BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Mentha29_contig00007319
         (3933 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|EYU29217.1| hypothetical protein MIMGU_mgv1a000367mg [Mimulus...  2000   0.0  
gb|EPS73521.1| hypothetical protein M569_01229, partial [Genlise...  1880   0.0  
ref|XP_006351506.1| PREDICTED: DNA-directed RNA polymerases IV a...  1739   0.0  
ref|XP_004236361.1| PREDICTED: DNA-directed RNA polymerase D sub...  1738   0.0  
ref|XP_006364477.1| PREDICTED: DNA-directed RNA polymerases IV a...  1691   0.0  
ref|XP_004245914.1| PREDICTED: DNA-directed RNA polymerase D sub...  1680   0.0  
ref|XP_002283296.1| PREDICTED: DNA-directed RNA polymerase D sub...  1679   0.0  
emb|CBI21137.3| unnamed protein product [Vitis vinifera]             1649   0.0  
ref|XP_006442883.1| hypothetical protein CICLE_v10018562mg [Citr...  1623   0.0  
ref|XP_007011717.1| DNA-directed RNA polymerase isoform 1 [Theob...  1620   0.0  
ref|XP_002324332.2| DNA-directed RNA polymerase family protein [...  1602   0.0  
ref|XP_002515428.1| DNA-directed RNA polymerase subunit, putativ...  1598   0.0  
ref|XP_007225442.1| hypothetical protein PRUPE_ppa000410mg [Prun...  1589   0.0  
ref|XP_004288915.1| PREDICTED: DNA-directed RNA polymerase D sub...  1573   0.0  
ref|XP_004501385.1| PREDICTED: DNA-directed RNA polymerase D sub...  1572   0.0  
gb|AAY68206.1| RNA polymerase IV second largest subunit [Solanum...  1570   0.0  
ref|XP_004145500.1| PREDICTED: DNA-directed RNA polymerase D sub...  1566   0.0  
ref|XP_003523670.1| PREDICTED: DNA-directed RNA polymerases IV a...  1551   0.0  
gb|EXB86677.1| DNA-directed RNA polymerase D subunit 2a [Morus n...  1546   0.0  
ref|XP_003527775.1| PREDICTED: DNA-directed RNA polymerases IV a...  1539   0.0  

>gb|EYU29217.1| hypothetical protein MIMGU_mgv1a000367mg [Mimulus guttatus]
          Length = 1211

 Score = 2000 bits (5181), Expect = 0.0
 Identities = 962/1210 (79%), Positives = 1075/1210 (88%), Gaps = 4/1210 (0%)
 Frame = +2

Query: 161  WDFLEEAGPSSSSIRDKFSKGSTRMXXXXXXXXXXXXXXXXADCVLQEVDKGFLKAFCKK 340
            WDFLEEAGPSS +  DKFS G+T+M                 D  +QE+ +GFLK  C+K
Sbjct: 4    WDFLEEAGPSSKN--DKFSNGTTQMDIDEDIEFDSSESEDELDTAMQELSEGFLKVSCRK 61

Query: 341  ASTAFFEQYGLISHQINSFNDFVDHGIQQLFDSIGEVVIEPGYDPSKRGDGEWRRATLKF 520
            ASTAFF+QYGLISHQINS+NDFV+HGIQ++FDSIGE+V+EPGYDPSK+G+G+W+RA LKF
Sbjct: 62   ASTAFFDQYGLISHQINSYNDFVNHGIQKVFDSIGEIVVEPGYDPSKKGEGDWKRACLKF 121

Query: 521  GKVTLEPPTFWTGEKFSSADGAKDYLDLLPRHAHLQNMTYSSRIKVETHLQVYTEGLSRS 700
            GKVTLE PTFWTGEKFSS DGAKDYL+LLPRHA LQNMTY+++IKVETHLQVYT+GL+RS
Sbjct: 122  GKVTLERPTFWTGEKFSSVDGAKDYLELLPRHARLQNMTYAAKIKVETHLQVYTKGLNRS 181

Query: 701  DKFKTGVDTVVEKTILNEYHTEVNFGRLPVMVKSDLCWMSKHEERDCEFDQGGYFVIKGA 880
            DKF TGV+  VEKT+LNEYH EVNFGRLPVMVKSDLCWM   +++DCEFDQGGYFVIKGA
Sbjct: 182  DKFTTGVENTVEKTLLNEYHNEVNFGRLPVMVKSDLCWMKSLDKKDCEFDQGGYFVIKGA 241

Query: 881  EKTFIAQEQICLKRLWVAKEPTWSIAYRPVSKRKRVFIKMVPKVEHLVAGEKILTAYFYV 1060
            EKTFIAQEQ+CLKRLWV K P+W+++YRPV++R RV+IK+VPK+EH++  +KILT YFYV
Sbjct: 242  EKTFIAQEQLCLKRLWVTKIPSWTVSYRPVARRNRVYIKLVPKMEHVIGADKILTVYFYV 301

Query: 1061 AEIPVWLMFFALGVPNDREVVKLIGLDPEEDDIANILVPSIHDADKKFDGFRKGGNAIKH 1240
             EI VW++FFALG+PND+EVVKLI LD E+ DIANIL+ SI+DADKK++GFRK GN+ KH
Sbjct: 302  TEISVWVLFFALGIPNDKEVVKLIDLDIEDSDIANILIASIYDADKKYEGFRKEGNSSKH 361

Query: 1241 IKELMQGCRYPPTESVEELISTYLFPHLTSRGQKASFLAYMVKCLLEAYRGRRKVDNRDD 1420
            IKELMQ C++PPTES+E+LI  YLFPHL +  QKA FL YMVKCLLEAY+GRRKV+NRDD
Sbjct: 362  IKELMQNCKFPPTESIEDLIKNYLFPHLKTPIQKACFLGYMVKCLLEAYKGRRKVENRDD 421

Query: 1421 MRNKXXXXXXXXXXXXXXVHIKHAERRMVKAMQRDLYKDREVQSIDHYLDASIITNGLSR 1600
             RNK              VHIKHAERRM KAMQRDLY+DREVQSID YLDASI+TNGLSR
Sbjct: 422  FRNKRLELAGELLERELRVHIKHAERRMTKAMQRDLYRDREVQSIDQYLDASIVTNGLSR 481

Query: 1601 AFSTGAWVHPFKRMERIAGVVASLRRTNPLQAVCDLRRTRQQVSYTGRVGDARYPHPSHW 1780
            AFSTGAW HPFKRMER +GVVA++RRTNPLQA+ D+R+TRQQVSYTGRVGDARYPHPSHW
Sbjct: 482  AFSTGAWCHPFKRMERTSGVVATIRRTNPLQAIADMRKTRQQVSYTGRVGDARYPHPSHW 541

Query: 1781 GKVCFLSTPDGENCGLVKNLASLGIVSTNILEHANLLKKFHESGME-LVDDMSCLLDGKH 1957
            GKVCFLSTPDGENCGLVKNLASLG+VSTN+L   NLLKKF + GME +VDD S LL GKH
Sbjct: 542  GKVCFLSTPDGENCGLVKNLASLGLVSTNLLAQGNLLKKFQQCGMEKMVDDTSNLLGGKH 601

Query: 1958 RVFLDGDWVGVCKDSSSFVAKLRRRRRKLEVPYQIEIKRDKHHGEVRIFADAGRILRPLF 2137
            +VFLDGDW+G+CKDSSSFV+KLRR+RR++E+P+Q+EIKRD+H+GEVRIF D+GRILRPL 
Sbjct: 602  KVFLDGDWIGICKDSSSFVSKLRRKRRRMEIPHQMEIKRDQHNGEVRIFNDSGRILRPLL 661

Query: 2138 VVQNLKKIKDLKGHFSFQSLLSSGIVEFIGPEEEEDCQTAWGIDYLFTAELENPPVKYSH 2317
            VVQNLKKIKDLKG+FSFQSLL +GI+E IG EEEEDCQTAWG+ YLFTAELENPPVKY+H
Sbjct: 662  VVQNLKKIKDLKGNFSFQSLLDNGIIELIGAEEEEDCQTAWGVRYLFTAELENPPVKYTH 721

Query: 2318 CEFDSSFLLGLSTGIIPFANHDHARRVLYQSAKHSQQAIGYSTTNPSIRVDTNSHQLYYP 2497
            CE DSSFLLGLS GI+PF NHDHARRVLYQS KHSQQAIGYSTTN  IRVDTNSH LYYP
Sbjct: 722  CELDSSFLLGLSCGIVPFTNHDHARRVLYQSEKHSQQAIGYSTTNSIIRVDTNSHSLYYP 781

Query: 2498 QRSLFRTMLSDCLGKSRYSDHHKGMVPRPDFFNGQCAIVAVNVHLGYNQEDSLVMNRASL 2677
            QR LFRT+LSD LG+S +SDH+KGM+PRP+F+NGQCAIVA+NVHLGYNQEDSLVMNR+SL
Sbjct: 782  QRPLFRTVLSDSLGRSTFSDHYKGMIPRPEFYNGQCAIVAINVHLGYNQEDSLVMNRSSL 841

Query: 2678 ERGMFRTEHVRSYKAEVENSEG-AGKRLKADEIVSFGKIQSKIGRVDSLDDDGFPYIGAN 2854
            ERGMFRTEHVRS+KA+VENSE   GK++K DE+VSFGK+QSKIGRVDSL+DDGFPYIGAN
Sbjct: 842  ERGMFRTEHVRSFKADVENSEAVGGKKVKMDEMVSFGKMQSKIGRVDSLEDDGFPYIGAN 901

Query: 2855 LQTGDIVIGKHAAAGVDHSIKLKHTERGMVQKVVLSANDEGKNFAVVSLRQVRAPCLGDK 3034
            LQTGDIVIGKHAA GVDHSIKLKHTE+GMV KVVLSANDEGKNFAVVSLRQVR+PCLGDK
Sbjct: 902  LQTGDIVIGKHAATGVDHSIKLKHTEKGMVHKVVLSANDEGKNFAVVSLRQVRSPCLGDK 961

Query: 3035 FSSMHGQKGVLGFLESQENFPFNKDGIVPDIVINPHAFPSRQTPGQXXXXXXXXXXXXXX 3214
            FSSMHGQKGVLGFLESQENFPF++ GIVPDIVINPHAFPSRQTPGQ              
Sbjct: 962  FSSMHGQKGVLGFLESQENFPFSQQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIALGG 1021

Query: 3215 XXKYATPFSTPSVEDITAQLHRLGYSRWGGERVYDGRTGEKVESLIFMGPTFYQRLTHMA 3394
              KYATPFS+PSVEDITAQLHRLG+SRWGGERVYDGRTGEKV SLIFMGPTFYQRLTHMA
Sbjct: 1022 GLKYATPFSSPSVEDITAQLHRLGFSRWGGERVYDGRTGEKVNSLIFMGPTFYQRLTHMA 1081

Query: 3395 EDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSSQ 3574
            EDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSSQ
Sbjct: 1082 EDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSSQ 1141

Query: 3575 MHICRKCKKMANVIQRPVF--GGRKIRGPYCRFCESVEDVVRVNVPYGAKLLCQELFSMG 3748
            MHICRKCK MANVIQRP    GGRKIRGP+CR CESVEDVVRVNVPYGAKLLCQELFSMG
Sbjct: 1142 MHICRKCKNMANVIQRPGSGGGGRKIRGPFCRVCESVEDVVRVNVPYGAKLLCQELFSMG 1201

Query: 3749 ISLSFDTELC 3778
            ISL FDTELC
Sbjct: 1202 ISLKFDTELC 1211


>gb|EPS73521.1| hypothetical protein M569_01229, partial [Genlisea aurea]
          Length = 1205

 Score = 1880 bits (4871), Expect = 0.0
 Identities = 909/1206 (75%), Positives = 1041/1206 (86%), Gaps = 4/1206 (0%)
 Frame = +2

Query: 173  EEAGPSSSSIRDKFSKGSTRMXXXXXXXXXXXXXXXXADCVLQEVDKGFLKAFCKKASTA 352
            ++ GPS+S  +DK   G+T M                 D  +Q++D+G +K+FC+KA+T+
Sbjct: 2    DDVGPSTS--KDKLFNGNTFMDIDEDIDFDLSDSDDDIDNAMQDLDEGVVKSFCRKAATS 59

Query: 353  FFEQYGLISHQINSFNDFVDHGIQQLFDSIGEVVIEPGYDPSKRGD-GEWRRATLKFGKV 529
            FFEQ+GLISHQ+NS+N+F++HGI QLF SIGE+++EPGYDPSKRGD GEW++A+LKFGKV
Sbjct: 60   FFEQHGLISHQLNSYNNFINHGIHQLFASIGEIIVEPGYDPSKRGDDGEWQKASLKFGKV 119

Query: 530  TLEPPTFWTGEKFSSADGAKDYLDLLPRHAHLQNMTYSSRIKVETHLQV-YTEGLSRSDK 706
             LE P+FWTGEKFSSA+GAKD L+L P+HA LQNMTY++RIKVETHL+V YTEGL RS+K
Sbjct: 120  NLERPSFWTGEKFSSAEGAKDNLELHPKHARLQNMTYAARIKVETHLEVVYTEGLVRSEK 179

Query: 707  FKTGVDTVVEKTILNEYHTEVNFGRLPVMVKSDLCWMSKHEERDCEFDQGGYFVIKGAEK 886
            F TGV T V++T L     E+NFG+LPVMV SDLCW+    ++DCEFDQGGYF+IKGAEK
Sbjct: 180  FTTGVSTHVQRTTLKSLSLEINFGKLPVMVNSDLCWLKSTGKKDCEFDQGGYFIIKGAEK 239

Query: 887  TFIAQEQICLKRLWVAKEPTWSIAYRPVSKRKRVFIKMVPKVEHLVAGEKILTAYFYVAE 1066
            TFIAQEQICLKRLWV+K+PTW+I+YRP++KR+R+++K+VPKVE    GEKILT YF   E
Sbjct: 240  TFIAQEQICLKRLWVSKDPTWTISYRPITKRRRIYLKLVPKVESAPVGEKILTVYFSFVE 299

Query: 1067 IPVWLMFFALGVPNDREVVKLIGLDPEEDDIANILVPSIHDADKKFDGFRKGGNAIKHIK 1246
            +P+W++FFALG  ND+EVVK+I +D E+  IANIL+ SIHDAD K++GFRK G+AIKH+K
Sbjct: 300  MPIWILFFALGARNDKEVVKMIDMDIEDSAIANILLASIHDADSKYEGFRKNGSAIKHLK 359

Query: 1247 ELMQGCRYPPTESVEELISTYLFPHLTSRGQKASFLAYMVKCLLEAYRGRRKVDNRDDMR 1426
            +LMQ  +YPPTESVEE    +LFPHL S  QKA FLAYMVKCLLE Y+GRRKVDNRDD+R
Sbjct: 360  DLMQEGKYPPTESVEEYFQIHLFPHLKSSVQKACFLAYMVKCLLECYKGRRKVDNRDDLR 419

Query: 1427 NKXXXXXXXXXXXXXXVHIKHAERRMVKAMQRDLYKDREVQSIDHYLDASIITNGLSRAF 1606
            NK              + IKHAERRM+++MQRDL K R++Q+IDHYLDASIITNGLSRAF
Sbjct: 420  NKRLELAGELLERELRIQIKHAERRMMRSMQRDLDKGRDLQTIDHYLDASIITNGLSRAF 479

Query: 1607 STGAWVHPFKRMERIAGVVASLRRTNPLQAVCDLRRTRQQVSYTGRVGDARYPHPSHWGK 1786
            STGAW HP+KRMERI+G+VA+LRRTNPLQA+ D+R+TRQQVSYTGRVGDARYPHPSHWGK
Sbjct: 480  STGAWSHPYKRMERISGIVATLRRTNPLQAIADMRKTRQQVSYTGRVGDARYPHPSHWGK 539

Query: 1787 VCFLSTPDGENCGLVKNLASLGIVSTNILEHANLLKKFHESGME-LVDDMSCLLDGKHRV 1963
            +CFLSTPDGENCGLVKNLASLG+VST +L+   LLKKF E GME L DD S LLDGKH++
Sbjct: 540  ICFLSTPDGENCGLVKNLASLGLVSTEVLDQEGLLKKFRECGMEQLADDTSSLLDGKHKI 599

Query: 1964 FLDGDWVGVCKDSSSFVAKLRRRRRKLEVPYQIEIKRDKHHGEVRIFADAGRILRPLFVV 2143
            FLDGD VGVC+DSSSFV+ LRRRR+K EVP+Q+EIK D+ +GEVR+FADAGRILRPL VV
Sbjct: 600  FLDGDLVGVCRDSSSFVSMLRRRRQKNEVPHQVEIKMDQSNGEVRVFADAGRILRPLLVV 659

Query: 2144 QNLKKIKDLKGHFSFQSLLSSGIVEFIGPEEEEDCQTAWGIDYLFTAELENPPVKYSHCE 2323
            +NL+KI DLK H  FQSLL  GIVE IGPEEEEDCQTAWG  YLF AELENPPVKYSHCE
Sbjct: 660  RNLRKINDLKSHVFFQSLLDVGIVELIGPEEEEDCQTAWGTKYLFMAELENPPVKYSHCE 719

Query: 2324 FDSSFLLGLSTGIIPFANHDHARRVLYQSAKHSQQAIGYSTTNPSIRVDTNSHQLYYPQR 2503
             DSSFLLGLS GIIPFANHDHARRVLYQS KHSQQAIG+STT+P+IRVDTNSHQLYYPQ+
Sbjct: 720  LDSSFLLGLSCGIIPFANHDHARRVLYQSEKHSQQAIGFSTTSPNIRVDTNSHQLYYPQK 779

Query: 2504 SLFRTMLSDCLGKSRYSDHHKGMVPRPDFFNGQCAIVAVNVHLGYNQEDSLVMNRASLER 2683
             LFRT+LSDCLGK   S   KG++P P FFNGQCAIVAVNVHLGYNQEDSLVMNRASLER
Sbjct: 780  PLFRTVLSDCLGKLTDSCRRKGIIPLPPFFNGQCAIVAVNVHLGYNQEDSLVMNRASLER 839

Query: 2684 GMFRTEHVRSYKAEVENSEGAG-KRLKADEIVSFGKIQSKIGRVDSLDDDGFPYIGANLQ 2860
            GMFR+EHVRSYK++V+NSE A  K+ KAD+++SFGK+QSKIGRVDSLD+DGFPY+GANLQ
Sbjct: 840  GMFRSEHVRSYKSDVDNSEAAPVKKFKADDLISFGKVQSKIGRVDSLDEDGFPYVGANLQ 899

Query: 2861 TGDIVIGKHAAAGVDHSIKLKHTERGMVQKVVLSANDEGKNFAVVSLRQVRAPCLGDKFS 3040
            TGDIVIGK  A GVDHSIKLKHTERGMVQKV+LSA+DEG+N+AVVSLRQVR+PCLGDKFS
Sbjct: 900  TGDIVIGKCTATGVDHSIKLKHTERGMVQKVILSADDEGRNYAVVSLRQVRSPCLGDKFS 959

Query: 3041 SMHGQKGVLGFLESQENFPFNKDGIVPDIVINPHAFPSRQTPGQXXXXXXXXXXXXXXXX 3220
            SMHGQKGVLGFLESQENFPF + GIVPDIVINPHAFPSRQTPGQ                
Sbjct: 960  SMHGQKGVLGFLESQENFPFTRQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIALGGGL 1019

Query: 3221 KYATPFSTPSVEDITAQLHRLGYSRWGGERVYDGRTGEKVESLIFMGPTFYQRLTHMAED 3400
            KYATPFS+PSVEDITAQLHRLG+SRWG E+VYDGRTGE ++SLIFMGPTFYQRLTHMAED
Sbjct: 1020 KYATPFSSPSVEDITAQLHRLGFSRWGAEKVYDGRTGEALKSLIFMGPTFYQRLTHMAED 1079

Query: 3401 KVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSSQMH 3580
            KVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSSQMH
Sbjct: 1080 KVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSSQMH 1139

Query: 3581 ICRKCKKMANVIQRPVFGGRKIRGPYCRFCESVEDVVRVNVPYGAKLLCQELFSMGISLS 3760
            ICRKCK MANVIQRPVFGGRK+RGPYCRFCESVEDVVRVNVPYGAKLLCQELFSMGISL 
Sbjct: 1140 ICRKCKNMANVIQRPVFGGRKVRGPYCRFCESVEDVVRVNVPYGAKLLCQELFSMGISLK 1199

Query: 3761 FDTELC 3778
            FDTE+C
Sbjct: 1200 FDTEIC 1205


>ref|XP_006351506.1| PREDICTED: DNA-directed RNA polymerases IV and V subunit 2-like
            [Solanum tuberosum]
          Length = 1217

 Score = 1739 bits (4504), Expect = 0.0
 Identities = 857/1220 (70%), Positives = 995/1220 (81%), Gaps = 15/1220 (1%)
 Frame = +2

Query: 164  DFLEEAGPSSSSIRDKFSKGSTRMXXXXXXXXXXXXXXXXAD-----------CVLQEVD 310
            D +EE G SS   ++K S GS RM                 D            +++E+ 
Sbjct: 5    DIMEEVGCSSG--KEKISNGSARMDFDIDDLFEVDDDDWDEDEDEDEDDSHDMVLIKELG 62

Query: 311  KGFLKAFCKKASTAFFEQYGLISHQINSFNDFVDHGIQQLFDSIGEVVIEPGYDPSKRGD 490
            + +LK FCKKAST FFE+YGLISHQINS+NDF+++GIQ++FDS+GE+ +EPGYDPSKRGD
Sbjct: 63   ETYLKNFCKKASTGFFEKYGLISHQINSYNDFINYGIQRVFDSVGEIHVEPGYDPSKRGD 122

Query: 491  GEWRRATLKFGKVTLEPPTFWTGEKFSSADGAKDYLDLLPRHAHLQNMTYSSRIKVETHL 670
            G+W+ A++KFGKVTLE P FW GEKFS ADG K+YLDLLPRHA LQNMTYS+RI VETH+
Sbjct: 123  GDWKHASVKFGKVTLERPKFWAGEKFS-ADGGKEYLDLLPRHARLQNMTYSARIMVETHV 181

Query: 671  QVYTEGLSRSDKFKTGVDTVVEKTILNEYHTEVNFGRLPVMVKSDLCWMSKHEERDCEFD 850
            QVYT+ L RSDKFKTGVD  V+K    E   +V  GR+PVMV S+LCWM+  ++ DCEFD
Sbjct: 182  QVYTKKLVRSDKFKTGVDQFVDKECEVEDKRDVLIGRIPVMVNSELCWMNGVDKLDCEFD 241

