BLASTX nr result

ID: Mentha29_contig00008255 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Mentha29_contig00008255
         (1643 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_006352543.1| PREDICTED: probable RNA polymerase II transc...   655   0.0  
ref|XP_004248296.1| PREDICTED: probable RNA polymerase II transc...   652   0.0  
ref|XP_002276057.1| PREDICTED: probable RNA polymerase II transc...   625   e-176
gb|EYU33732.1| hypothetical protein MIMGU_mgv1a007394mg [Mimulus...   598   e-168
emb|CAN79528.1| hypothetical protein VITISV_026261 [Vitis vinifera]   570   e-160
ref|XP_006857637.1| hypothetical protein AMTR_s00061p00135540 [A...   543   e-151
ref|XP_006474796.1| PREDICTED: probable RNA polymerase II transc...   540   e-151
ref|XP_006452718.1| hypothetical protein CICLE_v10007802mg [Citr...   538   e-150
ref|XP_006452717.1| hypothetical protein CICLE_v10007802mg [Citr...   538   e-150
ref|XP_007222888.1| hypothetical protein PRUPE_ppa003591mg [Prun...   521   e-145
ref|XP_007015592.1| BSD domain (BTF2-like transcription factors,...   509   e-141
ref|XP_004496077.1| PREDICTED: probable RNA polymerase II transc...   508   e-141
ref|XP_002530618.1| TFIIH basal transcription factor complex sub...   501   e-139
ref|XP_006589332.1| PREDICTED: probable RNA polymerase II transc...   499   e-138
ref|XP_007144178.1| hypothetical protein PHAVU_007G134900g [Phas...   498   e-138
ref|XP_006307068.1| hypothetical protein CARUB_v10008654mg [Caps...   494   e-137
ref|NP_175971.3| probable RNA polymerase II transcription factor...   494   e-137
ref|XP_002310512.2| transcription factor-related family protein ...   493   e-137
ref|XP_002894525.1| hypothetical protein ARALYDRAFT_892577 [Arab...   493   e-136
ref|XP_003591640.1| General transcription factor IIH subunit [Me...   491   e-136

>ref|XP_006352543.1| PREDICTED: probable RNA polymerase II transcription factor B subunit
            1-1-like [Solanum tuberosum]
          Length = 599

 Score =  655 bits (1690), Expect = 0.0
 Identities = 322/469 (68%), Positives = 389/469 (82%)
 Frame = +1

Query: 1    RIKLLQEDSELQTMHKELVFGGTLTEAEFWSRKKELLDLNDSRRPKQRLALKNEMWSVKP 180
            RIKLLQE+SELQ +H++LV GG L+EAEFW+ +K+LL+ +++++PKQR+ALKN+MWSVKP
Sbjct: 129  RIKLLQENSELQKLHRQLVIGGILSEAEFWAARKKLLEQSENKKPKQRVALKNDMWSVKP 188

Query: 181  LSDGQSNRVTFNLTPEIIHQIFAEKPAVRQAYLNFVPRKMTEKEFWTKYSRAQYLHSTRN 360
            LSDGQ+NRVTFNLTPE+IHQIFAEKPAVRQAYL FVP KM+EKEFWTKYSRA+YLHST+N
Sbjct: 189  LSDGQTNRVTFNLTPEVIHQIFAEKPAVRQAYLKFVPGKMSEKEFWTKYSRAEYLHSTKN 248

Query: 361  VVXXXXXXXXXXXXXVFLKRDDMLANEARRKIRRVDPTVDIEADEGDDYIHLPDHGLLHG 540
            +V             VFLK+DDML +EARRKIRRVDPT+D+EADEGDDY+HLPDHGL  G
Sbjct: 249  IVAAAAEAAEDEELAVFLKQDDMLVSEARRKIRRVDPTLDMEADEGDDYMHLPDHGLPQG 308

Query: 541  EAKDVLDSQYEPYRRSFLQDLNQHAAVVLQGRVVDVELGDTRSVAEALVRNKQDELSDEK 720
            E K++L+ QYEP++RSF Q LNQHAAVVL+GRV+DVELGDTRSVAEA  R  Q E + E 
Sbjct: 309  ETKEILEPQYEPFKRSFSQYLNQHAAVVLRGRVIDVELGDTRSVAEAFTRTYQAEQATEV 368

Query: 721  LNRNLEKQLSDRISRSAEIEDLQGPRDPAVALLSIKDPRDYFDSQQANALKALGDTGSAT 900
             + N  ++   ++SR AEIEDLQGP+DP VALLSIKDPRDYFDSQQANA+KALGD  +  
Sbjct: 369  SDENAYRERVKKVSRVAEIEDLQGPQDPPVALLSIKDPRDYFDSQQANAIKALGDAETGI 428

Query: 901  EPLRSCVSAGQAYDSLRNVIFDIKEMGLDEPIMNQDIALKVLNGLTQSISSTKLHLGNSP 1080
              L+  VS  +A+ SL++ I +I   GL EPI++ ++ALKV NGL+Q+ISSTK +LG +P
Sbjct: 429  RQLKFSVSKEEAFCSLKDSISEINSQGLIEPIISPEVALKVFNGLSQNISSTKYYLGKNP 488

Query: 1081 NESVLDMLPKVTKEELLRHWAAVQELLKQFWSSYPLTTKYLYDKVNRVKDHMSKIYPKLQ 1260
            +ESVLD LP  TK ELL HW ++QELLK FWSSYP+TTKY Y KV R+KD MS+IYPKLQ
Sbjct: 489  HESVLDQLPSATKNELLLHWTSIQELLKHFWSSYPITTKYFYAKVTRLKDAMSQIYPKLQ 548

Query: 1261 EMKESVQSDFRHQVSLLVHPMLQALDAAFAHYDADVQKRASKSGTRHNG 1407
            E+KESVQSD RHQVSLLV PMLQALDAAFAHYDAD+QKR++KSG R NG
Sbjct: 549  EIKESVQSDVRHQVSLLVQPMLQALDAAFAHYDADIQKRSAKSGERPNG 597


>ref|XP_004248296.1| PREDICTED: probable RNA polymerase II transcription factor B subunit
            1-1-like [Solanum lycopersicum]
          Length = 599

 Score =  652 bits (1683), Expect = 0.0
 Identities = 322/469 (68%), Positives = 386/469 (82%)
 Frame = +1

Query: 1    RIKLLQEDSELQTMHKELVFGGTLTEAEFWSRKKELLDLNDSRRPKQRLALKNEMWSVKP 180
            RIKLLQE+SELQ +H+ELV  G L+E EFW+ +K+LL+ +++++PKQR+ALKN+MWSVKP
Sbjct: 129  RIKLLQENSELQNLHRELVIAGILSETEFWAARKKLLEQSENKKPKQRVALKNDMWSVKP 188

Query: 181  LSDGQSNRVTFNLTPEIIHQIFAEKPAVRQAYLNFVPRKMTEKEFWTKYSRAQYLHSTRN 360
            LSDGQ+NRVTFNLTPE+IHQIFAEKPAVRQAYL FVP KM+EKEFWTKYSRA+YLHST+N
Sbjct: 189  LSDGQTNRVTFNLTPEVIHQIFAEKPAVRQAYLKFVPGKMSEKEFWTKYSRAEYLHSTKN 248

Query: 361  VVXXXXXXXXXXXXXVFLKRDDMLANEARRKIRRVDPTVDIEADEGDDYIHLPDHGLLHG 540
            +V             VFLK+DDML +EARRKIRRVDPT+D+EADEGDDY+HLPDHGL  G
Sbjct: 249  IVAAAAEAAEDEELAVFLKQDDMLVSEARRKIRRVDPTLDMEADEGDDYMHLPDHGLPQG 308

Query: 541  EAKDVLDSQYEPYRRSFLQDLNQHAAVVLQGRVVDVELGDTRSVAEALVRNKQDELSDEK 720
            E K++L+ QYEP++RSF Q LNQHAAVVLQGRV+DVELGDTRSVAEA  R  Q E + E 
Sbjct: 309  ETKEILEPQYEPFKRSFSQYLNQHAAVVLQGRVIDVELGDTRSVAEAFTRTNQAEQATEV 368

Query: 721  LNRNLEKQLSDRISRSAEIEDLQGPRDPAVALLSIKDPRDYFDSQQANALKALGDTGSAT 900
             + N  ++   ++SR AEIEDLQGPRDP VALLSIKDPRDYFDSQQANA+KALGD  +  
Sbjct: 369  SDENAYRERVKKVSRVAEIEDLQGPRDPPVALLSIKDPRDYFDSQQANAIKALGDAETGI 428

Query: 901  EPLRSCVSAGQAYDSLRNVIFDIKEMGLDEPIMNQDIALKVLNGLTQSISSTKLHLGNSP 1080
              L+  VS  +A+ SL++ I +I   GL EPI++ ++ALKV N L+Q+ISSTK HLG +P
Sbjct: 429  RQLKFRVSKEEAFCSLKDSISEINSQGLIEPIISPEVALKVFNLLSQNISSTKYHLGKNP 488

Query: 1081 NESVLDMLPKVTKEELLRHWAAVQELLKQFWSSYPLTTKYLYDKVNRVKDHMSKIYPKLQ 1260
            +ESVLD LP  TK ELL HW ++QELLK FWSSYP+TTKY Y KV R+KD MS+IYPKLQ
Sbjct: 489  HESVLDQLPSATKNELLLHWTSIQELLKHFWSSYPITTKYFYAKVTRLKDAMSQIYPKLQ 548

Query: 1261 EMKESVQSDFRHQVSLLVHPMLQALDAAFAHYDADVQKRASKSGTRHNG 1407
            E+KESVQSD RHQVSLLV PMLQALDAAFAHYDAD+QKR+++SG R NG
Sbjct: 549  EIKESVQSDVRHQVSLLVQPMLQALDAAFAHYDADLQKRSARSGERPNG 597


>ref|XP_002276057.1| PREDICTED: probable RNA polymerase II transcription factor B subunit
            1-1 [Vitis vinifera] gi|296090002|emb|CBI39821.3| unnamed
            protein product [Vitis vinifera]
          Length = 602

