFLVVYFDDILIYSRSREEHLQHLRTIFSTLR 711

Query: 2090 RDQFYAAPAKCAFLTTSIQFLGYVVSRDGLMVDPAKVDAVSNWPIPSSITEVRSFHGLAS 2269
            +++ YA   KC+FL   + FLG+ +S  G+  DPAKV+A+ +WP P+++TE RSFHGL S
Sbjct: 712  KEKLYANLKKCSFLQPEVLFLGFNISAAGVSTDPAKVEAIIDWPTPTTLTEARSFHGLTS 771

Query: 2270 FYRRFIPHFSGIMAPLTDCMKGPKFQWTAEAEVAFLEVKRRLISAPILVLPDFSLPFELH 2449
            FYRRFIP FS IMAP+TDCMK   F WT  A  AF  +K+++  AP+L            
Sbjct: 772  FYRRFIPGFSTIMAPITDCMKQGAFLWTHAAAKAFTILKQKMTQAPVL------------ 819

Query: 2450 CDASHTGVGAVLSQCGRPVAYFSEKLSGAKLRFSTYDVEFYAIVQAIKHWRHYLFQREFI 2629
                       L+Q G PVAYFSEKL+ AK R+STYD EFYA+VQA+++W++YL   EF+
Sbjct: 820  -----------LNQEGHPVAYFSEKLNEAKQRYSTYDKEFYAVVQALRYWQYYLLPNEFV 868

Query: 2630 LYTDHDSLKHLGSQDKISHRHASWISYLQQFTFVIKHKAGVSNRVADALSRRHGLLMELR 2809
            LY+DH +LK+L SQ  IS RH  W  YLQ FTFV++H+ G+ N+VADALSR   +L  + 
Sbjct: 869  LYSDHQALKYLHSQRTISSRHVKWSEYLQIFTFVLRHRPGIDNKVADALSRVATILHTMT 928

Query: 2810 VHVPGFDSFMDLYVDDPYFSHVLTQIQQG---EPTAFLLEDGFIFRGTQLCIPACSLRLK 2980
            V V GFD     Y   P F  +  ++  G   E   F+  DGF+FRGTQLCIP  SLR  
Sbjct: 929  VQVTGFDRIKTEYSSCPDFGIIFHEVSNGNRREYVDFITRDGFLFRGTQLCIPRTSLREF 988

Query: 2981 IIQELHN---EGHVGRDRTLQLLAASYFWPSMRREVGKFVERCRVCQLAKGAATNAGLYM 3151
            ++ ELH     GH G+D+T+ L+   ++WPS++R+V   + +CR CQLAK    N GLY 
Sbjct: 989  LVWELHGGGLAGHFGKDKTIALVEDRFYWPSLKRDVAHLISQCRTCQLAKARKRNTGLYT 1048

Query: 3152 PLPIPTQPWSDVSMDFVLGLPRTQRGNDSLYVVVDRFSKMVHFIPCKKTSDAVSVAQLYF 3331
            PLPIP  PW D+SMDFVLGLP+T RG DS++V+VDRFSKM HF+PC K +DA  VA+L+F
Sbjct: 1049 PLPIPHTPWKDLSMDFVLGLPKTSRGYDSIFVIVDRFSKMAHFLPCAKNTDASYVAKLFF 1108

Query: 3332 RDVYRLHGLPASIVSDRDTRFVSHFWRSLWRTVNTQLNFSSAYHPQTDGQTEVVNRSLGN 3511
            ++V RLHGLP SIVSDRD +FVS+FW++LW+   T L FSSA+HPQTDGQTEVVNRSLG+
Sbjct: 1109 KEVVRLHGLPVSIVSDRDVKFVSYFWKTLWKLFGTTLKFSSAFHPQTDGQTEVVNRSLGD 1168

Query: 3512 LLRCLVGDHPKAWDLKLPQAEFAHNHAVNRSTGFSPFYVVYGLAPRGPLDLLALPSKVRP 3691
            LLRCLVGD P  WDL LP AEFA+N++VNRSTG SPF VV+G +PR P+DL+ALP   R 
Sbjct: 1169 LLRCLVGDKPGNWDLLLPVAEFAYNNSVNRSTGKSPFEVVHGFSPRSPVDLVALPVAART 1228

Query: 3692 HATADDFIGHLQQVHQQTHSQLVTTTEKYKADADRKRRAVDFEVGDFVWAILTKDRFPAR 3871
              +A  F  H++Q+H     Q+   T+ YK  A+  RR  +F  GDFV   +  +RFP  
Sbjct: 1229 SDSATSFAEHIRQLHDDVRRQISMHTDTYKLAANAHRRQQEFREGDFVMVRVCPERFPKH 1288

Query: 3872 EYSKLASKKIGPVEIVEKINSNAYRLLLPSHIHTSDVFNVKHLVPFVG 4015
             + KL ++ +GP  I++K+ SNAY + LP+ +H S +FNV  L P+ G
Sbjct: 1289 SFKKLHARSMGPYRIIKKLGSNAYLIELPADMHISPIFNVSDLSPYRG 1336



 Score = 97.1 bits (240), Expect = 7e-17
 Identities = 51/173 (29%), Positives = 90/173 (52%), Gaps = 2/173 (1%)
 Frame = +2

Query: 29  PTFNGSLKPEELIDWLSQVDEILDFKEVPDDRRVSLVTMRLTGRAQAWWQQLKVSRVRHG 208
           PTF+G   P   +DW+  +++   + ++ D  ++ +  M L G A+ +W  ++    + G
Sbjct: 190 PTFDGRGDPTMFLDWVQAMEDYFAWYDLTDAHKLRIGKMTLQGAARQYWNSVEEQLYQFG 249

Query: 209 KPKITSWDKFKKHIRSAFLPYNFDRELYQRFQNLRQGSRSVDDYSNEFYEFLARVDVNDS 388
           +P +T WD+ K  +R  +LP  +  +LY +   L QGS  V D+   F E   R  + + 
Sbjct: 250 QPPVTLWDEMKLKLREQYLPTFYRHQLYDQLWTLSQGSLPVTDFHARFIEHKIRAGIREE 309

Query: 389 PTQLVSRYIGGLRLQLQDVLNMFDPLTVAEAHQRASQAEK--QAARRTTANLR 541
           P   +SR+I GLR  ++  +  F P T+ +A+  A +AE   +  RR T + R
Sbjct: 310 PDITMSRFIHGLRDDVKREVRRFRPHTLEDAYCHALEAETFLRPQRRYTGHSR 362


>gb|AAK51582.1|AC022352_18 Putative retroelement [Oryza sativa Japonica Group]
            gi|31431012|gb|AAP52850.1| retrotransposon protein,
            putative, Ty3-gypsy subclass [Oryza sativa Japonica
            Group]
          Length = 2447

 Score =  973 bits (2515), Expect = 0.0
 Identities = 469/856 (54%), Positives = 610/856 (71%), Gaps = 5/856 (0%)
 Frame = +2

Query: 1463 FADVFPESLPSTLPPLRDIQHHIDLVAGAALPNRPHYRMSPKEHEELRRQVEELLARGHI 1642
            ++DVFP+ +P  LPP+R I+H IDL+ GA+LPNR  YR +P+E +E++RQV ELL +G++
Sbjct: 688  YSDVFPKEVPPGLPPVRGIEHQIDLIPGASLPNRAPYRTNPEETKEIQRQVHELLDKGYV 747

Query: 1643 RESLSPCAVPALLTPKKDGTWRMCVDSRAINKITVRYRFPIPRLDDLLDQLGGACVFSKL 1822
            RESLSPCAVP +L PKKDG+WRMCVD RAIN IT+RYR PIPRLDD+LD+L G+ VFSK+
Sbjct: 748  RESLSPCAVPVILVPKKDGSWRMCVDCRAINNITIRYRHPIPRLDDMLDELSGSIVFSKV 807

Query: 1823 DLKSGYHQIRIRTGDEWKTAFKTREGLYEWLVMPFGLSNAPSTFMRVMNQALRPFIGKFV 2002
            DL+SGYHQIR++ GDEWKTAFKT+ GLYEWLVMPFGL+NAPSTFMR+MN+ LRPFIGKFV
Sbjct: 808  DLRSGYHQIRMKLGDEWKTAFKTKFGLYEWLVMPFGLTNAPSTFMRLMNEVLRPFIGKFV 867

Query: 2003 VVYFDDILIYSTDPILHIQHLREVLLVLRRDQFYAAPAKCAFLTTSIQFLGYVVSRDGLM 2182
            VVYFDDILIYS     H  HLR V   LR  + +    KC F T  + FLGYVV+  G+ 
Sbjct: 868  VVYFDDILIYSKSMGEHFNHLRAVFNALRDARLFGNLEKCTFCTDRVSFLGYVVTPQGIE 927

Query: 2183 VDPAKVDAVSNWPIPSSITEVRSFHGLASFYRRFIPHFSGIMAPLTD-CMKGPKFQWTAE 2359
            VD AKV+A+ +WP P ++++VRSF GLA FYRRF+  FS I APL     KG  F W   
Sbjct: 928  VDQAKVEAIQSWPTPKTVSQVRSFLGLAGFYRRFVQDFSTIAAPLNVLTKKGVPFTWGTS 987

Query: 2360 AEVAFLEVKRRLISAPILVLPDFSLPFELHCDASHTGVGAVLSQCGRPVAYFSEKLSGAK 2539
             E AF  +K +L  AP+L LPDF+  FEL CDAS  G+G VL Q G+PVAYFSEKLSG  
Sbjct: 988  QENAFHMLKDKLTHAPLLQLPDFNKTFELECDASGIGLGGVLLQEGKPVAYFSEKLSGPV 1047

Query: 2540 LRFSTYDVEFYAIVQAIKHWRHYLFQREFILYTDHDSLKHLGSQDKISHRHASWISYLQQ 2719
            L +STYD E YA+V+ ++ W+HYL+ +EF++++DH+SLKH+ SQ K++ RHA W+ +++ 
Sbjct: 1048 LNYSTYDKELYALVRTLETWQHYLWPKEFVIHSDHESLKHIRSQGKLNRRHAKWVEFIES 1107

Query: 2720 FTFVIKHKAGVSNRVADALSRRHGLLMELRVHVPGFDSFMDLYVDDPYFSHVLTQIQQGE 2899
            F +VIKHK G  N +ADALSRR+ LL +L   + G ++  D Y  D  F+ VL   + G 
Sbjct: 1108 FPYVIKHKKGKENIIADALSRRYTLLTQLDYKIFGLETIKDQYAHDADFNDVLLHCKDGR 1167

Query: 2900 P-TAFLLEDGFIFRGTQLCIPACSLRLKIIQELHN---EGHVGRDRTLQLLAASYFWPSM 3067
                F++ DGF+FR  +LCIPA S+RL ++QE H     GH G  +T  +LA+ +FWP M
Sbjct: 1168 TWNKFVINDGFVFRANKLCIPASSVRLLLLQEAHGGGLMGHFGAKKTHDILASHFFWPQM 1227

Query: 3068 RREVGKFVERCRVCQLAKGAATNAGLYMPLPIPTQPWSDVSMDFVLGLPRTQRGNDSLYV 3247
            RR+VG+FV RC  CQ AK      GLYMPLP+PT PW D+SMDFVLGLPRT+RG DS++V
Sbjct: 1228 RRDVGRFVARCATCQKAKSRLHPHGLYMPLPVPTVPWEDISMDFVLGLPRTKRGRDSIFV 1287

Query: 3248 VVDRFSKMVHFIPCKKTSDAVSVAQLYFRDVYRLHGLPASIVSDRDTRFVSHFWRSLWRT 3427
            VVDRFSKM HFIPC KT DA  +A L+FR++ RLHG+P +IVSDRDT+F+SHFWR+LW  
Sbjct: 1288 VVDRFSKMAHFIPCHKTDDASHIADLFFREIVRLHGVPNTIVSDRDTKFLSHFWRTLWAK 1347

Query: 3428 VNTQLNFSSAYHPQTDGQTEVVNRSLGNLLRCLVGDHPKAWDLKLPQAEFAHNHAVNRST 3607
            + T+L FS+  HPQTDGQTEVVNR+L  +LR ++  + K W+  LP  EFA+N +++ +T
Sbjct: 1348 LGTKLLFSTTCHPQTDGQTEVVNRTLSTMLRAVLKKNIKMWEECLPHIEFAYNRSLHSTT 1407

Query: 3608 GFSPFYVVYGLAPRGPLDLLALPSKVRPHATADDFIGHLQQVHQQTHSQLVTTTEKYKAD 3787
               PF +VYGL PR P+DL+ LPS  + +  A      + ++H+ T   +     KYK  
Sbjct: 1408 KMCPFQIVYGLLPRAPIDLMPLPSSEKLNFDAKQRAELMLKLHETTKENIERMNAKYKFA 1467

Query: 3788 ADRKRRAVDFEVGDFVWAILTKDRFPAREYSKLASKKIGPVEIVEKINSNAYRLLLPSHI 3967
             D+ RR + FE GD VW  L K+RFP    SKL  +  GP +++ KIN NAY++ LP+  
Sbjct: 1468 GDKGRRELTFEPGDLVWLHLRKERFPDLRKSKLMPRADGPFKVLAKINENAYKIDLPADF 1527

Query: 3968 HTSDVFNVKHLVPFVG 4015
              S  FNV  L P++G
Sbjct: 1528 GVSPTFNVADLKPYLG 1543



 Score =  503 bits (1295), Expect = e-139
 Identities = 291/762 (38%), Positives = 424/762 (55%), Gaps = 41/762 (5%)
 Frame = +2

Query: 1838 YHQIRIRTGDEWKT--AFKTREGLYEWLVMPFGLSNAPSTFMRVMNQALRPFIGKFVVVY 2011
            +H+     GD+  T  +     GLYE+ VM FGL+NAP+ FM +MN+    ++ KFVVV+
Sbjct: 1603 HHKFAATIGDDRATNPSGFASYGLYEFTVMSFGLTNAPAFFMNLMNKVFMEYLDKFVVVF 1662