Query: 851  QGGYFVIKGAEKTFIAQEQICLKRLWVAKEPTWSIAYRPVSKRKRVFIKMVP--KVEHLV 1024
             GGYF++KGAEKTFIAQEQ+CLKRLWV+  PTW + YRP  KRKRV+IK+    K+EH+ 
Sbjct: 242  HGGYFIVKGAEKTFIAQEQLCLKRLWVSNNPTWMVGYRPGEKRKRVYIKLTETLKLEHIK 301

Query: 1025 AGEKILTAYFYVAEIPVWLMFFALGVPNDREVVKLIGLDPEEDDIANILVPSIHDADKKF 1204
             GEK L+ Y  +AE+P+W++FFALGV +DREVV LI +D E+  I NILV SIH+ADK  
Sbjct: 302  GGEKALSVYI-LAEMPIWVLFFALGVSSDREVVNLIDVDIEDTTIVNILVASIHEADKNC 360

Query: 1205 DGFRKGGNAIKHIKELMQGCRYPPTESVEELISTYLFPHLTSRGQKASFLAYMVKCLLEA 1384
            + FRKG  A+ ++  L++ C++PP ESVEE I+ YLFP+L+   QKA FL YMVKCLL +
Sbjct: 361  EDFRKGKKALAYVDRLIKNCKFPPQESVEECINAYLFPNLSGFKQKARFLGYMVKCLLHS 420

Query: 1385 YRGRRKVDNRDDMRNKXXXXXXXXXXXXXXVHIKHAERRMVKAMQRDLYKDREVQSIDHY 1564
            + GRRKVDNRDD RNK               HIKHAERRMVKAMQRDLY DR+VQ I+HY
Sbjct: 421  FIGRRKVDNRDDFRNKRLELAGELLERELRAHIKHAERRMVKAMQRDLYGDRQVQPIEHY 480

Query: 1565 LDASIITNGLSRAFSTGAWVHPFKRMERIAGVVASLRRTNPLQAVCDLRRTRQQVSYTGR 1744
            LDASIITNGLSRAFSTG W HP+KRMER++GVVA+LRRTNPLQ   D+R++RQQV+YTG+
Sbjct: 481  LDASIITNGLSRAFSTGHWCHPYKRMERVSGVVATLRRTNPLQMTADMRKSRQQVTYTGK 540

Query: 1745 VGDARYPHPSHWGKVCFLSTPDGENCGLVKNLASLGIVSTNILEHANLLKKFHESGME-L 1921
            VGDARYPHPSHWGK+CFLSTPDGENCGLVKNLAS+G+VST IL+    L+     GM+ L
Sbjct: 541  VGDARYPHPSHWGKLCFLSTPDGENCGLVKNLASMGLVSTIILKP--FLETLFRCGMQKL 598

Query: 1922 VDDMSCLLDGKHRVFLDGDWVGVCKDSSSFVAKLRRRRRKLEVPYQIEIKRDKHHGEVRI 2101
            VDD +  L GK +V LDG+WVGVC+DS+ FV+KLRR+RR+ EVP+Q+E+KRD+  GEVRI
Sbjct: 599  VDDCATSLHGKQKVLLDGEWVGVCEDSALFVSKLRRKRRRNEVPHQVEVKRDELQGEVRI 658

Query: 2102 FADAGRILRPLFVVQNLKKIKDLKG-HFSFQSLLSSGIVEFIGPEEEEDCQTAWGIDYLF 2278
            F+D+GRILRPL VV NLKKIK LKG  + FQSLL +GI+EFIGPEEEEDC+TAWG++Y+ 
Sbjct: 659  FSDSGRILRPLLVVSNLKKIKALKGGDYGFQSLLDNGIIEFIGPEEEEDCRTAWGVEYIL 718

Query: 2279 TAELENPPVKYSHCEFDSSFLLGLSTGIIPFANHDHARRVLYQSAKHSQQAIGYSTTNPS 2458
             A+ ENPP KY+HCE D SFLLGLS GIIPFANHDHARRVLYQS KHSQQAIG+ST NP+
Sbjct: 719  KADKENPPAKYTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSEKHSQQAIGFSTVNPN 778

Query: 2459 IRVDTNSHQLYYPQRSLFRTMLSDCLGKSRYSDHHKGMVPRPDFFNGQCAIVAVNVHLGY 2638
             RVDTN+HQLYYPQR LFRTML+D LGK + + + KGM+PRP++FNGQCAIVAVNVHLGY
Sbjct: 779  NRVDTNTHQLYYPQRPLFRTMLADSLGKPKCTQYQKGMLPRPEYFNGQCAIVAVNVHLGY 838

Query: 2639 NQEDSLVMNRASLERGMFRTEHVRSYKAEVENSEGAGKRLKADEIVSFGKIQSKIGRVDS 2818
            NQEDSLVMNRASLERGMFR+EHVRSYKAEV+N E   K+LK ++ V+FGK QSKIGRVDS
Sbjct: 839  NQEDSLVMNRASLERGMFRSEHVRSYKAEVDNKEAMAKKLKIEDSVNFGKTQSKIGRVDS 898

Query: 2819 LDDDGFPYIGANLQTGDIVIGKHAAAGVDHSIKLKHTERGMVQKVVLSANDEGKNFAVVS 2998
            LDDDGFP+IGANLQ+GDI+IGK A +G DHS+KLKHTERGMVQKV+LSANDEGKNFAVVS
Sbjct: 899  LDDDGFPFIGANLQSGDIIIGKFAESGADHSVKLKHTERGMVQKVLLSANDEGKNFAVVS 958

Query: 2999 LRQVRAPCLGDKFSSMHGQKGVLGFLESQENFPFNKDGIVPDIVINPHAFPSRQTPGQXX 3178
            LRQVR+PCLGDKFSSMHGQKGVLGFLESQENFPF   GIVPDIVINPHAFPSRQTPGQ  
Sbjct: 959  LRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLL 1018

Query: 3179 XXXXXXXXXXXXXXKYATPFSTPSVEDITAQLHRLGYSRWGGERVYDGRTGEKVESLIFM 3358
                          KYATPFST SV+ I  QL   G++RWG ERVY+GRTGE V SLIFM
Sbjct: 1019 EAALGKGIALGGGQKYATPFSTLSVDAIMEQLQGRGFTRWGNERVYNGRTGEMVHSLIFM 1078

Query: 3359 GPTFYQRLTHMAEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANL 3538
            GPTFYQRL HMAEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANL
Sbjct: 1079 GPTFYQRLIHMAEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANL 1138

Query: 3539 HERLFTLSDSSQMHICRKCKKMANVIQRPVFGGRKIRGPYCRFCESVEDVVRVNVPYGAK 3718
            HERLFTLSDSSQMHIC KCK MANVIQR V GG K+RGP+CRFCESVED+V+VNVPYGAK
Sbjct: 1139 HERLFTLSDSSQMHICGKCKNMANVIQRTVQGG-KVRGPFCRFCESVEDIVKVNVPYGAK 1197

Query: 3719 LLCQELFSMGISLSFDTELC 3778
            LLCQELFSMGISL FDTE+C
Sbjct: 1198 LLCQELFSMGISLKFDTEIC 1217


>ref|XP_004236361.1| PREDICTED: DNA-directed RNA polymerase D subunit 2a [Solanum
            lycopersicum]
          Length = 1217

 Score = 1738 bits (4500), Expect = 0.0
 Identities = 857/1220 (70%), Positives = 993/1220 (81%), Gaps = 15/1220 (1%)
 Frame = +2

Query: 164  DFLEEAGPSSSSIRDKFSKGSTRMXXXXXXXXXXXXXXXXAD-----------CVLQEVD 310
            D +EE G SS   ++K S GSTRM                 D            +++E+ 
Sbjct: 5    DIMEEVGCSSG--KEKISNGSTRMDFDIDDLFEVDDDDWDEDEDEDEDDSHDMVLIKELG 62

Query: 311  KGFLKAFCKKASTAFFEQYGLISHQINSFNDFVDHGIQQLFDSIGEVVIEPGYDPSKRGD 490
            + FLK FCKKAST FFE+YGLISHQINS+NDF+++GIQ++FDS+GE+ +EPGYDPSKRGD
Sbjct: 63   ESFLKNFCKKASTGFFEKYGLISHQINSYNDFINYGIQRVFDSVGEIHVEPGYDPSKRGD 122

Query: 491  GEWRRATLKFGKVTLEPPTFWTGEKFSSADGAKDYLDLLPRHAHLQNMTYSSRIKVETHL 670
            G+W+ A++KFGKVTLE P FW GEKFS  DG K+YLDLLPRHA LQNMTYS+RI VETH+
Sbjct: 123  GDWKHASVKFGKVTLERPKFWAGEKFS-VDGGKEYLDLLPRHARLQNMTYSARIMVETHV 181

Query: 671  QVYTEGLSRSDKFKTGVDTVVEKTILNEYHTEVNFGRLPVMVKSDLCWMSKHEERDCEFD 850
            QVYT+ L RSDKFKTGVD  V+K    E   +V  GR+PVMV S+LCWM+  ++ DCEFD
Sbjct: 182  QVYTKKLVRSDKFKTGVDRFVDKEWEVEDKRDVLIGRIPVMVNSELCWMNGVDKLDCEFD 241

Query: 851  QGGYFVIKGAEKTFIAQEQICLKRLWVAKEPTWSIAYRPVSKRKRVFIKMVP--KVEHLV 1024
             GGYF++KGAEKTFIAQEQ+CLKRLWV+  PTW + YRP  KRKRV+IK+    K+EH+ 
Sbjct: 242  HGGYFIVKGAEKTFIAQEQLCLKRLWVSNNPTWMVGYRPGEKRKRVYIKLTETLKLEHIK 301

Query: 1025 AGEKILTAYFYVAEIPVWLMFFALGVPNDREVVKLIGLDPEEDDIANILVPSIHDADKKF 1204
             GEK L+ Y  +AE+P+W++FFALGV +DREVV LI +D E+  I NILV SIH+ADK  
Sbjct: 302  GGEKALSVYI-LAEMPIWVLFFALGVSSDREVVNLIDVDIEDTTIVNILVASIHEADKNC 360

Query: 1205 DGFRKGGNAIKHIKELMQGCRYPPTESVEELISTYLFPHLTSRGQKASFLAYMVKCLLEA 1384
            + FRKG  A+ ++  L++ C++PP ESVEE I+ YLFP+L+   QKA FL YMVKCLL +
Sbjct: 361  EDFRKGKKALAYVDRLIKNCKFPPQESVEECINAYLFPNLSGFKQKARFLGYMVKCLLHS 420

Query: 1385 YRGRRKVDNRDDMRNKXXXXXXXXXXXXXXVHIKHAERRMVKAMQRDLYKDREVQSIDHY 1564
            + GRRKVDNRDD RNK               HIKHAERRMVKAMQRDLY DR+VQ I+HY
Sbjct: 421  FIGRRKVDNRDDFRNKRLELAGELLERELRAHIKHAERRMVKAMQRDLYGDRQVQPIEHY 480

Query: 1565 LDASIITNGLSRAFSTGAWVHPFKRMERIAGVVASLRRTNPLQAVCDLRRTRQQVSYTGR 1744
            LDASIITNGLSRAFSTG W HP+KRMER++GVVA+LRRTNPLQ   D+R++RQQV+YTG+
Sbjct: 481  LDASIITNGLSRAFSTGHWCHPYKRMERVSGVVATLRRTNPLQMTADMRKSRQQVTYTGK 540

Query: 1745 VGDARYPHPSHWGKVCFLSTPDGENCGLVKNLASLGIVSTNILEHANLLKKFHESGME-L 1921
            VGDARYPHPSHWGK+CFLSTPDGENCGLVKNLAS+G+VST IL+    L+     GM+ L
Sbjct: 541  VGDARYPHPSHWGKLCFLSTPDGENCGLVKNLASMGLVSTIILKP--FLETLFRCGMQKL 598

Query: 1922 VDDMSCLLDGKHRVFLDGDWVGVCKDSSSFVAKLRRRRRKLEVPYQIEIKRDKHHGEVRI 2101
            VDD S  L GK +V LDG+WVGVC+DS+ FV+KLRR+RR+ EVP+Q+E+KRD+  GEVRI
Sbjct: 599  VDDCSTSLHGKQKVLLDGEWVGVCEDSALFVSKLRRKRRRNEVPHQVEVKRDELQGEVRI 658

Query: 2102 FADAGRILRPLFVVQNLKKIKDLKG-HFSFQSLLSSGIVEFIGPEEEEDCQTAWGIDYLF 2278
            F+D GRILRPL VV NLKKIK LKG  + FQSLL +GI+E IGPEEEEDC+TAWG++Y+ 
Sbjct: 659  FSDPGRILRPLLVVSNLKKIKALKGGDYGFQSLLDNGIIELIGPEEEEDCRTAWGVEYIL 718

Query: 2279 TAELENPPVKYSHCEFDSSFLLGLSTGIIPFANHDHARRVLYQSAKHSQQAIGYSTTNPS 2458
             A+ ENPP KY+HCE D SFLLGLS GIIPFANHDHARRVLYQS KHSQQAIG+ST NP+
Sbjct: 719  KADKENPPAKYTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSEKHSQQAIGFSTVNPN 778

Query: 2459 IRVDTNSHQLYYPQRSLFRTMLSDCLGKSRYSDHHKGMVPRPDFFNGQCAIVAVNVHLGY 2638
             RVDTN+HQLYYPQR LFRTML+D LGK + + + KGM+PRP++FNGQCAIVAVNVHLGY
Sbjct: 779  NRVDTNTHQLYYPQRPLFRTMLADSLGKPKCAQYQKGMLPRPEYFNGQCAIVAVNVHLGY 838

Query: 2639 NQEDSLVMNRASLERGMFRTEHVRSYKAEVENSEGAGKRLKADEIVSFGKIQSKIGRVDS 2818
            NQEDSLVMNRASLERGMFR+EHVRSYKAEV+N E   K+LK ++ V+FGK QSKIGRVDS
Sbjct: 839  NQEDSLVMNRASLERGMFRSEHVRSYKAEVDNKEAMAKKLKIEDSVNFGKTQSKIGRVDS 898

Query: 2819 LDDDGFPYIGANLQTGDIVIGKHAAAGVDHSIKLKHTERGMVQKVVLSANDEGKNFAVVS 2998
            LDDDGFP+IGANLQ+GDI+IGK + +G DHS+KLKHTERGMVQKV+LSANDEGKNFAVVS
Sbjct: 899  LDDDGFPFIGANLQSGDIIIGKFSESGADHSVKLKHTERGMVQKVLLSANDEGKNFAVVS 958

Query: 2999 LRQVRAPCLGDKFSSMHGQKGVLGFLESQENFPFNKDGIVPDIVINPHAFPSRQTPGQXX 3178
            LRQVR+PCLGDKFSSMHGQKGVLGFLESQENFPF   GIVPDIVINPHAFPSRQTPGQ  
Sbjct: 959  LRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLL 1018

Query: 3179 XXXXXXXXXXXXXXKYATPFSTPSVEDITAQLHRLGYSRWGGERVYDGRTGEKVESLIFM 3358
                          KYATPFST SV+ I  QL   G++RWG ERVY+GRTGE V SLIFM
Sbjct: 1019 EAALGKGIALGGGQKYATPFSTLSVDAIMEQLQGRGFTRWGNERVYNGRTGEMVHSLIFM 1078

Query: 3359 GPTFYQRLTHMAEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANL 3538
            GPTFYQRL HMAEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANL
Sbjct: 1079 GPTFYQRLIHMAEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANL 1138

Query: 3539 HERLFTLSDSSQMHICRKCKKMANVIQRPVFGGRKIRGPYCRFCESVEDVVRVNVPYGAK 3718
            HERLFTLSDSSQMHIC KCK MANVIQR V GG K+RGP+CRFCESVED+V+VNVPYGAK
Sbjct: 1139 HERLFTLSDSSQMHICGKCKNMANVIQRTVQGG-KVRGPFCRFCESVEDIVKVNVPYGAK 1197

Query: 3719 LLCQELFSMGISLSFDTELC 3778
            LLCQELFSMGISL FDTE+C
Sbjct: 1198 LLCQELFSMGISLKFDTEIC 1217


>ref|XP_006364477.1| PREDICTED: DNA-directed RNA polymerases IV and V subunit 2-like
            [Solanum tuberosum]
          Length = 1219

 Score = 1691 bits (4379), Expect = 0.0
 Identities = 834/1222 (68%), Positives = 978/1222 (80%), Gaps = 17/1222 (1%)
 Frame = +2

Query: 164  DFLEEAGPSSSSIRDKFSKGSTRMXXXXXXXXXXXXXXXXAD---------CVLQEVDKG 316
            D +E+ G SS   + K S GST M                 D           ++E+  G
Sbjct: 5    DIMEDVGCSSG--KAKTSNGSTMMDFDIDGLFEVEDYDWDEDEDEDDNLDMTSIKELGGG 62

Query: 317  FLKAFCKKASTAFFEQYGLISHQINSFNDFVDHGIQQLFDSIGEVVIEPGYDPSKRGDGE 496
            FL+ FCKKAS  FFE+YG+ISHQI+S+NDF+ +GIQ++FDS+GE+ +EPGYDPSK+G+GE
Sbjct: 63   FLRNFCKKASAGFFEKYGVISHQIDSYNDFIRYGIQRVFDSVGEIHVEPGYDPSKKGEGE 122

Query: 497  WRRATLKFGKVTLEPPTFWTGEKFSSADGAKDYLDLLPRHAHLQNMTYSSRIKVETHLQV 676
            W+ A++KFGKVTL+ P FW GEKFS+ +G ++YLDL PRHA LQNMTYS+RI VETH+QV
Sbjct: 123  WKHASVKFGKVTLDRPKFWAGEKFSAYNG-EEYLDLWPRHARLQNMTYSARIIVETHVQV 181

Query: 677  YTEGLSRSDKFKTGVDTVVEKTILNEYHTEVNFGRLPVMVKSDLCWMSKHEERDCEFDQG 856
            +T+ L RSDKFKTGV+  V+K  + E   +V  GR+PVMV S+LCWMS  +  DC+FD G
Sbjct: 182  FTKKLVRSDKFKTGVEQFVDKECVMEDKRDVFIGRIPVMVNSELCWMSGADRPDCDFDHG 241

Query: 857  GYFVIKGAEKTFIAQEQICLKRLWVAKEPTWSIAYRPVSKRKRVFIKMVP--KVEHLVAG 1030
            GYF++KGAEK FIAQEQICLKRLWV+   TW +AYR   KR RV++K+    K EH+   
Sbjct: 242  GYFIVKGAEKIFIAQEQICLKRLWVSNHSTWMVAYRSGEKRNRVYLKLTETLKHEHIKGE 301

Query: 1031 EKILTAYFYVAEIPVWLMFFALGVPNDREVVKLIGLDPEEDDIANILVPSIHDADKKFDG 1210
             K L+ YF +AE+P+W++FFALGV +DRE+V LI +D ++ +I NILV SIHDADK  + 
Sbjct: 302  AKALSVYF-LAEMPIWVLFFALGVSSDREIVDLIDVDIKDTNIINILVASIHDADKNCED 360

Query: 1211 FRKGGNAIKHIKELMQGCRYPPTESVEELISTYLFPHLTSRGQKASFLAYMVKCLLEAYR 1390
            FRKG  A+ ++  L++ C++PP ESVEE I  YLFP+L+   QKA FL YMVKCLL +Y 
Sbjct: 361  FRKGKKALAYVDRLIKSCKFPPQESVEECIKEYLFPNLSGLKQKARFLGYMVKCLLLSYI 420

Query: 1391 GRRKVDNRDDMRNKXXXXXXXXXXXXXXVHIKHAERRMVKAMQRDLYKDREVQSIDHYLD 1570
            GRRKVDNRDD RNK               HIKHAERRMVKA+QRDL  DR+VQ ++HYLD
Sbjct: 421  GRRKVDNRDDFRNKRLDLAGELLERELRAHIKHAERRMVKALQRDLCGDRQVQPLEHYLD 480

Query: 1571 ASIITNGLSRAFSTGAWVHPFKRMERIAGVVASLRRTNPLQAVCDLRRTRQQVSYTGRVG 1750
            ASIITNGLSRAFSTG W HP+KRMER++GVVA+LRRTNPLQ   DLR+TRQQV+YTG+VG
Sbjct: 481  ASIITNGLSRAFSTGHWCHPYKRMERVSGVVATLRRTNPLQMTADLRKTRQQVTYTGKVG 540

Query: 1751 DARYPHPSHWGKVCFLSTPDGENCGLVKNLASLGIVSTNILEHANLLKKFHESGME-LVD 1927
            DARYPHPSHWGKVCFLSTPDGENCGLVKNLAS+G+VST +L+   LL+     GM+ LVD
Sbjct: 541  DARYPHPSHWGKVCFLSTPDGENCGLVKNLASMGLVSTTVLKP--LLETLFRCGMQKLVD 598

Query: 1928 DMSCLLDGKHRVFLDGDWVGVCKDSSSFVAKLRRRRRKLEVPYQIEIKRDKHHGEVRIFA 2107
            D +  L GK +V LDGDWVGVC+DS+ FV+KLRR+RR+ EVP+Q+E+KRD+   EVRIF+
Sbjct: 599  DSATSLHGKQKVLLDGDWVGVCEDSALFVSKLRRKRRRNEVPHQVEVKRDEQQDEVRIFS 658

Query: 2108 DAGRILRPLFVVQNLKKIKDLK-----GHFSFQSLLSSGIVEFIGPEEEEDCQTAWGIDY 2272
            DAGRI+RPL VV NLK IK LK     G + FQ+LL  GI+E IGPEEEEDC+TAWG++Y
Sbjct: 659  DAGRIMRPLLVVSNLKNIKSLKDGMKGGDYGFQTLLDKGIIELIGPEEEEDCRTAWGVEY 718

Query: 2273 LFTAELENPPVKYSHCEFDSSFLLGLSTGIIPFANHDHARRVLYQSAKHSQQAIGYSTTN 2452
            L  A+ ENPPV Y+HCE D SFLLGLS G+IPFANHDHARRVLYQS KHSQQAIG+ST N
Sbjct: 719  LLKADKENPPVNYTHCELDMSFLLGLSCGLIPFANHDHARRVLYQSEKHSQQAIGFSTVN 778

Query: 2453 PSIRVDTNSHQLYYPQRSLFRTMLSDCLGKSRYSDHHKGMVPRPDFFNGQCAIVAVNVHL 2632
            P+ RVDTN+HQLYYPQR LF TMLSD LGK +   H KGM+ RP+++NGQCAIVAVNVHL
Sbjct: 779  PNARVDTNTHQLYYPQRPLFGTMLSDSLGKPKCGRHQKGMLSRPEYYNGQCAIVAVNVHL 838