 Score =  625 bits (1611), Expect = e-176
 Identities = 311/470 (66%), Positives = 377/470 (80%), Gaps = 1/470 (0%)
 Frame = +1

Query: 1    RIKLLQEDSELQTMHKELVFGGTLTEAEFWSRKKELLDLNDSRRPKQRLALKNEMWS-VK 177
            RIKLL+EDSELQ +HK+ V  G LTEAEFW+ +K+LLD N SR  KQR+  K+ M S +K
Sbjct: 131  RIKLLREDSELQKLHKQFVLSGVLTEAEFWATRKKLLDGNTSRTSKQRVGFKSAMISDLK 190

Query: 178  PLSDGQSNRVTFNLTPEIIHQIFAEKPAVRQAYLNFVPRKMTEKEFWTKYSRAQYLHSTR 357
            PL+DG++NRVTFNLTPEIIHQIFAEKPAV QA+LNFVP KMTEK+FW KY RA+YLH TR
Sbjct: 191  PLTDGRTNRVTFNLTPEIIHQIFAEKPAVHQAFLNFVPNKMTEKDFWNKYCRAEYLHCTR 250

Query: 358  NVVXXXXXXXXXXXXXVFLKRDDMLANEARRKIRRVDPTVDIEADEGDDYIHLPDHGLLH 537
            N V             VFLK DD+LANEARRKIRRVDPT+D+EAD+GDDY+HLPDHG+  
Sbjct: 251  NTVAAAAEAAEDEELAVFLKHDDILANEARRKIRRVDPTLDMEADQGDDYMHLPDHGIFR 310

Query: 538  GEAKDVLDSQYEPYRRSFLQDLNQHAAVVLQGRVVDVELGDTRSVAEALVRNKQDELSDE 717
              +K+++D QYE YRR+  QDLN+HAAVVL+GR +DVEL DTR+VAEAL ++K+ E ++E
Sbjct: 311  DGSKEIIDPQYEQYRRTLSQDLNRHAAVVLEGRPIDVELEDTRTVAEALAKSKRVEAANE 370

Query: 718  KLNRNLEKQLSDRISRSAEIEDLQGPRDPAVALLSIKDPRDYFDSQQANALKALGDTGSA 897
            K + ++ ++  +RISR  EIEDLQ PRD   A L IKDPRDYFDSQQANALK LGDT + 
Sbjct: 371  KSDGSVTRERLERISRMTEIEDLQAPRDLPFAALCIKDPRDYFDSQQANALKTLGDTLAG 430

Query: 898  TEPLRSCVSAGQAYDSLRNVIFDIKEMGLDEPIMNQDIALKVLNGLTQSISSTKLHLGNS 1077
            ++ ++  +S  +AY SLR  I +IK +GL +PI+  DIALKVLNGLTQ+ISSTK HLG +
Sbjct: 431  SKQIKCSLSTQEAYGSLRGFISEIKSVGLSDPIVKPDIALKVLNGLTQNISSTKFHLGKN 490

Query: 1078 PNESVLDMLPKVTKEELLRHWAAVQELLKQFWSSYPLTTKYLYDKVNRVKDHMSKIYPKL 1257
            P ESVLD LP +TKEELL HW ++QELL+ FWSSYP+TT YLY K +R+KD MS+IYPKL
Sbjct: 491  PQESVLDRLPIITKEELLHHWTSIQELLRHFWSSYPITTTYLYTKASRLKDAMSQIYPKL 550

Query: 1258 QEMKESVQSDFRHQVSLLVHPMLQALDAAFAHYDADVQKRASKSGTRHNG 1407
            QE+KESVQSDFRHQVSLLV PMLQALDAAFAHYDAD QKR+++SG R NG
Sbjct: 551  QEIKESVQSDFRHQVSLLVQPMLQALDAAFAHYDADQQKRSARSGERPNG 600


>gb|EYU33732.1| hypothetical protein MIMGU_mgv1a007394mg [Mimulus guttatus]
          Length = 409

 Score =  598 bits (1541), Expect = e-168
 Identities = 296/408 (72%), Positives = 347/408 (85%)
 Frame = +1

Query: 163  MWSVKPLSDGQSNRVTFNLTPEIIHQIFAEKPAVRQAYLNFVPRKMTEKEFWTKYSRAQY 342
            MW+VKPLSDGQSN+VTFNLTPEIIHQIF+EKPAVRQAYLNFVP +++EK+FWTKYS+A+Y
Sbjct: 1    MWTVKPLSDGQSNKVTFNLTPEIIHQIFSEKPAVRQAYLNFVPHRLSEKDFWTKYSKAEY 60

Query: 343  LHSTRNVVXXXXXXXXXXXXXVFLKRDDMLANEARRKIRRVDPTVDIEADEGDDYIHLPD 522
            L+S+RNV              VFLKRDDMLA+EARRK+RRVDPTVD++ADEGDDYIHL D
Sbjct: 61   LNSSRNVSVAAAEAALDEELAVFLKRDDMLADEARRKVRRVDPTVDMQADEGDDYIHLQD 120

Query: 523  HGLLHGEAKDVLDSQYEPYRRSFLQDLNQHAAVVLQGRVVDVELGDTRSVAEALVRNKQD 702
            HGL+H E KD ++SQYEP+R+SF QDLNQH AVVLQGRV+D EL DTRSVAEA++R KQ 
Sbjct: 121  HGLVHDEPKDYMESQYEPFRKSFSQDLNQHGAVVLQGRVLDAELRDTRSVAEAIIRIKQA 180

Query: 703  ELSDEKLNRNLEKQLSDRISRSAEIEDLQGPRDPAVALLSIKDPRDYFDSQQANALKALG 882
            ELSDE   RNLE+ +SDRISR AE+EDLQGPRDPAVA LSIKDPRDYFDSQQANALKAL 
Sbjct: 181  ELSDEVSTRNLERDISDRISRMAEMEDLQGPRDPAVAPLSIKDPRDYFDSQQANALKALA 240

Query: 883  DTGSATEPLRSCVSAGQAYDSLRNVIFDIKEMGLDEPIMNQDIALKVLNGLTQSISSTKL 1062
            D       L+S VS+ +AY SL+N++   + MGL EP+M+ ++ALKVL+ LTQ+ISSTK 
Sbjct: 241  DGSGGERTLKSSVSSHEAYGSLKNLVSHNRVMGLTEPVMSHEVALKVLSALTQNISSTKF 300

Query: 1063 HLGNSPNESVLDMLPKVTKEELLRHWAAVQELLKQFWSSYPLTTKYLYDKVNRVKDHMSK 1242
            HLG++P+ESVLD LPK TK+ELL  W +VQELLK FWSSYP+TTKYLY KV R+KD MS+
Sbjct: 301  HLGSNPHESVLDRLPKSTKDELLIQWTSVQELLKHFWSSYPITTKYLYTKVTRMKDAMSQ 360

Query: 1243 IYPKLQEMKESVQSDFRHQVSLLVHPMLQALDAAFAHYDADVQKRASK 1386
            IY KLQE+KESV SDFRHQVSLLVHPMLQALDAAFAHYDADVQ+R++K
Sbjct: 361  IYLKLQEIKESVPSDFRHQVSLLVHPMLQALDAAFAHYDADVQRRSTK 408


>emb|CAN79528.1| hypothetical protein VITISV_026261 [Vitis vinifera]
          Length = 735

 Score =  570 bits (1470), Expect = e-160
 Identities = 284/442 (64%), Positives = 350/442 (79%), Gaps = 1/442 (0%)
 Frame = +1

Query: 7    KLLQEDSELQTMHKELVFGGTLTEAEFWSRKKELLDLNDSRRPKQRLALKNEMWS-VKPL 183
            K+  + SELQ +HK+ V  G LTEAEFW+ +K+LLD N SR  KQR+  K+ M S +KPL
Sbjct: 176  KVKWDCSELQKLHKQFVLSGVLTEAEFWATRKKLLDGNTSRTSKQRVGFKSAMISDLKPL 235

Query: 184  SDGQSNRVTFNLTPEIIHQIFAEKPAVRQAYLNFVPRKMTEKEFWTKYSRAQYLHSTRNV 363
            +DG++NRVTFNLTPEIIHQIFAEKPAV QA+LNFVP KMTEK+FW KY RA+YLH TRN 
Sbjct: 236  TDGRTNRVTFNLTPEIIHQIFAEKPAVHQAFLNFVPNKMTEKDFWNKYCRAEYLHCTRNT 295

Query: 364  VXXXXXXXXXXXXXVFLKRDDMLANEARRKIRRVDPTVDIEADEGDDYIHLPDHGLLHGE 543
            V             VFLK DD+LA+EARRKIRRVDPT+D+EAD+GDDY+HLPDHG+    
Sbjct: 296  VAAAAEAAEDEELAVFLKHDDILASEARRKIRRVDPTLDMEADQGDDYMHLPDHGIFRDG 355

Query: 544  AKDVLDSQYEPYRRSFLQDLNQHAAVVLQGRVVDVELGDTRSVAEALVRNKQDELSDEKL 723
            +K+++D QYE YRR+  QDLN+HAAVVL+GR +DVEL DTR+VAEAL ++K+ E ++EK 
Sbjct: 356  SKEIIDPQYEQYRRTLSQDLNRHAAVVLEGRPIDVELEDTRTVAEALAKSKRVEAANEKS 415

Query: 724  NRNLEKQLSDRISRSAEIEDLQGPRDPAVALLSIKDPRDYFDSQQANALKALGDTGSATE 903
            + ++ ++  +RISR  EIEDLQ PRD   A L IKDPRDYFDSQQANALK LGDT + ++
Sbjct: 416  DGSVTRERLERISRMTEIEDLQAPRDLPFAALCIKDPRDYFDSQQANALKTLGDTLAGSK 475

Query: 904  PLRSCVSAGQAYDSLRNVIFDIKEMGLDEPIMNQDIALKVLNGLTQSISSTKLHLGNSPN 1083
             ++  +S+ +AY SLR  I +IK +GL +PI+  DIALKVLNGLTQ+ISSTK HLG +P 
Sbjct: 476  QIKCSLSSQEAYGSLRGFISEIKSVGLSDPIVKPDIALKVLNGLTQNISSTKFHLGKNPQ 535