Query: 2012 FDDILIYSTDPILHIQHLREVLLVLRRDQFYAAPAKCAFLTTSIQFLGYVVSRDGLMVDP 2191
             DDIL+YS     H  HLR VL  LR  Q YA  +KC F  + ++FLG+V+S  G+ VDP
Sbjct: 1663 IDDILVYSQSEEDHQHHLRLVLGKLREHQLYAKLSKCEFWLSEVKFLGHVISAKGVAVDP 1722

Query: 2192 AKVDAVSNWPIPSSITEVRSFHGLASFYRRFIPHFSGIMAPLTDCMKGP-KFQWTAEAEV 2368
              V AV++W  P ++T++RSF GLA +YRRFI +FS I  P+T  +K   KF W+ + E 
Sbjct: 1723 ETVTAVTDWKQPKTVTQIRSFLGLAGYYRRFIENFSKIARPMTQLLKKEEKFVWSPQCEK 1782

Query: 2369 AFLEVKRRLISAPILVLPDFSLPFELHCDASHTGVGAVLSQCGRPVAYFSEKLSGAKLRF 2548
            AF  +K +L+S+P+L+LPD    F ++CDAS  G+G VL Q G  VAY S +L   +  +
Sbjct: 1783 AFQTLKEKLVSSPVLILPDTRKDFMVYCDASPQGLGCVLMQEGHVVAYASRQLWPHEGNY 1842

Query: 2549 STYDVEFYAIVQAIKHWRHYLFQREFILYTDHDSLKHLGSQDKISHRHASWISYLQQFTF 2728
             T+D+E  A+V A+K WRHYL      +YTDH SLK++ +Q  ++ R   W+  ++ +  
Sbjct: 1843 PTHDLELAAVVHALKIWRHYLIGNRCEIYTDHKSLKYIFTQSDLNLRQRRWLELIKDYDV 1902

Query: 2729 VIKHKAGVSNRVADALSRR----------------------------HGLLMELRVHVPG 2824
             I +  G +N VADALSR+                             G L  L      
Sbjct: 1903 GIHYHPGKANVVADALSRKSHCNTLGVRGIPPELNQQMEALNLSIVSRGFLATLEAKPTL 1962

Query: 2825 FDSFMDLYVDDPYFSHVLTQIQQGEPTAFLLED-GFIFRGTQLCIPAC-SLRLKIIQELH 2998
             D   +   +DP    +L  ++QG+   F+ ++ G ++   ++C+P    L+  I+QE H
Sbjct: 1963 LDQIREAQKNDPDMRGLLKNMKQGKAAGFIEDEHGTLWNRNRVCVPDVRELKQLILQEAH 2022

Query: 2999 NEG---HVGRDRTLQLLAASYFWPSMRREVGKFVERCRVCQLAKGAATN-AGLYMPLPIP 3166
                  H G  +    L   Y+W SM+RE+ +FV  C VCQ  K      AGL  PL +P
Sbjct: 2023 ESPYSIHPGSTKMYLDLKEKYWWVSMKREIAEFVALCDVCQRVKAEHQRPAGLLQPLQVP 2082

Query: 3167 TQPWSDVSMDFVLGLPRTQRGNDSLYVVVDRFSKMVHFIPCKKTSDAVSVAQLYFRDVYR 3346
               W ++ MDF+ GLP+TQ G DS++VVVDR +K+  FIP K T     +A+LYF  +  
Sbjct: 2083 EWKWDEIGMDFITGLPKTQGGYDSIWVVVDRLTKVARFIPVKTTYGGNKLAELYFARIVS 2142

Query: 3347 LHGLPASIVSDRDTRFVSHFWRSLWRTVNTQLNFSSAYHPQTDGQTEVVNRSLGNLLRCL 3526
            LHG+P  IVSDR+++F SHFW+ L   + T+LNFS+AYHPQTDGQTE +N+ L ++L   
Sbjct: 2143 LHGVPKKIVSDRESQFTSHFWKKLQEELGTRLNFSTAYHPQTDGQTERLNQILEDMLHAC 2202

Query: 3527 VGDHPKAWDLKLPQAEFAHNHAVNRSTGFSPFYVVYGLAPRGPLDLLALPSKV-RPHATA 3703
            V D  K WD  LP AEF++N++   S   +P+  +YG   R PL    L  +V       
Sbjct: 2203 VLDFGKTWDKSLPYAEFSYNNSYQASIQMAPYEALYGRKCRTPL----LWDQVGESQVFG 2258

Query: 3704 DDFIGHLQQVHQQTHSQLVTTTEKYKADADRKRRAVDFEVGDFVWAILTKDRFPAR--EY 3877
             D +   +   +     L     + K+ AD +RR ++F V DFV+  +T  R   R    
Sbjct: 2259 TDILREAEAKVRTIWDNLKVAQSRQKSYADNRRRNLEFAVDDFVYLRVTPLRGVHRFQTK 2318

Query: 3878 SKLASKKIGPVEIVEKINSNAYRLLLPSHI-HTSDVFNVKHL 4000
             KLA + +GP  I+ +    AY+L LP+ + +  DVF+V  L
Sbjct: 2319 GKLAPRFVGPFRIIARRGEVAYQLELPASLGNVHDVFHVSQL 2360



 Score =  215 bits (547), Expect = 2e-52
 Identities = 135/452 (29%), Positives = 201/452 (44%), Gaps = 32/452 (7%)
 Frame = +2

Query: 17   RVEIPTFNGSLKPEELIDWLSQVDEILDFKEVPDDRRVSLVTMRLTGRAQAWWQQLKVSR 196
            + +IP F+G   P+  + W   VD+     E P+  RV   T   T  A  WW       
Sbjct: 154  KFKIPPFDGKYDPDAYLSWEIAVDQKFACHEFPESTRVRAATSEFTDFASVWW------- 206

Query: 197  VRHGKPKITS----WDKFKKHIRSAFLPYNFDRELYQRFQNLRQGSRSVDDYSNEFYEFL 364
            + HGK    +    WD  K+ +R+ F+P  + R+L  R Q LRQG++SV++Y  E    L
Sbjct: 207  IEHGKKNPNNMPQTWDALKRVMRARFVPSYYARDLLNRLQQLRQGAKSVEEYYQELQMGL 266

Query: 365  ARVDVNDSPTQLVSRYIGGLRLQLQDVLNMFDPLTVAEAHQRASQAEKQA-ARRTTANLR 541
             R ++ ++    ++R++GGL  ++ D+++  D   +      A +AE++   RR +A   
Sbjct: 267  LRCNLEETEDAAMARFLGGLNREIYDIVDYKDYTNMTRLFHLACKAEREVQGRRASAKAN 326

Query: 542  LXXXXXXXXXXXXXXXXXXXXAQQSAP----------------------PRGYSNPSQGR 655
                                 +  S P                      P   S  S GR
Sbjct: 327  FSAGKTSSWQTRTTPPAGRTASPSSTPTTSRAAPPPSSDKSATKAAQPAPSASSMASTGR 386

Query: 656  PGFRGCFNCGDLSHRQADCPKPPT---GSRGLFTDA--VESEPLPLFDTPIXXXXXXXXX 820
                 C  C    H Q DCP        + G ++ A   + + L L              
Sbjct: 387  MRDVQCHRCKGFGHVQRDCPSKRVLVVKNDGEYSSASDFDDDTLALLAADHADNEPPEEH 446

Query: 821  XXXXSGDVGPMLMLRRTFLSPRALETEWLRNNLFQSTCTIGGKVCTFIIDAGSCENVISE 1000
                  D    L+++R   +      +  R+ LFQ+ C +  + C  IID GSC N+ S 
Sbjct: 447  IGAAFADHYESLIVQRVLSAQMEKAEQNQRHTLFQTKCVVKERCCRMIIDGGSCNNLASS 506

Query: 1001 VAVSKLNLTTESHPKPYRLSWLSQGTDVMVSKRVLVNFSIGPTYQDSIYCDVVPMDACHL 1180
              V KL L+T+ HP PY + WL+      V+K V +NF+IG  Y D + CDVVPM AC++
Sbjct: 507  EMVEKLALSTKPHPHPYYIQWLNNSGKAKVTKLVHINFAIG-NYHDVVECDVVPMQACNI 565

Query: 1181 LLGRPWQYDNTVQHDGRCNTYSFMFRGKKIVL 1276
            LLGRPWQ+D    H GR N YSF++  KKIVL
Sbjct: 566  LLGRPWQFDRDSMHHGRSNQYSFLYHDKKIVL 597


>gb|AAM94350.1| gag-pol polyprotein [Zea mays]
          Length = 1618

 Score =  971 bits (2509), Expect = 0.0
 Identities = 465/856 (54%), Positives = 612/856 (71%), Gaps = 5/856 (0%)
 Frame = +2

Query: 1463 FADVFPESLPSTLPPLRDIQHHIDLVAGAALPNRPHYRMSPKEHEELRRQVEELLARGHI 1642
            ++DVFP  +P  LPP+R I+H IDL+ GA+LPNR  YR +P+E +E++RQV+ELL +G++
Sbjct: 691  YSDVFPSEIPEGLPPIRGIEHQIDLIPGASLPNRAPYRTNPEETKEIQRQVQELLDKGYV 750

Query: 1643 RESLSPCAVPALLTPKKDGTWRMCVDSRAINKITVRYRFPIPRLDDLLDQLGGACVFSKL 1822
            RESLSPCAVP +L PKKDGTWRMCVD RAIN IT+RYR PIPRLDD+LD+L GA VFSK+
Sbjct: 751  RESLSPCAVPVILVPKKDGTWRMCVDCRAINNITIRYRHPIPRLDDMLDELSGAIVFSKV 810

Query: 1823 DLKSGYHQIRIRTGDEWKTAFKTREGLYEWLVMPFGLSNAPSTFMRVMNQALRPFIGKFV 2002
            DL+SGYHQIR++ GDEWKTAFKT+ GLYEWLVMPFGL+NAPSTFMR+MN+ LR FIGKFV
Sbjct: 811  DLRSGYHQIRMKLGDEWKTAFKTKFGLYEWLVMPFGLTNAPSTFMRLMNEVLRAFIGKFV 870

Query: 2003 VVYFDDILIYSTDPILHIQHLREVLLVLRRDQFYAAPAKCAFLTTSIQFLGYVVSRDGLM 2182
            VVYFDDILIYS     H+ H+R V   LR  + +    KC F T  + FLGYVV+  G+ 
Sbjct: 871  VVYFDDILIYSKSMDEHVDHMRAVFNALRDARLFGNLEKCTFCTDRVSFLGYVVTPQGIE 930

Query: 2183 VDPAKVDAVSNWPIPSSITEVRSFHGLASFYRRFIPHFSGIMAPLTD-CMKGPKFQWTAE 2359
            VD AKV+A+  WP+P +IT+VRSF GLA FYRRF+  FS I APL +   KG  F W   
Sbjct: 931  VDQAKVEAIHGWPMPKTITQVRSFLGLAGFYRRFVKDFSTIAAPLNELTKKGVHFSWGKV 990

Query: 2360 AEVAFLEVKRRLISAPILVLPDFSLPFELHCDASHTGVGAVLSQCGRPVAYFSEKLSGAK 2539
             E AF  +K +L  AP+L LPDF+  FEL CDAS  G+G VL Q G+PVAYFSEKLSG+ 
Sbjct: 991  QEHAFNVLKDKLTHAPLLQLPDFNKTFELECDASGIGLGGVLLQEGKPVAYFSEKLSGSV 1050

Query: 2540 LRFSTYDVEFYAIVQAIKHWRHYLFQREFILYTDHDSLKHLGSQDKISHRHASWISYLQQ 2719
            L +STYD E YA+V+ ++ W+HYL+ +EF++++DH+SLKH+ SQ K++ RHA W+ +++ 
Sbjct: 1051 LNYSTYDKELYALVRTLETWQHYLWPKEFVIHSDHESLKHIRSQGKLNRRHAKWVEFIES 1110

Query: 2720 FTFVIKHKAGVSNRVADALSRRHGLLMELRVHVPGFDSFMDLYVDDPYFSHVLTQIQQGE 2899
            F +VIKHK G  N +ADALSRR+ LL +L   + G ++  D YV D  F  VL   + G+
Sbjct: 1111 FPYVIKHKKGKENIIADALSRRYTLLNQLDYKIFGLETIKDQYVHDADFKDVLLHCKDGK 1170

Query: 2900 P-TAFLLEDGFIFRGTQLCIPACSLRLKIIQELHN---EGHVGRDRTLQLLAASYFWPSM 3067
                +++ DGF+FR  +LCIPA S+RL ++QE H     GH G  +T  +LA  +FWP M
Sbjct: 1171 GWNKYIVSDGFVFRANKLCIPASSVRLLLLQEAHGGGLMGHFGAKKTEDILAGHFFWPKM 1230

Query: 3068 RREVGKFVERCRVCQLAKGAATNAGLYMPLPIPTQPWSDVSMDFVLGLPRTQRGNDSLYV 3247
            RR+V + V RC  CQ AK      GLY+PLP+P+ PW D+SMDFVLGLPRT++G DS++V
Sbjct: 1231 RRDVVRLVARCTTCQKAKSRLNPHGLYLPLPVPSAPWEDISMDFVLGLPRTRKGRDSVFV 1290

Query: 3248 VVDRFSKMVHFIPCKKTSDAVSVAQLYFRDVYRLHGLPASIVSDRDTRFVSHFWRSLWRT 3427
            VVDRFSKM HFIPC KT DA  +A L+FR++ RLHG+P +IVSDRD +F+SHFWR+LW  
Sbjct: 1291 VVDRFSKMAHFIPCHKTDDATHIADLFFREIVRLHGVPNTIVSDRDAKFLSHFWRTLWAK 1350

Query: 3428 VNTQLNFSSAYHPQTDGQTEVVNRSLGNLLRCLVGDHPKAWDLKLPQAEFAHNHAVNRST 3607
            + T+L FS+  HPQTDGQTEVVNR+L  +LR ++  + K W+  LP  EFA+N +++ +T
Sbjct: 1351 LGTKLLFSTTCHPQTDGQTEVVNRTLSTMLRAVLKKNIKMWEDCLPHIEFAYNRSLHSTT 1410