Query: 2633 GYNQEDSLVMNRASLERGMFRTEHVRSYKAEVENSEGAGKRLKADEIVSFGKIQSKIGRV 2812
            GYNQEDS+VMNRASLERGMFR+EHVRSYKAEV+N E  GK+ K ++ V+FGK QSKIGRV
Sbjct: 839  GYNQEDSVVMNRASLERGMFRSEHVRSYKAEVDNKEAMGKKSKVEDSVNFGKTQSKIGRV 898

Query: 2813 DSLDDDGFPYIGANLQTGDIVIGKHAAAGVDHSIKLKHTERGMVQKVVLSANDEGKNFAV 2992
            DSLDDDGFP+IGANLQ+GDI+IGK+A +G DHS+K+KHTERGMVQKV+LSAND+GKNFAV
Sbjct: 899  DSLDDDGFPFIGANLQSGDIIIGKYAESGADHSVKMKHTERGMVQKVLLSANDDGKNFAV 958

Query: 2993 VSLRQVRAPCLGDKFSSMHGQKGVLGFLESQENFPFNKDGIVPDIVINPHAFPSRQTPGQ 3172
            VSLRQVR+PCLGDKFSSMHGQKGVLG+LESQENFPF   GIVPDIVINPHAFPSRQTPGQ
Sbjct: 959  VSLRQVRSPCLGDKFSSMHGQKGVLGYLESQENFPFTVQGIVPDIVINPHAFPSRQTPGQ 1018

Query: 3173 XXXXXXXXXXXXXXXXKYATPFSTPSVEDITAQLHRLGYSRWGGERVYDGRTGEKVESLI 3352
                            KYATPFS  SV+ I  QLH  G+SRWG ERVY+GRTGE V SLI
Sbjct: 1019 LLEAALGKGIALGGGEKYATPFSALSVDAILKQLHGRGFSRWGSERVYNGRTGEMVHSLI 1078

Query: 3353 FMGPTFYQRLTHMAEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAA 3532
            FMGPTFYQRL HMAEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAA
Sbjct: 1079 FMGPTFYQRLIHMAEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAA 1138

Query: 3533 NLHERLFTLSDSSQMHICRKCKKMANVIQRPVFGGRKIRGPYCRFCESVEDVVRVNVPYG 3712
            NLHERLFTLSDSSQMHIC KCK MANVIQR   GG KIRGP+CRFCESVED+V+V+VPYG
Sbjct: 1139 NLHERLFTLSDSSQMHICGKCKNMANVIQRSAPGG-KIRGPFCRFCESVEDIVKVDVPYG 1197

Query: 3713 AKLLCQELFSMGISLSFDTELC 3778
            AKLLCQELFSMGISL FDTE+C
Sbjct: 1198 AKLLCQELFSMGISLKFDTEIC 1219


>ref|XP_004245914.1| PREDICTED: DNA-directed RNA polymerase D subunit 2a-like [Solanum
            lycopersicum]
          Length = 1219

 Score = 1680 bits (4351), Expect = 0.0
 Identities = 827/1221 (67%), Positives = 975/1221 (79%), Gaps = 16/1221 (1%)
 Frame = +2

Query: 164  DFLEEAGPSSSSIRDKFSKGSTRMXXXXXXXXXXXXXXXXAD---------CVLQEVDKG 316
            D +E+ G SS   + K S GST M                 D           ++E+  G
Sbjct: 5    DIMEDVGCSSG--KGKTSNGSTMMDFDIDGLFEVGDYDWDDDEDEDDNLDMASIKELGGG 62

Query: 317  FLKAFCKKASTAFFEQYGLISHQINSFNDFVDHGIQQLFDSIGEVVIEPGYDPSKRGDGE 496
            FL+ FCKKAS  FFE+YGLISHQI+S+NDF+ +GIQ++FDS+GE+ +EPGYDPSK+G+GE
Sbjct: 63   FLRNFCKKASAGFFEKYGLISHQIDSYNDFIRYGIQKVFDSVGEIHVEPGYDPSKKGEGE 122

Query: 497  WRRATLKFGKVTLEPPTFWTGEKFSSADGAKDYLDLLPRHAHLQNMTYSSRIKVETHLQV 676
            W+ A++KFG V L+ P FW GEK+S+ +G ++YL++ PRHA LQNMTYS+RI VETH+QV
Sbjct: 123  WKHASVKFGNVILDRPKFWAGEKYSAYNG-EEYLNMWPRHARLQNMTYSARIIVETHVQV 181

Query: 677  YTEGLSRSDKFKTGVDTVVEKTILNEYHTEVNFGRLPVMVKSDLCWMSKHEERDCEFDQG 856
            +T+ L RSDKFKTGV+  V+K  + E   +V  GR+PVMV S+LCWMS  +  DCEFD G
Sbjct: 182  FTKKLVRSDKFKTGVEQFVDKECVMEDKRDVFIGRIPVMVNSELCWMSGADRLDCEFDHG 241

Query: 857  GYFVIKGAEKTFIAQEQICLKRLWVAKEPTWSIAYRPVSKRKRVFIKMVPKVEH-LVAGE 1033
            GYF++KGAEK FIAQEQ+CLKRLWV+   TW +AYR   KR RV++K+   ++H  + GE
Sbjct: 242  GYFIVKGAEKIFIAQEQMCLKRLWVSNHYTWMVAYRSGEKRNRVYLKLTETLKHEQIKGE 301

Query: 1034 KILTAYFYVAEIPVWLMFFALGVPNDREVVKLIGLDPEEDDIANILVPSIHDADKKFDGF 1213
                + +++AE+P+W++FFALGV +DREVV LI +D +++ I NILV SIHDADK  + F
Sbjct: 302  AKSLSVYFLAEMPIWVLFFALGVSSDREVVDLIDVDIKDNKIINILVASIHDADKNCEDF 361

Query: 1214 RKGGNAIKHIKELMQGCRYPPTESVEELISTYLFPHLTSRGQKASFLAYMVKCLLEAYRG 1393
            RKG  A+ ++  L++ C++PP ESVEE I  YLFP+L+   QKA FL YMVKCLL +Y G
Sbjct: 362  RKGKRALAYVDRLIKSCKFPPQESVEECIKEYLFPNLSGLKQKARFLGYMVKCLLLSYIG 421

Query: 1394 RRKVDNRDDMRNKXXXXXXXXXXXXXXVHIKHAERRMVKAMQRDLYKDREVQSIDHYLDA 1573
            RRKVDNRDD RNK              VHIKHAERRMVKA+QRDL  DR+V  I+HYLDA
Sbjct: 422  RRKVDNRDDFRNKRLDLAGELLERELRVHIKHAERRMVKALQRDLCGDRQVHPIEHYLDA 481

Query: 1574 SIITNGLSRAFSTGAWVHPFKRMERIAGVVASLRRTNPLQAVCDLRRTRQQVSYTGRVGD 1753
            SIITNGLSRAFSTG W HP+KRMER++GVVA+LRRTNPLQ   DLR+TRQQV+YTG+VGD
Sbjct: 482  SIITNGLSRAFSTGHWCHPYKRMERVSGVVATLRRTNPLQMTADLRKTRQQVTYTGKVGD 541

Query: 1754 ARYPHPSHWGKVCFLSTPDGENCGLVKNLASLGIVSTNILEHANLLKKFHESGME-LVDD 1930
            ARYP+PSHWGKVCFLSTPDGENCGLVKNLAS+G+VST +L    LL+     GM+ LVDD
Sbjct: 542  ARYPNPSHWGKVCFLSTPDGENCGLVKNLASMGLVSTTVL--MPLLETLFRCGMQKLVDD 599

Query: 1931 MSCLLDGKHRVFLDGDWVGVCKDSSSFVAKLRRRRRKLEVPYQIEIKRDKHHGEVRIFAD 2110
             +  L GK +V LDGDWVGVC+DS+ FV+KLRR+RR+ EVP+Q+E+KRD+   EVRIF+D
Sbjct: 600  CATSLHGKQKVLLDGDWVGVCEDSALFVSKLRRKRRRNEVPHQVEVKRDEQQDEVRIFSD 659

Query: 2111 AGRILRPLFVVQNLKKIKDLKG-----HFSFQSLLSSGIVEFIGPEEEEDCQTAWGIDYL 2275
            AGRI+RPL VV NLK IK L G      + FQ+LL  GI+E IGPEEEEDC+TAWG++YL
Sbjct: 660  AGRIMRPLLVVSNLKNIKALNGGVKGGDYGFQTLLDKGIIELIGPEEEEDCRTAWGVEYL 719

Query: 2276 FTAELENPPVKYSHCEFDSSFLLGLSTGIIPFANHDHARRVLYQSAKHSQQAIGYSTTNP 2455
              A+ ENPPV Y+HCE D SFLLGLS G+IPFANHDHARRVLYQS KHSQQAIG+ST NP
Sbjct: 720  LKADKENPPVNYTHCELDMSFLLGLSCGLIPFANHDHARRVLYQSEKHSQQAIGFSTVNP 779

Query: 2456 SIRVDTNSHQLYYPQRSLFRTMLSDCLGKSRYSDHHKGMVPRPDFFNGQCAIVAVNVHLG 2635
            +IRVDTN+HQLYYPQR LF TMLSD LGK + + H +GM+ RP+++NGQCAIVAVNVHLG
Sbjct: 780  NIRVDTNTHQLYYPQRPLFGTMLSDSLGKPKCARHQRGMLSRPEYYNGQCAIVAVNVHLG 839

Query: 2636 YNQEDSLVMNRASLERGMFRTEHVRSYKAEVENSEGAGKRLKADEIVSFGKIQSKIGRVD 2815
            YNQEDS+VMNRASLERGMFR+EHVRSYKAEV+N E  GK+ KA++ V+FGK QSKIGRVD
Sbjct: 840  YNQEDSVVMNRASLERGMFRSEHVRSYKAEVDNMEATGKKSKAEDSVNFGKTQSKIGRVD 899

Query: 2816 SLDDDGFPYIGANLQTGDIVIGKHAAAGVDHSIKLKHTERGMVQKVVLSANDEGKNFAVV 2995
             LDDDG PYIGANLQ+GDI+IGK A +G DHS+K+KHTE+GMVQKV+LSANDEGKNFAVV
Sbjct: 900  CLDDDGLPYIGANLQSGDIIIGKFAESGADHSVKMKHTEKGMVQKVLLSANDEGKNFAVV 959

Query: 2996 SLRQVRAPCLGDKFSSMHGQKGVLGFLESQENFPFNKDGIVPDIVINPHAFPSRQTPGQX 3175
            SLRQVR+PCLGDKFSSMHGQKGVLG+LESQENFPF   GIVPDIVINPHAFPSRQTPGQ 
Sbjct: 960  SLRQVRSPCLGDKFSSMHGQKGVLGYLESQENFPFTVQGIVPDIVINPHAFPSRQTPGQL 1019

Query: 3176 XXXXXXXXXXXXXXXKYATPFSTPSVEDITAQLHRLGYSRWGGERVYDGRTGEKVESLIF 3355
                           KYATPFS  SV+ I  QLH  G+SRWG ERVY+GRTGE V SLIF
Sbjct: 1020 LEAALGKGIALGGGEKYATPFSALSVDAILKQLHGRGFSRWGNERVYNGRTGEMVHSLIF 1079

Query: 3356 MGPTFYQRLTHMAEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAAN 3535
            MGPTFYQRL HMAEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAAN
Sbjct: 1080 MGPTFYQRLIHMAEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAAN 1139

Query: 3536 LHERLFTLSDSSQMHICRKCKKMANVIQRPVFGGRKIRGPYCRFCESVEDVVRVNVPYGA 3715
            LHERLFTLSDSSQMHIC KCK MANVIQRPV GG K+RGP+CRFCESVED+V+V VPYGA
Sbjct: 1140 LHERLFTLSDSSQMHICGKCKNMANVIQRPVPGG-KVRGPFCRFCESVEDIVKVGVPYGA 1198

Query: 3716 KLLCQELFSMGISLSFDTELC 3778
            KLLCQELFSMGISL FDTE+C
Sbjct: 1199 KLLCQELFSMGISLKFDTEIC 1219


>ref|XP_002283296.1| PREDICTED: DNA-directed RNA polymerase D subunit 2a-like [Vitis
            vinifera]
          Length = 1198

 Score = 1679 bits (4349), Expect = 0.0
 Identities = 822/1169 (70%), Positives = 964/1169 (82%), Gaps = 8/1169 (0%)
 Frame = +2

Query: 296  LQEVDKGFLKAFCKKASTAFFEQYGLISHQINSFNDFVDHGIQQLFDSIGEVVIEPGYDP 475
            + +++K +LK FCKK + +FF +YGLI HQINSFNDF+ +GIQ++FDS GE+ +EPGYDP
Sbjct: 38   IDDLNKEYLKTFCKKVAVSFFNEYGLIQHQINSFNDFIKNGIQRVFDSFGEIPVEPGYDP 97

Query: 476  SKRGDGEWRRATLKFGKVTLEPPTFWTGEKFSSADGAKDYLDLLPRHAHLQNMTYSSRIK 655
            SKRG+G+WR A+++FGKVTLE P  W GE    +DG K+ L+ LPRHA LQNMTYSSR+K
Sbjct: 98   SKRGEGDWRYASVRFGKVTLERPRVWAGE----SDG-KESLNFLPRHARLQNMTYSSRMK 152

Query: 656  VETHLQVYTEGLSRSDKFKTGVDT-VVEKTILNEYHTEVNFGRLPVMVKSDLCWMSKHEE 832
             + H QVYT+ L RSDK+KTG D   VEK ++ E + ++  GR+PVMVKS+LCWM+  E 
Sbjct: 153  AQVHFQVYTQKLVRSDKYKTGKDNKYVEKKVIFEDNRDILIGRIPVMVKSELCWMNGVER 212

Query: 833  RDCEFDQGGYFVIKGAEKTFIAQEQICLKRLWVAKEPTWSIAYRPVSKRKRVFIKMVP-K 1009
             DCE+D GGYF+IKGAEKTFIAQEQICLKRLWV+  PTW +AYRP+ KRKRV++K+ P K
Sbjct: 213  GDCEYDHGGYFLIKGAEKTFIAQEQICLKRLWVSSNPTWMVAYRPIWKRKRVYVKLEPPK 272

Query: 1010 VEHLVAGEKILTAYFYVAEIPVWLMFFALGVPNDREVVKLIGLDPEEDDIANILVPSIHD 1189
             E+   GEK+LT YF   EIP+W++FFALG  +D+EVV LI  + ++  I+NILV SIH+
Sbjct: 273  DENNRGGEKVLTVYFSSTEIPIWILFFALGASSDKEVVDLIDFNIDDAGISNILVASIHE 332

Query: 1190 ADKKFDG----FRKGGNAIKHIKELMQGCRYPPTESVEELISTYLFPHLTSRGQKASFLA 1357
            AD++ +     FR+ GNAI  + +L++ C++PP ES++E IS YLFP+ +   QKA FL 
Sbjct: 333  ADREAEKKGMYFRRQGNAISFVDKLVKSCKFPPGESIQECISKYLFPNFSGVKQKARFLG 392

Query: 1358 YMVKCLLEAYRGRRKVDNRDDMRNKXXXXXXXXXXXXXXVHIKHAERRMVKAMQRDLYKD 1537
            YMVKCLL+AY GRRK DNRDD RNK              VHI+HAERRMVKAMQR+LY D
Sbjct: 393  YMVKCLLQAYTGRRKCDNRDDFRNKRLELAGELLERELRVHIRHAERRMVKAMQRELYGD 452

Query: 1538 REVQSIDHYLDASIITNGLSRAFSTGAWVHPFKRMERIAGVVASLRRTNPLQAVCDLRRT 1717
            R+++ I++YLDASIITNGLSRAFSTG W HPFKRMERI+GVVA+LRRTNPLQ   D+R+T
Sbjct: 453  RDLRPIENYLDASIITNGLSRAFSTGQWSHPFKRMERISGVVATLRRTNPLQMTADMRKT 512

Query: 1718 RQQVSYTGRVGDARYPHPSHWGKVCFLSTPDGENCGLVKNLASLGIVSTNILEHANLLKK 1897
            RQQV YTG+VGDARYPHPSHWGKVCFLSTPDGENCGLVKNLA  G+VST +L+   L+ K
Sbjct: 513  RQQVQYTGKVGDARYPHPSHWGKVCFLSTPDGENCGLVKNLAITGLVSTEVLDP--LVDK 570

Query: 1898 FHESGME-LVDDMSCLLDGKHRVFLDGDWVGVCKDSSSFVAKLRRRRRKLEVPYQIEIKR 2074
              + GME LVDD S  L GK++VFLDGDWVGVC+D  SFV +LR +RR  E+P Q+EIKR
Sbjct: 571  LFDCGMEKLVDDTSTKLSGKNKVFLDGDWVGVCEDPISFVVELRTKRRHKELPQQVEIKR 630

Query: 2075 DKHHGEVRIFADAGRILRPLFVVQNLKKIKDLKGH-FSFQSLLSSGIVEFIGPEEEEDCQ 2251
            D+  GEVRIF+DAGRILRPL VV+NLKK+K  KG  F+FQSLL  GIVE IG EEEEDC 
Sbjct: 631  DEQQGEVRIFSDAGRILRPLLVVENLKKVKTFKGDDFTFQSLLDKGIVELIGAEEEEDCS 690

Query: 2252 TAWGIDYLFTAELENPPVKYSHCEFDSSFLLGLSTGIIPFANHDHARRVLYQSAKHSQQA 2431
            TAWGI YL     ++PPVKY+HCE D SFLLGLS GIIP+ANHDHARRVLYQS KHSQQA
Sbjct: 691  TAWGIKYLLKGH-DDPPVKYTHCELDMSFLLGLSCGIIPYANHDHARRVLYQSEKHSQQA 749

Query: 2432 IGYSTTNPSIRVDTNSHQLYYPQRSLFRTMLSDCLGKSRYSDHHKGMVPRPDFFNGQCAI 2611
            IG+STTNP+IRVDT SHQLYYPQR LFRTM+SDCLGK  YS+ HKG+VPRP++FNGQ AI
Sbjct: 750  IGFSTTNPNIRVDTLSHQLYYPQRPLFRTMISDCLGKPGYSEGHKGIVPRPEYFNGQIAI 809

Query: 2612 VAVNVHLGYNQEDSLVMNRASLERGMFRTEHVRSYKAEVENSEGAGKRLKADEIVSFGKI 2791
            VAVNVHLGYNQEDSLVMNRASLERGMFR+EH+RSYK+EV+N+E   K+ K+++ V FGK+
Sbjct: 810  VAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKSEVDNNESLDKKRKSEDSVHFGKM 869

Query: 2792 QSKIGRVDSLDDDGFPYIGANLQTGDIVIGKHAAAGVDHSIKLKHTERGMVQKVVLSAND 2971
            QSKIGRVDSLDDDGFP+IGANLQ GDIVIG+ A +GVDHSIKLKHTERGMVQKVV+SAND
Sbjct: 870  QSKIGRVDSLDDDGFPFIGANLQNGDIVIGRCAESGVDHSIKLKHTERGMVQKVVVSAND 929

Query: 2972 EGKNFAVVSLRQVRAPCLGDKFSSMHGQKGVLGFLESQENFPFNKDGIVPDIVINPHAFP 3151
            +GKNFAVVSLRQVR PCLGDKFSSMHGQKGVLGFLESQENFPF   GIVPDIVINPHAFP
Sbjct: 930  DGKNFAVVSLRQVRTPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFP 989

Query: 3152 SRQTPGQXXXXXXXXXXXXXXXXKYATPFSTPSVEDITAQLHRLGYSRWGGERVYDGRTG 3331
            SRQTPGQ                ++ATPFST SV+ I  QLHR G+SRWG ERVY+GRTG
Sbjct: 990  SRQTPGQLLEAALGKGIACGGLLRHATPFSTLSVDAIADQLHRAGFSRWGHERVYNGRTG 1049

Query: 3332 EKVESLIFMGPTFYQRLTHMAEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCL 3511
            E + SLIFMGPTFYQRL HMAEDKVKFRNTGPVHPLTRQPV+DRKRFGGIKFGEMERDCL
Sbjct: 1050 EMLRSLIFMGPTFYQRLIHMAEDKVKFRNTGPVHPLTRQPVSDRKRFGGIKFGEMERDCL 1109

Query: 3512 IAHGAAANLHERLFTLSDSSQMHICRKCKKMANVIQRPVFGGRKIRGPYCRFCESVEDVV 3691
            IAHGAAANLHERLFTLSDS+ MHICR+CK ++NVIQR V GGRK+RGPYCR+CES E++V
Sbjct: 1110 IAHGAAANLHERLFTLSDSAYMHICRRCKNISNVIQRSVAGGRKVRGPYCRYCESSEEIV 1169

Query: 3692 RVNVPYGAKLLCQELFSMGISLSFDTELC 3778
            +VNVPYGAKLLCQELFSMGISL F+T+LC
Sbjct: 1170 KVNVPYGAKLLCQELFSMGISLKFETQLC 1198


>emb|CBI21137.3| unnamed protein product [Vitis vinifera]
          Length = 1220

 Score = 1649 bits (4269), Expect = 0.0
 Identities = 812/1169 (69%), Positives = 953/1169 (81%), Gaps = 8/1169 (0%)
 Frame = +2

Query: 296  LQEVDKGFLKAFCKKASTAFFEQYGLISHQINSFNDFVDHGIQQLFDSIGEVVIEPGYDP 475
            + +++K +LK FCKK + +FF +YGLI HQINSFNDF+ +GIQ++FDS GE+ +EPGYDP
Sbjct: 74   IDDLNKEYLKTFCKKVAVSFFNEYGLIQHQINSFNDFIKNGIQRVFDSFGEIPVEPGYDP 133

Query: 476  SKRGDGEWRRATLKFGKVTLEPPTFWTGEKFSSADGAKDYLDLLPRHAHLQNMTYSSRIK 655
            SKRG+G+WR A+++FGKVTLE P  W GE    +DG K+ L+ LPRHA LQNMTYSSR+K
Sbjct: 134  SKRGEGDWRYASVRFGKVTLERPRVWAGE----SDG-KESLNFLPRHARLQNMTYSSRMK 188

Query: 656  VETHLQVYTEGLSRSDKFKTGVDT-VVEKTILNEYHTEVNFGRLPVMVKSDLCWMSKHEE 832
             + H QVYT+ L RSDK+KTG D   VEK ++ E + ++  GR+PVMVKS+LCWM+  E 
Sbjct: 189  AQVHFQVYTQKLVRSDKYKTGKDNKYVEKKVIFEDNRDILIGRIPVMVKSELCWMNGVER 248