Query: 1084 ESVLDMLPKVTKEELLRHWAAVQELLKQFWSSYPLTTKYLYDKVNRVKDHMSKIYPKLQE 1263
            ESVLD LP +TKEELL HW ++QELL+ FWSSYP+TT YLY K +R+KD MS+IYPKLQE
Sbjct: 536  ESVLDRLPIITKEELLHHWTSIQELLRHFWSSYPITTTYLYTKASRLKDAMSQIYPKLQE 595

Query: 1264 MKESVQSDFRHQVSLLVHPMLQ 1329
            +KESVQSDFRHQVSLLV PMLQ
Sbjct: 596  IKESVQSDFRHQVSLLVQPMLQ 617


>ref|XP_006857637.1| hypothetical protein AMTR_s00061p00135540 [Amborella trichopoda]
            gi|548861733|gb|ERN19104.1| hypothetical protein
            AMTR_s00061p00135540 [Amborella trichopoda]
          Length = 626

 Score =  543 bits (1398), Expect = e-151
 Identities = 276/464 (59%), Positives = 350/464 (75%), Gaps = 1/464 (0%)
 Frame = +1

Query: 1    RIKLLQEDSELQTMHKELVFGGTLTEAEFWSRKKELLDLNDSRRPKQRLALKNEMWS-VK 177
            R+ LL+EDSELQ +H++LV GG LTE EFW+ +K LLD    +  KQR   K+ M + V+
Sbjct: 135  RMNLLREDSELQKLHRQLVIGGVLTETEFWATRKNLLDDAAHKASKQRAGFKSAMLADVR 194

Query: 178  PLSDGQSNRVTFNLTPEIIHQIFAEKPAVRQAYLNFVPRKMTEKEFWTKYSRAQYLHSTR 357
            PL+DG++N+VTF+LTPEIIHQIFAEKPAV QA+L FVP KM+E++FWTKY RA+YLH T+
Sbjct: 195  PLTDGRTNKVTFSLTPEIIHQIFAEKPAVHQAFLKFVPSKMSERDFWTKYCRAEYLHRTK 254

Query: 358  NVVXXXXXXXXXXXXXVFLKRDDMLANEARRKIRRVDPTVDIEADEGDDYIHLPDHGLLH 537
            N V             VFLK DD+LA+EARRKIRRVDPTVD+ AD GDDY HLP HG+L 
Sbjct: 255  NSVAAAAEAAEDEELAVFLKHDDILASEARRKIRRVDPTVDMAADLGDDYSHLPGHGILR 314

Query: 538  GEAKDVLDSQYEPYRRSFLQDLNQHAAVVLQGRVVDVELGDTRSVAEALVRNKQDELSDE 717
              +K+ +DS+ E  +R+ LQDLN+HAAVVL+GR +DVELGDTR+VAEAL R+KQ E++ E
Sbjct: 315  DGSKESVDSESELPKRTLLQDLNRHAAVVLEGRTLDVELGDTRTVAEALARSKQAEVATE 374

Query: 718  KLNRNLEKQLSDRISRSAEIEDLQGPRDPAVALLSIKDPRDYFDSQQANALKALGDTGSA 897
              +    ++  +R+S+  EIEDLQ PR    A L IKDPR+YFDSQ+ANA KA GDTGS 
Sbjct: 375  TSDETENQKRLERVSQMTEIEDLQAPRSLPYAPLCIKDPREYFDSQRANAFKATGDTGSG 434

Query: 898  TEPLRSCVSAGQAYDSLRNVIFDIKEMGLDEPIMNQDIALKVLNGLTQSISSTKLHLGNS 1077
                   +S  QAY+SLR  I ++K +G  +PI+  D+ALKVLN + Q +SST   LG +
Sbjct: 435  VNKDCCHLSTKQAYESLRAQILEVKSVGFKDPIVIPDLALKVLNDVNQQLSSTDPQLGKN 494

Query: 1078 PNESVLDMLPKVTKEELLRHWAAVQELLKQFWSSYPLTTKYLYDKVNRVKDHMSKIYPKL 1257
            P  +VLDMLP  TKEELL+HW ++QELL+ FWSSYPLTT +L+ KVNRVKD M++IY KL
Sbjct: 495  PQATVLDMLPHRTKEELLQHWTSIQELLRHFWSSYPLTTTFLHAKVNRVKDAMAQIYRKL 554

Query: 1258 QEMKESVQSDFRHQVSLLVHPMLQALDAAFAHYDADVQKRASKS 1389
             E+KESVQS+FRHQVSLLV PMLQ LD AF HYDA++QKR++K+
Sbjct: 555  PEVKESVQSEFRHQVSLLVKPMLQVLDEAFKHYDAEMQKRSTKT 598


>ref|XP_006474796.1| PREDICTED: probable RNA polymerase II transcription factor B subunit
            1-1-like [Citrus sinensis]
          Length = 597

 Score =  540 bits (1390), Expect = e-151
 Identities = 278/471 (59%), Positives = 353/471 (74%), Gaps = 2/471 (0%)
 Frame = +1

Query: 1    RIKLLQEDSELQTMHKELVFGGTLTEAEFWSRKKELLDLNDSRRPKQRLALKNEMWS-VK 177
            RIKLLQE+SELQ +H++ V G  LTEAEFW+ +K+LLD++ S++ KQR+  K+ M S ++
Sbjct: 131  RIKLLQENSELQKLHRQFVGGNILTEAEFWAARKKLLDIDPSKKSKQRVGFKSAMISDIR 190

Query: 178  PLSDGQSNRVTFNLTPEIIHQIFAEKPAVRQAYLNFVPRKMTEKEFWTKYSRAQYLHSTR 357
            P +DG++N+VTF+LTPEII QIFAEKPAV +A+LNFVP KMTE EFWTKY RA+YL  T+
Sbjct: 191  PATDGRTNKVTFSLTPEIILQIFAEKPAVHRAFLNFVPNKMTEMEFWTKYCRAEYLSRTK 250

Query: 358  NVVXXXXXXXXXXXXXVFLKRDDMLANEARRKIRRVDPTVDIEADEGDDYIHLPDHGLLH 537
            N               VFLK DD+LANE R+KIRRVDPT+D+EADEGDDY HLPDHG+  
Sbjct: 251  NYHAVVAEAAEDEELAVFLKEDDILANEVRKKIRRVDPTLDMEADEGDDYTHLPDHGIFR 310

Query: 538  GEAKDVLDSQYEPYRRSFLQDLNQHAAVVLQGRVVDVELGD-TRSVAEALVRNKQDELSD 714
               K+  + Q E YRR+ LQDLN+HAAVVL+GR +DVE  D TR++AEAL R+K+    +
Sbjct: 311  DGTKESNELQSEHYRRTLLQDLNRHAAVVLEGRTIDVEREDSTRALAEALARSKR---GN 367

Query: 715  EKLNRNLEKQLSDRISRSAEIEDLQGPRDPAVALLSIKDPRDYFDSQQANALKALGDTGS 894
            E  + N  ++  DR  R AEIEDLQ P    +A LSIKD R+YFDSQQAN LKA  D   
Sbjct: 368  EGADNNANEERLDRTPRVAEIEDLQAPHCLPLAPLSIKDAREYFDSQQANTLKASRD--- 424

Query: 895  ATEPLRSCVSAGQAYDSLRNVIFDIKEMGLDEPIMNQDIALKVLNGLTQSISSTKLHLGN 1074
            A   ++  +S  +AY S+R+ I +IK+MGL +PI+N ++ALKV +GLT +ISS K HLG 
Sbjct: 425  AQASMKCSLSKQEAYRSVRDAISEIKDMGLSDPIVNPEVALKVYSGLTHNISSIKYHLGK 484

Query: 1075 SPNESVLDMLPKVTKEELLRHWAAVQELLKQFWSSYPLTTKYLYDKVNRVKDHMSKIYPK 1254
            +P E+VLD LP  TKE+LL HW ++QELLK FWSSYP+TT YLY KVNR+KD +S IYP+
Sbjct: 485  NPRETVLDRLPSATKEKLLYHWMSIQELLKHFWSSYPITTPYLYSKVNRLKDALSNIYPQ 544

Query: 1255 LQEMKESVQSDFRHQVSLLVHPMLQALDAAFAHYDADVQKRASKSGTRHNG 1407
            L+EMKES+ +D RHQVSLLV PM QALDAA  HYDAD+QKR++KSG + NG
Sbjct: 545  LEEMKESLPADLRHQVSLLVRPMQQALDAAIQHYDADLQKRSAKSGEKPNG 595


>ref|XP_006452718.1| hypothetical protein CICLE_v10007802mg [Citrus clementina]
            gi|557555944|gb|ESR65958.1| hypothetical protein
            CICLE_v10007802mg [Citrus clementina]
          Length = 564

 Score =  538 bits (1387), Expect = e-150
 Identities = 277/471 (58%), Positives = 354/471 (75%), Gaps = 2/471 (0%)
 Frame = +1

Query: 1    RIKLLQEDSELQTMHKELVFGGTLTEAEFWSRKKELLDLNDSRRPKQRLALKNEMWS-VK 177
            RIKLLQE+SELQ +H++ V G  LTEAEFW+ +K+LLD + S++ KQR+  K+ M S ++
Sbjct: 98   RIKLLQENSELQKLHRQFVGGNILTEAEFWAARKKLLDRDPSKKSKQRVGFKSAMISDIR 157

Query: 178  PLSDGQSNRVTFNLTPEIIHQIFAEKPAVRQAYLNFVPRKMTEKEFWTKYSRAQYLHSTR 357
            P +DG++N+VTF+LTPEII QIFAEKPAV +A+LNFVP KMTE EFWTKY RA+YL  T+
Sbjct: 158  PATDGRTNKVTFSLTPEIILQIFAEKPAVHRAFLNFVPNKMTEMEFWTKYCRAEYLSRTK 217

Query: 358  NVVXXXXXXXXXXXXXVFLKRDDMLANEARRKIRRVDPTVDIEADEGDDYIHLPDHGLLH 537
            N               VFLK DD+LANE R+KIRRVDPT+D+EADEGDDY HLPDHG+  
Sbjct: 218  NYHAVVAEAAEDEELAVFLKEDDILANEVRKKIRRVDPTLDMEADEGDDYTHLPDHGIFR 277