Query: 3608 GFSPFYVVYGLAPRGPLDLLALPSKVRPHATADDFIGHLQQVHQQTHSQLVTTTEKYKAD 3787
               PF +VYGL PR P+DL+ LPS  + +  A      + ++H+ T   +     +YK  
Sbjct: 1411 KMCPFQIVYGLLPRAPIDLMPLPSSEKLNFDATRRAELMLKLHETTKENIERMNARYKFA 1470

Query: 3788 ADRKRRAVDFEVGDFVWAILTKDRFPAREYSKLASKKIGPVEIVEKINSNAYRLLLPSHI 3967
            +D+ R+ ++FE GD VW  L K+RFP    SKL  +  GP +++EKIN NAYRL LP+  
Sbjct: 1471 SDKGRKEINFEPGDLVWLHLRKERFPELRKSKLLPRADGPFKVLEKINDNAYRLDLPADF 1530

Query: 3968 HTSDVFNVKHLVPFVG 4015
              S  FN+  L P++G
Sbjct: 1531 GVSPTFNIADLKPYLG 1546



 Score =  213 bits (541), Expect = 8e-52
 Identities = 136/462 (29%), Positives = 205/462 (44%), Gaps = 41/462 (8%)
 Frame = +2

Query: 17   RVEIPTFNGSLKPEELIDWLSQVDEILDFKEVPDDRRVSLVTMRLTGRAQAWWQQLKVSR 196
            + +IP F+G   P+  I W   VD+     E P++ RV   T   T  A  WW       
Sbjct: 148  KFKIPPFDGKYDPDAYITWEIAVDQKFACHEFPENARVRAATSEFTEFASVWW------- 200

Query: 197  VRHGKPKITS----WDKFKKHIRSAFLPYNFDRELYQRFQNLRQGSRSVDDYSNEFYEFL 364
            + HGK    +    WD  K+ +R+ F+P  + R++  + Q LRQG++SV++Y  E    +
Sbjct: 201  IEHGKKNPNNMPQTWDALKRVMRARFVPSYYARDMLNKLQQLRQGTKSVEEYYQELQMGM 260

Query: 365  ARVDVNDSPTQLVSRYIGGLRLQLQDVLNMFDPLTVAEAHQRASQAEKQA-ARRTTANLR 541
             R ++ +     ++R++GGL  ++QD+L   D   V      A +AE++   RR +A   
Sbjct: 261  LRCNIEEGEESAMARFLGGLNREIQDILAYKDYANVTRLFHLACKAEREVQGRRASARSN 320

Query: 542  LXXXXXXXXXXXXXXXXXXXX-------AQQSAPPRGYSNP------------------- 643
            +                           ++ + PP     P                   
Sbjct: 321  VSAGKSTPWQQRTTTSMTGRTLAPTPSPSRPAPPPSSSDKPRASSTNSATKSAQKPAGSA 380

Query: 644  ----SQGRPGFRGCFNCGDLSHRQADCPKPPT------GSRGLFTDAVESEPLPLFDTPI 793
                S GR     C+ C    H Q DCP          G     +D  E+    L     
Sbjct: 381  SSVASTGRTRDVLCYRCKGYGHVQRDCPNQRVLVVKDDGGYSSASDLDEATLALLAADDA 440

Query: 794  XXXXXXXXXXXXXSGDVGPMLMLRRTFLSPRALETEWLRNNLFQSTCTIGGKVCTFIIDA 973
                           +    L+++R   +      +  R+ LFQ+ C I  + C  IID 
Sbjct: 441  GTKEPPEEQIGADDAEHYESLIVQRVLSAQMEKAEQNQRHTLFQTKCVIKERSCRLIIDG 500

Query: 974  GSCENVISEVAVSKLNLTTESHPKPYRLSWLSQGTDVMVSKRVLVNFSIGPTYQDSIYCD 1153
            GSC N+ S   V KL LTT+ HP PY + WL+    V V+K V +NF+IG +Y+D + CD
Sbjct: 501  GSCNNLASSDMVEKLALTTKPHPHPYHIQWLNNSGKVKVTKLVRINFAIG-SYRDVVDCD 559

Query: 1154 VVPMDACHLLLGRPWQYDNTVQHDGRCNTYSFMFRGKKIVLV 1279
            VVPMDAC++LLGRPWQ+D+   H GR N YS +   KKI+L+
Sbjct: 560  VVPMDACNILLGRPWQFDSDCMHHGRSNQYSLIHHDKKIILL 601


>gb|ABE60891.1| putative polyprotein [Oryza sativa Japonica Group]
          Length = 1713

 Score =  964 bits (2492), Expect = 0.0
 Identities = 463/856 (54%), Positives = 611/856 (71%), Gaps = 5/856 (0%)
 Frame = +2

Query: 1463 FADVFPESLPSTLPPLRDIQHHIDLVAGAALPNRPHYRMSPKEHEELRRQVEELLARGHI 1642
            + DVFPE  P  LPPLR I+H IDL+ GA LPNRP YR +P+E +E++RQV+ LL +G++
Sbjct: 691  YEDVFPEETPVGLPPLRGIEHQIDLIPGATLPNRPAYRTNPEETKEIQRQVQALLDKGYV 750

Query: 1643 RESLSPCAVPALLTPKKDGTWRMCVDSRAINKITVRYRFPIPRLDDLLDQLGGACVFSKL 1822
            RESLSPCAVP +L PKKDG+WRMCVD RAIN ITVRYR PIPRLDD+LD+L G+ +FSK+
Sbjct: 751  RESLSPCAVPVILVPKKDGSWRMCVDCRAINNITVRYRHPIPRLDDMLDELSGSMIFSKI 810

Query: 1823 DLKSGYHQIRIRTGDEWKTAFKTREGLYEWLVMPFGLSNAPSTFMRVMNQALRPFIGKFV 2002
            DL+SG+HQIR++ GDEWKTAFKT+ GLYEWLVMPFGL+NAPSTFMR+MN  LR FIGKFV
Sbjct: 811  DLRSGFHQIRMKIGDEWKTAFKTKFGLYEWLVMPFGLTNAPSTFMRLMNHVLRAFIGKFV 870

Query: 2003 VVYFDDILIYSTDPILHIQHLREVLLVLRRDQFYAAPAKCAFLTTSIQFLGYVVSRDGLM 2182
            VVYFDDILIYS     H+ H+++VL VLR++Q YA   KC F T  + FLG+VVS  G+ 
Sbjct: 871  VVYFDDILIYSKTLEEHVAHIQQVLDVLRKEQLYANLEKCTFCTDQVVFLGFVVSGLGIQ 930

Query: 2183 VDPAKVDAVSNWPIPSSITEVRSFHGLASFYRRFIPHFSGIMAPLTD-CMKGPKFQWTAE 2359
            VD +KV A+ +WP P ++++V+SF GLA FYRRF+  FS I APL +   KG  FQW   
Sbjct: 931  VDESKVKAIKDWPTPENVSQVKSFRGLAGFYRRFVRGFSTIAAPLNELTKKGVAFQWGEP 990

Query: 2360 AEVAFLEVKRRLISAPILVLPDFSLPFELHCDASHTGVGAVLSQCGRPVAYFSEKLSGAK 2539
             E AF E+K+RL   P+LVLPDF+  FE+ CDAS  G+G VL Q G+PVAYFSEKL GA+
Sbjct: 991  QEKAFQELKKRLSEGPLLVLPDFTKTFEVECDASGIGIGGVLMQNGQPVAYFSEKLGGAQ 1050

Query: 2540 LRFSTYDVEFYAIVQAIKHWRHYLFQREFILYTDHDSLKHLGSQDKISHRHASWISYLQQ 2719
            L +S YD E YA+V+A++ W+HYL+ +EF++++DH++LK+L  Q K++ RHA W+ +++ 
Sbjct: 1051 LNYSVYDKELYALVRALETWQHYLWPKEFVIHSDHEALKYLKGQAKLNRRHAKWVEFIET 1110

Query: 2720 FTFVIKHKAGVSNRVADALSRRHGLLMELRVHVPGFDSFMDLYVDDPYFSHVLTQIQQGE 2899
            F +V+K+K G  N VADALSR++ LL +L V V G +S  +LY  D  FS    +   G+
Sbjct: 1111 FPYVVKYKKGKENIVADALSRKNVLLNQLEVKVTGIESIKELYSADLDFSEPYAKCTAGK 1170

Query: 2900 P-TAFLLEDGFIFRGTQLCIPACSLRLKIIQELHN---EGHVGRDRTLQLLAASYFWPSM 3067
                + + DGF+FR  +LC+P CS+RL ++QE H     GH G  +T  +LA  ++WP M
Sbjct: 1171 GWEKYHIHDGFLFRANKLCVPHCSVRLLLLQETHAGGLMGHFGWRKTYDMLADHFYWPKM 1230

Query: 3068 RREVGKFVERCRVCQLAKGAATNAGLYMPLPIPTQPWSDVSMDFVLGLPRTQRGNDSLYV 3247
            RR+V + V+RC  C  AK      GLY PLP+P+ PW D+SMDFVLGLPRT+RG DS++V
Sbjct: 1231 RRDVQRLVQRCVTCHKAKSKLNPHGLYTPLPVPSAPWEDISMDFVLGLPRTKRGRDSIFV 1290

Query: 3248 VVDRFSKMVHFIPCKKTSDAVSVAQLYFRDVYRLHGLPASIVSDRDTRFVSHFWRSLWRT 3427
            VVDRFSKM HFIPC K+ DA  +A L+F ++ RLHG+P +IVSDRDT+F+S+FW++LW  
Sbjct: 1291 VVDRFSKMAHFIPCHKSDDASHIASLFFSEIVRLHGMPKTIVSDRDTKFLSYFWKTLWAK 1350

Query: 3428 VNTQLNFSSAYHPQTDGQTEVVNRSLGNLLRCLVGDHPKAWDLKLPQAEFAHNHAVNRST 3607
            + T+L FS+  HPQTDGQTEVVNR+L  LLR L+  + K W+  LP  EFA+N AV+ +T
Sbjct: 1351 LGTRLLFSTTCHPQTDGQTEVVNRTLSMLLRALIKKNLKEWEECLPHVEFAYNRAVHSTT 1410

Query: 3608 GFSPFYVVYGLAPRGPLDLLALPSKVRPHATADDFIGHLQQVHQQTHSQLVTTTEKYKAD 3787
               PF VVYG  P  P+DLL LP + R    A     +++++H++T   +   ++ Y A 
Sbjct: 1411 NMCPFEVVYGFKPLSPIDLLPLPLQERSDMEASKRATYVKKIHEKTKEAIEKRSKYYAAW 1470

Query: 3788 ADRKRRAVDFEVGDFVWAILTKDRFPAREYSKLASKKIGPVEIVEKINSNAYRLLLPSHI 3967
            A++ R+ V FE GD VW  L KDRFP +  SKL  +  GP  ++ KIN NAY++ LP   
Sbjct: 1471 ANKNRKKVTFEPGDLVWVHLRKDRFPQKRKSKLMPRGDGPFRVLSKINDNAYKIELPEDY 1530

Query: 3968 HTSDVFNVKHLVPFVG 4015
              S  FNV  L PF G
Sbjct: 1531 GVSSTFNVADLTPFFG 1546



 Score =  204 bits (519), Expect = 3e-49
 Identities = 127/453 (28%), Positives = 201/453 (44%), Gaps = 36/453 (7%)
 Frame = +2

Query: 26   IPTFNGSLKPEELIDWLSQVDEILDFKEVPDDRRVSLVTMRLTGRAQAWWQQLKVSRVRH 205
            +P F G   PE  + W  +VD+I       + ++V++  +   G A  WW+Q+   R   
Sbjct: 144  MPKFEGGSDPEVYLTWELKVDKIFRLHNYSERKKVAMAALEFDGYALIWWEQMLNEREEA 203

Query: 206  GKPKITSWDKFKKHIRSAFLPYNFDRELYQRFQNLRQGSRSVDDYSNEFYEFLARVDVND 385
            G+  + SW + K+ +R+ F+P ++ R+L+ + QNL+QGS SVD+Y  E  + + R +V +
Sbjct: 204  GQGDVRSWAEMKREMRARFVPKHYRRDLFDKLQNLKQGSLSVDEYYKEMEKAMIRANVYE 263

Query: 386  SPTQLVSRYIGGLRLQLQDVLNMFDPLTVAEAHQRASQAEKQAARRTTAN---------- 535
               Q ++R++ GL   +Q ++       + E   +AS+AE+Q  +   +N          
Sbjct: 264  DEEQSIARFMSGLHRNIQRIVEFQQYRNLIELVHQASKAERQLQQDMKSNRGVSFSTKNA 323

Query: 536  -----------------------LRLXXXXXXXXXXXXXXXXXXXXAQQSAPPRGYSNPS 646
                                    R                     A  S+   G S  S
Sbjct: 324  ASGSKFTSRGSGNRGAFSSSSGGARSSNYGTSSGKDLAAPNERKNAANTSSTSVGSSTKS 383

Query: 647  QGRPGFRGCFNCGDLSHRQADCPKPPT---GSRGLFTDAVESEPLPLFDTPIXXXXXXXX 817
             G      CF CG   H   +CP   T     +G +    E E     +           
Sbjct: 384  SGIQ----CFKCGGRGHVARECPNNRTIVVNDQGEYESTSEEEQEDSEEE-------NNL 432

Query: 818  XXXXXSGDVGPMLMLRRTFLSPRALETEWLRNNLFQSTCTIGGKVCTFIIDAGSCENVIS 997
                   + G  L++ +      +      R+NLFQ+   +  KV   IID GSC N+ S
Sbjct: 433  EKDICEFESGAALVVTQILSVQMSDAENGQRHNLFQTRAKVQDKVVKVIIDGGSCHNLAS 492

Query: 998  EVAVSKLNLTTESHPKPYRLSWLSQGTDVMVSKRVLVNFSIGPTYQDSIYCDVVPMDACH 1177
            +  V KL L    HP PY + WL+    + +++RV V F IG  Y D++ CDV PM  CH
Sbjct: 493  KEMVEKLGLKLLKHPHPYHVQWLNNSGSIKIAQRVKVPFKIGE-YIDTMECDVAPMTVCH 551