Query: 833  RDCEFDQGGYFVIKGAEKTFIAQEQICLKRLWVAKEPTWSIAYRPVSKRKRVFIKMVP-K 1009
             DCE+D GGYF+IKGAEKTFIAQEQICLKRLWV+  PTW +AYRP+ KRKRV++K+ P K
Sbjct: 249  GDCEYDHGGYFLIKGAEKTFIAQEQICLKRLWVSSNPTWMVAYRPIWKRKRVYVKLEPPK 308

Query: 1010 VEHLVAGEKILTAYFYVAEIPVWLMFFALGVPNDREVVKLIGLDPEEDDIANILVPSIHD 1189
             E+   GEK+LT YF   EIP+W++FFALG  +D+EVV LI  + ++  I+NILV SIH+
Sbjct: 309  DENNRGGEKVLTVYFSSTEIPIWILFFALGASSDKEVVDLIDFNIDDAGISNILVASIHE 368

Query: 1190 ADKKFDG----FRKGGNAIKHIKELMQGCRYPPTESVEELISTYLFPHLTSRGQKASFLA 1357
            AD++ +     FR+ GNAI  + +L++ C++PP ES++E IS YLFP+ +   QKA FL 
Sbjct: 369  ADREAEKKGMYFRRQGNAISFVDKLVKSCKFPPGESIQECISKYLFPNFSGVKQKARFLG 428

Query: 1358 YMVKCLLEAYRGRRKVDNRDDMRNKXXXXXXXXXXXXXXVHIKHAERRMVKAMQRDLYKD 1537
            YMVKCLL+AY GRRK DNRDD RNK              VHI+HAERRMVKAMQR+LY D
Sbjct: 429  YMVKCLLQAYTGRRKCDNRDDFRNKRLELAGELLERELRVHIRHAERRMVKAMQRELYGD 488

Query: 1538 REVQSIDHYLDASIITNGLSRAFSTGAWVHPFKRMERIAGVVASLRRTNPLQAVCDLRRT 1717
            R+++ I++YLDASIITNGLSRAFSTG W HPFKRMERI+GVVA+LRRTNPLQ   D+R+T
Sbjct: 489  RDLRPIENYLDASIITNGLSRAFSTGQWSHPFKRMERISGVVATLRRTNPLQMTADMRKT 548

Query: 1718 RQQVSYTGRVGDARYPHPSHWGKVCFLSTPDGENCGLVKNLASLGIVSTNILEHANLLKK 1897
            RQQV YTG+VGDARYPHPSHWGKVCFLSTPDGENCGLVKNLA  G+VST +L+   L+ K
Sbjct: 549  RQQVQYTGKVGDARYPHPSHWGKVCFLSTPDGENCGLVKNLAITGLVSTEVLDP--LVDK 606

Query: 1898 FHESGME-LVDDMSCLLDGKHRVFLDGDWVGVCKDSSSFVAKLRRRRRKLEVPYQIEIKR 2074
              + GME LVDD S  L GK++VFLDGDWVGVC+D  SFV +LR +RR  E+P Q+EIKR
Sbjct: 607  LFDCGMEKLVDDTSTKLSGKNKVFLDGDWVGVCEDPISFVVELRTKRRHKELPQQVEIKR 666

Query: 2075 DKHHGEVRIFADAGRILRPLFVVQNLKKIKDLKGH-FSFQSLLSSGIVEFIGPEEEEDCQ 2251
            D+  GEVRIF+DAGRILRPL VV+NLKK+K  KG  F+FQSLL  GIVE IG EEEEDC 
Sbjct: 667  DEQQGEVRIFSDAGRILRPLLVVENLKKVKTFKGDDFTFQSLLDKGIVELIGAEEEEDCS 726

Query: 2252 TAWGIDYLFTAELENPPVKYSHCEFDSSFLLGLSTGIIPFANHDHARRVLYQSAKHSQQA 2431
            TAWGI YL     ++PPVKY+HCE D SFLLGLS GIIP+ANHDHARRVLYQS KHSQQA
Sbjct: 727  TAWGIKYLLKGH-DDPPVKYTHCELDMSFLLGLSCGIIPYANHDHARRVLYQSEKHSQQA 785

Query: 2432 IGYSTTNPSIRVDTNSHQLYYPQRSLFRTMLSDCLGKSRYSDHHKGMVPRPDFFNGQCAI 2611
            IG+STTNP+IRVDT SHQLYYPQR LFRTM+SD              +PRP++FNGQ AI
Sbjct: 786  IGFSTTNPNIRVDTLSHQLYYPQRPLFRTMISD--------------LPRPEYFNGQIAI 831

Query: 2612 VAVNVHLGYNQEDSLVMNRASLERGMFRTEHVRSYKAEVENSEGAGKRLKADEIVSFGKI 2791
            VAVNVHLGYNQEDSLVMNRASLERGMFR+EH+RSYK+EV+N+E   K+ K+++ V FGK+
Sbjct: 832  VAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKSEVDNNESLDKKRKSEDSVHFGKM 891

Query: 2792 QSKIGRVDSLDDDGFPYIGANLQTGDIVIGKHAAAGVDHSIKLKHTERGMVQKVVLSAND 2971
            QSKIGRVDSLDDDGFP+IGANLQ GDIVIG+ A +GVDHSIKLKHTERGMVQKVV+SAND
Sbjct: 892  QSKIGRVDSLDDDGFPFIGANLQNGDIVIGRCAESGVDHSIKLKHTERGMVQKVVVSAND 951

Query: 2972 EGKNFAVVSLRQVRAPCLGDKFSSMHGQKGVLGFLESQENFPFNKDGIVPDIVINPHAFP 3151
            +GKNFAVVSLRQVR PCLGDKFSSMHGQKGVLGFLESQENFPF   GIVPDIVINPHAFP
Sbjct: 952  DGKNFAVVSLRQVRTPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFP 1011

Query: 3152 SRQTPGQXXXXXXXXXXXXXXXXKYATPFSTPSVEDITAQLHRLGYSRWGGERVYDGRTG 3331
            SRQTPGQ                ++ATPFST SV+ I  QLHR G+SRWG ERVY+GRTG
Sbjct: 1012 SRQTPGQLLEAALGKGIACGGLLRHATPFSTLSVDAIADQLHRAGFSRWGHERVYNGRTG 1071

Query: 3332 EKVESLIFMGPTFYQRLTHMAEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCL 3511
            E + SLIFMGPTFYQRL HMAEDKVKFRNTGPVHPLTRQPV+DRKRFGGIKFGEMERDCL
Sbjct: 1072 EMLRSLIFMGPTFYQRLIHMAEDKVKFRNTGPVHPLTRQPVSDRKRFGGIKFGEMERDCL 1131

Query: 3512 IAHGAAANLHERLFTLSDSSQMHICRKCKKMANVIQRPVFGGRKIRGPYCRFCESVEDVV 3691
            IAHGAAANLHERLFTLSDS+ MHICR+CK ++NVIQR V GGRK+RGPYCR+CES E++V
Sbjct: 1132 IAHGAAANLHERLFTLSDSAYMHICRRCKNISNVIQRSVAGGRKVRGPYCRYCESSEEIV 1191

Query: 3692 RVNVPYGAKLLCQELFSMGISLSFDTELC 3778
            +VNVPYGAKLLCQELFSMGISL F+T+LC
Sbjct: 1192 KVNVPYGAKLLCQELFSMGISLKFETQLC 1220


>ref|XP_006442883.1| hypothetical protein CICLE_v10018562mg [Citrus clementina]
            gi|568850178|ref|XP_006478802.1| PREDICTED: DNA-directed
            RNA polymerases IV and V subunit 2-like [Citrus sinensis]
            gi|557545145|gb|ESR56123.1| hypothetical protein
            CICLE_v10018562mg [Citrus clementina]
          Length = 1198

 Score = 1623 bits (4202), Expect = 0.0
 Identities = 791/1171 (67%), Positives = 940/1171 (80%), Gaps = 10/1171 (0%)
 Frame = +2

Query: 296  LQEVDKGFLKAFCKKASTAFFEQYGLISHQINSFNDFVDHGIQQLFDSIGEVVIEPGYDP 475
            L+++ + FLK FC+KA+ +FF +YGL+SHQINS+N+F+ +G+Q+ FDS GE ++EPGYDP
Sbjct: 39   LRDLGEEFLKTFCRKAAVSFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDP 98

Query: 476  SKRGDGEWRRATLKFGKVTLEPPTFWTGEKFSSADGAKDYLDLLPRHAHLQNMTYSSRIK 655
            SK+G+GEWR A+++FG+VTL+ P+F+ G          D  D+ PRHA LQNMTYSSR+K
Sbjct: 99   SKKGEGEWRYASMRFGQVTLDKPSFFAGN-------GGDEHDMFPRHARLQNMTYSSRMK 151

Query: 656  VETHLQVYTEGLSRSDKFKTGVDTVVEKTILNEYHTEVNFGRLPVMVKSDLCWMSKHEER 835
            V+   QVYT+    SDKFKTG +  ++K +L++  T++  GR+PVMVKSDLCWM   E+ 
Sbjct: 152  VKVQFQVYTQKRVTSDKFKTGREQYIQKEVLSDEATDIIIGRIPVMVKSDLCWMKGVEKG 211

Query: 836  DCEFDQGGYFVIKGAEKTFIAQEQICLKRLWVAKEPTWSIAYRPVSKRKRVFIKMVP--K 1009
            DC+FD GGYF+IKGAEK F+AQEQICLKRLWV+    W++AY+  +KR R+ +++V   K
Sbjct: 212  DCDFDHGGYFIIKGAEKVFVAQEQICLKRLWVSNSMGWTVAYKSENKRNRLIVRLVDMSK 271

Query: 1010 VEHLVAGEKILTAYFYVAEIPVWLMFFALGVPNDREVVKLIGLDPEEDDIANILVPSIHD 1189
             E +  GEK+L+ YF   EIP+W++FFALGV +D+E+V LI    E+  I NIL  SIHD
Sbjct: 272  FEDIKGGEKVLSVYFLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIHD 331

Query: 1190 ADKKFDGFRKGGNAIKHIKELMQGCRYPPTESVEELISTYLFPHLTSRGQKASFLAYMVK 1369
            AD K D FRKG NA+K++ +L++G  +PP ES EE ++TYLFP L    QKA FL YMVK
Sbjct: 332  ADNKCDEFRKGRNALKYVDKLIKGTTFPPGESTEECMNTYLFPSLHGTKQKARFLGYMVK 391

Query: 1370 CLLEAYRGRRKVDNRDDMRNKXXXXXXXXXXXXXXVHIKHAERRMVKAMQRDLYKDREVQ 1549
            CLL+AY GRRK DNRDD RNK              VHI HA +RM KA+QRDLY DR V+
Sbjct: 392  CLLQAYSGRRKCDNRDDFRNKRLELAGELLERELKVHIAHARKRMAKALQRDLYGDRTVR 451

Query: 1550 SIDHYLDASIITNGLSRAFSTGAWVHPFKRMERIAGVVASLRRTNPLQAVCDLRRTRQQV 1729
             I++YLDASI+TNGLSRAFSTGAW HPFKR ERI+G+VA+L R NPLQ + DLRRTRQQV
Sbjct: 452  PIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVDLRRTRQQV 511

Query: 1730 SYTGRVGDARYPHPSHWGKVCFLSTPDGENCGLVKNLASLGIVSTNILEHANLLKKFHES 1909
             YTG+VGDARYPHPSHWGK+CFLSTPDGENCGLVKNL   G+VST+ILE   + ++   S
Sbjct: 512  QYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVSTSILE--PIFEQLFNS 569

Query: 1910 GME-LVDDMSCLLDGKHRVFLDGDWVGVCKDSSSFVAKLRRRRRKLEVPYQIEIKRDKHH 2086
            GME L DD S  L GK +VF+DGDW+GVCKDS SFV++LRR+RR+ E+P Q+EIKRD+  
Sbjct: 570  GMEKLADDASYSLGGKFKVFVDGDWIGVCKDSLSFVSELRRKRRRKELPTQVEIKRDELQ 629

Query: 2087 GEVRIFADAGRILRPLFVVQNLKKIKDLKG-HFSFQSLLSSGIVEFIGPEEEEDCQTAWG 2263
             EVRIF DAGRILRPL VV+N+ KIK L+G +++FQ+LL  GI+E +G EEEEDC TAWG
Sbjct: 630  SEVRIFMDAGRILRPLLVVENMGKIKSLEGKNYTFQALLDHGIIELVGTEEEEDCCTAWG 689

Query: 2264 IDYLFTAELENPPVKYSHCEFDSSFLLGLSTGIIPFANHDHARRVLYQSAKHSQQAIGYS 2443
            I YL     +  P+K++HCE D SFLLGLS GIIPFANHDHARRVLYQS KHS QAIG+ 
Sbjct: 690  IKYLLKDIEDKKPIKFTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSQKHSSQAIGFP 749

Query: 2444 TTNPSIRVDTNSHQLYYPQRSLFRTMLSDCLGKSRYSDHHKGMVPRPDFFNGQCAIVAVN 2623
            TTNPSIRVDT SHQL+YPQR LFRTM+SDCLGK  Y  +H  ++PRP+ +NGQ AIVAVN
Sbjct: 750  TTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNH--ILPRPELYNGQNAIVAVN 807

Query: 2624 VHLGYNQEDSLVMNRASLERGMFRTEHVRSYKAEVENSEGAGKRLKADEIVSFGKIQSKI 2803
            VHLGYNQEDSLVMNRASLERGMFR+EH+RSYKAEV+N E   KR  +D++V+FGKIQSKI
Sbjct: 808  VHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQVKRRSSDDMVNFGKIQSKI 867

Query: 2804 GRVDSLDDDGFPYIGANLQTGDIVIGKHAAAGVDHSIKLKHTERGMVQKVVLSANDEGKN 2983
            GRVDSLDDDGFP+IGANLQ GDIVIGK+A +G DHSIKLKHTERGMVQKVVLS+ND+GKN
Sbjct: 868  GRVDSLDDDGFPFIGANLQCGDIVIGKYADSGADHSIKLKHTERGMVQKVVLSSNDDGKN 927

Query: 2984 FAVVSLRQVRAPCLGDKFSSMHGQKGVLGFLESQENFPFNKDGIVPDIVINPHAFPSRQT 3163
            F+VVSLRQVR+PCLGDKFSSMHGQKGVLGFLESQENFPF   GIVPDIVINPHAFPSRQT
Sbjct: 928  FSVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQT 987

Query: 3164 PGQ------XXXXXXXXXXXXXXXXKYATPFSTPSVEDITAQLHRLGYSRWGGERVYDGR 3325
            PGQ                      +YATPF+TPSV+ IT QLHR G+S+WG ER+YDGR
Sbjct: 988  PGQLLEAALGKGIAALGKGICSGLKRYATPFATPSVDAITEQLHRAGFSKWGTERLYDGR 1047

Query: 3326 TGEKVESLIFMGPTFYQRLTHMAEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERD 3505
            TGE V SLIF+GPTFYQRL HM+EDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERD
Sbjct: 1048 TGEMVRSLIFIGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERD 1107

Query: 3506 CLIAHGAAANLHERLFTLSDSSQMHICRKCKKMANVIQRPVFGGRKIRGPYCRFCESVED 3685
            CLIAHGAAANLHERLFTLSDS QMHICRKCK +ANVIQR V GGRK+RGPYCR C+S +D
Sbjct: 1108 CLIAHGAAANLHERLFTLSDSYQMHICRKCKNVANVIQRVVGGGRKVRGPYCRICDSGDD 1167

Query: 3686 VVRVNVPYGAKLLCQELFSMGISLSFDTELC 3778
            +V+ NVPYGAKLLCQELFSMGI+L FDTE C
Sbjct: 1168 IVKANVPYGAKLLCQELFSMGITLKFDTEFC 1198


>ref|XP_007011717.1| DNA-directed RNA polymerase isoform 1 [Theobroma cacao]
            gi|508782080|gb|EOY29336.1| DNA-directed RNA polymerase
            isoform 1 [Theobroma cacao]
          Length = 1184

 Score = 1620 bits (4196), Expect = 0.0
 Identities = 795/1165 (68%), Positives = 939/1165 (80%), Gaps = 4/1165 (0%)
 Frame = +2

Query: 296  LQEVDKGFLKAFCKKASTAFFEQYGLISHQINSFNDFVDHGIQQLFDSIGEVVIEPGYDP 475
            +Q++ + FL+ FCK+A+ +FF++YGLISHQ+NS+N F+ +G+Q  FDS GE +I  GYDP
Sbjct: 29   VQQLGEEFLRGFCKQAAVSFFKEYGLISHQLNSYNAFIKYGLQNTFDSFGEFLIHSGYDP 88

Query: 476  SKRGDGEWRRATLKFGKVTLEPPTFWTGEKFSSADGAKDYLDLLPRHAHLQNMTYSSRIK 655
            SK+G+G+WR A ++FGKVT+E PTFW       A    + L++LPRHA LQNMTYSSR+K
Sbjct: 89   SKKGEGDWRHARVRFGKVTVERPTFW-------AVSGGNELNMLPRHARLQNMTYSSRMK 141

Query: 656  VETHLQVYTEGLSRSDKFKTGVDTVVEKTILNEYHTEVNFGRLPVMVKSDLCWMSKHEER 835
            V   LQVYT    +SDKFKTG +  VE+ ++ + + ++  GR+PVMV+SDLCWM++ E+ 
Sbjct: 142  VNVDLQVYTAKSVKSDKFKTGREEFVEEEVVYQDNRDIIIGRIPVMVRSDLCWMNEVEKA 201

Query: 836  DCEFDQGGYFVIKGAEKTFIAQEQICLKRLWVAKEPTWSIAYRPVSKRKRVFIKMVP--K 1009
            DC+FD GGYF+IKG EK FIAQEQI +KRLW++    W+IAYR   KR R+ I++V   K
Sbjct: 202  DCDFDHGGYFLIKGTEKIFIAQEQISMKRLWISNSQGWTIAYRSEVKRNRLIIRLVENSK 261

Query: 1010 VEHLVAGEKILTAYFYVAEIPVWLMFFALGVPNDREVVKLIGLDPEEDDIANILVPSIHD 1189
            VE++  GEK+LT YF   EIPVW++FFALGV +D+EVV LI  +  +  I NIL  SI +
Sbjct: 262  VEYIKGGEKVLTVYFLSTEIPVWVLFFALGVSSDKEVVNLIDYESNDSSITNILFASIRN 321

Query: 1190 ADKKFDGFRKGGNAIKHIKELMQGCRYPPTESVEELISTYLFPHLTSRGQKASFLAYMVK 1369
            AD K   F +G NAI ++ +L++  R+PP E +EE +STYLFP L S  QKA FL YMVK
Sbjct: 322  ADGKCYKFCQGRNAIDYVGKLVKDTRFPPEEGIEECLSTYLFPTLRSFKQKARFLGYMVK 381

Query: 1370 CLLEAYRGRRKVDNRDDMRNKXXXXXXXXXXXXXXVHIKHAERRMVKAMQRDLYKDREVQ 1549
            CLL+AY GR K DNRDD RNK              VHI HA RRM K +QRDLY DR V+
Sbjct: 382  CLLQAYTGRLKCDNRDDFRNKRLELAGELLERELKVHIAHARRRMAKTLQRDLYADRTVR 441

Query: 1550 SIDHYLDASIITNGLSRAFSTGAWVHPFKRMERIAGVVASLRRTNPLQAVCDLRRTRQQV 1729
             I+HYLDASI+TNGLSRAFSTGAW HP+KRMERI+GVVA+L R NPLQ + DLR+TRQQV
Sbjct: 442  PIEHYLDASIVTNGLSRAFSTGAWSHPYKRMERISGVVANLGRANPLQTMVDLRKTRQQV 501

Query: 1730 SYTGRVGDARYPHPSHWGKVCFLSTPDGENCGLVKNLASLGIVSTNILEHANLLKKFHES 1909
             YTG+VGDARYPHPSHWGKVCFLSTPDGENCGLVKNLA+ G+VSTNI+E  +++ K  +S
Sbjct: 502  QYTGKVGDARYPHPSHWGKVCFLSTPDGENCGLVKNLATTGLVSTNIME--SIVDKLFDS 559

Query: 1910 GME-LVDDMSCLLDGKHRVFLDGDWVGVCKDSSSFVAKLRRRRRKLEVPYQIEIKRDKHH 2086
            GME LV+D    LDGK +VFL+G+WVGVC+DS SF A++RR+RR  E P+Q+EIKRD+H 
Sbjct: 560  GMEELVNDTCSSLDGKDKVFLNGEWVGVCEDSLSFAAEVRRKRRSKEFPHQVEIKRDEHK 619

Query: 2087 GEVRIFADAGRILRPLFVVQNLKKIKDLKG-HFSFQSLLSSGIVEFIGPEEEEDCQTAWG 2263
            GEVRIF+D GRILRPL VV NL +IK  KG +++FQ+LL  GI+E +G EEEEDC+TAW 
Sbjct: 620  GEVRIFSDGGRILRPLLVVDNLNRIKAFKGENYTFQALLEGGIIELVGTEEEEDCRTAWS 679

Query: 2264 IDYLFTAELENPPVKYSHCEFDSSFLLGLSTGIIPFANHDHARRVLYQSAKHSQQAIGYS 2443
            I YL T      PVKY+HCE D SFLLGLS GIIPFANHDHARRVLYQ+ KHSQQAIG+S
Sbjct: 680  IKYLLTDVEGKQPVKYTHCELDMSFLLGLSCGIIPFANHDHARRVLYQAQKHSQQAIGFS 739

Query: 2444 TTNPSIRVDTNSHQLYYPQRSLFRTMLSDCLGKSRYSDHHKGMVPRPDFFNGQCAIVAVN 2623
            TTNP+IRVDT SHQLYYPQR LFRTM SDCLGK  +    KG++P+P+ +NGQ AIVAVN
Sbjct: 740  TTNPNIRVDTLSHQLYYPQRPLFRTMTSDCLGKLGHPLGQKGVLPKPELYNGQNAIVAVN 799

Query: 2624 VHLGYNQEDSLVMNRASLERGMFRTEHVRSYKAEVENSEGAGKRLKADEIVSFGKIQSKI 2803
            VHLGYNQEDSLVMNR+SLERGMFR+EHVRSYKAEV+N E   KR K+++IV+FGKIQSKI
Sbjct: 800  VHLGYNQEDSLVMNRSSLERGMFRSEHVRSYKAEVDNKEIQDKRRKSEDIVNFGKIQSKI 859

Query: 2804 GRVDSLDDDGFPYIGANLQTGDIVIGKHAAAGVDHSIKLKHTERGMVQKVVLSANDEGKN 2983
            GRVDSLDDDGFPY+GANLQ GDIVIG+ A +G DHSIKLKHTERGMVQKVVLS+ND+GKN
Sbjct: 860  GRVDSLDDDGFPYVGANLQCGDIVIGRCAESGADHSIKLKHTERGMVQKVVLSSNDDGKN 919