Query: 538  GEAKDVLDSQYEPYRRSFLQDLNQHAAVVLQGRVVDVELGD-TRSVAEALVRNKQDELSD 714
               K+  + Q E YRR+ LQDLN+HAAVVL+GR +DVE  D TR++AEAL R+K+    +
Sbjct: 278  DGTKESNELQSEHYRRTLLQDLNRHAAVVLEGRTIDVEREDSTRALAEALARSKR---GN 334

Query: 715  EKLNRNLEKQLSDRISRSAEIEDLQGPRDPAVALLSIKDPRDYFDSQQANALKALGDTGS 894
            E  + N  ++  DR  R AEIEDLQ P    +A LSIKD R+YFDSQQAN LKA  D+ +
Sbjct: 335  EGADNNANEERLDRTPRVAEIEDLQAPHCLPLAPLSIKDAREYFDSQQANTLKASRDSQA 394

Query: 895  ATEPLRSCVSAGQAYDSLRNVIFDIKEMGLDEPIMNQDIALKVLNGLTQSISSTKLHLGN 1074
            +   ++  +S  +AY S+R+ I +IK+MGL +PI+N ++ALKV +GLT +ISS K HLG 
Sbjct: 395  S---MKCSLSRQEAYGSVRDAISEIKDMGLSDPIVNPEVALKVYSGLTHNISSIKYHLGK 451

Query: 1075 SPNESVLDMLPKVTKEELLRHWAAVQELLKQFWSSYPLTTKYLYDKVNRVKDHMSKIYPK 1254
            +P E+VLD LP  TKE+LL HW ++QELLK FWSSYP+TT YLY KVNR+KD +S IYP+
Sbjct: 452  NPRETVLDRLPSATKEKLLYHWMSIQELLKHFWSSYPITTPYLYSKVNRLKDALSNIYPQ 511

Query: 1255 LQEMKESVQSDFRHQVSLLVHPMLQALDAAFAHYDADVQKRASKSGTRHNG 1407
            L+EMKES+ +D RHQVSLLV PM QALDAA  HYDAD+QKR++KSG + NG
Sbjct: 512  LEEMKESLPADLRHQVSLLVRPMQQALDAAIQHYDADLQKRSAKSGEKPNG 562


>ref|XP_006452717.1| hypothetical protein CICLE_v10007802mg [Citrus clementina]
            gi|557555943|gb|ESR65957.1| hypothetical protein
            CICLE_v10007802mg [Citrus clementina]
          Length = 597

 Score =  538 bits (1387), Expect = e-150
 Identities = 277/471 (58%), Positives = 354/471 (75%), Gaps = 2/471 (0%)
 Frame = +1

Query: 1    RIKLLQEDSELQTMHKELVFGGTLTEAEFWSRKKELLDLNDSRRPKQRLALKNEMWS-VK 177
            RIKLLQE+SELQ +H++ V G  LTEAEFW+ +K+LLD + S++ KQR+  K+ M S ++
Sbjct: 131  RIKLLQENSELQKLHRQFVGGNILTEAEFWAARKKLLDRDPSKKSKQRVGFKSAMISDIR 190

Query: 178  PLSDGQSNRVTFNLTPEIIHQIFAEKPAVRQAYLNFVPRKMTEKEFWTKYSRAQYLHSTR 357
            P +DG++N+VTF+LTPEII QIFAEKPAV +A+LNFVP KMTE EFWTKY RA+YL  T+
Sbjct: 191  PATDGRTNKVTFSLTPEIILQIFAEKPAVHRAFLNFVPNKMTEMEFWTKYCRAEYLSRTK 250

Query: 358  NVVXXXXXXXXXXXXXVFLKRDDMLANEARRKIRRVDPTVDIEADEGDDYIHLPDHGLLH 537
            N               VFLK DD+LANE R+KIRRVDPT+D+EADEGDDY HLPDHG+  
Sbjct: 251  NYHAVVAEAAEDEELAVFLKEDDILANEVRKKIRRVDPTLDMEADEGDDYTHLPDHGIFR 310

Query: 538  GEAKDVLDSQYEPYRRSFLQDLNQHAAVVLQGRVVDVELGD-TRSVAEALVRNKQDELSD 714
               K+  + Q E YRR+ LQDLN+HAAVVL+GR +DVE  D TR++AEAL R+K+    +
Sbjct: 311  DGTKESNELQSEHYRRTLLQDLNRHAAVVLEGRTIDVEREDSTRALAEALARSKR---GN 367

Query: 715  EKLNRNLEKQLSDRISRSAEIEDLQGPRDPAVALLSIKDPRDYFDSQQANALKALGDTGS 894
            E  + N  ++  DR  R AEIEDLQ P    +A LSIKD R+YFDSQQAN LKA  D+ +
Sbjct: 368  EGADNNANEERLDRTPRVAEIEDLQAPHCLPLAPLSIKDAREYFDSQQANTLKASRDSQA 427

Query: 895  ATEPLRSCVSAGQAYDSLRNVIFDIKEMGLDEPIMNQDIALKVLNGLTQSISSTKLHLGN 1074
            +   ++  +S  +AY S+R+ I +IK+MGL +PI+N ++ALKV +GLT +ISS K HLG 
Sbjct: 428  S---MKCSLSRQEAYGSVRDAISEIKDMGLSDPIVNPEVALKVYSGLTHNISSIKYHLGK 484

Query: 1075 SPNESVLDMLPKVTKEELLRHWAAVQELLKQFWSSYPLTTKYLYDKVNRVKDHMSKIYPK 1254
            +P E+VLD LP  TKE+LL HW ++QELLK FWSSYP+TT YLY KVNR+KD +S IYP+
Sbjct: 485  NPRETVLDRLPSATKEKLLYHWMSIQELLKHFWSSYPITTPYLYSKVNRLKDALSNIYPQ 544

Query: 1255 LQEMKESVQSDFRHQVSLLVHPMLQALDAAFAHYDADVQKRASKSGTRHNG 1407
            L+EMKES+ +D RHQVSLLV PM QALDAA  HYDAD+QKR++KSG + NG
Sbjct: 545  LEEMKESLPADLRHQVSLLVRPMQQALDAAIQHYDADLQKRSAKSGEKPNG 595


>ref|XP_007222888.1| hypothetical protein PRUPE_ppa003591mg [Prunus persica]
            gi|462419824|gb|EMJ24087.1| hypothetical protein
            PRUPE_ppa003591mg [Prunus persica]
          Length = 563

 Score =  521 bits (1342), Expect = e-145
 Identities = 272/465 (58%), Positives = 342/465 (73%), Gaps = 1/465 (0%)
 Frame = +1

Query: 1    RIKLLQEDSELQTMHKELVFGGTLTEAEFWSRKKELLDLNDSRRPKQRLALKNEM-WSVK 177
            R+KLLQEDSELQ +H + V  G LTE+EFW+ +K+LLD +   + KQR+  ++ M    K
Sbjct: 100  RMKLLQEDSELQKLHMQFVISGVLTESEFWATRKKLLDGDSRTKSKQRVGFRSSMILDTK 159

Query: 178  PLSDGQSNRVTFNLTPEIIHQIFAEKPAVRQAYLNFVPRKMTEKEFWTKYSRAQYLHSTR 357
            P++DG+ N+VTFNLTPEI +QIFA KPAV QA+L  VP KMTEK+FWTKY RA+YLHSTR
Sbjct: 160  PMTDGRMNKVTFNLTPEIKYQIFALKPAVHQAFLTLVPSKMTEKDFWTKYFRAEYLHSTR 219

Query: 358  NVVXXXXXXXXXXXXXVFLKRDDMLANEARRKIRRVDPTVDIEADEGDDYIHLPDHGLLH 537
            N V             +FLK D +LA+EARRKIRRVDPT+D+EAD+GDDY HLPDHG+  
Sbjct: 220  NAVAAAAEAAEDEELAIFLKEDAILASEARRKIRRVDPTLDMEADQGDDYTHLPDHGIFR 279

Query: 538  GEAKDVLDSQYEPYRRSFLQDLNQHAAVVLQGRVVDVELGDTRSVAEALVRNKQDELSDE 717
              +KDV + Q E YRR+  QDLN+  AVVLQGR VDV+L D R+VAEAL++++++  SDE
Sbjct: 280  DGSKDVTELQNELYRRTLSQDLNRQGAVVLQGRTVDVDLEDPRTVAEALMQSRRE--SDE 337

Query: 718  KLNRNLEKQLSDRISRSAEIEDLQGPRDPAVALLSIKDPRDYFDSQQANALKALGDTGSA 897
                + E++  DRI+R  EIEDLQ   D  VA L IKDPRDYFD+QQ NALK L D+ + 
Sbjct: 338  ----SAEQERLDRITRMTEIEDLQEHHDHPVAQLCIKDPRDYFDTQQVNALKTLDDSRTG 393

Query: 898  TEPLRSCVSAGQAYDSLRNVIFDIKEMGLDEPIMNQDIALKVLNGLTQSISSTKLHLGNS 1077
            TE  +  ++  +AY SLR  I  IK +GL    +  +IA+ VLNGLTQ+ISSTK  LG +
Sbjct: 394  TEQKKCSLTTEEAYGSLREAISKIKSIGLKNSTVAPEIAITVLNGLTQNISSTKYQLGKN 453

Query: 1078 PNESVLDMLPKVTKEELLRHWAAVQELLKQFWSSYPLTTKYLYDKVNRVKDHMSKIYPKL 1257
            P +SVLD LP  TKEELL HW ++QELL+ FWSSYP+TT YL  KV R+KD MS+IY +L
Sbjct: 454  PQDSVLDSLPNKTKEELLHHWISIQELLRHFWSSYPITTTYLSTKVGRLKDAMSQIYRQL 513

Query: 1258 QEMKESVQSDFRHQVSLLVHPMLQALDAAFAHYDADVQKRASKSG 1392
            +E+K   QSDFRHQVSLLV PM QALDAAF H+DAD+QKRA++SG
Sbjct: 514  EEIK---QSDFRHQVSLLVRPMHQALDAAFQHFDADLQKRAARSG 555