Query: 1178 LLLGRPWQYDNTVQHDGRCNTYSFMFRGKKIVL 1276
            +LLGRPWQYD +  H GR N Y+  ++GK+++L
Sbjct: 552  MLLGRPWQYDRSSLHCGRTNQYTIKWKGKELIL 584


>gb|ABI96971.1| putative gag-pol polyprotein [Triticum monococcum subsp.
            aegilopoides]
          Length = 1704

 Score =  961 bits (2484), Expect = 0.0
 Identities = 462/856 (53%), Positives = 607/856 (70%), Gaps = 5/856 (0%)
 Frame = +2

Query: 1463 FADVFPESLPSTLPPLRDIQHHIDLVAGAALPNRPHYRMSPKEHEELRRQVEELLARGHI 1642
            F DVFP+ +P  LPP+R I+H IDL+ GA+LPNR  YR +P+E +E+ RQV+ELL +G+I
Sbjct: 732  FTDVFPQDVPPGLPPIRGIEHQIDLIPGASLPNRAPYRTNPEETKEIMRQVQELLDKGYI 791

Query: 1643 RESLSPCAVPALLTPKKDGTWRMCVDSRAINKITVRYRFPIPRLDDLLDQLGGACVFSKL 1822
            RESLSPCAVP +L PKKDGT RMCVD R IN IT+RYR PIPRLDD+LD+L G+ +FSK+
Sbjct: 792  RESLSPCAVPIILVPKKDGTSRMCVDCRGINNITIRYRHPIPRLDDMLDELSGSTIFSKV 851

Query: 1823 DLKSGYHQIRIRTGDEWKTAFKTREGLYEWLVMPFGLSNAPSTFMRVMNQALRPFIGKFV 2002
            DL+SGYHQIR++ GDEWKT FKT+ GLYEWLVMPFGL+NAPSTFMR+MN+ LR FIG+FV
Sbjct: 852  DLRSGYHQIRMKLGDEWKTTFKTKFGLYEWLVMPFGLTNAPSTFMRLMNEVLRAFIGRFV 911

Query: 2003 VVYFDDILIYSTDPILHIQHLREVLLVLRRDQFYAAPAKCAFLTTSIQFLGYVVSRDGLM 2182
            VVYFDDILIYS     H++HLR V + LR  + +    KC F T  + FLGYVV+  G+ 
Sbjct: 912  VVYFDDILIYSKSLEEHLEHLRAVFIALRDARLFGNLGKCTFCTDRVSFLGYVVTPQGIE 971

Query: 2183 VDPAKVDAVSNWPIPSSITEVRSFHGLASFYRRFIPHFSGIMAPLTD-CMKGPKFQWTAE 2359
            VD AK++A+ +WP P ++T+VRSF GLA FYRRF+  FS I APL +   K   F W   
Sbjct: 972  VDKAKIEAIESWPHPKTVTQVRSFLGLAGFYRRFVRDFSTIAAPLNEVTKKDVPFVWGTA 1031

Query: 2360 AEVAFLEVKRRLISAPILVLPDFSLPFELHCDASHTGVGAVLSQCGRPVAYFSEKLSGAK 2539
             E AF  +K +L  AP+L LP+F+  FEL CDAS  G+G VL Q G+PVAYFSEK SG  
Sbjct: 1032 QEEAFTVLKDKLTYAPLLQLPNFNKTFELECDASGIGLGGVLLQDGKPVAYFSEKFSGPS 1091

Query: 2540 LRFSTYDVEFYAIVQAIKHWRHYLFQREFILYTDHDSLKHLGSQDKISHRHASWISYLQQ 2719
            L +STYD E YA+V+ ++ W+HYL+ +EF++++DH+SLKH+ SQ K++ RHA W+ +++ 
Sbjct: 1092 LNYSTYDKELYALVRTLETWQHYLWPKEFVIHSDHESLKHIKSQAKLNRRHAKWVEFIET 1151

Query: 2720 FTFVIKHKAGVSNRVADALSRRHGLLMELRVHVPGFDSFMDLYVDDPYFSHVLTQIQQGE 2899
            F +VIKHK G  N +ADALSRR+ +L +L   + G ++  D YV D  F  VL   ++G 
Sbjct: 1152 FPYVIKHKKGKENVIADALSRRYTMLSQLDFKIFGLETIKDQYVHDAEFKDVLQNCKEGR 1211

Query: 2900 P-TAFLLEDGFIFRGTQLCIPACSLRLKIIQELHN---EGHVGRDRTLQLLAASYFWPSM 3067
                F+L DGF+FR  +LCIPA S+RL ++QE H     GH G  +T  +LA  +FWP M
Sbjct: 1212 TWNKFVLNDGFVFRANKLCIPASSVRLLLLQEAHGGGLMGHFGVKKTEDILATHFFWPKM 1271

Query: 3068 RREVGKFVERCRVCQLAKGAATNAGLYMPLPIPTQPWSDVSMDFVLGLPRTQRGNDSLYV 3247
            RR+V +FV RC  CQ AK      GLYMPLP+P+ PW D+SMDFVLGLPRT++G DS++V
Sbjct: 1272 RRDVERFVARCTTCQRAKSRLNPHGLYMPLPVPSVPWEDISMDFVLGLPRTKKGRDSIFV 1331

Query: 3248 VVDRFSKMVHFIPCKKTSDAVSVAQLYFRDVYRLHGLPASIVSDRDTRFVSHFWRSLWRT 3427
            VVDRFSKM HFIPC K+ DAV+VA L+FR++ RLHG+P +IVSDRDT+F+SHFWR LW  
Sbjct: 1332 VVDRFSKMAHFIPCHKSDDAVNVADLFFREIIRLHGVPNTIVSDRDTKFLSHFWRCLWAK 1391

Query: 3428 VNTQLNFSSAYHPQTDGQTEVVNRSLGNLLRCLVGDHPKAWDLKLPQAEFAHNHAVNRST 3607
            +  +L FS+  HPQTDGQTEVVNR+L  +LR ++ ++ K W+  LP  EFA+N +++ +T
Sbjct: 1392 LGNKLLFSTTCHPQTDGQTEVVNRTLSTMLRAVLKNNKKMWEECLPHIEFAYNRSLHSTT 1451

Query: 3608 GFSPFYVVYGLAPRGPLDLLALPSKVRPHATADDFIGHLQQVHQQTHSQLVTTTEKYKAD 3787
               PF +VYG  PR P+DLL LPS  + +  A +    + ++H+ T   +     KYK  
Sbjct: 1452 KMCPFEIVYGFLPRAPIDLLPLPSSEKVNFDAKERSELILKIHELTKENIERMNAKYKLA 1511

Query: 3788 ADRKRRAVDFEVGDFVWAILTKDRFPAREYSKLASKKIGPVEIVEKINSNAYRLLLPSHI 3967
             D+ R+ V F  GD VW  L KDRFP    SKL  +  GP +++EKIN NAY+L LP+  
Sbjct: 1512 RDKGRKHVVFAPGDLVWLHLRKDRFPNLRKSKLMPRADGPFKVLEKINDNAYKLELPADF 1571

Query: 3968 HTSDVFNVKHLVPFVG 4015
              S  FN+  L P++G
Sbjct: 1572 GVSPTFNIADLKPYLG 1587



 Score =  111 bits (278), Expect = 3e-21
 Identities = 56/124 (45%), Positives = 73/124 (58%)
 Frame = +2

Query: 908  RNNLFQSTCTIGGKVCTFIIDAGSCENVISEVAVSKLNLTTESHPKPYRLSWLSQGTDVM 1087
            R+NLF +   +  +    IID GSC N+ S   V KL+L T  HP PY + W +    V 
Sbjct: 504  RHNLFHTKGVVKERSVRVIIDGGSCNNLASMEMVEKLSLITRPHPHPYYIQWFNNSGKVK 563

Query: 1088 VSKRVLVNFSIGPTYQDSIYCDVVPMDACHLLLGRPWQYDNTVQHDGRCNTYSFMFRGKK 1267
            V++ V V+FSI  TY D + CDVVPM AC LLLGRPWQ+D    H  R N Y+ + + K 
Sbjct: 564  VTRTVRVHFSIS-TYADYVDCDVVPMQACSLLLGRPWQFDKNSVHHDRKNLYTLVHKDKN 622

Query: 1268 IVLV 1279
            I L+
Sbjct: 623  ITLL 626



 Score = 80.9 bits (198), Expect = 5e-12
 Identities = 44/171 (25%), Positives = 80/171 (46%), Gaps = 2/171 (1%)
 Frame = +2

Query: 17  RVEIPTFNGSLKPEELIDWLSQVDEILDFKEVPDDRRVSLVTMRLTGRAQAWWQQLKVSR 196
           ++ IP F G   P+  + W  + ++     + P++RRV       T  A  WW +     
Sbjct: 176 KLNIPPFEGRYVPDIYLTWELETEQQFTCLQYPEERRVPAAVCAFTSFACVWWSE----- 230

Query: 197 VRHGK--PKITSWDKFKKHIRSAFLPYNFDRELYQRFQNLRQGSRSVDDYSNEFYEFLAR 370
             H +  P   +W   K  +R+ ++P  +  EL Q+ Q LRQG  SV++Y  E    + R
Sbjct: 231 --HCRLYPIPATWAALKTAMRTRWVPPYYQHELLQKLQRLRQGKNSVEEYYQELQTGMIR 288

Query: 371 VDVNDSPTQLVSRYIGGLRLQLQDVLNMFDPLTVAEAHQRASQAEKQAARR 523
             + +    +++R++GGL  ++Q +L   D   +      A +AE++   R
Sbjct: 289 CGIVEENEAMLARFMGGLNREIQTILEYKDYTNITRLFHLACKAEREVQDR 339


>gb|AAQ56338.1| putative gag-pol polyprotein [Oryza sativa Japonica Group]
          Length = 1619

 Score =  957 bits (2475), Expect = 0.0
 Identities = 463/856 (54%), Positives = 606/856 (70%), Gaps = 5/856 (0%)
 Frame = +2

Query: 1463 FADVFPESLPSTLPPLRDIQHHIDLVAGAALPNRPHYRMSPKEHEELRRQVEELLARGHI 1642
            ++DVFP+ +P  LPP+R I+H IDL+ GA+LPNR  YR +P+E +E++RQV ELL +G++
Sbjct: 667  YSDVFPKEVPPGLPPVRGIEHQIDLIPGASLPNRAPYRTNPEETKEIQRQVHELLDKGYV 726

Query: 1643 RESLSPCAVPALLTPKKDGTWRMCVDSRAINKITVRYRFPIPRLDDLLDQLGGACVFSKL 1822
            RESLSPCAVP +L PKKDG+WRMCVD RAIN IT+RYR PIPRLDD+LD+L G+ VFSK+
Sbjct: 727  RESLSPCAVPVILVPKKDGSWRMCVDCRAINNITIRYRHPIPRLDDMLDELSGSIVFSKV 786

Query: 1823 DLKSGYHQIRIRTGDEWKTAFKTREGLYEWLVMPFGLSNAPSTFMRVMNQALRPFIGKFV 2002
            +L+SGYHQI ++ GDEWKTAFKT+ GLYEWLVMPFGL+NAPSTFMR+MN+ LRPFIGKFV
Sbjct: 787  ELRSGYHQIHMKLGDEWKTAFKTKFGLYEWLVMPFGLTNAPSTFMRLMNEVLRPFIGKFV 846

Query: 2003 VVYFDDILIYSTDPILHIQHLREVLLVLRRDQFYAAPAKCAFLTTSIQFLGYVVSRDGLM 2182
            VVYFDDILIYS     H  HLR V   LR  + +    KC F T  + FLGYVV+  G+ 
Sbjct: 847  VVYFDDILIYSKSMGEHFNHLRAVFNALRDARLFGNLEKCTFCTDRVSFLGYVVTPQGIE 906

Query: 2183 VDPAKVDAVSNWPIPSSITEVRSFHGLASFYRRFIPHFSGIMAPLTD-CMKGPKFQWTAE 2359
            VD AKV+A+ +WP P ++++VRSF GLA FY RF+  FS I APL     KG  F W   
Sbjct: 907  VDQAKVEAIQSWPTPKTVSQVRSFLGLAGFYCRFVQDFSTIAAPLNALTKKGVPFTWGTS 966

Query: 2360 AEVAFLEVKRRLISAPILVLPDFSLPFELHCDASHTGVGAVLSQCGRPVAYFSEKLSGAK 2539
             E AF  +K +L  AP+L LPDF+  FEL CDAS  G+G VL Q G+ VAYFSEKLSG  
Sbjct: 967  QENAFHMLKHKLTHAPLLQLPDFNKTFELECDASGIGLGGVLLQEGKLVAYFSEKLSGPV 1026

Query: 2540 LRFSTYDVEFYAIVQAIKHWRHYLFQREFILYTDHDSLKHLGSQDKISHRHASWISYLQQ 2719
            L +STYD E YA+V+ ++ W+HYL+ +EF++++DH+SLKH+ SQ K++ RHA W+ +++ 
Sbjct: 1027 LNYSTYDKELYALVRTLETWQHYLWPKEFVIHSDHESLKHIRSQGKLNRRHAKWVEFIES 1086

Query: 2720 FTFVIKHKAGVSNRVADALSRRHGLLMELRVHVPGFDSFMDLYVDDPYFSHVLTQIQQGE 2899
            F +VIKHK G  N +A+ALSRR+ LL +L   + G ++  D Y  D  F+ VL   + G 
Sbjct: 1087 FPYVIKHKKGKENIIANALSRRYTLLTQLDYKIFGLETIKDQYAHDADFNDVLLHCKDGR 1146

Query: 2900 P-TAFLLEDGFIFRGTQLCIPACSLRLKIIQELHN---EGHVGRDRTLQLLAASYFWPSM 3067
                F++ DGF+FR  +LCIPA S+RL ++QE H     GH G  +T  +LA+ +FWP M
Sbjct: 1147 TWNKFVINDGFVFRANKLCIPASSVRLLLLQEAHGGGLMGHFGAKKTHDILASHFFWPQM 1206