Query: 2984 FAVVSLRQVRAPCLGDKFSSMHGQKGVLGFLESQENFPFNKDGIVPDIVINPHAFPSRQT 3163
            +AVVSLRQVR+PCLGDKFSSMHGQKGVLGFLESQENFPF   GIVPDIVINPHAFPSRQT
Sbjct: 920  YAVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTTQGIVPDIVINPHAFPSRQT 979

Query: 3164 PGQXXXXXXXXXXXXXXXXKYATPFSTPSVEDITAQLHRLGYSRWGGERVYDGRTGEKVE 3343
            PGQ                KYATPFST SV+ IT QLHR G+SRWG ERVY+GRTGE V 
Sbjct: 980  PGQLLEAALGKGIACGGSMKYATPFSTISVDAITEQLHRAGFSRWGNERVYNGRTGEMVR 1039

Query: 3344 SLIFMGPTFYQRLTHMAEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHG 3523
            SLIFMGPTFYQRL HMAEDKVKFRNTGPVHPLTRQPVADRKR+GGIKFGEMERDCLIAHG
Sbjct: 1040 SLIFMGPTFYQRLIHMAEDKVKFRNTGPVHPLTRQPVADRKRYGGIKFGEMERDCLIAHG 1099

Query: 3524 AAANLHERLFTLSDSSQMHICRKCKKMANVIQRPVFGGRKIRGPYCRFCESVEDVVRVNV 3703
            A+ANLHERL TLSDSSQMH+CR CK +ANVI+R V GGRKIRGPYCR C+SV+D+VRVNV
Sbjct: 1100 ASANLHERLVTLSDSSQMHVCRNCKNVANVIERAVPGGRKIRGPYCRGCQSVDDIVRVNV 1159

Query: 3704 PYGAKLLCQELFSMGISLSFDTELC 3778
            PYGAKLLCQELFSMGI+L F+T+LC
Sbjct: 1160 PYGAKLLCQELFSMGINLKFETQLC 1184


>ref|XP_002324332.2| DNA-directed RNA polymerase family protein [Populus trichocarpa]
            gi|550317882|gb|EEF02897.2| DNA-directed RNA polymerase
            family protein [Populus trichocarpa]
          Length = 1181

 Score = 1602 bits (4147), Expect = 0.0
 Identities = 786/1164 (67%), Positives = 935/1164 (80%), Gaps = 4/1164 (0%)
 Frame = +2

Query: 296  LQEVDKGFLKAFCKKASTAFFEQYGLISHQINSFNDFVDHGIQQLFDSIGEVVIEPGYDP 475
            L E+ K  L++FCKKA++ FF++YGLISHQINS+N F++ G+Q++FDS GEV +EPGYD 
Sbjct: 36   LNELGKETLQSFCKKAASLFFDEYGLISHQINSYNAFINSGLQRVFDSFGEVAVEPGYDS 95

Query: 476  SKRGDGEWRRATLKFGKVTLEPPTFWTGEKFSSADGAKDYLDLLPRHAHLQNMTYSSRIK 655
            SK+ DGEWRRA+++FGKVTL+ P+FW G   +S+D   +   + PRHA LQNMTYS+R+K
Sbjct: 96   SKQKDGEWRRASVRFGKVTLDRPSFWGG---TSSDAEHN---MFPRHARLQNMTYSARMK 149

Query: 656  VETHLQVYTEGLSRSDKFKTGVDTVVEKTILNEYHTEVNFGRLPVMVKSDLCWMSKHEER 835
            +  ++QVYT+ + RSDKFKTG+D VV+K +++  + E+  GR+PVMVKSDLCW++  E+ 
Sbjct: 150  IHVNVQVYTQTVGRSDKFKTGIDKVVQKNVVHTENREIIIGRIPVMVKSDLCWLTTVEKG 209

Query: 836  DCEFDQGGYFVIKGAEKTFIAQEQICLKRLWVAKEPTWSIAYRPVSKRKRVFIKMVP--K 1009
            DC+FD GGYF+IKGAEK FIAQEQIC+KRLW++    W+++Y+   KR R+ +++V   K
Sbjct: 210  DCDFDHGGYFLIKGAEKVFIAQEQICMKRLWISNSQGWTVSYKSEVKRNRLIVRLVELSK 269

Query: 1010 VEHLVAGEKILTAYFYVAEIPVWLMFFALGVPNDREVVKLIGLDPEEDDIANILVPSIHD 1189
            +E++   +K L  YF   EIP+W++FFALGV +D+EV+ LI     +  I NI   SIHD
Sbjct: 270  LEYIKGEKKGLCVYFLSTEIPLWILFFALGVRSDKEVIDLIDYASNDASIVNIFFASIHD 329

Query: 1190 ADKKFDGFRKGGNAIKHIKELMQGCRYPPTESVEELISTYLFPHLTSRGQKASFLAYMVK 1369
            AD+K + FR+   A+ ++ +L++  R+PP ES+E+ IS YLFP L SR  KA FL YMVK
Sbjct: 330  ADEKCEHFRREDRALDYVDKLLKKTRFPPKESIEDAISAYLFPRLNSRRHKARFLGYMVK 389

Query: 1370 CLLEAYRGRRKVDNRDDMRNKXXXXXXXXXXXXXXVHIKHAERRMVKAMQRDLYKDREVQ 1549
            CLLEAY G RK DNRD  RNK              VH+ HA RRM KA+QRDLY DR+V 
Sbjct: 390  CLLEAYTGHRKCDNRDSFRNKRFELASELLERELKVHVSHALRRMTKALQRDLYGDRDVH 449

Query: 1550 SIDHYLDASIITNGLSRAFSTGAWVHPFKRMERIAGVVASLRRTNPLQAVCDLRRTRQQV 1729
             I+HYLDASI+TNGL+RAFSTGAW HPFK MER++GVV +L R NPLQ + DLR+TRQQV
Sbjct: 450  PIEHYLDASIVTNGLTRAFSTGAWCHPFKWMERVSGVVGNLGRANPLQTMIDLRKTRQQV 509

Query: 1730 SYTGRVGDARYPHPSHWGKVCFLSTPDGENCGLVKNLASLGIVSTNILEHANLLKKFHES 1909
             YTG+VGDARYPHPSHWG+VCFLSTPDGENCGLVKNLA  G+VSTNI E  +L+ K  +S
Sbjct: 510  LYTGKVGDARYPHPSHWGRVCFLSTPDGENCGLVKNLAVTGVVSTNISE--SLVDKLFDS 567

Query: 1910 GME-LVDDMSCLLDGKHRVFLDGDWVGVCKDSSSFVAKLRRRRRKLEVPYQIEIKRDKHH 2086
            GME LVDD    LDGKH+VFL+G+WVGVC+DS  FV +LR  RR+ E+PYQ+EIKRD+  
Sbjct: 568  GMEKLVDDTYTKLDGKHKVFLNGEWVGVCEDSCLFVGELRSMRRRRELPYQVEIKRDEQQ 627

Query: 2087 GEVRIFADAGRILRPLFVVQNLKKIKDLK-GHFSFQSLLSSGIVEFIGPEEEEDCQTAWG 2263
             EVRIF+DAGRILRPL VV+NL KIK  K G++ F SLL  GI+EFIG EEEEDC TAWG
Sbjct: 628  REVRIFSDAGRILRPLLVVENLDKIKAFKGGNYIFTSLLDKGIIEFIGTEEEEDCCTAWG 687

Query: 2264 IDYLFTAELENPPVKYSHCEFDSSFLLGLSTGIIPFANHDHARRVLYQSAKHSQQAIGYS 2443
            I +L        P+KYSHCE D SFLLGLS GIIPFANHDHARRVLYQ+ KHSQQAIG+S
Sbjct: 688  IKFLLADIEGKQPMKYSHCELDMSFLLGLSCGIIPFANHDHARRVLYQAQKHSQQAIGFS 747

Query: 2444 TTNPSIRVDTNSHQLYYPQRSLFRTMLSDCLGKSRYSDHHKGMVPRPDFFNGQCAIVAVN 2623
            TTNP+IRVDT SHQL+YPQR LFRTM+SDCL           ++P+P+ FNGQ AIVAVN
Sbjct: 748  TTNPNIRVDTLSHQLHYPQRPLFRTMISDCL-----------VLPKPELFNGQNAIVAVN 796

Query: 2624 VHLGYNQEDSLVMNRASLERGMFRTEHVRSYKAEVENSEGAGKRLKADEIVSFGKIQSKI 2803
            VHLGYNQEDSLVMNRASLERGMFR+EH+RSYKAEV+N E   KR K+++ ++FGKIQSKI
Sbjct: 797  VHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKELTDKRRKSEDSITFGKIQSKI 856

Query: 2804 GRVDSLDDDGFPYIGANLQTGDIVIGKHAAAGVDHSIKLKHTERGMVQKVVLSANDEGKN 2983
            GRVDSLDDDGFP+IGAN+Q+GDIVIGK A +G DHS+KLKHTERGMVQKVVLS+NDEGKN
Sbjct: 857  GRVDSLDDDGFPFIGANMQSGDIVIGKCAESGADHSVKLKHTERGMVQKVVLSSNDEGKN 916

Query: 2984 FAVVSLRQVRAPCLGDKFSSMHGQKGVLGFLESQENFPFNKDGIVPDIVINPHAFPSRQT 3163
            FAVVSLRQVR+PCLGDKFSSMHGQKGVLGFLESQENFPF   G+VPDIVINPHAFPSRQT
Sbjct: 917  FAVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGVVPDIVINPHAFPSRQT 976

Query: 3164 PGQXXXXXXXXXXXXXXXXKYATPFSTPSVEDITAQLHRLGYSRWGGERVYDGRTGEKVE 3343
            PGQ                +YATPFST SV+DI  QLHR  +SRWG ERVY+GRTGE V 
Sbjct: 977  PGQLLEAALGKGIACGGSKRYATPFSTLSVDDIIDQLHRAKFSRWGNERVYNGRTGEMVR 1036

Query: 3344 SLIFMGPTFYQRLTHMAEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHG 3523
            SLIFMGPTFYQRL HMAEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHG
Sbjct: 1037 SLIFMGPTFYQRLVHMAEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHG 1096

Query: 3524 AAANLHERLFTLSDSSQMHICRKCKKMANVIQRPVFGGRKIRGPYCRFCESVEDVVRVNV 3703
            A+ANLHERLFTLSDSS+MHIC+KCK +ANVIQR V GGRKIRGPYCR CESV+D+V+V+V
Sbjct: 1097 ASANLHERLFTLSDSSEMHICQKCKNVANVIQRGVPGGRKIRGPYCRVCESVDDLVKVSV 1156

Query: 3704 PYGAKLLCQELFSMGISLSFDTEL 3775
            PYGAKLLCQELFSMGISL FDT +
Sbjct: 1157 PYGAKLLCQELFSMGISLKFDTRV 1180


>ref|XP_002515428.1| DNA-directed RNA polymerase subunit, putative [Ricinus communis]
            gi|223545372|gb|EEF46877.1| DNA-directed RNA polymerase
            subunit, putative [Ricinus communis]
          Length = 1203

 Score = 1598 bits (4138), Expect = 0.0
 Identities = 802/1216 (65%), Positives = 944/1216 (77%), Gaps = 4/1216 (0%)
 Frame = +2

Query: 143  IEMDREWDFLEEAGPSSSSIRDKFSKGSTRMXXXXXXXXXXXXXXXXADCVLQEVDKGFL 322
            +E D   +   + G SS +  +K  K ST M                +   L ++ +  L
Sbjct: 2    VEYDDAMEQDNDIGTSSKT--EKLFKASTDMDIDFDSDSGSDCDFMDSSTSLTDIGEAKL 59

Query: 323  KAFCKKASTAFFEQYGLISHQINSFNDFVDHGIQQLFDSIGEVVIEPGYDPSKRGDGEWR 502
            K FC KA+T FF +YGLISHQINS+NDF+++GIQ+ FDS GE+V+EPGYDPSK+G+ EWR
Sbjct: 60   KDFCNKAATLFFNEYGLISHQINSYNDFINNGIQKAFDSFGELVVEPGYDPSKKGENEWR 119

Query: 503  RATLKFGKVTLEPPTFWTGEKFSSADGAKDYLDLLPRHAHLQNMTYSSRIKVETHLQVYT 682
             A++KFGKV LE PTFW+G     AD  K    +LPRHA LQNMTYSS++KV   ++VYT
Sbjct: 120  YASVKFGKVALEKPTFWSG-----ADEHK----MLPRHARLQNMTYSSKMKVNVSVEVYT 170

Query: 683  EGLSRSDKFKTGVDTVVEKTILNEYHTEVNFGRLPVMVKSDLCWMSKHEERDCEFDQGGY 862
              + RSDKFKTG D  V+K +LN  +  +  G LPVMVKSDLCWM   E+ DC+FD GGY
Sbjct: 171  RKVVRSDKFKTGKDQYVDKEVLNTDNRNITIGSLPVMVKSDLCWMKTAEKGDCDFDHGGY 230

Query: 863  FVIKGAEKTFIAQEQICLKRLWVAKEPTWSIAYRPVSKRKRVFIKMV--PKVEHLVAGEK 1036
            F+IKGAEK FIAQEQICLKRLW++    W+++Y+   KR R+ +++V    +E + A +K
Sbjct: 231  FLIKGAEKVFIAQEQICLKRLWISNIQGWTVSYKSEIKRNRLIVRLVGLSALEDVKAEKK 290

Query: 1037 ILTAYFYVAEIPVWLMFFALGVPNDREVVKLIGLDPEEDDIANILVPSIHDADKKFDGFR 1216
             LT YF   EIP+W++FFALGV +D+EV+ LIG    +  I NI   SIHDAD+K +GFR
Sbjct: 291  CLTVYFLSTEIPLWILFFALGVTSDKEVIDLIGYGSNDARIVNIFFASIHDADEKTEGFR 350

Query: 1217 KGGNAIKHIKELMQGCRYPPTESVEELISTYLFPHLTSRGQKASFLAYMVKCLLEAYRGR 1396
            +G  A++++   ++G R+PP E+ E+    YLFP L S  QKA FL YMVKCLL+AY G+
Sbjct: 351  RGKEALEYVVRQIRGTRFPPGEN-EDFFLLYLFPTLHSLRQKARFLGYMVKCLLQAYNGQ 409

Query: 1397 RKVDNRDDMRNKXXXXXXXXXXXXXXVHIKHAERRMVKAMQRDLYKDREVQSIDHYLDAS 1576
            RK +N D  RNK              VHI HA RRM KA+Q+DLY DR+V+ I+HYLDAS
Sbjct: 410  RKCNNWDSFRNKRFELAKELLERELKVHIAHARRRMAKALQKDLYGDRDVRPIEHYLDAS 469

Query: 1577 IITNGLSRAFSTGAWVHPFKRMERIAGVVASLRRTNPLQAVCDLRRTRQQVSYTGRVGDA 1756
            I+TNGLSRAFSTGAW HP+KRMERI+GVVA+L R NPLQ + DLR+TR  V YTG+VGDA
Sbjct: 470  IVTNGLSRAFSTGAWSHPYKRMERISGVVANLGRANPLQTMVDLRKTRYHVQYTGKVGDA 529

Query: 1757 RYPHPSHWGKVCFLSTPDGENCGLVKNLASLGIVSTNILEHANLLKKFHESGMELV-DDM 1933
            R+PHPSHWG+VCFLSTPDGENCGLVKNLA+ G+VS NILE   L+ K    GME V +D 
Sbjct: 530  RFPHPSHWGRVCFLSTPDGENCGLVKNLATTGLVSVNILEP--LIDKLIARGMEKVPEDS 587

Query: 1934 SCLLDGKHRVFLDGDWVGVCKDSSSFVAKLRRRRRKLEVPYQIEIKRDKHHGEVRIFADA 2113
               LD K +VFL+G+WVGVC+DS  FVA+LRR RR+ ++P Q+EIKRD+   EVRIF+DA
Sbjct: 588  HSDLDEKDKVFLNGEWVGVCEDSRLFVAELRRLRRRKKLPQQVEIKRDEQQQEVRIFSDA 647

Query: 2114 GRILRPLFVVQNLKKIKDLKG-HFSFQSLLSSGIVEFIGPEEEEDCQTAWGIDYLFTAEL 2290
            GRILRPL VVQNL KI+  KG + +FQSLL  GI+EF+G EEEEDC TAWGI +L +   
Sbjct: 648  GRILRPLLVVQNLHKIEAFKGGNCTFQSLLDKGIIEFVGTEEEEDCSTAWGIKFLLSGVD 707

Query: 2291 ENPPVKYSHCEFDSSFLLGLSTGIIPFANHDHARRVLYQSAKHSQQAIGYSTTNPSIRVD 2470
                +KY+HCE D SFLLGLS GIIPFANHDHARRVLYQ+ KHSQQAIG+ TTNP+IRVD
Sbjct: 708  GKQSLKYTHCELDMSFLLGLSCGIIPFANHDHARRVLYQAQKHSQQAIGFPTTNPNIRVD 767

Query: 2471 TNSHQLYYPQRSLFRTMLSDCLGKSRYSDHHKGMVPRPDFFNGQCAIVAVNVHLGYNQED 2650
            T SHQLYYPQR LFRT+ SDCLGK   +  H G+VP+P+ +NGQ AIVAVNVHLGYNQED
Sbjct: 768  TLSHQLYYPQRPLFRTVTSDCLGKPGDTRGHNGIVPKPELYNGQNAIVAVNVHLGYNQED 827

Query: 2651 SLVMNRASLERGMFRTEHVRSYKAEVENSEGAGKRLKADEIVSFGKIQSKIGRVDSLDDD 2830
            SLVMNRASLERGMFR+EH+RSYKA+V+N E   KR K D+ V+FGKI SKIGRVDSLDDD
Sbjct: 828  SLVMNRASLERGMFRSEHIRSYKADVDNKELLDKRRKYDDNVNFGKIPSKIGRVDSLDDD 887

Query: 2831 GFPYIGANLQTGDIVIGKHAAAGVDHSIKLKHTERGMVQKVVLSANDEGKNFAVVSLRQV 3010
            GFP+IGANLQ+GDIVIG+ A +G DHSIKLKHTERGMVQKVVLS+NDEGKNFAVVSLRQV
Sbjct: 888  GFPFIGANLQSGDIVIGRCAESGPDHSIKLKHTERGMVQKVVLSSNDEGKNFAVVSLRQV 947

Query: 3011 RAPCLGDKFSSMHGQKGVLGFLESQENFPFNKDGIVPDIVINPHAFPSRQTPGQXXXXXX 3190
            R+PCLGDKFSSMHGQKGVLGFLESQENFPF + GIVPDIVINPH+FPSRQTPGQ      
Sbjct: 948  RSPCLGDKFSSMHGQKGVLGFLESQENFPFTRQGIVPDIVINPHSFPSRQTPGQLLEAAL 1007

Query: 3191 XXXXXXXXXXKYATPFSTPSVEDITAQLHRLGYSRWGGERVYDGRTGEKVESLIFMGPTF 3370
                      KYATPFST SVE IT QLHR G+SRWG ERVY+GRTGE V SLIFMGPTF
Sbjct: 1008 GKGIACGGSMKYATPFSTLSVEAITNQLHRAGFSRWGNERVYNGRTGEMVRSLIFMGPTF 1067

Query: 3371 YQRLTHMAEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERL 3550
            YQRL HMAEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGA+ANLHERL
Sbjct: 1068 YQRLIHMAEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGASANLHERL 1127

Query: 3551 FTLSDSSQMHICRKCKKMANVIQRPVFGGRKIRGPYCRFCESVEDVVRVNVPYGAKLLCQ 3730
            FTLSDSSQMHIC+KCK +ANVIQR V GGRKIRGPYCR CESV+++V+VNVPYGAKLLCQ
Sbjct: 1128 FTLSDSSQMHICQKCKNVANVIQRAVPGGRKIRGPYCRVCESVDEIVKVNVPYGAKLLCQ 1187

Query: 3731 ELFSMGISLSFDTELC 3778
            ELFSMGISL F+T LC
Sbjct: 1188 ELFSMGISLKFETRLC 1203


>ref|XP_007225442.1| hypothetical protein PRUPE_ppa000410mg [Prunus persica]
            gi|462422378|gb|EMJ26641.1| hypothetical protein
            PRUPE_ppa000410mg [Prunus persica]
          Length = 1200

 Score = 1589 bits (4114), Expect = 0.0
 Identities = 784/1169 (67%), Positives = 930/1169 (79%), Gaps = 8/1169 (0%)
 Frame = +2

Query: 296  LQEVDKGFLKAFCKKASTAFFEQYGLISHQINSFNDFVDHGIQQLFDSIGEVVIEPGYDP 475
            + ++ +GFLK FCK+A+ AFF +YGLISHQINS+NDF+ +GIQ++FDS GE+++EPGYDP
Sbjct: 43   IHDLGEGFLKFFCKEAAIAFFNEYGLISHQINSYNDFIKNGIQRVFDSFGEIIVEPGYDP 102

Query: 476  SKRGDGEWRRATLKFGKVTLEPPTFWTGEKFSSADGAKDYLDLLPRHAHLQNMTYSSRIK 655
            SK+G+ EWR A++KFGKVTL  P+FW G     +D  K+Y  +LPRHA LQNM+Y+S++K
Sbjct: 103  SKKGESEWRYASVKFGKVTLGMPSFWGG-----SDDEKEY-KMLPRHARLQNMSYASKMK 156

Query: 656  VETHLQVYTEGLSRSDKFKTGVDTVVEKTILNEYHTEVNFGRLPVMVKSDLCWMSKHEER 835
            V   ++VYT+ L  SDKFKTG    ++K IL+    ++  G +PVMVKSDLCWM   E+ 
Sbjct: 157  VNITVEVYTQKLVSSDKFKTGKSQYLDKQILSTDTRDIIIGSVPVMVKSDLCWMKDFEKG 216

Query: 836  DCEFDQGGYFVIKGAEKTFIAQEQICLKRLWVAKEPTWSIAYRPVSKRKRVFIKMV--PK 1009
            DC+FD GGYF+IKGAEKTFIAQEQ CLKRL +      ++AYR   KR R+ I++V   K
Sbjct: 217  DCDFDHGGYFIIKGAEKTFIAQEQSCLKRLLITNNQGLTVAYRSEVKRHRLIIRLVGISK 276

Query: 1010 VEHLVAGEKILTAYFYVAEIPVWLMFFALGVPNDREVVKLIGLDPEEDDIANILVPSIHD 1189
            +E++   EK+LT YF   EIPVW+ FFALGV +DREV+ LI  D E+  I+NIL  SI D
Sbjct: 277  LENIEGVEKVLTVYFMSTEIPVWIWFFALGVSSDREVMNLIDYDSEDASISNILFASIRD 336