>ref|XP_007015592.1| BSD domain (BTF2-like transcription factors, Synapse-associated
            proteins and DOS2-like proteins), putative isoform 1
            [Theobroma cacao] gi|508785955|gb|EOY33211.1| BSD domain
            (BTF2-like transcription factors, Synapse-associated
            proteins and DOS2-like proteins), putative isoform 1
            [Theobroma cacao]
          Length = 646

 Score =  509 bits (1311), Expect = e-141
 Identities = 269/519 (51%), Positives = 348/519 (67%), Gaps = 50/519 (9%)
 Frame = +1

Query: 1    RIKLLQEDSELQTMHKELVFGGTLTEAEFWSRKKELLDLNDSRRPKQRLALKNEMWS-VK 177
            RIKLL+EDSELQ +HK+ V  G LTEAEFW+ +K+LLD   +++ KQRL  K+ M S +K
Sbjct: 126  RIKLLREDSELQKLHKQFVLSGVLTEAEFWATRKKLLDREANKKTKQRLGFKSAMISDIK 185

Query: 178  PLSDGQSNRVTFNLTPEIIHQIFAEKPAVRQAYLNFVPRKMTEKEFWTKYSRAQYLHSTR 357
            P +DG++N+VTFNLTPEII QIFAEKPAV +A+L +VP KM+E++FWTKY RA+YLHST+
Sbjct: 186  PSTDGRTNKVTFNLTPEIILQIFAEKPAVHRAFLTYVPNKMSERDFWTKYFRAEYLHSTK 245

Query: 358  NVVXXXXXXXXXXXXXVFLKRDDMLANEARRKIRRVDPTVDIEADEGDDYIHLPDHGLLH 537
            N V             VFLK+DD+LA+E+R KIRRVDPT+D++ADEGDDY HLPDHG+  
Sbjct: 246  NSVAAAAEAAEDEELAVFLKQDDILASESRSKIRRVDPTLDMDADEGDDYTHLPDHGIFR 305

Query: 538  GEAKDVLDSQYEPYRRSFLQDLNQHAAVVLQGRVVDVELGDTRSVAEALVRNKQDELSDE 717
              +K+V +S+ E YRR+  QD+N+HAAVVL+GR VDVEL DTRSVAEAL R+KQ+  +  
Sbjct: 306  DGSKEVTESENELYRRTLSQDINRHAAVVLEGRAVDVELEDTRSVAEALARSKQESSTKG 365

Query: 718  KLNRNLEKQLSDRISRSAEIEDLQGPRDPAVALLSIKDPRDYFDSQQANALKALGDTGSA 897
            +   +  ++  DR+SR  EIEDLQ P +  +A L IKDPRDYFDSQQ NAL+  GD  + 
Sbjct: 366  ESYGDTSRERLDRVSRMTEIEDLQAPNNLPLAPLCIKDPRDYFDSQQVNALRTSGDELAG 425

Query: 898  TEPLRSCVSAGQAYDSLRNVIFDIKEMGLDEPIMNQDIALKVLNGLTQSISSTKLHLGNS 1077
            TE ++  +S+ + Y SLR  I  IK MGL +PI+  ++A +V + LTQSIS+TK ++G +
Sbjct: 426  TEQIKCSLSSQEVYGSLRESISVIKAMGLKDPIVKPEVAHQVFDALTQSISTTKYNIGKN 485

Query: 1078 PNESVLDMLPKVTKEELLRHWAAVQELLKQFWSSYPLTTKYLYDKVNRVKDHMSKIYPKL 1257
            P ESVLD LPK  KEELL HW ++ ELL+ FW+SYP+TT YLY KVN         Y KL
Sbjct: 486  PQESVLDRLPKKIKEELLHHWTSILELLRHFWASYPITTSYLYTKVNAALVLTLLSYQKL 545

Query: 1258 Q-------------------------------------------------EMKESVQSDF 1290
            +                                                 E+K SV SD 
Sbjct: 546  EAGKQTEGCHVTYLSTARVVLSNYPQVPFISSLLFYLLGSSDAKASYVWMEIKGSVPSDL 605

Query: 1291 RHQVSLLVHPMLQALDAAFAHYDADVQKRASKSGTRHNG 1407
            RHQVSLL+ PM QALDAA  HY+AD+QKR+++SG R NG
Sbjct: 606  RHQVSLLIRPMHQALDAAIQHYEADMQKRSARSGERPNG 644


>ref|XP_004496077.1| PREDICTED: probable RNA polymerase II transcription factor B subunit
            1-1-like [Cicer arietinum]
          Length = 586

 Score =  508 bits (1307), Expect = e-141
 Identities = 258/470 (54%), Positives = 344/470 (73%), Gaps = 1/470 (0%)
 Frame = +1

Query: 1    RIKLLQEDSELQTMHKELVFGGTLTEAEFWSRKKELLDLNDSRRPKQRLALKNEM-WSVK 177
            RIKLLQEDS+LQ +HK+LV  G LTE+EFW+ KK+LLD ++SR+ KQR+  KN + +  K
Sbjct: 122  RIKLLQEDSKLQKLHKDLVASGKLTESEFWATKKKLLDQDESRKLKQRIGFKNSLIFDTK 181

Query: 178  PLSDGQSNRVTFNLTPEIIHQIFAEKPAVRQAYLNFVPRKMTEKEFWTKYSRAQYLHSTR 357
            P SDG+ N+V F LTPEI +QIFA KPAV QA+LNFVP KM+E +FW KY +A+Y+HST+
Sbjct: 182  PTSDGRINQVKFQLTPEIKYQIFALKPAVHQAFLNFVPSKMSEVDFWNKYFKAEYIHSTK 241

Query: 358  NVVXXXXXXXXXXXXXVFLKRDDMLANEARRKIRRVDPTVDIEADEGDDYIHLPDHGLLH 537
            N +             VFLK D++L NEAR+K+RRVDPT+D+EAD+GDDY HLPDHG+  
Sbjct: 242  NTIAAAAEAAEDEDLAVFLKDDEILENEARKKVRRVDPTLDMEADQGDDYTHLPDHGIFR 301

Query: 538  GEAKDVLDSQYEPYRRSFLQDLNQHAAVVLQGRVVDVELGDTRSVAEALVRNKQDELSDE 717
              +K+  ++Q   YRR+ LQDLN+ + VVL+G+ +D+++   R+VAE L R KQ+     
Sbjct: 302  DGSKETAEAQNTFYRRTLLQDLNRQSEVVLEGKTLDMDMEHPRTVAEVLARRKQES---- 357

Query: 718  KLNRNLEKQLSDRISRSAEIEDLQGPRDPAVALLSIKDPRDYFDSQQANALKALGDTGSA 897
              +  +E++  +RIS+  +IEDLQ   D   A L IKDPRDYFDSQQ NALK+L D+ + 
Sbjct: 358  --DGVIEEERRNRISKMTQIEDLQAQDDHRFAPLCIKDPRDYFDSQQVNALKSLDDSLAG 415

Query: 898  TEPLRSCVSAGQAYDSLRNVIFDIKEMGLDEPIMNQDIALKVLNGLTQSISSTKLHLGNS 1077
             E +R  + + +AY SLR  I  IK +GL +P+++ ++A KVLNGLT++ISSTK HLG S
Sbjct: 416  KEQIRCNLGSEEAYGSLRESISKIKAIGLMDPLLSPEVAFKVLNGLTKNISSTKSHLGKS 475

Query: 1078 PNESVLDMLPKVTKEELLRHWAAVQELLKQFWSSYPLTTKYLYDKVNRVKDHMSKIYPKL 1257
              ESVLD+LP  TKE+LL HW   QELL+ FWSSYP+TT+ L +K  R+KD +S+IY KL
Sbjct: 476  SQESVLDILPNTTKEKLLDHWVCSQELLRHFWSSYPVTTQNLVNKTKRMKDAISQIYSKL 535

Query: 1258 QEMKESVQSDFRHQVSLLVHPMLQALDAAFAHYDADVQKRASKSGTRHNG 1407
            +E+K S +SD RHQVSL+VHPM QALDAA  HYDADV+KR ++ GT+ NG
Sbjct: 536  EEIKVSAKSDLRHQVSLVVHPMQQALDAALLHYDADVRKRNAR-GTKPNG 584


>ref|XP_002530618.1| TFIIH basal transcription factor complex subunit, putative [Ricinus
            communis] gi|223529828|gb|EEF31761.1| TFIIH basal
            transcription factor complex subunit, putative [Ricinus
            communis]
          Length = 597

 Score =  501 bits (1289), Expect = e-139
 Identities = 265/473 (56%), Positives = 348/473 (73%), Gaps = 4/473 (0%)
 Frame = +1

Query: 1    RIKLLQEDSELQTMHKELVFGGTLTEAEFWSRKKELLDLNDSRRPKQRLALKNEMWS-VK 177
            R+ LL+E+ ELQ +HK+ V    LT++EFW+ +K+LL+   SR+ KQR+ LK+ M +  K
Sbjct: 126  RMNLLRENLELQKLHKQFVSDRVLTDSEFWATRKKLLNGEFSRKSKQRVGLKSVMLADSK 185

Query: 178  PLSDGQSNRVTFNLTPEIIHQIFAEKPAVRQAYLNFVPRKMTEKEFWTKYSRAQYLHSTR 357
            PL DGQ+N+VTFNLTPEI+ +IFAEKPAV QAYL+ VP KM+E++FWTKY RA+YL  +R
Sbjct: 186  PLIDGQTNKVTFNLTPEIVREIFAEKPAVHQAYLSLVPNKMSERDFWTKYCRAEYLQRSR 245

Query: 358  NVVXXXXXXXXXXXXXVFLKRDDMLANEARRKIRRVDPTVDIEADEGDDYIHLPDHGLLH 537
            N+              +FLK DD+LA+E R+KIR VDPT+D+EAD+GDDY HLPDHG++ 
Sbjct: 246  NIHAAAAEAAEDEELALFLKPDDILASETRQKIRCVDPTLDMEADQGDDYTHLPDHGIVR 305