Query: 3068 RREVGKFVERCRVCQLAKGAATNAGLYMPLPIPTQPWSDVSMDFVLGLPRTQRGNDSLYV 3247
            RR+VG+FV RC  CQ AK      GLYMPLP+PT PW D+SMDFVLGLPRT+RG DS++V
Sbjct: 1207 RRDVGRFVARCATCQKAKSRLHPHGLYMPLPVPTVPWEDISMDFVLGLPRTKRGRDSIFV 1266

Query: 3248 VVDRFSKMVHFIPCKKTSDAVSVAQLYFRDVYRLHGLPASIVSDRDTRFVSHFWRSLWRT 3427
            VVDRFSKMVHFIPC KT DA  +A L+FR++ RLHG+P +IVSDRDT+F+SHFWR+LW  
Sbjct: 1267 VVDRFSKMVHFIPCHKTDDASHIADLFFREIVRLHGVPNTIVSDRDTKFLSHFWRTLWAK 1326

Query: 3428 VNTQLNFSSAYHPQTDGQTEVVNRSLGNLLRCLVGDHPKAWDLKLPQAEFAHNHAVNRST 3607
            + T+L FS+  HPQTDGQ EVVNR+L  +LR ++  + K W+  LP  EFA N +++ +T
Sbjct: 1327 LGTKLLFSTTCHPQTDGQIEVVNRTLSTMLRAVLKKNIKMWEECLPHIEFACNRSLHSTT 1386

Query: 3608 GFSPFYVVYGLAPRGPLDLLALPSKVRPHATADDFIGHLQQVHQQTHSQLVTTTEKYKAD 3787
               PF +VY L PR P+DL+ LPS  + +  A      + ++H+ T   +     KYK  
Sbjct: 1387 KMCPFQIVYSLLPRAPIDLMPLPSSEKLNFDAKQRAELMLKLHETTKENIERMNAKYKFA 1446

Query: 3788 ADRKRRAVDFEVGDFVWAILTKDRFPAREYSKLASKKIGPVEIVEKINSNAYRLLLPSHI 3967
             D+ RR ++FE GD VW  L K+RFP    SKL  +  GP +++ KIN NAY++ LP+  
Sbjct: 1447 GDKGRRELNFEPGDLVWLHLRKERFPDLRKSKLMPRADGPFKVLAKINENAYKIDLPADF 1506

Query: 3968 HTSDVFNVKHLVPFVG 4015
              S  FNV  L P++G
Sbjct: 1507 GVSPTFNVADLKPYLG 1522



 Score =  186 bits (473), Expect = 6e-44
 Identities = 127/452 (28%), Positives = 187/452 (41%), Gaps = 32/452 (7%)
 Frame = +2

Query: 17   RVEIPTFNGSLKPEELIDWLSQVDEILDFKEVPDDRRVSLVTMRLTGRAQAWWQQLKVSR 196
            + +IP F+G   P+  + W   VD+     E P+  RV   T   T  A  WW       
Sbjct: 154  KFKIPPFDGKYDPDAYLSWEIAVDQKFACHEFPESTRVRAATSEFTDFASVWW------- 206

Query: 197  VRHGKPKITS----WDKFKKHIRSAFLPYNFDRELYQRFQNLRQGSRSVDDYSNEFYEFL 364
            + HGK    +    WD  K+ +R+ F+P  + R+L  R Q LRQ                
Sbjct: 207  IEHGKKNPNNMPQTWDALKRVMRARFVPSYYARDLLNRLQQLRQ---------------- 250

Query: 365  ARVDVNDSPTQLVSRYIGGLRLQLQDVLNMFDPLTVAEAHQRASQAEKQA-ARRTTANLR 541
                  ++    ++R++GGL  ++ D+++  D   +      A +AE++   RR +A   
Sbjct: 251  -----EETEDAAMARFLGGLNREIYDIVDYKDYTNMTRLFHLACKAEREVQGRRASAKAN 305

Query: 542  LXXXXXXXXXXXXXXXXXXXXAQQSAP----------------------PRGYSNPSQGR 655
                                 +  S P                      P   S  S GR
Sbjct: 306  FSAGKTSSWQTRTTPLAGRTASPSSTPTTSRAAPPPSSDKSATKAAQPAPSASSMASTGR 365

Query: 656  PGFRGCFNCGDLSHRQADCPKPPT---GSRGLFTDA--VESEPLPLFDTPIXXXXXXXXX 820
                 C  C    H Q DCP        + G ++ A   + + L L              
Sbjct: 366  MRDVQCHRCKGFGHVQRDCPSKRVLVVKNDGEYSSASDFDDDTLALLAADHADNEPPEEH 425

Query: 821  XXXXSGDVGPMLMLRRTFLSPRALETEWLRNNLFQSTCTIGGKVCTFIIDAGSCENVISE 1000
                  D    L+++R   +      +  R+ LFQ+ C +  + C  IID GSC N+ S 
Sbjct: 426  IGAAFADHYESLIVQRVLSAQMEKAEQNQRHTLFQTKCVVKERCCRMIIDGGSCNNLASS 485

Query: 1001 VAVSKLNLTTESHPKPYRLSWLSQGTDVMVSKRVLVNFSIGPTYQDSIYCDVVPMDACHL 1180
              V KL L+T+ HP  Y + WL+      V+K V +NF+IG  Y D + CDVVPM AC++
Sbjct: 486  EMVEKLALSTKPHPHSYYIQWLNNSGKAKVTKLVHINFAIG-NYHDVVECDVVPMQACNI 544

Query: 1181 LLGRPWQYDNTVQHDGRCNTYSFMFRGKKIVL 1276
            LLGRPWQ+D    H GR N YSF++  KKIVL
Sbjct: 545  LLGRPWQFDRDSMHHGRSNQYSFLYHDKKIVL 576


>gb|AAK94516.1| gag-pol polyprotein [Hordeum vulgare]
          Length = 1720

 Score =  952 bits (2462), Expect = 0.0
 Identities = 459/856 (53%), Positives = 604/856 (70%), Gaps = 5/856 (0%)
 Frame = +2

Query: 1463 FADVFPESLPSTLPPLRDIQHHIDLVAGAALPNRPHYRMSPKEHEELRRQVEELLARGHI 1642
            FADVFP+ +P  LPP+R I+H IDL+ GA+LPNR  YR +P+E +E+ RQV+ELL +G+I
Sbjct: 747  FADVFPQDVPPGLPPIRGIEHQIDLIPGASLPNRAPYRTNPEETKEIMRQVQELLDKGYI 806

Query: 1643 RESLSPCAVPALLTPKKDGTWRMCVDSRAINKITVRYRFPIPRLDDLLDQLGGACVFSKL 1822
            RESLSPCAVP +L PKKDGT RMCVD R IN IT+R R PIPRLDD+LD+L G+ +FSK+
Sbjct: 807  RESLSPCAVPIILVPKKDGTSRMCVDCRGINNITIRXRHPIPRLDDMLDELSGSIIFSKV 866

Query: 1823 DLKSGYHQIRIRTGDEWKTAFKTREGLYEWLVMPFGLSNAPSTFMRVMNQALRPFIGKFV 2002
            DL+SGYHQIR++ GDEWKTAFKT+ GLYEWLVMPFGL+NAPSTFMR+MN+ LR FIG+FV
Sbjct: 867  DLRSGYHQIRMKLGDEWKTAFKTKFGLYEWLVMPFGLTNAPSTFMRLMNEVLRAFIGRFV 926

Query: 2003 VVYFDDILIYSTDPILHIQHLREVLLVLRRDQFYAAPAKCAFLTTSIQFLGYVVSRDGLM 2182
            VVYFDDILIYS     H+ HLR V   LR  + +    KC F T  + FLGYVV+  G+ 
Sbjct: 927  VVYFDDILIYSRSLEDHLDHLRAVFTALRDARLFGNLGKCTFCTDRVSFLGYVVTPQGIE 986

Query: 2183 VDPAKVDAVSNWPIPSSITEVRSFHGLASFYRRFIPHFSGIMAPLTD-CMKGPKFQWTAE 2359
            VD AK++A+ +WP P ++T+VRSF G A FYRRF+  FS I APL +   K   + W   
Sbjct: 987  VDKAKIEAIESWPQPKTVTQVRSFLGXAGFYRRFVRDFSTIAAPLNELTKKDVPYSWGTA 1046

Query: 2360 AEVAFLEVKRRLISAPILVLPDFSLPFELHCDASHTGVGAVLSQCGRPVAYFSEKLSGAK 2539
             E AF  +K +L  AP+L LPDF+  FEL CDAS  G+G VL Q G+PVAYFSEKLSG  
Sbjct: 1047 QEEAFTVLKDKLTHAPLLQLPDFNKTFELECDASGIGLGGVLLQDGKPVAYFSEKLSGPS 1106

Query: 2540 LRFSTYDVEFYAIVQAIKHWRHYLFQREFILYTDHDSLKHLGSQDKISHRHASWISYLQQ 2719
            L +STYD E YA+V+ ++ W+HYL+ +EF++++DH+SLKH+ SQ K++ RHA W+ +++ 
Sbjct: 1107 LNYSTYDKELYALVRTLETWQHYLWPKEFVIHSDHESLKHIKSQAKLNRRHAKWVEFIET 1166

Query: 2720 FTFVIKHKAGVSNRVADALSRRHGLLMELRVHVPGFDSFMDLYVDDPYFSHVLTQIQQGE 2899
            F +VIKHK G  N +ADALSRR+ +L +L   + G ++  D YV D  F  VL   ++G 
Sbjct: 1167 FPYVIKHKKGKDNVIADALSRRYTMLSQLDFKIFGLETIKDQYVHDADFKDVLENCREGR 1226

Query: 2900 P-TAFLLEDGFIFRGTQLCIPACSLRLKIIQELHN---EGHVGRDRTLQLLAASYFWPSM 3067
                F++ +GF+FR  +LCIPA S+RL ++QE H     GH G  +   +LA  +FWP M
Sbjct: 1227 TWNKFIINNGFVFRANKLCIPASSIRLLLLQEAHGGGLMGHFGVKKMEDVLATHFFWPRM 1286

Query: 3068 RREVGKFVERCRVCQLAKGAATNAGLYMPLPIPTQPWSDVSMDFVLGLPRTQRGNDSLYV 3247
            RR+V +FV RC  CQ AK      GLYMPLP+P+ PW D+SMDFVLGLPRT++G DS++V
Sbjct: 1287 RRDVERFVARCTTCQKAKSRLNPHGLYMPLPVPSVPWEDISMDFVLGLPRTKKGRDSIFV 1346

Query: 3248 VVDRFSKMVHFIPCKKTSDAVSVAQLYFRDVYRLHGLPASIVSDRDTRFVSHFWRSLWRT 3427
            VVDRFSKM HFIPC K+ DA +VA L+FR++ RLHG+P +IVSDRD +F+SHFWR LW  
Sbjct: 1347 VVDRFSKMAHFIPCHKSDDAANVADLFFREIIRLHGVPNTIVSDRDAKFLSHFWRCLWAK 1406

Query: 3428 VNTQLNFSSAYHPQTDGQTEVVNRSLGNLLRCLVGDHPKAWDLKLPQAEFAHNHAVNRST 3607
            + T+L FS+  HPQTDGQTEVVNRSL  +LR ++ ++ K W+  LP  EFA+N +++ +T
Sbjct: 1407 LGTKLLFSTTCHPQTDGQTEVVNRSLSTMLRAVLKNNIKLWEECLPHIEFAYNRSLHSTT 1466

Query: 3608 GFSPFYVVYGLAPRGPLDLLALPSKVRPHATADDFIGHLQQVHQQTHSQLVTTTEKYKAD 3787
               PF +VYG  PR P+DLL +PS  + +  A +    + ++H+ T   +     +YK  
Sbjct: 1467 KMCPFEIVYGFLPRAPIDLLPIPSSEKVNFDAKERAELILKMHELTKENIERMNARYKLA 1526

Query: 3788 ADRKRRAVDFEVGDFVWAILTKDRFPAREYSKLASKKIGPVEIVEKINSNAYRLLLPSHI 3967
             D+ R+ V F  GD VW  L KDRFP    SKL  +  GP +++EKIN NAYRL LP+  
Sbjct: 1527 GDKGRKHVVFAPGDLVWLHLRKDRFPDLRKSKLMPRAGGPFKVLEKINDNAYRLELPADF 1586

Query: 3968 HTSDVFNVKHLVPFVG 4015
              S  FN+  L P++G
Sbjct: 1587 GVSPTFNIADLKPYLG 1602



 Score =  174 bits (442), Expect = 3e-40
 Identities = 127/459 (27%), Positives = 195/459 (42%), Gaps = 38/459 (8%)
 Frame = +2

Query: 17   RVEIPTFNGSLKPEELIDWLSQVDEILDFKEVPDDRRVSLVTMRLTGRAQAWWQQLKVSR 196
            ++ IP+F+G   P+  + W  + ++     + P+DRRV+      T  A  WW +    R
Sbjct: 189  KLNIPSFDGRYVPDLYLTWELETEQRFTCLQFPEDRRVAAAVCSFTSFACXWWSEY--CR 246

Query: 197  VRHGKPKITSWDKFKKHIRSAFLPYNFDRELYQRFQNLRQGSRSVDDYSNEFYEFLARVD 376
            + H     T W   K  +R+ ++P  + R+L Q  Q LRQG +SV++Y  E    + R  
Sbjct: 247  IHHANIPAT-WAALKTAMRTRWVPPYYQRDLLQNLQRLRQGKKSVEEYYQELQTGMIRCG 305

Query: 377  VNDSPTQLVSRYIGGLRLQLQDVLNMFDPLTVAEAHQRASQAEK-----QAARRT----- 526
            + +    +++R++GGL   +Q +L   D  T+      A +AE+     QA  RT     
Sbjct: 306  IVEDNEAMLARFMGGLNRDIQTILEYKDYXTITRLFHLACKAEREVQDRQALARTNFSAG 365

Query: 527  -----TANLRLXXXXXXXXXXXXXXXXXXXXAQQSAP--------PRGYSNPSQGRPGFR 667
                 T                          ++ AP        P G +  S       
Sbjct: 366  RTSSWTPRTTSTSTRPPASAPPVSAASSTRDTRKQAPAPSFAKSTPSGPAQSSSSSTAST 425