Query: 1190 ADKKFD----GFRKGGNAIKHIKELMQGCRYPPTESVEELISTYLFPHLTSRGQKASFLA 1357
            ADK  D    GFR+G NA+K++ E+++   +PP ES+EE IS YLFP+L    QKA FL 
Sbjct: 337  ADKLNDKVDGGFRRGKNALKYVDEVIRKTAFPPGESMEECISLYLFPNLKGLKQKARFLG 396

Query: 1358 YMVKCLLEAYRGRRKVDNRDDMRNKXXXXXXXXXXXXXXVHIKHAERRMVKAMQRDLYKD 1537
            YMVK LL+AY GRRK DNRDD RNK               HI HA RRM KA+QRDLY D
Sbjct: 397  YMVKSLLQAYAGRRKCDNRDDFRNKRLDLAGELLERELKAHIGHARRRMAKALQRDLYGD 456

Query: 1538 REVQSIDHYLDASIITNGLSRAFSTGAWVHPFKRMERIAGVVASLRRTNPLQAVCDLRRT 1717
            R V+ I+HYLDASI+TNG+SRAFSTGAW HPFKRMER++GVVA++ R NPLQ + D+R+T
Sbjct: 457  RAVRPIEHYLDASIVTNGISRAFSTGAWCHPFKRMERMSGVVATVGRANPLQTMVDMRKT 516

Query: 1718 RQQVSYTGRVGDARYPHPSHWGKVCFLSTPDGENCGLVKNLASLGIVSTNILEHANLLKK 1897
            RQQV YTG+VGDARYPHPSHWGKVCFLSTPDGENCGLVKNLA+ G+VSTN+LE  +L+ +
Sbjct: 517  RQQVQYTGKVGDARYPHPSHWGKVCFLSTPDGENCGLVKNLATTGLVSTNVLE--SLIPQ 574

Query: 1898 FHESGME-LVDDMSCLLDGKHRVFLDGDWVGVCKDSSSFVAKLRRRRRKLEVPYQIEIKR 2074
                GME LVDD    L GK +VFL+GDWVGVC+DS SFV +LRR RR+ ++P+Q+EIKR
Sbjct: 575  LLTCGMEKLVDDTFTSLRGKDKVFLNGDWVGVCEDSLSFVLELRRMRRRKKLPHQVEIKR 634

Query: 2075 DKHHGEVRIFADAGRILRPLFVVQNLKKIKDLKG-HFSFQSLLSSGIVEFIGPEEEEDCQ 2251
            D H GEVRIF+DAGRILRPL VV+NL K+K  KG   SFQ  L +GI+E IG EEEEDC 
Sbjct: 635  DVHQGEVRIFSDAGRILRPLLVVENLNKVKASKGGKSSFQYFLDNGIIELIGAEEEEDCS 694

Query: 2252 TAWGIDYLFTAELENPPVKYSHCEFDSSFLLGLSTGIIPFANHDHARRVLYQSAKHSQQA 2431
            TAWGI YLF  +      K++HCE D SFLLGLS GIIP+ANHDHARRVLYQ+ KHSQQA
Sbjct: 695  TAWGIKYLFMEDKGKSATKFTHCELDMSFLLGLSCGIIPYANHDHARRVLYQAQKHSQQA 754

Query: 2432 IGYSTTNPSIRVDTNSHQLYYPQRSLFRTMLSDCLGKSRYSDHHKGMVPRPDFFNGQCAI 2611
            IG+STTNP++RVDT SHQL+YPQR LF+TM SDCLGK      H  +VP+P+++NGQ AI
Sbjct: 755  IGFSTTNPNLRVDTLSHQLHYPQRPLFQTMTSDCLGKP---GRHNRIVPKPEYYNGQNAI 811

Query: 2612 VAVNVHLGYNQEDSLVMNRASLERGMFRTEHVRSYKAEVENSEGAGKRLKADEIVSFGKI 2791
            VAVNVHLG+NQEDS+VMNRASLERGMFR+EH+RSYKAEV+N E   KR K D+ V+FGK+
Sbjct: 812  VAVNVHLGFNQEDSIVMNRASLERGMFRSEHIRSYKAEVDNKESLDKRRKPDDCVNFGKM 871

Query: 2792 QSKIGRVDSLDDDGFPYIGANLQTGDIVIGKHAAAGVDHSIKLKHTERGMVQKVVLSAND 2971
            QSK GRVDSLDDDGFPY+GANLQ+GDI+IG+ + +G DHSIKLKHTERGMVQKV+LS+ND
Sbjct: 872  QSKFGRVDSLDDDGFPYVGANLQSGDIIIGRCSESGADHSIKLKHTERGMVQKVLLSSND 931

Query: 2972 EGKNFAVVSLRQVRAPCLGDKFSSMHGQKGVLGFLESQENFPFNKDGIVPDIVINPHAFP 3151
            +GKNFAVVSLRQVR+PCLGDKFSSMHGQKGVLGFLESQENFPF   G+VPDIVINPHAFP
Sbjct: 932  DGKNFAVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGVVPDIVINPHAFP 991

Query: 3152 SRQTPGQXXXXXXXXXXXXXXXXKYATPFSTPSVEDITAQLHRLGYSRWGGERVYDGRTG 3331
            SRQTPGQ                +YATPFST SV+DIT QLH  G+SRWG ERVY+G TG
Sbjct: 992  SRQTPGQLLEAALGKGIACGGSKRYATPFSTLSVDDITDQLHSAGFSRWGNERVYNGATG 1051

Query: 3332 EKVESLIFMGPTFYQRLTHMAEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCL 3511
              V SLIFMGPTFYQRL HM+EDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCL
Sbjct: 1052 AMVRSLIFMGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCL 1111

Query: 3512 IAHGAAANLHERLFTLSDSSQMHICRKCKKMANVIQRPVFGGRKIRGPYCRFCESVEDVV 3691
            IAHGA+ANLHERLFTLSDSSQMH+C+KCK +A VI R V GGRKIRGP+CR C+S +D+V
Sbjct: 1112 IAHGASANLHERLFTLSDSSQMHVCQKCKNVAYVILRTVAGGRKIRGPHCRICDSADDLV 1171

Query: 3692 RVNVPYGAKLLCQELFSMGISLSFDTELC 3778
            RVNVPYGAKLLCQELFSMGISL F+T  C
Sbjct: 1172 RVNVPYGAKLLCQELFSMGISLKFETRFC 1200


>ref|XP_004288915.1| PREDICTED: DNA-directed RNA polymerase D subunit 2a-like [Fragaria
            vesca subsp. vesca]
          Length = 1201

 Score = 1573 bits (4073), Expect = 0.0
 Identities = 775/1165 (66%), Positives = 919/1165 (78%), Gaps = 4/1165 (0%)
 Frame = +2

Query: 296  LQEVDKGFLKAFCKKASTAFFEQYGLISHQINSFNDFVDHGIQQLFDSIGEVVIEPGYDP 475
            L ++ + FL  FCK+AS +FF++YGL+SHQINS+NDFV++GIQ++FDS GE+V+EP +DP
Sbjct: 46   LHDLGEVFLDEFCKEASVSFFKEYGLLSHQINSYNDFVENGIQRVFDSFGEIVVEPNFDP 105

Query: 476  SKRGDGEWRRATLKFGKVTLEPPTFWTGEKFSSADGAKDYLDLLPRHAHLQNMTYSSRIK 655
            SK+G+ +WR A +KFGKVTL  P FW G     +D  K+Y ++LPRHA LQNMTYS+R+ 
Sbjct: 106  SKKGNADWRFAAIKFGKVTLSKPCFWGG-----SDSDKEY-NMLPRHARLQNMTYSARMS 159

Query: 656  VETHLQVYTEGLSRSDKFKTGVDTVVEKTILNEYHTEVNFGRLPVMVKSDLCWMSKHEER 835
            V   +QVYT+ L  SDKFKTG + ++EKT L+    ++  GR+PVMVKS+LCWM   E+ 
Sbjct: 160  VNITVQVYTQNLVESDKFKTGTEQLLEKTTLSTDSRDIIIGRIPVMVKSNLCWMKGVEKG 219

Query: 836  DCEFDQGGYFVIKGAEKTFIAQEQICLKRLWVAKEPTWSIAYRPVSKRKRVFIKM--VPK 1009
            DCEFDQGGYF+I GAEKTFIAQEQ CLKRL +      ++AYR   KR R+ I++  + K
Sbjct: 220  DCEFDQGGYFIINGAEKTFIAQEQSCLKRLLITNSQGLTVAYRSEVKRHRLIIRLSGISK 279

Query: 1010 VEHLVAGEKILTAYFYVAEIPVWLMFFALGVPNDREVVKLIGLDPEEDDIANILVPSIHD 1189
            +E++   EK+L+ YF   EIPVW+ FFALGV +D+EV+ LI    E+  I+NIL  SI D
Sbjct: 280  LENVEGVEKVLSVYFMSTEIPVWIWFFALGVSSDKEVIDLIDYGIEDASISNILFASIRD 339

Query: 1190 ADKKFDGFRKGGNAIKHIKELMQGCRYPPTESVEELISTYLFPHLTSRGQKASFLAYMVK 1369
            AD++ D FR+G NA+++++  ++   +PP ESVE+ IS YLFP++    QKA FL YMVK
Sbjct: 340  ADERKDDFRRGNNALRYVENAIKSTTFPPGESVEDCISMYLFPNMRGLKQKARFLGYMVK 399

Query: 1370 CLLEAYRGRRKVDNRDDMRNKXXXXXXXXXXXXXXVHIKHAERRMVKAMQRDLYKDREVQ 1549
            CLL+   G RK DNRDD RNK               H+ HA R+M KA+QRDL  D  V+
Sbjct: 400  CLLQTSIGLRKCDNRDDFRNKRLELAGELLERELKAHVSHARRKMAKALQRDLGGDHVVR 459

Query: 1550 SIDHYLDASIITNGLSRAFSTGAWVHPFKRMERIAGVVASLRRTNPLQAVCDLRRTRQQV 1729
             ++HYLDASI+TNG+SRAFSTGAW HPFKRMERI+GVVA++ R NPLQ + D+R+TRQQV
Sbjct: 460  PVEHYLDASIVTNGVSRAFSTGAWCHPFKRMERISGVVANIGRANPLQTMIDMRKTRQQV 519

Query: 1730 SYTGRVGDARYPHPSHWGKVCFLSTPDGENCGLVKNLASLGIVSTNILEHANLLKKFHES 1909
             YTG+ GDARYPHPSHWGKVCFLSTPDGENCGLVKNLA+  +VS NI E   +L K  + 
Sbjct: 520  QYTGKAGDARYPHPSHWGKVCFLSTPDGENCGLVKNLATTALVSINISEP--ILPKLFKC 577

Query: 1910 GME-LVDDMSCLLDGKHRVFLDGDWVGVCKDSSSFVAKLRRRRRKLEVPYQIEIKRDKHH 2086
            G+E LVDD    L GKH+VFL+GDWVG+C DS  FV KLRR RR  ++P+Q+EIKRD+H 
Sbjct: 578  GIEELVDDTYTSLAGKHKVFLNGDWVGICVDSHGFVTKLRRLRRSKKLPHQVEIKRDEHK 637

Query: 2087 GEVRIFADAGRILRPLFVVQNLKKIKDLKGH-FSFQSLLSSGIVEFIGPEEEEDCQTAWG 2263
            GEVRIF+DAGRILRPL VVQ LKKIK  KG   +FQ  L  GI+EFIG EEEEDC+TAW 
Sbjct: 638  GEVRIFSDAGRILRPLLVVQGLKKIKAAKGEKHTFQDFLDKGIIEFIGAEEEEDCRTAWA 697

Query: 2264 IDYLFTAELENPPVKYSHCEFDSSFLLGLSTGIIPFANHDHARRVLYQSAKHSQQAIGYS 2443
            I YLF  E +   VKY+HCE D SFLLGLS GIIPFANHDHARRVLYQS KHSQQAIGYS
Sbjct: 698  IKYLFMEE-QGSVVKYTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSQKHSQQAIGYS 756

Query: 2444 TTNPSIRVDTNSHQLYYPQRSLFRTMLSDCLGKSRYSDHHKGMVPRPDFFNGQCAIVAVN 2623
            TTNP++RVDT SH L+YPQR LFRTM++D LGK  Y   H G +P+P++FNGQ AIVAVN
Sbjct: 757  TTNPNLRVDTLSHNLHYPQRPLFRTMIADSLGKPGYPVGHNGFMPKPEYFNGQNAIVAVN 816

Query: 2624 VHLGYNQEDSLVMNRASLERGMFRTEHVRSYKAEVENSEGAGKRLKADEIVSFGKIQSKI 2803
            VHLGYNQEDS+VMNRASLERGMFR+EH+RSYKAEVEN     KR K DE V+FGKIQSK 
Sbjct: 817  VHLGYNQEDSIVMNRASLERGMFRSEHIRSYKAEVENKLSLEKRRKPDECVNFGKIQSKF 876

Query: 2804 GRVDSLDDDGFPYIGANLQTGDIVIGKHAAAGVDHSIKLKHTERGMVQKVVLSANDEGKN 2983
            GRVD+LDDDGFP +GA+LQ+GDI+IG+ + +G DHSIKLKHTERGMVQKVVLS+ND GKN
Sbjct: 877  GRVDNLDDDGFPCVGASLQSGDIIIGRCSESGTDHSIKLKHTERGMVQKVVLSSNDAGKN 936

Query: 2984 FAVVSLRQVRAPCLGDKFSSMHGQKGVLGFLESQENFPFNKDGIVPDIVINPHAFPSRQT 3163
            FAVVSLRQVR+P LGDKFSSMHGQKGVLGFLE QENFPF   GIVPDIVINPHAFPSRQT
Sbjct: 937  FAVVSLRQVRSPSLGDKFSSMHGQKGVLGFLEYQENFPFTIQGIVPDIVINPHAFPSRQT 996

Query: 3164 PGQXXXXXXXXXXXXXXXXKYATPFSTPSVEDITAQLHRLGYSRWGGERVYDGRTGEKVE 3343
            PGQ                +YATPFST SV+DIT QLHR G+SRWG ERVY+GRTGE V 
Sbjct: 997  PGQLLEAALGKGIACGGSKRYATPFSTLSVDDITDQLHRAGFSRWGNERVYNGRTGEMVR 1056

Query: 3344 SLIFMGPTFYQRLTHMAEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHG 3523
             LIFMGPTFYQRL HM+EDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHG
Sbjct: 1057 QLIFMGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHG 1116

Query: 3524 AAANLHERLFTLSDSSQMHICRKCKKMANVIQRPVFGGRKIRGPYCRFCESVEDVVRVNV 3703
            A+ANLHERLFTLSDSS M++C+KC+  ANVI+R + GGRKIRGPYCR C+S +D+VRVNV
Sbjct: 1117 ASANLHERLFTLSDSSLMNVCQKCQNAANVIERKLTGGRKIRGPYCRVCDSADDIVRVNV 1176

Query: 3704 PYGAKLLCQELFSMGISLSFDTELC 3778
            PYGAKLLCQELFSMGISL F+T LC
Sbjct: 1177 PYGAKLLCQELFSMGISLKFETRLC 1201


>ref|XP_004501385.1| PREDICTED: DNA-directed RNA polymerase D subunit 2a-like [Cicer
            arietinum]
          Length = 1199

 Score = 1572 bits (4071), Expect = 0.0
 Identities = 781/1167 (66%), Positives = 922/1167 (79%), Gaps = 5/1167 (0%)
 Frame = +2

Query: 293  VLQEVDKGFLKAFCKKASTAFFEQYGLISHQINSFNDFVDHGIQQLFDSIGEVVIEPGYD 472
            +L+E+    ++ FCKKAS  FF++YGLISHQINS+N F   G+Q  FDS G++ + PG+D
Sbjct: 43   ILKELGDDMVRYFCKKASIMFFDEYGLISHQINSYNQFATSGLQNTFDSFGDLTVTPGFD 102

Query: 473  PSKRGDGE-WRRATLKFGKVTLEPPTFWTGEKFSSADGAKDYLDLLPRHAHLQNMTYSSR 649
            PSK+GD E +R A++KFGKVTL+ P FW GE      G    + +LPRHA LQ MTY+S+
Sbjct: 103  PSKKGDNEHYRYASVKFGKVTLDRPMFWCGE------GNTQEMKMLPRHARLQRMTYASK 156

Query: 650  IKVETHLQVYTEGLSRSDKFKTGVDTVVEKTILNEYHTEVNFGRLPVMVKSDLCWMSKHE 829
            +KV   +QVY     RSDKFKTG +  +++ I+ + + E+  GRLPVMVKSDLCWM+  E
Sbjct: 157  MKVNVQVQVYIPKKVRSDKFKTGKEEYIDREIIMDENREITIGRLPVMVKSDLCWMNGVE 216

Query: 830  ERDCEFDQGGYFVIKGAEKTFIAQEQICLKRLWVAKEPTWSIAYRPVSKRKRVFIKMVPK 1009
            + DCEFD GGYF+IKGAEK FIAQEQI LKRLWV   P W++AY+   KR R+ +K+V  
Sbjct: 217  KGDCEFDHGGYFLIKGAEKIFIAQEQIFLKRLWVTNVPYWAVAYKSQMKRNRMVVKLVEN 276

Query: 1010 --VEHLVAGEKILTAYFYVAEIPVWLMFFALGVPNDREVVKLIGLDPEEDDIANILVPSI 1183
              VE +  GEK+LT YF   EIPVWL+FFALGV +D+++V LI     +  I NIL  SI
Sbjct: 277  TTVEGIKNGEKVLTVYFLSVEIPVWLLFFALGVTSDKQIVDLIDYGEGDGRIQNILFASI 336

Query: 1184 HDADKKFDGFRKGGNAIKHIKELMQGCRYPPTESVEELISTYLFPHLTSRGQKASFLAYM 1363
             +AD+K + FR+G NA+ +I+E ++G ++PP ES++E ++ Y+FP++    +KA +LAYM
Sbjct: 337  READEKCEQFRRGKNALLYIEERVKGVQFPPPESIDECLNMYVFPNIKGLNRKARYLAYM 396

Query: 1364 VKCLLEAYRGRRKVDNRDDMRNKXXXXXXXXXXXXXXVHIKHAERRMVKAMQRDLYKDRE 1543
            VK LL AY GRRK DNRDD RNK              VHI HA +RM KA+QRDLY DR+
Sbjct: 397  VKVLLLAYTGRRKTDNRDDFRNKRLELAGELLERELKVHIAHARKRMAKALQRDLYGDRD 456

Query: 1544 VQSIDHYLDASIITNGLSRAFSTGAWVHPFKRMERIAGVVASLRRTNPLQAVCDLRRTRQ 1723
            V  I+HYLDASIITNGL RAFSTGAW HP+KRMERI+GVVA+L RTNPLQ + +LRRTRQ
Sbjct: 457  VHQIEHYLDASIITNGLQRAFSTGAWTHPYKRMERISGVVATLGRTNPLQTMAELRRTRQ 516

Query: 1724 QVSYTGRVGDARYPHPSHWGKVCFLSTPDGENCGLVKNLASLGIVSTNILEHANLLKKFH 1903
            QV YTG+VGDARYPHPSHWGKVCFLSTPDGENCGLVKN+A  G+VSTN+ E  ++L +  
Sbjct: 517  QVQYTGKVGDARYPHPSHWGKVCFLSTPDGENCGLVKNMAVTGLVSTNVTE--SILPQLF 574

Query: 1904 ESGM-ELVDDMSCLLDGKHRVFLDGDWVGVCKDSSSFVAKLRRRRRKLEVPYQIEIKRDK 2080
              GM ELVDD + +L  K +VFL+GDWVGVC DS+SFVA+LR RRRK E+P+Q+EIKRD 
Sbjct: 575  ACGMEELVDDTTAVLGNKDKVFLNGDWVGVCSDSASFVAELRNRRRKNELPHQVEIKRDP 634

Query: 2081 HHGEVRIFADAGRILRPLFVVQNLKKIKDLKGH-FSFQSLLSSGIVEFIGPEEEEDCQTA 2257
               EVRI +DAGRILRPL VV NL KIK  K    SFQSLL +G++E IGPEEEEDC+TA
Sbjct: 635  SQEEVRILSDAGRILRPLLVVSNLLKIKGSKSDPKSFQSLLDNGLIELIGPEEEEDCKTA 694

Query: 2258 WGIDYLFTAELENPPVKYSHCEFDSSFLLGLSTGIIPFANHDHARRVLYQSAKHSQQAIG 2437
            WG+ YLF  E ++  VKY+HCE D SFLLGLS  ++PFANHDHARRVLYQS KHS QAIG
Sbjct: 695  WGVPYLFGKEGKS-SVKYTHCELDMSFLLGLSCSLVPFANHDHARRVLYQSQKHSSQAIG 753

Query: 2438 YSTTNPSIRVDTNSHQLYYPQRSLFRTMLSDCLGKSRYSDHHKGMVPRPDFFNGQCAIVA 2617
            +STTNP IRVD  SHQL+YPQ+ LF+TM SDCLGK  Y    K ++P+ +F+NGQ AIVA
Sbjct: 754  FSTTNPDIRVDALSHQLFYPQKPLFQTMTSDCLGKPGYLGPSK-LLPKSEFYNGQNAIVA 812

Query: 2618 VNVHLGYNQEDSLVMNRASLERGMFRTEHVRSYKAEVENSEGAGKRLKADEIVSFGKIQS 2797
            VNVHLGYNQEDSLVMNRASL+RGMFR+EH+RSYKAE EN E   K+ K ++IV+FGKIQS
Sbjct: 813  VNVHLGYNQEDSLVMNRASLQRGMFRSEHIRSYKAENENKESTEKKRKPEDIVNFGKIQS 872

Query: 2798 KIGRVDSLDDDGFPYIGANLQTGDIVIGKHAAAGVDHSIKLKHTERGMVQKVVLSANDEG 2977
            KIGRVDSLDDDGFP++GANLQ GDI+IG+ A +G DHSIKLKHTERG VQKVVLS+NDEG
Sbjct: 873  KIGRVDSLDDDGFPFVGANLQIGDIIIGRCADSGADHSIKLKHTERGYVQKVVLSSNDEG 932

Query: 2978 KNFAVVSLRQVRAPCLGDKFSSMHGQKGVLGFLESQENFPFNKDGIVPDIVINPHAFPSR 3157
            KNFAVVSLRQVR+P LGDKFSSMHGQKGVLGFLESQENFPF K GIVPDIVINPHAFPSR
Sbjct: 933  KNFAVVSLRQVRSPVLGDKFSSMHGQKGVLGFLESQENFPFTKQGIVPDIVINPHAFPSR 992