Query: 538  GEAKDVLDSQYEPYRRSFLQDLNQHAAVVLQGRVVDVE-LGDTRSVAEALVRNKQD-ELS 711
              +KDV++SQ+EPYRR+ LQDLN+HAAVVL+G  +D E L DT++VA+AL R+K+  +  
Sbjct: 306  DGSKDVIESQHEPYRRTLLQDLNRHAAVVLEGTAIDDEQLQDTKAVADALARSKRGIKTI 365

Query: 712  DEKLNRNLEKQLSDRISRSAEIEDLQGPRDPAVALLSIKDPRDYFDSQQANALKALGDTG 891
            + + + N  ++ S+RIS+  EIEDLQG  D  +A L IKDPRDYFDSQQA+ALK   D  
Sbjct: 366  NREADGNANQERSNRISQMMEIEDLQGSNDHHLAPLCIKDPRDYFDSQQASALKNSRDIP 425

Query: 892  SATEPLRSCVSAGQAYDSLRNVIFDIKEMGLDEPIMNQDIALKVLNGLTQSISSTKLHLG 1071
            S TE  R  +S+ +AY SLR+ I   K MGL++PI+  +IA KVL+ LT +ISSTK HLG
Sbjct: 426  SGTEAARCSLSSQEAYASLRDSITQTKAMGLNDPIVKPEIATKVLSILTHNISSTKYHLG 485

Query: 1072 NSPNESVLDMLPKVTKEELLRHWAAVQELLKQFWSSYPLTTKYLYDKVNRVKDHMSKIYP 1251
             +  ESVLD LP   KEELL HW +++ELL+ +WSSYP+TT YLY KV+R+KD MSKI  
Sbjct: 486  KNSRESVLDRLPNTIKEELLHHWMSIEELLRHYWSSYPITTAYLYAKVSRLKDAMSKIDS 545

Query: 1252 KLQEMKESVQSDFR-HQVSLLVHPMLQALDAAFAHYDADVQKRASKSGTRHNG 1407
            +LQEMKESVQSD   H  SL + P   AL+AA  HYDAD+QKR++KS  R NG
Sbjct: 546  QLQEMKESVQSDLXFHATSLGIVP---ALEAAMQHYDADLQKRSAKSAERPNG 595


>ref|XP_006589332.1| PREDICTED: probable RNA polymerase II transcription factor B subunit
            1-3-like isoform X1 [Glycine max]
            gi|571483735|ref|XP_006589333.1| PREDICTED: probable RNA
            polymerase II transcription factor B subunit 1-3-like
            isoform X2 [Glycine max]
          Length = 587

 Score =  499 bits (1284), Expect = e-138
 Identities = 254/470 (54%), Positives = 340/470 (72%), Gaps = 1/470 (0%)
 Frame = +1

Query: 1    RIKLLQEDSELQTMHKELVFGGTLTEAEFWSRKKELLDLNDSRRPKQRLALKNEM-WSVK 177
            RIKLLQEDS+LQ +HKELV  G LTE+EFW+ KK+LLD ++SR+ KQR+  KN + +  K
Sbjct: 123  RIKLLQEDSKLQRLHKELVASGKLTESEFWATKKKLLDQDESRKLKQRIGFKNSLIFDTK 182

Query: 178  PLSDGQSNRVTFNLTPEIIHQIFAEKPAVRQAYLNFVPRKMTEKEFWTKYSRAQYLHSTR 357
            P+SDG+ N+V F LTPEI +QIFA KPAV QA+LNFVP KM E +FW KY +A+YLHST+
Sbjct: 183  PMSDGRINQVKFQLTPEIKYQIFALKPAVHQAFLNFVPSKMNEVDFWNKYFKAEYLHSTK 242

Query: 358  NVVXXXXXXXXXXXXXVFLKRDDMLANEARRKIRRVDPTVDIEADEGDDYIHLPDHGLLH 537
            N V             VFLK D++L  EAR+K+RRVDPT+D+EAD+GDDY HLPDHG+  
Sbjct: 243  NAVAAAAEAAEDEDLAVFLKDDEILEIEARKKVRRVDPTLDMEADQGDDYTHLPDHGIFR 302

Query: 538  GEAKDVLDSQYEPYRRSFLQDLNQHAAVVLQGRVVDVELGDTRSVAEALVRNKQDELSDE 717
              +KD+ ++Q   Y+R+ LQDLN+  AVVL+G+ +D+E+   R+VAE L R KQ+     
Sbjct: 303  DGSKDISEAQNSLYKRTLLQDLNRQGAVVLEGKTLDMEMEHPRTVAEILARRKQE----- 357

Query: 718  KLNRNLEKQLSDRISRSAEIEDLQGPRDPAVALLSIKDPRDYFDSQQANALKALGDTGSA 897
              +  ++++  +RIS+   IEDLQ   +   A L IKDPRDYFDSQQANA+K L D+ + 
Sbjct: 358  -CDGVVDEERRNRISKMTPIEDLQAQDNHPYAPLCIKDPRDYFDSQQANAVKTLDDSQAG 416

Query: 898  TEPLRSCVSAGQAYDSLRNVIFDIKEMGLDEPIMNQDIALKVLNGLTQSISSTKLHLGNS 1077
             E ++  + + +AYDSLR  I  IK  GL +P+ + D+ALKVLNGLT++I+STK HLG S
Sbjct: 417  MEQMKCSLGSEEAYDSLRASISKIKTTGLRDPLFSPDVALKVLNGLTKNITSTKYHLGKS 476

Query: 1078 PNESVLDMLPKVTKEELLRHWAAVQELLKQFWSSYPLTTKYLYDKVNRVKDHMSKIYPKL 1257
              ESVLD+LP  TKE+LL HW   QELL+ FWSSYP++T+ L  K  R+KD +S+IY KL
Sbjct: 477  SQESVLDILPNSTKEKLLDHWVCSQELLRHFWSSYPVSTQNLVSKTRRLKDSISQIYSKL 536

Query: 1258 QEMKESVQSDFRHQVSLLVHPMLQALDAAFAHYDADVQKRASKSGTRHNG 1407
            +++K S +SD RH VSL+VHPM QAL+AA  HY+AD++KR ++ G + NG
Sbjct: 537  EDIKVSAESDLRHHVSLVVHPMQQALNAALLHYEADIRKRNAR-GQKPNG 585


>ref|XP_007144178.1| hypothetical protein PHAVU_007G134900g [Phaseolus vulgaris]
            gi|561017368|gb|ESW16172.1| hypothetical protein
            PHAVU_007G134900g [Phaseolus vulgaris]
          Length = 588

 Score =  498 bits (1283), Expect = e-138
 Identities = 255/470 (54%), Positives = 341/470 (72%), Gaps = 1/470 (0%)
 Frame = +1

Query: 1    RIKLLQEDSELQTMHKELVFGGTLTEAEFWSRKKELLDLNDSRRPKQRLALKNEM-WSVK 177
            RIKLLQEDS+LQ +HKELV  G LTE+EFW+ KK+LLD ++SR+ KQR+  KN + +  K
Sbjct: 123  RIKLLQEDSKLQRLHKELVASGKLTESEFWATKKKLLDQDESRKLKQRIGFKNSLIFDTK 182

Query: 178  PLSDGQSNRVTFNLTPEIIHQIFAEKPAVRQAYLNFVPRKMTEKEFWTKYSRAQYLHSTR 357
            P+SDG+ N+V F LTPEI +QIF  KPAV QA+LNFVP KM E +FW KY +A+YLHST+
Sbjct: 183  PMSDGRINQVKFQLTPEIKYQIFTLKPAVHQAFLNFVPSKMNEVDFWNKYFKAEYLHSTK 242

Query: 358  NVVXXXXXXXXXXXXXVFLKRDDMLANEARRKIRRVDPTVDIEADEGDDYIHLPDHGLLH 537
            N V             VFLK D++L  EAR+K+RRVDPT+D+EAD+GDDY HLPDHG+  
Sbjct: 243  NAVAAAAEAAEDEDLAVFLKDDEILEIEARKKVRRVDPTLDMEADQGDDYTHLPDHGIFR 302

Query: 538  GEAKDVLDSQYEPYRRSFLQDLNQHAAVVLQGRVVDVELGDTRSVAEALVRNKQDELSDE 717
              +K++ ++Q   Y+R+ LQDLN+  AVVL+G+ +D+E+ + R+VAE L R KQ+  SDE
Sbjct: 303  DGSKEISEAQNSLYKRTLLQDLNRQGAVVLEGKTLDMEMENPRTVAEILARRKQE--SDE 360

Query: 718  KLNRNLEKQLSDRISRSAEIEDLQGPRDPAVALLSIKDPRDYFDSQQANALKALGDTGSA 897
             +    +++  +RIS+   IEDLQ   D   A L IKDPRDYFD QQANA+K L D+   
Sbjct: 361  VVG---DEERRNRISKMTPIEDLQSQDDHRYAPLCIKDPRDYFDFQQANAVKTLDDSQPG 417

Query: 898  TEPLRSCVSAGQAYDSLRNVIFDIKEMGLDEPIMNQDIALKVLNGLTQSISSTKLHLGNS 1077
             E +   + + +AY SLR  I  I+  GL +P+ + ++ALKVL+GLT++ISS+K HLG +
Sbjct: 418  MEQMMCSLGSEEAYGSLRASISKIQTTGLRDPLFSPEVALKVLHGLTKNISSSKYHLGKT 477

Query: 1078 PNESVLDMLPKVTKEELLRHWAAVQELLKQFWSSYPLTTKYLYDKVNRVKDHMSKIYPKL 1257
              ESVLD+LP  TKE+LL HW   QELL+ +WSSYP+TT+ L +K  R+KD +S+IY KL
Sbjct: 478  SQESVLDILPNTTKEKLLDHWVCSQELLRHYWSSYPVTTQNLVNKTRRLKDSISQIYSKL 537

Query: 1258 QEMKESVQSDFRHQVSLLVHPMLQALDAAFAHYDADVQKRASKSGTRHNG 1407
            +E+K S QSD RHQVSL+VHPM QALDAA  HYDAD++KR ++ G++ NG
Sbjct: 538  EEIKVSAQSDLRHQVSLVVHPMQQALDAALLHYDADIRKRNAR-GSKSNG 586