Query: 668  G------CFNCGDLSHRQADCPKPPT------GSRGLFTDAVESEPLPLFDTPIXXXXXX 811
            G      C  C    H   +CP          G     +D  + E L L  +        
Sbjct: 426  GQTHEVICRRCKGGGHYARECPSKRVMIITEDGGYDSASD-YDEETLALIASEERGVADT 484

Query: 812  XXXXXXXSGDVGPML--MLRRTFLSPRALETEW-LRNNLFQSTCTIGGKVCTFIIDAGSC 982
                   + D       ++ +  LS +  + E   R+NLF +   +  +    IID GSC
Sbjct: 485  AQETQYMAADYADRYESLVAQRVLSVQVTQVEQNQRHNLFHTKGVVKERSVRVIIDGGSC 544

Query: 983  ENVISEVAVSKLNLTTESHPKPYRLSWLSQGTDVMVSKRVLVNFSIGPTYQDSIYCDVVP 1162
             N+ S   V KL+LTT  HP PY + W +    V V++ V V+FSI  TY D + CDVVP
Sbjct: 545  NNLASMEMVEKLSLTTRPHPHPYYIQWFNNSGKVKVTRTVRVHFSIA-TYSDFVDCDVVP 603

Query: 1163 MDACHLLLGRPWQYDNTVQHDGRCNTYSFMFRGKKIVLV 1279
            M AC +LLGRPWQ+D    H GR N Y+ + + + I L+
Sbjct: 604  MQACSVLLGRPWQFDKNSVHHGRTNQYTLVHKDQNITLL 642


>gb|AAK94517.1| gag-pol polyprotein [Hordeum vulgare]
          Length = 1717

 Score =  952 bits (2462), Expect = 0.0
 Identities = 460/856 (53%), Positives = 603/856 (70%), Gaps = 5/856 (0%)
 Frame = +2

Query: 1463 FADVFPESLPSTLPPLRDIQHHIDLVAGAALPNRPHYRMSPKEHEELRRQVEELLARGHI 1642
            FADVFP+ +P  LPP+R I+H IDL+ GA+LPNR  YR +P+E +E+ RQV+ELL +G+I
Sbjct: 744  FADVFPQDVPPGLPPIRGIEHQIDLIPGASLPNRAPYRTNPEETKEIMRQVQELLDKGYI 803

Query: 1643 RESLSPCAVPALLTPKKDGTWRMCVDSRAINKITVRYRFPIPRLDDLLDQLGGACVFSKL 1822
            RESLSPCAVP +L PKKDGT RMCVD R IN IT+RYR PIPRLDD+LD+L G+ +FSK+
Sbjct: 804  RESLSPCAVPIILVPKKDGTSRMCVDCRGINNITIRYRHPIPRLDDMLDELSGSIIFSKV 863

Query: 1823 DLKSGYHQIRIRTGDEWKTAFKTREGLYEWLVMPFGLSNAPSTFMRVMNQALRPFIGKFV 2002
            DL+SGYHQIR++ GDEWKTAFKT+ GLYEWLVMPFGL+NAPSTFMR+MN+ LR FIG+FV
Sbjct: 864  DLRSGYHQIRMKLGDEWKTAFKTKFGLYEWLVMPFGLTNAPSTFMRLMNEVLRAFIGRFV 923

Query: 2003 VVYFDDILIYSTDPILHIQHLREVLLVLRRDQFYAAPAKCAFLTTSIQFLGYVVSRDGLM 2182
            VVYFDDILIYS     H+ HLR V   LR  + +    KC F T  + FLGYVV+  G+ 
Sbjct: 924  VVYFDDILIYSRSLEDHLDHLRAVFTALRDARLFGNLGKCTFCTDRVSFLGYVVTPQGIE 983

Query: 2183 VDPAKVDAVSNWPIPSSITEVRSFHGLASFYRRFIPHFSGIMAPLTD-CMKGPKFQWTAE 2359
            VD AK++A+ +WP P ++T+VRSF GLA FYRRF+  FS I APL +   K   + W   
Sbjct: 984  VDKAKIEAIESWPQPKTVTQVRSFLGLAGFYRRFVRDFSTIAAPLNELTKKDVPYSWGTA 1043

Query: 2360 AEVAFLEVKRRLISAPILVLPDFSLPFELHCDASHTGVGAVLSQCGRPVAYFSEKLSGAK 2539
             E AF  +K +L  AP+L LPDF+  FEL CDAS  G+G VL Q G+PVAYFSEKLSG  
Sbjct: 1044 QEEAFTVLKDKLTHAPLLQLPDFNKTFELECDASGIGLGGVLLQDGKPVAYFSEKLSGPS 1103

Query: 2540 LRFSTYDVEFYAIVQAIKHWRHYLFQREFILYTDHDSLKHLGSQDKISHRHASWISYLQQ 2719
            L +STYD E YA+V+ ++ W+HYL+ +EF++++DH+SLKH+ SQ K++ RHA W+ +++ 
Sbjct: 1104 LNYSTYDKELYALVRTLETWQHYLWPKEFVIHSDHESLKHIKSQAKLNRRHAKWVEFIET 1163

Query: 2720 FTFVIKHKAGVSNRVADALSRRHGLLMELRVHVPGFDSFMDLYVDDPYFSHVLTQIQQGE 2899
            F +VIK K G  N +ADALSRR+ +L +L   + G ++  D YV D  F  VL   ++G 
Sbjct: 1164 FPYVIKDKKGKDNVIADALSRRYTMLSQLDFKIFGLETIKDQYVHDADFKDVLENCREGR 1223

Query: 2900 P-TAFLLEDGFIFRGTQLCIPACSLRLKIIQELHN---EGHVGRDRTLQLLAASYFWPSM 3067
                F++ +GF+FR  +LCIPA S+RL ++QE H     GH G  +   +LA  +FWP M
Sbjct: 1224 TWNKFIINNGFVFRANKLCIPASSIRLLLLQEAHGGGLMGHFGVKKMEDVLATHFFWPRM 1283

Query: 3068 RREVGKFVERCRVCQLAKGAATNAGLYMPLPIPTQPWSDVSMDFVLGLPRTQRGNDSLYV 3247
            RR+V +FV RC  CQ AK      GLYMPLP+P+ PW D+SMDFVLGLPRT++G DS++V
Sbjct: 1284 RRDVERFVARCTTCQKAKSRLNPHGLYMPLPVPSVPWEDISMDFVLGLPRTKKGRDSIFV 1343

Query: 3248 VVDRFSKMVHFIPCKKTSDAVSVAQLYFRDVYRLHGLPASIVSDRDTRFVSHFWRSLWRT 3427
            VVDRFSKM HFIPC K+ DA +VA L+FR++ RLHG+P +IVSDRD +F+SHFWR LW  
Sbjct: 1344 VVDRFSKMAHFIPCHKSDDAANVADLFFREIIRLHGVPNTIVSDRDAKFLSHFWRCLWAK 1403

Query: 3428 VNTQLNFSSAYHPQTDGQTEVVNRSLGNLLRCLVGDHPKAWDLKLPQAEFAHNHAVNRST 3607
            + T+L FS+  HPQTDGQTEVVNRSL  +LR ++  + K W+  LP  EFA+N +++ +T
Sbjct: 1404 LGTKLLFSTTCHPQTDGQTEVVNRSLSTMLRAVLKTNLKLWEECLPHIEFAYNRSLHSTT 1463

Query: 3608 GFSPFYVVYGLAPRGPLDLLALPSKVRPHATADDFIGHLQQVHQQTHSQLVTTTEKYKAD 3787
               PF +VYG  PR P+DLL +PS  + +  A +    + ++H+ T   +     +YK  
Sbjct: 1464 KMCPFEIVYGFLPRAPIDLLPIPSSEKVNFDAKERAELILKMHELTKENIERMNARYKLA 1523

Query: 3788 ADRKRRAVDFEVGDFVWAILTKDRFPAREYSKLASKKIGPVEIVEKINSNAYRLLLPSHI 3967
             D+ R+ V F  GD VW  L KDRFP    SKL  +  GP +++EKIN NAYRL LP   
Sbjct: 1524 GDKGRKHVVFAPGDLVWLHLRKDRFPDLRKSKLMPRAGGPFKVLEKINDNAYRLELPXDF 1583

Query: 3968 HTSDVFNVKHLVPFVG 4015
              S  FN+  L P++G
Sbjct: 1584 GVSPTFNIADLKPYLG 1599



 Score =  174 bits (440), Expect = 4e-40
 Identities = 128/459 (27%), Positives = 196/459 (42%), Gaps = 38/459 (8%)
 Frame = +2

Query: 17   RVEIPTFNGSLKPEELIDWLSQVDEILDFKEVPDDRRVSLVTMRLTGRAQAWWQQLKVSR 196
            ++ IP+F+G   P+  + W  + ++     + P+DRRV+      T  A  WW +    R
Sbjct: 186  KLNIPSFDGRYVPDLYLTWELETEQRFTCLQFPEDRRVAAAVCSFTSFACIWWSEY--CR 243

Query: 197  VRHGKPKITSWDKFKKHIRSAFLPYNFDRELYQRFQNLRQGSRSVDDYSNEFYEFLARVD 376
            + H     T W   K  +R+ ++P  + R+L Q  Q LRQG +SV++Y  E    + R  
Sbjct: 244  IHHANIPAT-WAALKTAMRTRWVPPYYQRDLLQNLQRLRQGKKSVEEYYQELQTGMIRCG 302

Query: 377  VNDSPTQLVSRYIGGLRLQLQDVLNMFDPLTVAEAHQRASQAEK-----QAARRT----- 526
            + +    +++R++GGL   +Q +L   D  T+      A +AE+     QA  RT     
Sbjct: 303  IVEDNEAMLARFMGGLNRDIQTILEYKDYNTITRLFHLACKAEREVQDRQALARTNFSAG 362

Query: 527  -----TANLRLXXXXXXXXXXXXXXXXXXXXAQQSAP--------PRGYSNPSQGRPGFR 667
                 T                          ++ AP        P G +  S       
Sbjct: 363  RTSSWTPRTTSTSTRPPASAPPVSAANSTRDTRKQAPAPSFAKSTPSGPAQSSSSSTAST 422

Query: 668  G------CFNCGDLSHRQADCPKPPT------GSRGLFTDAVESEPLPLFDTPIXXXXXX 811
            G      C  C    H   +CP          G     +D  + E L L  +        
Sbjct: 423  GQTHEVICRRCKGGGHYARECPSKRVMIITEDGGYDSASD-YDEETLALIASEERGVXDT 481

Query: 812  XXXXXXXSGDVGPML--MLRRTFLSPRALETEW-LRNNLFQSTCTIGGKVCTFIIDAGSC 982
                   + D       ++ +  LS +  + E   R+NLF +   +  +    IID GSC
Sbjct: 482  AQETQYMAADYADRYESLVAQRVLSVQVTQVEQNQRHNLFHTKGVVKERSVRVIIDGGSC 541

Query: 983  ENVISEVAVSKLNLTTESHPKPYRLSWLSQGTDVMVSKRVLVNFSIGPTYQDSIYCDVVP 1162
             N+ S   V KL+LTT  HP PY + W +    V V++ V V+FSI  TY D + CDVVP
Sbjct: 542  NNLASMEMVEKLSLTTRPHPHPYYIQWFNNSGKVKVTRTVRVHFSIA-TYSDFVDCDVVP 600

Query: 1163 MDACHLLLGRPWQYDNTVQHDGRCNTYSFMFRGKKIVLV 1279
            M AC +LLGRPWQ+D    H GR N Y+ + + + I L+
Sbjct: 601  MQACSVLLGRPWQFDKNSVHHGRTNQYTLVHKDQNITLL 639


>gb|AAK91332.1|AC090441_14 Putative gag-pol polyprotein [Oryza sativa Japonica Group]
            gi|15217296|gb|AAK92640.1|AC079634_1 Putative
            retroelement [Oryza sativa Japonica Group]
            gi|31431373|gb|AAP53161.1| retrotransposon protein,
            putative, Ty3-gypsy subclass [Oryza sativa Japonica
            Group]
          Length = 1708

 Score =  950 bits (2455), Expect = 0.0
 Identities = 456/856 (53%), Positives = 608/856 (71%), Gaps = 5/856 (0%)
 Frame = +2

Query: 1463 FADVFPESLPSTLPPLRDIQHHIDLVAGAALPNRPHYRMSPKEHEELRRQVEELLARGHI 1642
            +AD+FP+ +P  LPP+R I+H IDL+ GA+LPNR  YR +P+E +E++RQV+ELL +G++
Sbjct: 716  YADIFPKEVPPGLPPIRGIEHQIDLIPGASLPNRAPYRTNPEETKEIQRQVQELLDKGYV 775

Query: 1643 RESLSPCAVPALLTPKKDGTWRMCVDSRAINKITVRYRFPIPRLDDLLDQLGGACVFSKL 1822
            RESLSPC++P LL PKKDG+WRMCVD RAIN IT+RYR PIPRLDD+LD+L G+ VFSK+
Sbjct: 776  RESLSPCSIPVLLVPKKDGSWRMCVDCRAINNITIRYRHPIPRLDDMLDELSGSLVFSKI 835

Query: 1823 DLKSGYHQIRIRTGDEWKTAFKTREGLYEWLVMPFGLSNAPSTFMRVMNQALRPFIGKFV 2002
            DL+SGYHQIR++ GDEWKTAFKT+ GLYEWLVMPFGL+NAPSTF+R+MN+ LR FIG+FV
Sbjct: 836  DLRSGYHQIRMKLGDEWKTAFKTKFGLYEWLVMPFGLTNAPSTFIRLMNEVLRAFIGRFV 895

Query: 2003 VVYFDDILIYSTDPILHIQHLREVLLVLRRDQFYAAPAKCAFLTTSIQFLGYVVSRDGLM 2182
            VVYFDDILIYS     H  HLR V   LR ++ +    KC F T  + FLGYVV+  G+ 
Sbjct: 896  VVYFDDILIYSRSIEDHHGHLRAVFDALRDERLFGNLEKCTFCTDRVSFLGYVVTPQGIE 955