Query: 3158 QTPGQXXXXXXXXXXXXXXXXKYATPFSTPSVEDITAQLHRLGYSRWGGERVYDGRTGEK 3337
            QTPGQ                + ATPFST SVE IT QLHR G+SRWG ERVY+GRTGE 
Sbjct: 993  QTPGQLLEAALGKGIACVGSLRNATPFSTSSVEAITDQLHRAGFSRWGNERVYNGRTGEM 1052

Query: 3338 VESLIFMGPTFYQRLTHMAEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIA 3517
            V SLIFMGPTFYQRL HM+EDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIA
Sbjct: 1053 VRSLIFMGPTFYQRLHHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIA 1112

Query: 3518 HGAAANLHERLFTLSDSSQMHICRKCKKMANVIQRPVFGGRKIRGPYCRFCESVEDVVRV 3697
            HGA+ANL+ERLFTLSDSSQ+HIC KCK +ANVI RPV GGRKIRGPYCRFCES +D+V  
Sbjct: 1113 HGASANLYERLFTLSDSSQIHICSKCKNVANVILRPVSGGRKIRGPYCRFCESADDIVVA 1172

Query: 3698 NVPYGAKLLCQELFSMGISLSFDTELC 3778
            +VPYGAKLLCQELFSMGI+L F+TELC
Sbjct: 1173 HVPYGAKLLCQELFSMGINLKFETELC 1199


>gb|AAY68206.1| RNA polymerase IV second largest subunit [Solanum lycopersicum]
          Length = 1123

 Score = 1570 bits (4066), Expect = 0.0
 Identities = 776/1129 (68%), Positives = 906/1129 (80%), Gaps = 15/1129 (1%)
 Frame = +2

Query: 170  LEEAGPSSSSIRDKFSKGSTRMXXXXXXXXXXXXXXXXAD-----------CVLQEVDKG 316
            +EE G SS   ++K S GSTRM                 D            +++E+ + 
Sbjct: 1    MEEVGCSSG--KEKISNGSTRMDFDIDDLFEVDDDDWDEDEDEDEDDSHDMVLIKELGES 58

Query: 317  FLKAFCKKASTAFFEQYGLISHQINSFNDFVDHGIQQLFDSIGEVVIEPGYDPSKRGDGE 496
            FLK FCKKAST FFE+YG ISHQINS+NDF+++GIQ++FDS+GE+ +EPGYDPSKRGDG+
Sbjct: 59   FLKNFCKKASTGFFEKYGSISHQINSYNDFINYGIQRVFDSVGEIHVEPGYDPSKRGDGD 118

Query: 497  WRRATLKFGKVTLEPPTFWTGEKFSSADGAKDYLDLLPRHAHLQNMTYSSRIKVETHLQV 676
            W+ A++KFGKVTLE P FW GEKFS   G K+YLDLLPRHA LQNMTYS+RI VETH+QV
Sbjct: 119  WKHASVKFGKVTLERPKFWAGEKFS-VGGGKEYLDLLPRHARLQNMTYSARIMVETHVQV 177

Query: 677  YTEGLSRSDKFKTGVDTVVEKTILNEYHTEVNFGRLPVMVKSDLCWMSKHEERDCEFDQG 856
            YT+ L RSDKFKTGVD  V+K    E   +V  GR+PVMV S+LCWM+  ++ DCEFD G
Sbjct: 178  YTKKLVRSDKFKTGVDRFVDKEWEVEGKRDVLIGRIPVMVNSELCWMNGVDKLDCEFDHG 237

Query: 857  GYFVIKGAEKTFIAQEQICLKRLWVAKEPTWSIAYRPVSKRKRVFIKMVP--KVEHLVAG 1030
            GYF+ KGAEKTFIAQEQ+CLKRLWV+  PTW + YRP  KRKRV+IK+    K+EH+  G
Sbjct: 238  GYFIAKGAEKTFIAQEQLCLKRLWVSNNPTWMVGYRPGEKRKRVYIKLTETLKLEHIKGG 297

Query: 1031 EKILTAYFYVAEIPVWLMFFALGVPNDREVVKLIGLDPEEDDIANILVPSIHDADKKFDG 1210
            EK L+ Y  +AE+P+W++FFALGV +DREVV LI +D E+  I NILV SIH+ADK  + 
Sbjct: 298  EKALSVYI-LAEMPIWVLFFALGVSSDREVVNLIDVDIEDTTIVNILVASIHEADKNCED 356

Query: 1211 FRKGGNAIKHIKELMQGCRYPPTESVEELISTYLFPHLTSRGQKASFLAYMVKCLLEAYR 1390
            FRKG  A+ ++  L++ C++PP ESVEE I+ YLFP+L+   QKA FL YMVKCLL ++ 
Sbjct: 357  FRKGKKALAYVDRLIKNCKFPPQESVEECINAYLFPNLSGFKQKARFLGYMVKCLLHSFI 416

Query: 1391 GRRKVDNRDDMRNKXXXXXXXXXXXXXXVHIKHAERRMVKAMQRDLYKDREVQSIDHYLD 1570
            GRRKVDNRDD RNK               HIKHAERRMVKAMQRDLY DR+VQ I+HYLD
Sbjct: 417  GRRKVDNRDDFRNKRLELAGELLERELRAHIKHAERRMVKAMQRDLYGDRQVQPIEHYLD 476

Query: 1571 ASIITNGLSRAFSTGAWVHPFKRMERIAGVVASLRRTNPLQAVCDLRRTRQQVSYTGRVG 1750
            ASIITNGLSRAFSTG W HP+KRMER++GVVA+LRRTNPLQ   D+R++RQQV+YTG+VG
Sbjct: 477  ASIITNGLSRAFSTGHWCHPYKRMERVSGVVATLRRTNPLQMTADMRKSRQQVTYTGKVG 536

Query: 1751 DARYPHPSHWGKVCFLSTPDGENCGLVKNLASLGIVSTNILEHANLLKKFHESGME-LVD 1927
            DARYPHPSHWGK+CFLSTPDGENCGLVKNLAS+G+VST IL+    L+     GM+ LVD
Sbjct: 537  DARYPHPSHWGKLCFLSTPDGENCGLVKNLASMGLVSTIILKP--FLETLFRCGMQKLVD 594

Query: 1928 DMSCLLDGKHRVFLDGDWVGVCKDSSSFVAKLRRRRRKLEVPYQIEIKRDKHHGEVRIFA 2107
            D S  L GK +V LDG+WVGVC+DS+ FV+KLRR+RR+ EVP+Q+E+KRD+  GEVRIF+
Sbjct: 595  DCSTSLHGKQKVLLDGEWVGVCEDSALFVSKLRRKRRRNEVPHQVEVKRDELQGEVRIFS 654

Query: 2108 DAGRILRPLFVVQNLKKIKDLKG-HFSFQSLLSSGIVEFIGPEEEEDCQTAWGIDYLFTA 2284
            D GRILRPL VV NLKKIK LKG  + FQSLL +GI+E IGPEEEEDC+TAWG++Y+  A
Sbjct: 655  DPGRILRPLLVVSNLKKIKALKGGDYGFQSLLDNGIIELIGPEEEEDCRTAWGVEYILKA 714

Query: 2285 ELENPPVKYSHCEFDSSFLLGLSTGIIPFANHDHARRVLYQSAKHSQQAIGYSTTNPSIR 2464
            + ENPP KY+HCE D SFLLGLS GIIPFANHDHARRVLYQS KHSQQAIG+ST NP+ R
Sbjct: 715  DKENPPAKYTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSEKHSQQAIGFSTVNPNNR 774

Query: 2465 VDTNSHQLYYPQRSLFRTMLSDCLGKSRYSDHHKGMVPRPDFFNGQCAIVAVNVHLGYNQ 2644
            VDTN+HQLYYPQR LFRTML+D LGK + + + KGM+PRP++FNGQCAIVAVNVHLGYNQ
Sbjct: 775  VDTNTHQLYYPQRPLFRTMLADSLGKPKCAQYQKGMLPRPEYFNGQCAIVAVNVHLGYNQ 834

Query: 2645 EDSLVMNRASLERGMFRTEHVRSYKAEVENSEGAGKRLKADEIVSFGKIQSKIGRVDSLD 2824
            EDSLVMNRASLERGMFR+EHVRSYKAEV+N E   K+LK ++ V+FGK QSKIGRVDSLD
Sbjct: 835  EDSLVMNRASLERGMFRSEHVRSYKAEVDNKEAMAKKLKIEDSVNFGKTQSKIGRVDSLD 894

Query: 2825 DDGFPYIGANLQTGDIVIGKHAAAGVDHSIKLKHTERGMVQKVVLSANDEGKNFAVVSLR 3004
            DDGFP+IGANLQ+GDI+IGK + +G DHS+KLKHTERGMVQKV+LSANDEGKNFAVVSLR
Sbjct: 895  DDGFPFIGANLQSGDIIIGKFSESGADHSVKLKHTERGMVQKVLLSANDEGKNFAVVSLR 954

Query: 3005 QVRAPCLGDKFSSMHGQKGVLGFLESQENFPFNKDGIVPDIVINPHAFPSRQTPGQXXXX 3184
            QVR+PCLGDKFSSMHGQKGVLGFLESQENFPF   GIVPDIVINPHAFPSRQTPGQ    
Sbjct: 955  QVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEA 1014

Query: 3185 XXXXXXXXXXXXKYATPFSTPSVEDITAQLHRLGYSRWGGERVYDGRTGEKVESLIFMGP 3364
                        KYATPFST SV+ I  QL   G++RWG ERVY+GRTGE V SLIFMGP
Sbjct: 1015 ALGKGIALGGGQKYATPFSTLSVDAIMEQLQGRGFTRWGNERVYNGRTGEMVHSLIFMGP 1074

Query: 3365 TFYQRLTHMAEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCL 3511
            TFYQRL HMAEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCL
Sbjct: 1075 TFYQRLIHMAEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCL 1123


>ref|XP_004145500.1| PREDICTED: DNA-directed RNA polymerase D subunit 2a-like [Cucumis
            sativus]
          Length = 1197

 Score = 1566 bits (4054), Expect = 0.0
 Identities = 771/1169 (65%), Positives = 917/1169 (78%), Gaps = 8/1169 (0%)
 Frame = +2

Query: 296  LQEVDKGFLKAFCKKASTAFFEQYGLISHQINSFNDFVDHGIQQLFDSIGEVVIEPGYDP 475
            + ++ + FLK FCKK+S AFF QYGLISHQINS+NDF+ +GIQ+ FD  G+++++PGYDP
Sbjct: 40   IHDLGEAFLKDFCKKSSMAFFNQYGLISHQINSYNDFIKNGIQKAFDFFGDILVQPGYDP 99

Query: 476  SKRGDGEWRRATLKFGKVTLEPPTFWTGEKFSSADGAKDYLDLLPRHAHLQNMTYSSRIK 655
            SK+GDGEWR AT+KFGKVTL+ P FW G     A   K+Y ++LPRHA LQNMTYSSR+K
Sbjct: 100  SKKGDGEWRYATVKFGKVTLDKPKFWGG-----AASGKEY-NMLPRHARLQNMTYSSRMK 153

Query: 656  VETHLQVYTEGLSRSDKFKTGVDTVVEKTILN--EYHTEVNFGRLPVMVKSDLCWMSKHE 829
            +   L++YT+ L  SDKFKTG D  V+K  +     + +V  GRLPVMV SDLCWM   +
Sbjct: 154  INISLEIYTQKLVSSDKFKTGKDQYVDKEPVEGASDNRDVFIGRLPVMVNSDLCWMKDGQ 213

Query: 830  ERDCEFDQGGYFVIKGAEKTFIAQEQICLKRLWVAKEPTWSIAYRPVSKRKRVFIKMVP- 1006
            +RDCEFD+GGYF+IKGAEK FIAQEQICL+RLW++    W++AYR   KR R+ I++V  
Sbjct: 214  KRDCEFDRGGYFLIKGAEKIFIAQEQICLRRLWISNVQGWTVAYRSEVKRNRLIIRLVEN 273

Query: 1007 -KVEHLVAGEKILTAYFYVAEIPVWLMFFALGVPNDREVVKLIGLDPEEDDIANILVPSI 1183
             K E L + EK+L  YF   E+PVW++FFALGV +D+E+V LI    ++  + NIL  S+
Sbjct: 274  SKSEDLKSKEKVLNVYFLSTEVPVWILFFALGVSSDKEIVDLIDYGRDDPTVLNILFASV 333

Query: 1184 H--DADKKFDGFRKGGNAIKHIKELMQGCRYPPTESVEELISTYLFPHLTSRGQKASFLA 1357
               D D K+  FR+G  A+  +   ++   +PP + +E+ ++ YLF  L    QK  FL 
Sbjct: 334  REVDNDDKWKDFRRGKRALTFLDNEIRKTSFPPADKIEDCLNLYLFASLKGSKQKCHFLG 393

Query: 1358 YMVKCLLEAYRGRRKVDNRDDMRNKXXXXXXXXXXXXXXVHIKHAERRMVKAMQRDLYKD 1537
            YMVKCLL+AY GRRK DNRDD RNK              VHI HA RRM KA+QRDLY D
Sbjct: 394  YMVKCLLQAYTGRRKCDNRDDFRNKRFELAAELLERELKVHIAHARRRMEKALQRDLYGD 453

Query: 1538 REVQSIDHYLDASIITNGLSRAFSTGAWVHPFKRMERIAGVVASLRRTNPLQAVCDLRRT 1717
            R+V  I+HYLDASIITNGLSRAFSTGAW H FKRMERI+GVVA+L R NPLQ + +LRRT
Sbjct: 454  RQVHPIEHYLDASIITNGLSRAFSTGAWAHAFKRMERISGVVATLGRANPLQTMAELRRT 513

Query: 1718 RQQVSYTGRVGDARYPHPSHWGKVCFLSTPDGENCGLVKNLASLGIVSTNILEHANLLKK 1897
            RQQV+YTG+VGDARYPHPSHWG+VCFLSTPDGENCGL+KNL+  G+VS N  +  ++   
Sbjct: 514  RQQVAYTGKVGDARYPHPSHWGRVCFLSTPDGENCGLIKNLSGTGLVSLNTKK--SITPT 571

Query: 1898 FHESGME-LVDDMSCLLDGKHRVFLDGDWVGVCKDSSSFVAKLRRRRRKLEVPYQIEIKR 2074
                GME LVD+ S    GK+R+FLDG+WVGVC+DS SFV  +RR+RR+    +Q+E+KR
Sbjct: 572  LFRCGMENLVDNTSTSFCGKYRIFLDGEWVGVCEDSLSFVTNVRRKRRRNPFLHQVEVKR 631

Query: 2075 DKHHGEVRIFADAGRILRPLFVVQNLKKIKDLKG-HFSFQSLLSSGIVEFIGPEEEEDCQ 2251
            D+   EVRIF+DAGRILRPL VV+NL +I   KG +++FQSLL  GI+E IG EEEEDC+
Sbjct: 632  DEQLKEVRIFSDAGRILRPLLVVENLNRIDKSKGENYTFQSLLDKGIIELIGTEEEEDCR 691

Query: 2252 TAWGIDYLFTAELENPPVKYSHCEFDSSFLLGLSTGIIPFANHDHARRVLYQSAKHSQQA 2431
             AW I +L   E      KYSHCE D SFLLGLS G++PFANHDHARR L+QS KHS QA
Sbjct: 692  VAWSIKHLMEDE---GTTKYSHCELDMSFLLGLSCGLVPFANHDHARRALFQSQKHSNQA 748

Query: 2432 IGYSTTNPSIRVDTNSHQLYYPQRSLFRTMLSDCLGKSRYSDHHKGMVPRPDFFNGQCAI 2611
            IG+S TN + RVDT SHQL+YPQR LFRTM +DCLG   Y   H G++P+P+F+NGQ AI
Sbjct: 749  IGFSPTNSNFRVDTLSHQLHYPQRPLFRTMTADCLGTPGYLSSHAGILPKPEFYNGQNAI 808

Query: 2612 VAVNVHLGYNQEDSLVMNRASLERGMFRTEHVRSYKAEVENSEGAGKRLKADEIVSFGKI 2791
            VAVNVHLGYNQEDSLVMNRASLERGMFR+EH+RSYKAEV+N E + KR K+D+ ++FGK 
Sbjct: 809  VAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKESSEKRRKSDDAINFGKT 868

Query: 2792 QSKIGRVDSLDDDGFPYIGANLQTGDIVIGKHAAAGVDHSIKLKHTERGMVQKVVLSAND 2971
            QSKIGRVDSLDDDGFPYIGANLQ+GDIVIG+ A +G DHSIKLKHTE+GMVQKVVLS+ND
Sbjct: 869  QSKIGRVDSLDDDGFPYIGANLQSGDIVIGRCAESGADHSIKLKHTEKGMVQKVVLSSND 928

Query: 2972 EGKNFAVVSLRQVRAPCLGDKFSSMHGQKGVLGFLESQENFPFNKDGIVPDIVINPHAFP 3151
            +GKN+AVVSLRQVR+PCLGDKFSSMHGQKGVLGFLESQENFPF   GIVPDIVINPHAFP
Sbjct: 929  DGKNYAVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFP 988

Query: 3152 SRQTPGQXXXXXXXXXXXXXXXXKYATPFSTPSVEDITAQLHRLGYSRWGGERVYDGRTG 3331
            SRQTPGQ                KYATPFSTPSV+ IT QLHR G+SRWG ERVY+GRTG
Sbjct: 989  SRQTPGQLLEAALGKGIAAGGSLKYATPFSTPSVDAITDQLHRAGFSRWGSERVYNGRTG 1048

Query: 3332 EKVESLIFMGPTFYQRLTHMAEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCL 3511
            E + SLIFMGPTFYQRL HMAEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCL
Sbjct: 1049 EMMRSLIFMGPTFYQRLIHMAEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCL 1108

Query: 3512 IAHGAAANLHERLFTLSDSSQMHICRKCKKMANVIQRPVFGGRKIRGPYCRFCESVEDVV 3691
            IAHGA+ANLHERLFTLSDSSQMH+C+KCK +A+VIQR V GGRK+RGPYCR CES +D+V
Sbjct: 1109 IAHGASANLHERLFTLSDSSQMHVCQKCKNVASVIQRSVAGGRKMRGPYCRVCESFDDIV 1168

Query: 3692 RVNVPYGAKLLCQELFSMGISLSFDTELC 3778
            RVNVPYGAKLLCQELFSMGI+L F+T+LC
Sbjct: 1169 RVNVPYGAKLLCQELFSMGINLKFETQLC 1197


>ref|XP_003523670.1| PREDICTED: DNA-directed RNA polymerases IV and V subunit 2-like
            [Glycine max]
          Length = 1205

 Score = 1551 bits (4015), Expect = 0.0
 Identities = 765/1168 (65%), Positives = 922/1168 (78%), Gaps = 6/1168 (0%)
 Frame = +2

Query: 293  VLQEVDKGFLKAFCKKASTAFFEQYGLISHQINSFNDFVDHGIQQLFDSIGEVVIEPGYD 472
            +L+E+ +  +K +CKKAS  FF++YGLISHQINSFN FV  G+Q  FDS G++V+ PG+D
Sbjct: 45   ILEELGEDMVKYWCKKASMLFFDEYGLISHQINSFNHFVAIGLQNTFDSFGDLVVTPGFD 104

Query: 473  PSKRGDGE-WRRATLKFGKVTLEPPTFWTGEKFSSADGAKDYLDLLPRHAHLQNMTYSSR 649
            PSK+G+ E +R A++KFGKV L+ P FW GE      G      +LPRHA +Q MTY+S+
Sbjct: 105  PSKKGENEHFRYASVKFGKVKLDKPMFWGGE------GNAQEFKMLPRHARIQRMTYASK 158

Query: 650  IKVETHLQVYTEGLSRSDKFKTGVDTVVEKTILNEYHTEVNFGRLPVMVKSDLCWMSKHE 829
            +K++  +QVY     RSDKFKTG +  +++ I+ E   E+  GRLPVMVKSDLCWM   E
Sbjct: 159  VKIQVKVQVYVPKKVRSDKFKTGKEEFLDREIMKEDEREIIIGRLPVMVKSDLCWMKDAE 218

Query: 830  ERDCEFDQGGYFVIKGAEKTFIAQEQICLKRLWVAKEPTWSIAYRPVSKRKRVFIKMV-- 1003
            + D EFD GGYF++KGAEKTFIAQEQ+ LKRLWV   P W IAY+   KR R+ IK+V  
Sbjct: 219  KDDDEFDHGGYFIVKGAEKTFIAQEQLYLKRLWVMNSPGWMIAYKSQMKRNRMVIKLVGN 278

Query: 1004 PKVEHLVAGEKILTAYFYVAEIPVWLMFFALGVPNDREVVKLIGLDPEEDDIANILVPSI 1183
             + E +  G+  LT YF   E+PVW++FFALGV +D+E+V LIG   ++  I NIL  S+
Sbjct: 279  SRSEEVENGDMCLTVYFLSVEVPVWVLFFALGVSSDKEIVDLIGCGNDDVRIQNILFASV 338

Query: 1184 HDADKKFDGFRKGGNAIKHIKELMQGCRYPPTESVEELISTYLFPHLTSRGQKASFLAYM 1363
             DAD+K   FR+  NA++++++ ++  ++PP+ES++E +  Y+FP ++   +KA FLAYM
Sbjct: 339  RDADEKCGAFRRVRNAVQYLEKCVKSVQFPPSESMQECLEMYVFPGISGLNRKARFLAYM 398

Query: 1364 VKCLLEAYRGRRKVDNRDDMRNKXXXXXXXXXXXXXXVHIKHAERRMVKAMQRDLYKDRE 1543
            VK LL AY GRRK DNRDD RNK              VH+ HA +RM KA+QRDLY DR+
Sbjct: 399  VKGLLLAYTGRRKCDNRDDFRNKRLELASELLDRELKVHVAHARKRMAKALQRDLYGDRD 458

Query: 1544 VQSIDHYLDASIITNGLSRAFSTGAWVHPFKRMERIAGVVASLRRTNPLQAVCDLRRTRQ 1723
            V+ I+HYLDASIITNGL RAFSTGAW HP+KRMERI+GVVA++ RTNPLQ + +LRR RQ
Sbjct: 459  VRPIEHYLDASIITNGLQRAFSTGAWSHPYKRMERISGVVANVGRTNPLQTMAELRRARQ 518

Query: 1724 QVSYTGRVGDARYPHPSHWGKVCFLSTPDGENCGLVKNLASLGIVSTNILEHA-NLLKKF 1900
            QV YTG+VGDARYPHPSHWGKVCFL+TPDGENCGLVKNL+  G+VST++ +   ++L K 
Sbjct: 519  QVQYTGKVGDARYPHPSHWGKVCFLTTPDGENCGLVKNLSVTGLVSTDVTDVTESILLKL 578