>ref|XP_006307068.1| hypothetical protein CARUB_v10008654mg [Capsella rubella]
            gi|482575779|gb|EOA39966.1| hypothetical protein
            CARUB_v10008654mg [Capsella rubella]
          Length = 593

 Score =  494 bits (1273), Expect = e-137
 Identities = 256/472 (54%), Positives = 342/472 (72%), Gaps = 3/472 (0%)
 Frame = +1

Query: 1    RIKLLQEDSELQTMHKELVFGGTLTEAEFWSRKKELLDLNDSRRPKQRLALKNEMWS-VK 177
            R KLL+E+SELQ +HK+ V    LTE EFW+ +K+LL  +  R+ KQ+L LK+ M S +K
Sbjct: 126  RFKLLKENSELQRLHKQFVESKVLTEDEFWATRKKLLGKDSIRKSKQQLGLKSMMVSGIK 185

Query: 178  PLSDGQSNRVTFNLTPEIIHQIFAEKPAVRQAYLNFVPRKMTEKEFWTKYSRAQYLHSTR 357
            P +DG++NRVTFNLTPEII QIFAEKPAVRQA++++VP KMTEK+FWTKY RA+YL+ST+
Sbjct: 186  PSTDGRTNRVTFNLTPEIIFQIFAEKPAVRQAFISYVPSKMTEKDFWTKYFRAEYLYSTK 245

Query: 358  NVVXXXXXXXXXXXXXVFLKRDDMLANEARRKIRRVDPTVDIEADEGDDYIHLPDHGLLH 537
            N               VFLK D++LA E R+KIRRVDPT+D+EADEGDDY HL DHG+  
Sbjct: 246  NTAVAAAEAAEDEELAVFLKPDEILARETRQKIRRVDPTLDMEADEGDDYTHLMDHGIQR 305

Query: 538  GEAKDVLDSQYEPYRRSFLQDLNQHAAVVLQGRVVDVELGDTRSVAEALVRNKQDELSDE 717
               +DV++ Q E ++RS LQDLN+HAAVVL+GR +DV+  DTR VAEAL R KQ   +D 
Sbjct: 306  DGTRDVVEPQNEQFKRSLLQDLNRHAAVVLEGRSIDVDSEDTRIVAEALTRVKQVSKADG 365

Query: 718  KLNRNLEKQLSDRISRSAEIEDLQGPRDPAVALLSIKDPRDYFDSQQANALKALGDTGSA 897
            +  ++  ++  +R+SR A +EDLQ P++  +A LSIKDPRDYF+SQQ N L A       
Sbjct: 366  ETGKDANQERLERMSRVAGMEDLQAPQNFPLAPLSIKDPRDYFESQQGNVLNA----PRG 421

Query: 898  TEPLRSCVSAGQAYDSLRNVIFDIKEMGLDEPIMNQDIALKVLNGLTQSISSTKLHLGNS 1077
            T+ L+  V   +A+  L+  I +I+  GL +P++  +++ +V + LT++IS+ K  +G +
Sbjct: 422  TKGLKRNVH--EAFGLLKESIVEIRARGLSDPLIKPEVSFEVFSSLTRTISTAKNIIGKN 479

Query: 1078 PNESVLDMLPKVTKEELLRHWAAVQELLKQFWSSYPLTTKYLYDKVNRVKDHMSKIYPKL 1257
            P ES LD LPK TK+E+L HW ++QELL+ FWSSYP+TT YL+ KV ++KD MS  Y KL
Sbjct: 480  PRESFLDRLPKSTKDEVLHHWTSIQELLRHFWSSYPITTTYLHTKVGKLKDAMSNTYSKL 539

Query: 1258 QEMKESVQSDFRHQVSLLVHPMLQALDAAFAHYDADVQKRASKS--GTRHNG 1407
            + MKESVQSD RHQ+SLLV PM QALDAAF HY+AD+Q+R +KS  G R NG
Sbjct: 540  EAMKESVQSDLRHQISLLVRPMQQALDAAFQHYEADLQRRTAKSSGGERPNG 591


>ref|NP_175971.3| probable RNA polymerase II transcription factor B subunit 1-1
            [Arabidopsis thaliana]
            gi|122215373|sp|Q3ECP0.1|TFB1A_ARATH RecName:
            Full=Probable RNA polymerase II transcription factor B
            subunit 1-1; AltName: Full=General transcription and DNA
            repair factor IIH subunit TFB1-1; Short=AtTFB1-1;
            Short=TFIIH subunit TFB1-1 gi|110741140|dbj|BAE98663.1|
            hypothetical protein [Arabidopsis thaliana]
            gi|332195172|gb|AEE33293.1| probable RNA polymerase II
            transcription factor B subunit 1-1 [Arabidopsis thaliana]
          Length = 591

 Score =  494 bits (1272), Expect = e-137
 Identities = 255/470 (54%), Positives = 337/470 (71%), Gaps = 1/470 (0%)
 Frame = +1

Query: 1    RIKLLQEDSELQTMHKELVFGGTLTEAEFWSRKKELLDLNDSRRPKQRLALKNEMWS-VK 177
            R KLL+E+SELQ +HK+ V    LTE EFW+ +K+LL  +  R+ KQ+L LK+ M S +K
Sbjct: 126  RFKLLRENSELQRLHKQFVESKVLTEDEFWATRKKLLGKDSIRKSKQQLGLKSMMVSGIK 185

Query: 178  PLSDGQSNRVTFNLTPEIIHQIFAEKPAVRQAYLNFVPRKMTEKEFWTKYSRAQYLHSTR 357
            P +DG++NRVTFNLTPEII QIFAEKPAVRQA++N+VP KMTEK+FWTKY RA+YL+ST+
Sbjct: 186  PSTDGRTNRVTFNLTPEIIFQIFAEKPAVRQAFINYVPSKMTEKDFWTKYFRAEYLYSTK 245

Query: 358  NVVXXXXXXXXXXXXXVFLKRDDMLANEARRKIRRVDPTVDIEADEGDDYIHLPDHGLLH 537
            N               VFLK D++LA E R KIRRVDPT+D+EAD+GDDY HL DHG+  
Sbjct: 246  NTAVAAAEAAEDEELAVFLKPDEILARETRHKIRRVDPTLDMEADQGDDYTHLMDHGIQR 305

Query: 538  GEAKDVLDSQYEPYRRSFLQDLNQHAAVVLQGRVVDVELGDTRSVAEALVRNKQDELSDE 717
                DV++ Q + ++RS LQDLN+HAAVVL+GR +DVE  DTR VAEAL R KQ   +D 
Sbjct: 306  DGTMDVVEPQNDQFKRSLLQDLNRHAAVVLEGRSIDVESEDTRIVAEALTRVKQVSKADG 365

Query: 718  KLNRNLEKQLSDRISRSAEIEDLQGPRDPAVALLSIKDPRDYFDSQQANALKALGDTGSA 897
            +  ++  ++  +R+SR A +EDLQ P++  +A LSIKDPRDYF+SQQ N L    +    
Sbjct: 366  ETTKDANQERLERMSRVAGMEDLQAPQNFPLAPLSIKDPRDYFESQQGNVL----NVPRG 421

Query: 898  TEPLRSCVSAGQAYDSLRNVIFDIKEMGLDEPIMNQDIALKVLNGLTQSISSTKLHLGNS 1077
             + L+  V   +AY  L+  I +I+  GL +P++  +++ +V + LT++I++ K   G +
Sbjct: 422  AKGLKRNVH--EAYGLLKESILEIRATGLSDPLIKPEVSFEVFSSLTRTIATAKNINGKN 479

Query: 1078 PNESVLDMLPKVTKEELLRHWAAVQELLKQFWSSYPLTTKYLYDKVNRVKDHMSKIYPKL 1257
            P ES LD LPK TK+E+L HW ++QELLK FWSSYP+TT YL+ KV ++KD MS  Y KL
Sbjct: 480  PRESFLDRLPKSTKDEVLHHWTSIQELLKHFWSSYPITTTYLHTKVGKLKDAMSNTYSKL 539

Query: 1258 QEMKESVQSDFRHQVSLLVHPMLQALDAAFAHYDADVQKRASKSGTRHNG 1407
            + MKESVQSD RHQVSLLV PM QALDAAF HY+ D+Q+R +KSG R NG
Sbjct: 540  EAMKESVQSDLRHQVSLLVRPMQQALDAAFHHYEVDLQRRTAKSGERPNG 589


>ref|XP_002310512.2| transcription factor-related family protein [Populus trichocarpa]
            gi|550334091|gb|EEE90962.2| transcription factor-related
            family protein [Populus trichocarpa]
          Length = 603

 Score =  493 bits (1270), Expect = e-137
 Identities = 259/475 (54%), Positives = 346/475 (72%), Gaps = 6/475 (1%)
 Frame = +1

Query: 1    RIKLLQEDSELQTMHKELVFGGTLTEAEFWSRKKELLDLNDSRRPKQRLALKNEMWS-VK 177
            R+ +LQE+SELQ +HK  V  G LTEAEFW+ +K+LL  N S++ KQR  LK+ + S  K
Sbjct: 127  RMNMLQENSELQNLHKRFVSDGILTEAEFWATRKKLLGGNFSKKSKQRTGLKSFVLSDTK 186

Query: 178  PLSDGQSNRVTFNLTPEIIHQIFAEKPAVRQAYLNFVPRKMTEKEFWTKYSRAQYLHSTR 357
            P +DG++N+VTF LTPEI+ ++FAEKPAV +AYL+ VP+KM+E++FW+KY RA+YL   +
Sbjct: 187  PSTDGRTNKVTFTLTPEIVREVFAEKPAVHRAYLDLVPKKMSERDFWSKYCRAEYLQHAK 246

Query: 358  NV---VXXXXXXXXXXXXXVFLKRDDMLANEARRKIRRVDPTVDIEADEGDDYIHLPDHG 528
            N                  +FLK DD+LA+E RRKIR VDPT+++EADEGDDY HLPDHG
Sbjct: 247  NANAAAAAAAEAAEDEELALFLKPDDILASETRRKIRCVDPTLNMEADEGDDYTHLPDHG 306