Query: 2183 VDPAKVDAVSNWPIPSSITEVRSFHGLASFYRRFIPHFSGIMAPLTDCMK-GPKFQWTAE 2359
            VD AKV+A+ +WP+P++IT+VRSF GLA FYRRF+  FS I APL +  K    F W A 
Sbjct: 956  VDQAKVEAIHSWPVPTTITQVRSFLGLAGFYRRFVKDFSTIAAPLHELTKRNVTFTWAAA 1015

Query: 2360 AEVAFLEVKRRLISAPILVLPDFSLPFELHCDASHTGVGAVLSQCGRPVAYFSEKLSGAK 2539
               AF  +K +L  AP+L LPDF+  FEL CDAS  G+G VL Q G+P+ YFSEKLSG  
Sbjct: 1016 QRNAFDTLKDKLTHAPLLQLPDFNKTFELECDASGIGLGGVLLQEGKPIEYFSEKLSGPS 1075

Query: 2540 LRFSTYDVEFYAIVQAIKHWRHYLFQREFILYTDHDSLKHLGSQDKISHRHASWISYLQQ 2719
            L +STYD E +A+V+ ++ W+HYL+ +EF++++DH+SLKH+ SQ K++ RHA W+ +++ 
Sbjct: 1076 LNYSTYDKELFALVRTLETWQHYLWPKEFVIHSDHESLKHIRSQAKLNRRHAKWVEFIES 1135

Query: 2720 FTFVIKHKAGVSNRVADALSRRHGLLMELRVHVPGFDSFMDLYVDDPYFSHVLTQIQQGE 2899
            F +VIKHK G  N +ADALSRR+ +L +L   + G ++  + Y  D  F  VL   ++G 
Sbjct: 1136 FPYVIKHKKGKENVIADALSRRYAMLSQLDFKIFGLETIKEQYAHDDDFKDVLLNCKEGR 1195

Query: 2900 P-TAFLLEDGFIFRGTQLCIPACSLRLKIIQELHN---EGHVGRDRTLQLLAASYFWPSM 3067
                F+L +GF+FR  +LCIPA S+R+ ++QE H     GH G  +T  +LA  +FWP M
Sbjct: 1196 TWNKFVLTNGFVFRANKLCIPASSVRMLLLQEAHGGGLMGHFGVKKTEDILADHFFWPKM 1255

Query: 3068 RREVGKFVERCRVCQLAKGAATNAGLYMPLPIPTQPWSDVSMDFVLGLPRTQRGNDSLYV 3247
            RR+V +FV RC  CQ AK      GLYMPLP+P+ PW D+SMDFVLGLPRT++G DS++V
Sbjct: 1256 RRDVERFVARCTTCQKAKLRLNPHGLYMPLPVPSVPWEDISMDFVLGLPRTKKGRDSIFV 1315

Query: 3248 VVDRFSKMVHFIPCKKTSDAVSVAQLYFRDVYRLHGLPASIVSDRDTRFVSHFWRSLWRT 3427
            VVDRFSKM HFIPC K+ DA  VA L+FR++ RLHG+P +IVSDRDT+F+SHFWR+LW  
Sbjct: 1316 VVDRFSKMAHFIPCHKSDDATHVADLFFREIVRLHGVPNTIVSDRDTKFLSHFWRTLWAK 1375

Query: 3428 VNTQLNFSSAYHPQTDGQTEVVNRSLGNLLRCLVGDHPKAWDLKLPQAEFAHNHAVNRST 3607
            + T+L FS+  HPQTDGQTEVVNR+L  +LR ++  + K W+  LP  EFA+N + + +T
Sbjct: 1376 LGTKLLFSTTCHPQTDGQTEVVNRTLSTMLRAVLKKNIKMWEECLPHVEFAYNRSQHSTT 1435

Query: 3608 GFSPFYVVYGLAPRGPLDLLALPSKVRPHATADDFIGHLQQVHQQTHSQLVTTTEKYKAD 3787
               PF +VYGL PR P+DLL LP+  R +  A      + ++H+ T   +     KYK  
Sbjct: 1436 KKCPFEIVYGLLPRAPIDLLPLPTSERVNFDAKYHAELMLKLHETTKENIERMNIKYKLA 1495

Query: 3788 ADRKRRAVDFEVGDFVWAILTKDRFPAREYSKLASKKIGPVEIVEKINSNAYRLLLPSHI 3967
              + ++ V FE GD VW  L KDRFP    SKL  +  GP ++++KIN N Y+L LP+  
Sbjct: 1496 GSKGKKHVAFEPGDLVWLHLRKDRFPNLRKSKLLPRADGPFKVLQKINDNTYKLELPADF 1555

Query: 3968 HTSDVFNVKHLVPFVG 4015
              S  FN+  L P++G
Sbjct: 1556 GVSPTFNIADLKPYLG 1571



 Score =  188 bits (478), Expect = 2e-44
 Identities = 130/454 (28%), Positives = 202/454 (44%), Gaps = 37/454 (8%)
 Frame = +2

Query: 26   IPTFNGSLKPEELIDWLSQVDEILDFKEVPDDRRVSLVTMRLTGRAQAWWQQLKVSRVRH 205
            IP F+    P+  + W   +D+     + P+++RV   T   T  A  WW +   S   +
Sbjct: 159  IPCFDEKYDPDAYLTWELAIDQKFACHDFPENKRVRAATSEFTDFASIWWSEFVRSNPNN 218

Query: 206  GKPKITSWDKFKKHIRSAFLPYNFDRELYQRFQNLRQGSRSVDDYSNEFYEFLARVDVND 385
                  +WD  K+ +R+ F+P    R+L  + Q LRQG++SV++Y       + R  + +
Sbjct: 219  TPQ---TWDAMKRVMRARFVPSYHARDLLHKLQQLRQGNKSVEEYYQALQTGMLRCGLVE 275

Query: 386  SPTQLVSRYIGGLRLQLQDVLNMFDPLTVAEAHQRASQAEKQA-ARRTTANLRLXXXXXX 562
            +    ++R++GGL  ++QD+L   +  ++      A +AE++   RR +    +      
Sbjct: 276  NDDAGMARFMGGLNREIQDILAYKEYNSINRLFHLACKAEREVQGRRASFRTNISAGRAS 335

Query: 563  XXXXXXXXXXXXXXAQQSA------------------PPRGY---------SNPSQGRPG 661
                          A  S+                  P RG          S  S GR  
Sbjct: 336  SWTSSNVAAPSTRAAAPSSSNNKLRPSTTNSTPCPSEPTRGVAATPSKSSSSVASSGRTR 395

Query: 662  FRGCFNCGDLSHRQADCPKPPT---GSRGLFTDA--VESEPLPLFDTPIXXXXXXXXXXX 826
               C  C    H + DCP        + G ++ A  ++ E   L  T             
Sbjct: 396  DIQCLRCKGYGHVRKDCPSTRVMIVRADGGYSSASDLDEETYALLATNNAGKGDAPHQDE 455

Query: 827  XXSGDVGP----MLMLRRTFLSPRALETEWLRNNLFQSTCTIGGKVCTFIIDAGSCENVI 994
               G         L+++R   +      +  R+ LFQ+ C I  + C  IID GSC N+ 
Sbjct: 456  EHIGAEAAEHYESLVVQRVLSAQMERAEQNQRHTLFQTKCVIKERSCRVIIDRGSCNNLA 515

Query: 995  SEVAVSKLNLTTESHPKPYRLSWLSQGTDVMVSKRVLVNFSIGPTYQDSIYCDVVPMDAC 1174
            S   V KL L+T+ HP+PY + WL+    V V++ V V+F+IG +Y DSI CDVVPM AC
Sbjct: 516  SAEMVEKLALSTQPHPQPYYIQWLNSSGKVKVTRLVRVHFAIG-SYHDSINCDVVPMQAC 574

Query: 1175 HLLLGRPWQYDNTVQHDGRCNTYSFMFRGKKIVL 1276
             + LGRPWQ+D    H G+ N YSF+  GKK+VL
Sbjct: 575  SIFLGRPWQFDKDSLHFGKSNQYSFVHNGKKLVL 608


>gb|AAF79348.1|AC007887_7 F15O4.13 [Arabidopsis thaliana]
          Length = 1887

 Score =  948 bits (2451), Expect = 0.0
 Identities = 463/890 (52%), Positives = 610/890 (68%), Gaps = 4/890 (0%)
 Frame = +2

Query: 1463 FADVFPESLPSTLPPLRDIQHHIDLVAGAALPNRPHYRMSPKEHEELRRQVEELLARGHI 1642
            + DVFPE  P  LPP+R I+H ID V GA+LPNRP YR +P E +EL +QV EL+ RGHI
Sbjct: 880  YTDVFPEENPVGLPPIRGIEHQIDFVPGASLPNRPAYRTNPVETKELEKQVTELMERGHI 939

Query: 1643 RESLSPCAVPALLTPKKDGTWRMCVDSRAINKITVRYRFPIPRLDDLLDQLGGACVFSKL 1822
            RES+SPCAVP LL PKKDG+WRMCVD RAIN ITV+YR PIPRLDD+LD+L G+ +FSK+
Sbjct: 940  RESMSPCAVPVLLVPKKDGSWRMCVDCRAINNITVKYRHPIPRLDDMLDELHGSSIFSKV 999

Query: 1823 DLKSGYHQIRIRTGDEWKTAFKTREGLYEWLVMPFGLSNAPSTFMRVMNQALRPFIGKFV 2002
            DLKSGYHQIR++ GDEWKTAFKT +GLYEWLVMPFGL+NAPSTFMR+MN  LR FIG+FV
Sbjct: 1000 DLKSGYHQIRMKEGDEWKTAFKTIQGLYEWLVMPFGLTNAPSTFMRLMNHVLRAFIGRFV 1059

Query: 2003 VVYFDDILIYSTDPILHIQHLREVLLVLRRDQFYAAPAKCAFLTTSIQFLGYVVSRDGLM 2182
            +VYFDDIL+YS     H++HL+ VL VLR+++ YA   KC F T ++ FLG+VVS DG+ 
Sbjct: 1060 IVYFDDILVYSKSLEEHVEHLKMVLEVLRKEKLYANLKKCTFGTDNLVFLGFVVSTDGVK 1119

Query: 2183 VDPAKVDAVSNWPIPSSITEVRSFHGLASFYRRFIPHFSGIMAPLTDCM-KGPKFQWTAE 2359
            VD  KV A+  WP P S+ EVRSFHGLA FYRRF+  FS + APLT+ + K   F+W   
Sbjct: 1120 VDEEKVKAIREWPSPKSVGEVRSFHGLAGFYRRFVKDFSTLAAPLTEVIKKNVGFKWEQA 1179

Query: 2360 AEVAFLEVKRRLISAPILVLPDFSLPFELHCDASHTGVGAVLSQCGRPVAYFSEKLSGAK 2539
             E AF  +K +L  AP+L LPDF   FE+ CDAS  G+G VL Q  +P+AYFSEKL GA 
Sbjct: 1180 QEDAFQALKEKLTHAPVLSLPDFLKTFEIECDASGVGIGVVLMQDKKPIAYFSEKLGGAT 1239

Query: 2540 LRFSTYDVEFYAIVQAIKHWRHYLFQREFILYTDHDSLKHLGSQDKISHRHASWISYLQQ 2719
            L + TYD E YA+V+A++  +HYL+ +EF+++TDH+SLKHL  Q K++ RHA W+ +++ 
Sbjct: 1240 LNYPTYDKELYALVRALQTGQHYLWPKEFVIHTDHESLKHLKGQQKLNKRHARWVEFIET 1299

Query: 2720 FTFVIKHKAGVSNRVADALSRRHGLLMELRVHVPGFDSFMDLYVDDPYFSHVLTQIQQGE 2899
            F +VIK+K G  N VADALSRR+ LL  L   + GF+    LY +D  F  + +  ++  
Sbjct: 1300 FPYVIKYKKGKDNVVADALSRRYVLLSSLDAKLLGFEHIKSLYANDSDFEKIYSSCEKFA 1359

Query: 2900 PTAFLLEDGFIFRGTQLCIPACSLRLKIIQELHN---EGHVGRDRTLQLLAASYFWPSMR 3070
               +   DGF+F   +LCIP  SLR   I+E H     GH G  +T++++   + WP M+
Sbjct: 1360 FGKYYRHDGFLFYDNRLCIPNSSLRELFIREAHGGGLMGHFGVSKTIKVMQDHFHWPHMK 1419

Query: 3071 REVGKFVERCRVCQLAKGAATNAGLYMPLPIPTQPWSDVSMDFVLGLPRTQRGNDSLYVV 3250
            R+V +  ERC  C+ AK  +   GLY PLPIP+ PW+D+SMDFV+GLPRT+ G DS++VV
Sbjct: 1420 RDVERICERCPTCKQAKAKSQPHGLYTPLPIPSHPWNDISMDFVVGLPRTRTGKDSIFVV 1479

Query: 3251 VDRFSKMVHFIPCKKTSDAVSVAQLYFRDVYRLHGLPASIVSDRDTRFVSHFWRSLWRTV 3430
            VDRFSKM HFIPC KT DA+ +A L+FR+V RLHG+P +IVSDRDT+F+S+FW++LW  +
Sbjct: 1480 VDRFSKMAHFIPCHKTDDAIHIANLFFREVVRLHGMPKTIVSDRDTKFLSYFWKTLWSKL 1539

Query: 3431 NTQLNFSSAYHPQTDGQTEVVNRSLGNLLRCLVGDHPKAWDLKLPQAEFAHNHAVNRSTG 3610
             T+L FS+  HPQTDGQTEVVNR+L  LLR L+  + K W+  LP  EFA+NH+++ ++ 
Sbjct: 1540 GTKLLFSTTCHPQTDGQTEVVNRTLSTLLRALIKKNLKTWEDCLPHVEFAYNHSMHSASK 1599

Query: 3611 FSPFYVVYGLAPRGPLDLLALPSKVRPHATADDFIGHLQQVHQQTHSQLVTTTEKYKADA 3790
            FSPF +VYG  P  PLDL+ LP   R           +QQ+H+Q    +   T++Y   A
Sbjct: 1600 FSPFQIVYGFNPTTPLDLMPLPLSERVSLDGKKKAELVQQIHEQAKKNIEEKTKQYAKHA 1659