Query: 1901 HESGM-ELVDDMSCLLDGKHRVFLDGDWVGVCKDSSSFVAKLRRRRRKLEVPYQIEIKRD 2077
             + GM ELVDD S  L    +V L+GDWVGVC DSSSFVA+LR RRR+ E+P+Q+EIKRD
Sbjct: 579  VDCGMQELVDDTSTHLGSMDKVLLNGDWVGVCPDSSSFVAELRSRRRRNELPHQVEIKRD 638

Query: 2078 KHHGEVRIFADAGRILRPLFVVQNLKKIKDLKG-HFSFQSLLSSGIVEFIGPEEEEDCQT 2254
            +   EVRI++DAGRILRPL VV NL KIK  K   +SFQSLL  G++E IGPEEEEDC T
Sbjct: 639  QSQHEVRIYSDAGRILRPLLVVGNLLKIKGFKSDRYSFQSLLDKGVIELIGPEEEEDCCT 698

Query: 2255 AWGIDYLFTAELENPPVKYSHCEFDSSFLLGLSTGIIPFANHDHARRVLYQSAKHSQQAI 2434
            AWG++YLF  E +   VKY+HCE D SFLLGLS  ++PFANHDHARRVLYQS KHS QAI
Sbjct: 699  AWGVEYLFGKEGKRS-VKYTHCELDMSFLLGLSCSLVPFANHDHARRVLYQSQKHSSQAI 757

Query: 2435 GYSTTNPSIRVDTNSHQLYYPQRSLFRTMLSDCLGKSRYSDHHKGMVPRPDFFNGQCAIV 2614
            G+STTNP+IRVDT SHQL+YPQ+ LFRTM SDCLGK  +S     + P+ +F+NGQ AIV
Sbjct: 758  GFSTTNPNIRVDTLSHQLHYPQKPLFRTMTSDCLGKPDHSLGQSKIPPKAEFYNGQNAIV 817

Query: 2615 AVNVHLGYNQEDSLVMNRASLERGMFRTEHVRSYKAEVENSEGAGKRLKADEIVSFGKIQ 2794
            AVNVHLGYNQEDSLVMNRASL+RGMFR+EH+RSYK+E++N E + K+ K ++IV+F K+Q
Sbjct: 818  AVNVHLGYNQEDSLVMNRASLQRGMFRSEHIRSYKSEIDNKESSDKKRKPEDIVNFAKLQ 877

Query: 2795 SKIGRVDSLDDDGFPYIGANLQTGDIVIGKHAAAGVDHSIKLKHTERGMVQKVVLSANDE 2974
            SKIGRVDSLDDDGFPY+GANLQ+GDI+IGK A +G D+S+KLKHTERG VQKVVLS+NDE
Sbjct: 878  SKIGRVDSLDDDGFPYVGANLQSGDIIIGKCAESGADNSVKLKHTERGYVQKVVLSSNDE 937

Query: 2975 GKNFAVVSLRQVRAPCLGDKFSSMHGQKGVLGFLESQENFPFNKDGIVPDIVINPHAFPS 3154
            GKNFAVVSLRQVR+P LGDKFSSMHGQKGVLGFLESQENFPF + GIVPDIVINPHAFPS
Sbjct: 938  GKNFAVVSLRQVRSPVLGDKFSSMHGQKGVLGFLESQENFPFTRQGIVPDIVINPHAFPS 997

Query: 3155 RQTPGQXXXXXXXXXXXXXXXXKYATPFSTPSVEDITAQLHRLGYSRWGGERVYDGRTGE 3334
            RQTPGQ                K ATPFSTPSV+ IT QLHR G+SRWG ERVY+GRTGE
Sbjct: 998  RQTPGQLLEAALGKGIACGGILKQATPFSTPSVDAITEQLHRAGFSRWGNERVYNGRTGE 1057

Query: 3335 KVESLIFMGPTFYQRLTHMAEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLI 3514
             V SLIFMGPTFYQRL HM+EDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLI
Sbjct: 1058 MVRSLIFMGPTFYQRLHHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLI 1117

Query: 3515 AHGAAANLHERLFTLSDSSQMHICRKCKKMANVIQRPVFGGRKIRGPYCRFCESVEDVVR 3694
            AHGA+ANL+ERLFTLSDSSQ+HIC KCKK+ANVI RPV GGRKIRGPYCR CES +D+V 
Sbjct: 1118 AHGASANLYERLFTLSDSSQIHICSKCKKVANVILRPVSGGRKIRGPYCRHCESADDIVV 1177

Query: 3695 VNVPYGAKLLCQELFSMGISLSFDTELC 3778
             +VPYGAKLLCQELFSMGI+L F+T+LC
Sbjct: 1178 AHVPYGAKLLCQELFSMGINLKFETQLC 1205


>gb|EXB86677.1| DNA-directed RNA polymerase D subunit 2a [Morus notabilis]
          Length = 1196

 Score = 1546 bits (4004), Expect = 0.0
 Identities = 755/1166 (64%), Positives = 916/1166 (78%), Gaps = 5/1166 (0%)
 Frame = +2

Query: 296  LQEVDKGFLKAFCKKASTAFFEQYGLISHQINSFNDFVDHGIQQLFDSIGEVVIEPGYDP 475
            ++E+ + FL+ FCK+AST+FF +YGLISHQINS+NDF+ +G+Q++FDS G++++EPGYDP
Sbjct: 40   IKELGEVFLQNFCKEASTSFFSEYGLISHQINSYNDFIRNGVQKVFDSFGDLIVEPGYDP 99

Query: 476  SKRGDGEWRRATLKFGKVTLEPPTFWTGEKFSSADGAKDYLDLLPRHAHLQNMTYSSRIK 655
            SK+   EWR A ++FGKVTL+ P+FW G     AD  K+Y +LLPRHA LQNMTYSSR+K
Sbjct: 100  SKKRQNEWRYALVRFGKVTLDLPSFWGG-----ADKDKEY-NLLPRHARLQNMTYSSRMK 153

Query: 656  VETHLQVYTEGLSRSDKFKTGVDTVVEKTILNEYHTEVNFGRLPVMVKSDLCWMSKHEER 835
            V  H++VYT+ L RSDKFKTG +  ++K I++    +V  GR+PVMVKSDLCWM   E+ 
Sbjct: 154  VNVHIEVYTQKLVRSDKFKTGKEQFLDKEIISTEDKDVMIGRIPVMVKSDLCWMKDAEKG 213

Query: 836  DCEFDQGGYFVIKGAEKTFIAQEQICLKRLWVAKEPTWSIAYRPVSKRKRVFIKMVPK-V 1012
            DC FD GGYF+IKGAEKTFIAQEQIC KRLW+      ++AY+   KR R+ +++    +
Sbjct: 214  DCYFDHGGYFIIKGAEKTFIAQEQICRKRLWITSHQNLTVAYQSEVKRNRLILRLAQSGL 273

Query: 1013 EHLVAGEKILTAYFYVAEIPVWLMFFALGVPNDREVVKLIGLDPEEDDIANILVPSIHDA 1192
            E     + +L  YF   EIPVW++FFALGV +D+EVV LI    ++  I NIL PSI  +
Sbjct: 274  EDTTVEKDVLCVYFLSTEIPVWILFFALGVSSDKEVVDLIDFPTDDASILNILFPSIQIS 333

Query: 1193 DKKFDGFRKGGNAIKHIKELMQGCRYPPTESVEELISTYLFPHLTSRGQKASFLAYMVKC 1372
            D+   GFR+   A+  +++ ++  ++PP ES EE +  +LFP+L    QKA FL YMVKC
Sbjct: 334  DEVCAGFRRQKKALGFVEKHIKKTQFPPRESAEECLDMFLFPNLRGMLQKARFLGYMVKC 393

Query: 1373 LLEAYRGRRKVDNRDDMRNKXXXXXXXXXXXXXXVHIKHAERRMVKAMQRDLYKDREVQS 1552
            LL+A+ GRRK +N+DD RNK                + HA +R  KA+QRDLY D+ ++ 
Sbjct: 394  LLQAFTGRRKCNNKDDFRNKRLDLAGELLERELRAQVSHARKRTAKALQRDLYGDKGLRQ 453

Query: 1553 IDHYLDASIITNGLSRAFSTGAWVHPFKRMERIAGVVASLRRTNPLQAVCDLRRTRQQVS 1732
            I+ YLDASI+TNGLSRAFSTGAW HPFK+ ERI+GVVA++ RTNPLQ V D+R+TRQQV 
Sbjct: 454  IEFYLDASIVTNGLSRAFSTGAWCHPFKKTERISGVVANVGRTNPLQTVVDMRKTRQQVQ 513

Query: 1733 YTGRVGDARYPHPSHWGKVCFLSTPDGENCGLVKNLASLGIVSTNILEHANLLKKFHESG 1912
            YTG+VGDARYPHPSHWGKVCFLSTPDGENCGLVKNLA+ G+VS NI E  +L+    +SG
Sbjct: 514  YTGKVGDARYPHPSHWGKVCFLSTPDGENCGLVKNLAATGLVSINIAE--SLISTLCDSG 571

Query: 1913 ME-LVDDMSCLLDGKHRVFLDGDWVGVCKDSSSFVAKLRRRRRKLEVPYQIEIKRDKHHG 2089
            ME L +D    L  KH+VFL+GDW+GVC DS +FV +LRR+RR+ E+P+Q+EIKRD+ HG
Sbjct: 572  MENLANDTYTPLHEKHKVFLNGDWIGVCADSLAFVTELRRKRRRNELPHQVEIKRDEQHG 631

Query: 2090 EVRIFADAGRILRPLFVVQNLKKIKDLK-GHFSFQSLLSSGIVEFIGPEEEEDCQTAWGI 2266
            EVRIF+D+GRILRPL VV+NL +IK  K G ++F SLL  GI+E IG EEEEDC+TAWGI
Sbjct: 632  EVRIFSDSGRILRPLLVVENLNRIKPSKEGKYTFHSLLDKGIIELIGAEEEEDCRTAWGI 691

Query: 2267 DYLFTAELENPPVKYSHCEFDSSFLLGLSTGIIPFANHDHARRVLYQSAKHSQQAIGYST 2446
             YLF  +    PV Y+HCE D SFLL +S GIIPFANHDHARRVLYQ+ KHSQQAIG+ T
Sbjct: 692  KYLFMED-GGKPVNYTHCELDMSFLLSVSCGIIPFANHDHARRVLYQAQKHSQQAIGFPT 750

Query: 2447 TNPSIRVDTNSHQLYYPQRSLFRTMLSDCLGKSRYSDHHKGMVPRPDFFNGQCAIVAVNV 2626
            TNP IRVDT SHQL+YPQR LF+TM SDCLGK  Y+    G +P+ + FNGQ AIVAVNV
Sbjct: 751  TNPDIRVDTLSHQLHYPQRPLFQTMTSDCLGKRGYAPSQNGFIPKFECFNGQNAIVAVNV 810

Query: 2627 HLGYNQEDSLVMNRASLERGMFRTEHVRSYKAEVENSEGAGKRLKADEIVSFGKIQSKIG 2806
            HLGYNQEDS+VMNRASLERGMFR+EH+RSYKA+V+N E   KR K D+  +F KI SK G
Sbjct: 811  HLGYNQEDSIVMNRASLERGMFRSEHIRSYKADVDNKESTDKRRKPDDCFNFAKIPSKNG 870

Query: 2807 RVDSLDDDGFPYIGANLQTGDIVIGKHAAAGVDHSIKLKHTERGMVQKVVLSANDEGKNF 2986
            RVDSLDDDGFP+IGANLQ+GDIVIG+ A +G DHSIKLKHTE+GMVQKVVLS+ND+GKNF
Sbjct: 871  RVDSLDDDGFPFIGANLQSGDIVIGRCAESGADHSIKLKHTEKGMVQKVVLSSNDDGKNF 930

Query: 2987 AVVSLRQVRAPCLGDKFSSMHGQKGVLGFLESQENFPFNKDGIVPDIVINPHAFPSRQTP 3166
            AVVSLRQVR P LGDKFSSMHGQKGVLG+LESQENFPF   GIVPDIVINPHAFPSRQTP
Sbjct: 931  AVVSLRQVRQPILGDKFSSMHGQKGVLGYLESQENFPFTIQGIVPDIVINPHAFPSRQTP 990

Query: 3167 GQ--XXXXXXXXXXXXXXXXKYATPFSTPSVEDITAQLHRLGYSRWGGERVYDGRTGEKV 3340
            GQ                  ++ATPFSTPSV+ IT QLH+ G+SRWG ERVY+GRTGE V
Sbjct: 991  GQLLEAALGKGIALAKGIPLRHATPFSTPSVDAITEQLHKAGFSRWGNERVYNGRTGEMV 1050

Query: 3341 ESLIFMGPTFYQRLTHMAEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAH 3520
             SLIFMGPTFYQRL HM+EDKVKFRNTGPVHPLTRQPVADRKRFGG+KFGEMERDCL+AH
Sbjct: 1051 RSLIFMGPTFYQRLVHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGVKFGEMERDCLLAH 1110

Query: 3521 GAAANLHERLFTLSDSSQMHICRKCKKMANVIQRPVFGGRKIRGPYCRFCESVEDVVRVN 3700
            GA+ANLHERLFTLSDSSQMHIC +C  +AN+IQR + GGRK+RGPYCR C+S +D+VRVN
Sbjct: 1111 GASANLHERLFTLSDSSQMHICHRCHNVANIIQRSLMGGRKVRGPYCRICKSADDIVRVN 1170

Query: 3701 VPYGAKLLCQELFSMGISLSFDTELC 3778
            VPYGAKLLCQELF+MGI+L F+T +C
Sbjct: 1171 VPYGAKLLCQELFTMGINLKFETRIC 1196


>ref|XP_003527775.1| PREDICTED: DNA-directed RNA polymerases IV and V subunit 2-like
            [Glycine max]
          Length = 1205

 Score = 1539 bits (3984), Expect = 0.0
 Identities = 762/1171 (65%), Positives = 919/1171 (78%), Gaps = 9/1171 (0%)
 Frame = +2

Query: 293  VLQEVDKGFLKAFCKKASTAFFEQYGLISHQINSFNDFVDHGIQQLFDSIGEVVIEPGYD 472
            +L+E+ +  +K +CKKAS  FF +YGLISHQINSFN F+  G+Q+ F+S G++V+ PG+D
Sbjct: 42   ILEELGEDIVKYWCKKASMLFFNEYGLISHQINSFNHFIHTGLQKTFESFGDLVVTPGFD 101

Query: 473  PSKRGDGE-WRRATLKFGKVTLEPPTFWTGEKFSSADGAKDYLDLLPRHAHLQNMTYSSR 649
            PSK+G+ E +R A++KFG V L+ P FW GE      G      +LPRHA +Q MTY+S+
Sbjct: 102  PSKKGENEHFRYASVKFGNVKLDKPMFWGGE------GNAQEFKMLPRHARIQRMTYASK 155

Query: 650  IKVETHLQVYTEGLSRSDKFKTGVDTVVEKTILNEYHTEVNFGRLPVMVKSDLCWMSKHE 829
            +K++  +QVY     RSDKFKTG    +++ ++ E   E+  GRLPVMVKSDLCWM + E
Sbjct: 156  VKIQVKVQVYVPKKVRSDKFKTGKAEFLDREVMKEDEREIIIGRLPVMVKSDLCWMKEAE 215

Query: 830  ERDCEFDQGGYFVIKGAEKTFIAQEQICLKRLWVAKEPTWSIAYRPVSKRKRVFIKMV-- 1003
            + D EFD GGYF++KGAEKTFIAQEQ+ LKRLWV   P W IAY+   KR R+ IK+V  
Sbjct: 216  KEDDEFDHGGYFIVKGAEKTFIAQEQLYLKRLWVMNSPGWMIAYKSQMKRNRMVIKLVGN 275

Query: 1004 PKVEHLVAGEKILTAYFYVAEIPVWLMFFALGVPNDREVVKLIGLDPEEDDIANILVPSI 1183
             + E +  G+  L  YF   E+PVW++FFALGV +D+E+V LIG   ++  I NIL  S+
Sbjct: 276  SRGEEVENGDMSLAVYFLSVEVPVWVLFFALGVSSDKEIVDLIGCGNDDVRIQNILFASV 335

Query: 1184 HDADKKFDGFRKGGNAIKHIKELMQGCRYPPTESVEELISTYLFPHLTSRGQKASFLAYM 1363
             DAD+K   FR+G +A++++++ ++  ++PP+ES++E +  Y+FP ++   +KA FLAYM
Sbjct: 336  RDADEKCGAFRRGRHAVQYLEKCVKSVQFPPSESMQECLEMYVFPGISGLNRKARFLAYM 395

Query: 1364 VKCLLEAYRGRRKVDNRDDMRNKXXXXXXXXXXXXXXVHIKHAERRMVKAMQRDLYKDRE 1543
            VK LL AY GRRK DNRDD RNK              VHI HA +RM KA+QRDLY DR+
Sbjct: 396  VKGLLLAYTGRRKCDNRDDFRNKRLELASELLDRELKVHIAHARKRMAKALQRDLYGDRD 455

Query: 1544 VQSIDHYLDASIITNGLSRAFSTGAWVHPFKRMERIAGVVASLRRTNPLQAVCDLRRTRQ 1723
            V+ I+HYLDASIITNGL RAFSTGAW HP+KRMERI+GVVA++ RTNPLQ + +LRR RQ
Sbjct: 456  VRPIEHYLDASIITNGLQRAFSTGAWSHPYKRMERISGVVANVGRTNPLQTMAELRRARQ 515

Query: 1724 QVSYTGRVGDARYPHPSHWGKVCFLSTPDGENCGLVKNLASLGIVSTNILEHAN-LLKKF 1900
            QV YTG+VGDARYPHPSHWGKVCFLSTPDGENCGLVKNLA  G+VST++   +  +L K 
Sbjct: 516  QVQYTGKVGDARYPHPSHWGKVCFLSTPDGENCGLVKNLAVTGLVSTDVSAVSEYILPKL 575

Query: 1901 HESGM-ELVDDMSCLLDGKHRVFLDGDWVGVCKDSSSFVAKLRRRRRKLEVPYQIEIKRD 2077
             + GM ELVDD S  L  K +V L+GDWVGVC DSSSFVA+LR RRR+ E+P+Q+EIKRD
Sbjct: 576  LDCGMEELVDDTSTHLGNKDKVLLNGDWVGVCPDSSSFVAELRSRRRRNELPHQVEIKRD 635

Query: 2078 KHHGEVRIFADAGRILRPLFVVQNLKKIKDLKGHF-SFQSLLSSGIVEFIGPEEEEDCQT 2254
            +   EVRI++DAGRILRPL VV NL KIK  K    SFQSLL  G++E IGPEEEEDC T
Sbjct: 636  QSQHEVRIYSDAGRILRPLLVVGNLLKIKGFKSDCNSFQSLLDKGVIELIGPEEEEDCCT 695

Query: 2255 AWGIDYLFTAELENPPVKYSHCEFDSSFLLGLSTGIIPFANHDHARRVLYQSAKHSQQAI 2434
            AWG++YLF  E +   VKY+HCE D SFLLGLS  ++PFANHDHARRVLYQS KHS QAI
Sbjct: 696  AWGVEYLFGKEGKR-SVKYTHCELDMSFLLGLSCSLVPFANHDHARRVLYQSQKHSSQAI 754

Query: 2435 GYSTTNPSIRVDTNSHQLYYPQRSLFRTMLSDCLGK---SRYSDHHKGMVPRPDFFNGQC 2605
            G+STTNP+IRVDT SHQL+YPQ+ LFRTM SDCLGK   S   +    + P+ +F+NGQ 
Sbjct: 755  GFSTTNPNIRVDTLSHQLHYPQKPLFRTMASDCLGKPDNSLGQNKISKIPPKAEFYNGQN 814

Query: 2606 AIVAVNVHLGYNQEDSLVMNRASLERGMFRTEHVRSYKAEVENSEGAGKRLKADEIVSFG 2785
            AIVAVNVHLGYNQEDSLVMNRASL+RGMFR+EH+RSYK+E++N E + K+ K ++IV+F 
Sbjct: 815  AIVAVNVHLGYNQEDSLVMNRASLQRGMFRSEHIRSYKSEIDNKESSDKKRKPEDIVNFA 874

Query: 2786 KIQSKIGRVDSLDDDGFPYIGANLQTGDIVIGKHAAAGVDHSIKLKHTERGMVQKVVLSA 2965
            K+QSKIGRVDSLDDDGFPY+GANLQ+GDI+IGK A +G D+S+KLKHTERG VQKVVLS+
Sbjct: 875  KLQSKIGRVDSLDDDGFPYVGANLQSGDIIIGKGAESGADNSVKLKHTERGYVQKVVLSS 934

Query: 2966 NDEGKNFAVVSLRQVRAPCLGDKFSSMHGQKGVLGFLESQENFPFNKDGIVPDIVINPHA 3145
            NDEGKNFAVVSLRQVR+P LGDKFSSMHGQKGVLGFLESQENFPF + GIVPDIVINPHA
Sbjct: 935  NDEGKNFAVVSLRQVRSPVLGDKFSSMHGQKGVLGFLESQENFPFTRQGIVPDIVINPHA 994

Query: 3146 FPSRQTPGQXXXXXXXXXXXXXXXXKYATPFSTPSVEDITAQLHRLGYSRWGGERVYDGR 3325
            FPSRQTPGQ                + ATPFSTPSV+ IT QLHR G+SRWG ERVY+GR
Sbjct: 995  FPSRQTPGQLLEAALGKGIACGGILRQATPFSTPSVDAITEQLHRAGFSRWGNERVYNGR 1054

Query: 3326 TGEKVESLIFMGPTFYQRLTHMAEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERD 3505
            TGE V SLIFMGPTFYQRL HM+EDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERD
Sbjct: 1055 TGEMVRSLIFMGPTFYQRLHHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERD 1114

Query: 3506 CLIAHGAAANLHERLFTLSDSSQMHICRKCKKMANVIQRPVFGGRKIRGPYCRFCESVED 3685
            CLIAHGA+ANL+ERLFTLSDSSQ+HIC KCK +ANVI RPV GGRKIRGPYCR CES +D
Sbjct: 1115 CLIAHGASANLYERLFTLSDSSQIHICSKCKNVANVILRPVSGGRKIRGPYCRHCESADD 1174

Query: 3686 VVRVNVPYGAKLLCQELFSMGISLSFDTELC 3778
            +V  +VPYGAKLLCQELFSMGI+L F+T+LC
Sbjct: 1175 IVVAHVPYGAKLLCQELFSMGINLKFETQLC 1205