Query: 529  LLHGEAKDVLDSQYEPYRRSFLQDLNQHAAVVLQGRVVDVE-LGDTRSVAEALVRNKQDE 705
            ++   +K++ +SQ+E Y R+  Q+LN+HAAVVLQG  +D E L DT++VAEAL ++KQ +
Sbjct: 307  IVRDGSKEITESQHELYIRTLSQELNRHAAVVLQGTPIDEEQLKDTQTVAEALKQSKQGQ 366

Query: 706  -LSDEKLNRNLEKQLSDRISRSAEIEDLQGPRDPAVALLSIKDPRDYFDSQQANALKALG 882
              S+E+ + N  +    RIS+  EI+DLQ   D  +A LSIKDPRDYFDSQQA ALK   
Sbjct: 367  NASNEETDMNANQDRLSRISKMMEIDDLQASSDLPLAPLSIKDPRDYFDSQQATALKNSR 426

Query: 883  DTGSATEPLRSCVSAGQAYDSLRNVIFDIKEMGLDEPIMNQDIALKVLNGLTQSISSTKL 1062
            DT   T+P++  +SA ++Y SLR+ I  IK  GL +PI+  ++A+KVL+ LT +ISSTK 
Sbjct: 427  DTSIGTDPVKRILSAEESYASLRDSISLIKTTGLVDPIIKPEVAVKVLSVLTHNISSTKY 486

Query: 1063 HLGNSPNESVLDMLPKVTKEELLRHWAAVQELLKQFWSSYPLTTKYLYDKVNRVKDHMSK 1242
              G +   SVLD LP   KEELL HW ++QELLK +WSSYP+TT YLY KV+R+KD MSK
Sbjct: 487  DTGKNHGLSVLDTLPNTIKEELLYHWTSLQELLKHYWSSYPITTTYLYTKVSRLKDAMSK 546

Query: 1243 IYPKLQEMKESVQSDFRHQVSLLVHPMLQALDAAFAHYDADVQKRASKSGTRHNG 1407
            I  +LQE+KESVQSD RHQV+LL+ PM QAL+AA  HYDA++QKR+++SG R NG
Sbjct: 547  IDSQLQELKESVQSDLRHQVTLLLRPMQQALEAAMQHYDAELQKRSARSGDRSNG 601


>ref|XP_002894525.1| hypothetical protein ARALYDRAFT_892577 [Arabidopsis lyrata subsp.
            lyrata] gi|297340367|gb|EFH70784.1| hypothetical protein
            ARALYDRAFT_892577 [Arabidopsis lyrata subsp. lyrata]
          Length = 592

 Score =  493 bits (1268), Expect = e-136
 Identities = 256/471 (54%), Positives = 339/471 (71%), Gaps = 2/471 (0%)
 Frame = +1

Query: 1    RIKLLQEDSELQTMHKELVFGGTLTEAEFWSRKKELLDLNDSRRPKQRLALKNEMWS-VK 177
            R KLL+E+SELQ +HK+ V    LTE EFW+ +K+LL  +  R+ KQ++ LK+ M S +K
Sbjct: 126  RFKLLRENSELQRLHKQFVESKVLTEDEFWATRKKLLGKDSIRKSKQQVGLKSMMVSGIK 185

Query: 178  PLSDGQSNRVTFNLTPEIIHQIFAEKPAVRQAYLNFVPRKMTEKEFWTKYSRAQYLHSTR 357
            P +DG++NRVTFNLTPEII QIFAEKPAVRQA++N+VP KMTEK+FWTKY RA+YL+ST+
Sbjct: 186  PSTDGRTNRVTFNLTPEIIFQIFAEKPAVRQAFINYVPSKMTEKDFWTKYFRAEYLYSTK 245

Query: 358  NVVXXXXXXXXXXXXXVFLKRDDMLANEARRKIRRVDPTVDIEADEGDDYIHLPDHGLLH 537
            N               VFLK D++LA E R+KIRRVDPT+D+EAD+GDDY HL DHG+  
Sbjct: 246  NTAVAAAEAAEDEELAVFLKPDEILARETRQKIRRVDPTLDMEADQGDDYTHLMDHGIQR 305

Query: 538  GEAKDVLDSQYEPYRRSFLQDLNQHAAVVLQGRVVDVELGDTRSVAEALVRNKQDELSDE 717
                DV++ Q + +RRS LQDLN+HAAVVL+GR +DVE  DTR VAEAL R KQ   +D 
Sbjct: 306  DGTMDVVEPQNDQFRRSLLQDLNRHAAVVLEGRSIDVESEDTRIVAEALTRVKQVSKADG 365

Query: 718  KLNRNLEKQLSDRISRSAEIEDLQGPRDPAVALLSIKDPRDYFDSQQANALKALGDTGSA 897
            +  ++   +  +R+SR A +EDLQ P++  +A LSIKDPRDYF+SQQ N L    +    
Sbjct: 366  ETTKDANLERLERMSRLAGMEDLQAPQNFPLAPLSIKDPRDYFESQQGNVL----NVPRG 421

Query: 898  TEPLRSCVSAGQAYDSLRNVIFDIKEMGLDEPIMNQDIALKVLNGLTQSISSTKLHLGNS 1077
             + L+  V   +AY  L+  I +I+  GL +P++  +++ +V + LT++IS+ K  +G +
Sbjct: 422  AKGLKRNVH--EAYGLLKESILEIRATGLSDPLIRPEVSFEVFSSLTRTISTAKNIIGKN 479

Query: 1078 PNESVLDMLPKVTKEELLRHWAAVQELLKQFWSSYPLTTKYLYDKVNRVKDHMSKIYPKL 1257
            P ES LD LPK TK+E+L HW ++QELL+ FWSSYP+TT YL+ KV ++KD MS  Y KL
Sbjct: 480  PRESFLDRLPKSTKDEVLHHWTSIQELLRHFWSSYPITTTYLHTKVGKLKDAMSNTYSKL 539

Query: 1258 QEMKESVQSDFRHQVSLLVHPMLQALDAAFAHYDADVQKRASKS-GTRHNG 1407
            + MKESVQSD RHQVSLLV PM QALDAAF HY+AD+Q+R +KS G R NG
Sbjct: 540  EAMKESVQSDLRHQVSLLVRPMQQALDAAFQHYEADLQRRTAKSGGERPNG 590


>ref|XP_003591640.1| General transcription factor IIH subunit [Medicago truncatula]
            gi|355480688|gb|AES61891.1| General transcription factor
            IIH subunit [Medicago truncatula]
          Length = 586

 Score =  491 bits (1263), Expect = e-136
 Identities = 252/470 (53%), Positives = 335/470 (71%), Gaps = 1/470 (0%)
 Frame = +1

Query: 1    RIKLLQEDSELQTMHKELVFGGTLTEAEFWSRKKELLDLNDSRRPKQRLALKNEM-WSVK 177
            R+KLL EDS+L+ +H ELV    LTE+EFW+ KK+LLD ++SR+ KQR+  KN + +  K
Sbjct: 123  RMKLLGEDSKLKKIHMELVMSDKLTESEFWATKKKLLDQDESRKLKQRIGFKNSLIFDTK 182

Query: 178  PLSDGQSNRVTFNLTPEIIHQIFAEKPAVRQAYLNFVPRKMTEKEFWTKYSRAQYLHSTR 357
            P SDG+ N+V F LTPEI +QIFA KPAV QA+LNFVP KM+E +FW KY +A+YLHST+
Sbjct: 183  PTSDGRINQVKFQLTPEIKYQIFALKPAVHQAFLNFVPSKMSEVDFWNKYFKAEYLHSTK 242

Query: 358  NVVXXXXXXXXXXXXXVFLKRDDMLANEARRKIRRVDPTVDIEADEGDDYIHLPDHGLLH 537
            N +             VFLK D++L NEAR+K+RRVDPT+D+EAD+GDDY HLPDHG+  
Sbjct: 243  NAIAAAAEAAEDEDLAVFLKDDEILENEARKKVRRVDPTLDMEADQGDDYTHLPDHGIFR 302

Query: 538  GEAKDVLDSQYEPYRRSFLQDLNQHAAVVLQGRVVDVELGDTRSVAEALVRNKQDELSDE 717
              +K+  ++Q   YRR+ LQDLN+ + VVL+G+ +D+++   R+  EAL R K +     
Sbjct: 303  DGSKETSEAQNTLYRRTLLQDLNRQSEVVLEGKTLDIDMEHPRTAVEALARRKHESDGVV 362

Query: 718  KLNRNLEKQLSDRISRSAEIEDLQGPRDPAVALLSIKDPRDYFDSQQANALKALGDTGSA 897
            +  RN       RIS+ A+IEDLQ   D   A L IKDPRDYFDSQQANA+K L D+ S 
Sbjct: 363  EERRN-------RISKMAQIEDLQAQDDHPFAPLCIKDPRDYFDSQQANAVKTLDDSLSG 415

Query: 898  TEPLRSCVSAGQAYDSLRNVIFDIKEMGLDEPIMNQDIALKVLNGLTQSISSTKLHLGNS 1077
             E +R  + + +AY SLR  I +IK MGL +P+++ ++A KVL+ LT++ISSTK +LG S
Sbjct: 416  KEKIRCNLGSEEAYGSLRESISNIKTMGLRDPLLSHEVAFKVLSELTKNISSTKSNLGKS 475

Query: 1078 PNESVLDMLPKVTKEELLRHWAAVQELLKQFWSSYPLTTKYLYDKVNRVKDHMSKIYPKL 1257
              ESVLD+LP  TKE+LL HW   QELL+ FWSSYP+T + L DK  R+KD +S+IY KL
Sbjct: 476  SQESVLDILPNTTKEKLLDHWVCSQELLRHFWSSYPVTKQSLVDKARRLKDAISQIYSKL 535

Query: 1258 QEMKESVQSDFRHQVSLLVHPMLQALDAAFAHYDADVQKRASKSGTRHNG 1407
            +E+K S +SD RHQVSL+VHPM QALDAA  HYDAD+ +R +K G++ NG
Sbjct: 536  EEIKVSAKSDLRHQVSLVVHPMQQALDAALLHYDADITRRNAK-GSKRNG 584


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