Query: 3791 DRKRRAVDFEVGDFVWAILTKDRFPAREYSKLASKKIGPVEIVEKINSNAYRLLLPSHIH 3970
            ++ R+ V F  GD VW  L K+RFP    SKL S+  GP +++++IN+NAY L L    +
Sbjct: 1660 NKSRKEVIFNEGDLVWIHLRKERFPKERKSKLMSRIDGPFKVLKRINNNAYSLDLQGKYN 1719

Query: 3971 TSDVFNVKHLVPFVGXXXXXXXXXXXXXXRANLLYPGEHDAARFMQCLDH 4120
             S+ FNV  L PF+                  ++   +H A   M  LDH
Sbjct: 1720 VSNSFNVADLFPFIADNTDLRSNPFQLGEDDVIMTSLDHGADEIMTSLDH 1769



 Score =  165 bits (417), Expect = 2e-37
 Identities = 106/398 (26%), Positives = 181/398 (45%), Gaps = 13/398 (3%)
 Frame = +2

Query: 11   GFRVEIPTFNGSLKPEELIDWLSQVDEILDFKEVPDDRRVSLVTMRLTGRAQAWWQQLKV 190
            G ++ IP+F G+  P+E ++W  +++ + + ++  ++ +V +        A +WW QL  
Sbjct: 436  GLKIRIPSFKGTNDPDEYLEWEKKIELVFNCQQYTEESKVKVAPTEFQNYALSWWDQLVT 495

Query: 191  SRVRHGKPKITSWDKFKKHIRSAFLPYNFDRELYQRFQNLRQGSRSVDDYSNEFYEFLAR 370
            +R R G   I SW + K  +R  F+P ++ REL+ R +NL QG++SV++Y  E    + R
Sbjct: 496  TRRRAGDYPIESWTQMKTIMRKRFVPSHYYRELHNRLRNLVQGNKSVEEYYKEMETLMLR 555

Query: 371  VDVNDSPTQLVSRYIGGLRLQLQDVLNMFDPLTVAEAHQRASQAEKQAARRTT----ANL 538
             D+ +    ++SR++GGL   + D L +   + + E   +A   EKQ  RR++     + 
Sbjct: 556  ADIQEDNEAIMSRFMGGLNRDIIDRLEVQHYVELEELLHKAIMFEKQLKRRSSKPSFGSG 615

Query: 539  RLXXXXXXXXXXXXXXXXXXXXAQQSAPPRGYSNPSQGRPGFRGCFNCGDLSHRQADCPK 718
            +                       +    +G       R      F C    H  ++C  
Sbjct: 616  KPSYHKDERSGFQKDYKPFIKPKVEDQDQKGKGKAVMTRTRDIKGFKCQGHGHYASEC-- 673

Query: 719  PPTGSRGLF---TDAVESEPLPLFDTPIXXXXXXXXXXXXXSGDVGPMLMLRRTFLSPRA 889
              +  R +    T  +ESE   L ++               +   G +L+  +       
Sbjct: 674  --SNKRIMIIKDTGEIESEDEQLEES--------SSTEDYEAPSKGELLVTMKALSVIAK 723

Query: 890  LETEWLRNNLFQSTCTIGGKVCTFIIDAGSCENVISEVAVSKLNLTTESHPKPYRLSWLS 1069
             + +  R NLF S+C +  KVC+ IID GSC NV SE  V KL L    HP+PY+L WL+
Sbjct: 724  TDEQEQRENLFHSSCMVNDKVCSLIIDGGSCTNVASETMVEKLGLKVMKHPRPYKLQWLN 783

Query: 1070 QGTDVMVSKRVLVNFSIG------PTYQDSIYCDVVPM 1165
            +  ++ V ++V V  SIG      P     +Y D + M
Sbjct: 784  EDGEMSVDRQVKVPLSIGKKTILVPMTPHEVYLDQLSM 821


>gb|AAQ56388.1| putative gag-pol polyprotein [Oryza sativa Japonica Group]
            gi|91795218|gb|ABE60890.1| putative polyprotein [Oryza
            sativa Japonica Group]
          Length = 1616

 Score =  948 bits (2451), Expect = 0.0
 Identities = 458/856 (53%), Positives = 606/856 (70%), Gaps = 5/856 (0%)
 Frame = +2

Query: 1463 FADVFPESLPSTLPPLRDIQHHIDLVAGAALPNRPHYRMSPKEHEELRRQVEELLARGHI 1642
            +AD+FP+ +P  LPP+R I+H IDL+ GA+LPNR  YR +P+E +E++RQV+ELL +G++
Sbjct: 716  YADIFPKEVPPGLPPIRGIEHQIDLIPGASLPNRAPYRTNPEETKEIQRQVQELLDKGYV 775

Query: 1643 RESLSPCAVPALLTPKKDGTWRMCVDSRAINKITVRYRFPIPRLDDLLDQLGGACVFSKL 1822
            RESLSPC+VP LL PKKDG+WRMCVD RAIN IT+RYR PIPRLDD+LD+L G+ VFSK+
Sbjct: 776  RESLSPCSVPVLLVPKKDGSWRMCVDCRAINNITIRYRHPIPRLDDMLDELSGSLVFSKI 835

Query: 1823 DLKSGYHQIRIRTGDEWKTAFKTREGLYEWLVMPFGLSNAPSTFMRVMNQALRPFIGKFV 2002
            DL+SGYHQIR++ GDEWKTAFKT+ GLYEWLVMPFGL+NAPSTFMR+MN+ LR FIG+FV
Sbjct: 836  DLRSGYHQIRMKLGDEWKTAFKTKFGLYEWLVMPFGLTNAPSTFMRLMNEVLRAFIGRFV 895

Query: 2003 VVYFDDILIYSTDPILHIQHLREVLLVLRRDQFYAAPAKCAFLTTSIQFLGYVVSRDGLM 2182
            VVYFDDILIYS     H  HLR V   LR  + +    KC F T  + FL YVV+  G+ 
Sbjct: 896  VVYFDDILIYSRSIEDHHGHLRAVFDALRDARLFGNLEKCTFCTDRVSFLSYVVTPQGIE 955

Query: 2183 VDPAKVDAVSNWPIPSSITEVRSFHGLASFYRRFIPHFSGIMAPLTDCMK-GPKFQWTAE 2359
            VD AKV+A+ NWP+P++IT+VRSF GLA FYRRF+  FS I APL +  K    F W A 
Sbjct: 956  VDQAKVEAIHNWPVPTTITQVRSFLGLAGFYRRFVKDFSTIAAPLHELTKRNVTFTWAAA 1015

Query: 2360 AEVAFLEVKRRLISAPILVLPDFSLPFELHCDASHTGVGAVLSQCGRPVAYFSEKLSGAK 2539
               AF  +K +L  AP+L LPDF+  FE  CDAS  G+G VL Q G+PVAYFSEKLSG  
Sbjct: 1016 QRNAFDTLKDKLTHAPLLQLPDFNKTFEHECDASGIGLGGVLLQEGKPVAYFSEKLSGPS 1075

Query: 2540 LRFSTYDVEFYAIVQAIKHWRHYLFQREFILYTDHDSLKHLGSQDKISHRHASWISYLQQ 2719
            L +STYD E +A+V+ ++ W+HYL+ +EF++++DH+SLKH+ SQ K++ RHA W+ +++ 
Sbjct: 1076 LNYSTYDKELFALVRTLETWQHYLWPKEFVIHSDHESLKHIRSQAKLNRRHAKWVEFIES 1135

Query: 2720 FTFVIKHKAGVSNRVADALSRRHGLLMELRVHVPGFDSFMDLYVDDPYFSHVLTQIQQGE 2899
            F +VIKHK G  N +ADALSRR+ +L +L   + G ++  + Y  D  F +VL   ++G 
Sbjct: 1136 FPYVIKHKKGKENVIADALSRRYAMLSQLDFKIFGLETIKEQYAHDDDFKNVLLNCKEGR 1195

Query: 2900 P-TAFLLEDGFIFRGTQLCIPACSLRLKIIQELHN---EGHVGRDRTLQLLAASYFWPSM 3067
                F+L +GF+FR  +LCIPA S+R+ ++QE H     GH G  +T  +LA  +FWP M
Sbjct: 1196 TWNKFVLTNGFVFRANKLCIPASSVRMLLLQEAHGGGLMGHFGVKKTEDILADHFFWPKM 1255

Query: 3068 RREVGKFVERCRVCQLAKGAATNAGLYMPLPIPTQPWSDVSMDFVLGLPRTQRGNDSLYV 3247
            RR+V +FV RC  CQ AK      GLYMPLP+P+ PW D+SMDFVLGLPRT++G DS++V
Sbjct: 1256 RRDVERFVARCTTCQKAKSRLNPHGLYMPLPVPSVPWEDISMDFVLGLPRTKKGRDSIFV 1315

Query: 3248 VVDRFSKMVHFIPCKKTSDAVSVAQLYFRDVYRLHGLPASIVSDRDTRFVSHFWRSLWRT 3427
            VVDRFSKM HFIPC K+ DA  VA L+FR++ RLHG+P +IVSDRDT+F+SHFWR+LW  
Sbjct: 1316 VVDRFSKMAHFIPCHKSDDATHVADLFFREIVRLHGVPNTIVSDRDTKFLSHFWRTLWAK 1375

Query: 3428 VNTQLNFSSAYHPQTDGQTEVVNRSLGNLLRCLVGDHPKAWDLKLPQAEFAHNHAVNRST 3607
            + T+  FS+  HPQTDGQTEVVNR+L  +LR ++  + K W+  LP  EFA+N + + +T
Sbjct: 1376 LGTKFLFSTTCHPQTDGQTEVVNRTLSTMLRAVLKKNIKMWEECLPHVEFAYNRSQHSTT 1435

Query: 3608 GFSPFYVVYGLAPRGPLDLLALPSKVRPHATADDFIGHLQQVHQQTHSQLVTTTEKYKAD 3787
               PF +VYGL PR P+DLL  P+  R +  A      + ++H+ T   +     KYK  
Sbjct: 1436 KKCPFEIVYGLLPRAPIDLLPHPTSERVNFDAKYRAELMLKLHETTKENIERMNIKYKLA 1495

Query: 3788 ADRKRRAVDFEVGDFVWAILTKDRFPAREYSKLASKKIGPVEIVEKINSNAYRLLLPSHI 3967
              + ++ V FE GD VW  L KDRFP    SKL  +  GP ++++KIN NAY+L LP+  
Sbjct: 1496 GSKGKKHVAFEPGDLVWLHLRKDRFPNLRKSKLLPRADGPFKVLQKINDNAYKLELPADF 1555

Query: 3968 HTSDVFNVKHLVPFVG 4015
              S  FN+  L P++G
Sbjct: 1556 GVSPTFNIADLKPYLG 1571



 Score =  191 bits (485), Expect = 3e-45
 Identities = 131/454 (28%), Positives = 203/454 (44%), Gaps = 37/454 (8%)
 Frame = +2

Query: 26   IPTFNGSLKPEELIDWLSQVDEILDFKEVPDDRRVSLVTMRLTGRAQAWWQQLKVSRVRH 205
            IP F+G   P+  + W   +D+     + P+++ V   T   T  A  WW +   S   +
Sbjct: 159  IPCFDGKYDPDAYLTWELAIDQKFACHDFPENKCVRAATSEFTDFASIWWSEFVRSNPNN 218

Query: 206  GKPKITSWDKFKKHIRSAFLPYNFDRELYQRFQNLRQGSRSVDDYSNEFYEFLARVDVND 385
                  +WD  K+ +R+ F+P    R+L  + Q LRQG++SV++Y       + R  + +
Sbjct: 219  TPQ---TWDAMKRVMRARFVPSYHARDLLHKLQQLRQGNKSVEEYYQALQTGMLRCGLVE 275

Query: 386  SPTQLVSRYIGGLRLQLQDVLNMFDPLTVAEAHQRASQAEKQA-ARRTTANLRLXXXXXX 562
            +    ++R++GGL  ++QD+L   +  ++      A +AE++   RR +    +      
Sbjct: 276  NDDAGMARFMGGLNREIQDILTYKEYNSINHLFHLACKAEREVQGRRASFRTNISAGRAS 335

Query: 563  XXXXXXXXXXXXXXAQQSA------------------PPRGY---------SNPSQGRPG 661
                          A  S+                  P RG          S  S GR  
Sbjct: 336  SWTSSNAAAPSTRAAAPSSSSNKLRPSTTNSTPCPSEPTRGVAATPSKTSSSVASSGRTR 395

Query: 662  FRGCFNCGDLSHRQADCPKPPT---GSRGLFTDA--VESEPLPLFDTPIXXXXXXXXXXX 826
               C  C    H + DCP        + G ++ A  ++ E   L  T             
Sbjct: 396  DIQCLRCKGYGHVRKDCPSTRVMIVRADGGYSSASDLDGETYALLATNNAREGDAPHQDE 455

Query: 827  XXSGDVGP----MLMLRRTFLSPRALETEWLRNNLFQSTCTIGGKVCTFIIDAGSCENVI 994
               G         L+++R   +      +  R+ LFQ+ C I  + C  IID GSC N+ 
Sbjct: 456  EHIGAEAAEHYESLVVQRVLSAQMERAEQNQRHTLFQTKCVIKERSCRVIIDGGSCNNLA 515

Query: 995  SEVAVSKLNLTTESHPKPYRLSWLSQGTDVMVSKRVLVNFSIGPTYQDSIYCDVVPMDAC 1174
            S   V KL L+T+ HP+PY + WL+    V V++ V V+F+IG +Y DSI CDVVPM AC
Sbjct: 516  SAEMVEKLALSTQPHPQPYYIQWLNSSGKVKVTRLVRVHFAIG-SYHDSINCDVVPMQAC 574

Query: 1175 HLLLGRPWQYDNTVQHDGRCNTYSFMFRGKKIVL 1276
             +LLGRPWQ+D    H G+ N YSF+  GKK+VL
Sbjct: 575  SMLLGRPWQFDKDSLHFGKSNQYSFVHNGKKLVL 608