BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Mentha29_contig00005718
         (1716 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AHL27584.1| RNA-dependent RNA polymerase 1 [Salvia miltiorrhiza]   703   0.0  
gb|EYU28878.1| hypothetical protein MIMGU_mgv1a000505mg [Mimulus...   652   0.0  
gb|AHL27585.1| RNA-dependent RNA polymerase 2 [Salvia miltiorrhiza]   631   e-178
emb|CAA09697.1| RNA-directed RNA polymerase [Nicotiana tabacum]       538   e-150
ref|XP_007045552.1| RNA-dependent RNA polymerase 1 isoform 1 [Th...   532   e-148
gb|EPS70289.1| hypothetical protein M569_04468, partial [Genlise...   528   e-147
gb|ABO92977.1| putative RNA-dependent RNA-polymerase [Solanum tu...   525   e-146
gb|ABO92978.1| putative RNA-dependent RNA-polymerase [Solanum tu...   523   e-146
gb|ABO93004.1| putative RNA-dependent RNA-polymerase [Solanum tu...   522   e-145
ref|NP_001234319.1| RNA-directed RNA polymerase [Solanum lycoper...   520   e-145
ref|XP_006366108.1| PREDICTED: RNA-dependent RNA polymerase 1-li...   520   e-144
gb|ABV24845.1| RNA-dependent RNA polymerase [Nicotiana glutinosa...   518   e-144
gb|ABL68088.1| putative RNA-directed RNA polymerase 1 [Nicotiana...   517   e-144
gb|EXB53859.1| RNA-dependent RNA polymerase 1 [Morus notabilis]       516   e-144
ref|XP_002281315.1| PREDICTED: RNA-dependent RNA polymerase 1-li...   515   e-143
gb|ABO93006.1| putative RNA-dependent RNA-polymerase [Solanum tu...   514   e-143
ref|XP_006469265.1| PREDICTED: RNA-dependent RNA polymerase 1-li...   514   e-143
ref|XP_002311536.1| RNA-directed RNA Polymerase family protein [...   513   e-143
ref|XP_006366109.1| PREDICTED: RNA-dependent RNA polymerase 1-li...   512   e-142
ref|XP_002284914.1| PREDICTED: RNA-dependent RNA polymerase 1 [V...   511   e-142

>gb|AHL27584.1| RNA-dependent RNA polymerase 1 [Salvia miltiorrhiza]
          Length = 1118

 Score =  703 bits (1815), Expect = 0.0
 Identities = 338/426 (79%), Positives = 372/426 (87%)
 Frame = -2

Query: 1280 LMYGTSYLKVWDQDMDIVPNPRTYEDEMEGVTLNVGVQTSKENFSVLWKAADVTVKFGNK 1101
            L   T YLK W+Q  DIVPNPRTY++ +EGVTLN+G Q S++ FSVLWKA+DV++KFG  
Sbjct: 8    LRCNTYYLKFWEQKTDIVPNPRTYDNVVEGVTLNLGCQISEDEFSVLWKASDVSIKFGTG 67

Query: 1100 LKNMQLFLSHESVEYRLQLYHDNIWQIVLYNSGSRGRAGKVLLIQLYGAPRIYKKLDDCA 921
            LKNM LFL HESVEYRLQLY+DNIWQIVLYNSG  G+A +VLLIQLYGAPRI+KKL D  
Sbjct: 68   LKNMHLFLCHESVEYRLQLYYDNIWQIVLYNSG--GQAAQVLLIQLYGAPRIHKKLPDSV 125

Query: 920  HSYFKQTPDDQWVRTTDFTPSSSIGQSSGICLHLPPGTTLPNFADNFVNYEVSKSPFSLE 741
            +SYF+QTPDDQWVRTTDFTPSS IGQSSG+CL  P G  LP F  +FV Y+ SK PF LE
Sbjct: 126  YSYFQQTPDDQWVRTTDFTPSSCIGQSSGMCLQFPSGIKLPEFERHFVYYKESKKPFFLE 185

Query: 740  NGVPFCGNQDLVPIIQPPRGLELPYRLLFKVCCLVQNGCLPGPKLDKNFYKLINPEKFDI 561
            NGVPFC N DLVPI+QP RGLELPYRLLFKVCCLVQ GCLPGPKLD NFY+L+NP+ FDI
Sbjct: 186  NGVPFCENLDLVPIMQP-RGLELPYRLLFKVCCLVQTGCLPGPKLDDNFYRLLNPKSFDI 244

Query: 560  AYLEQVLEKIYYMKECCYDPHSWLIEQHQNYRTFKKPRPPPADDDLVHIHRMQVTPTKVY 381
             YLEQ+LEK+YY+KECCYDPHSWLIEQHQNY TFKKP+PP  +DDLVHIHR+QVTPTKVY
Sbjct: 245  TYLEQLLEKLYYLKECCYDPHSWLIEQHQNYCTFKKPKPPAVNDDLVHIHRVQVTPTKVY 304

Query: 380  FYGPEVNVSNRVLRQFRDHIDNFLRVSFVEEDWSKMYSADLSPRGAGDDESRRTKLYERT 201
            F+GPE NVSNRVLR F DHIDNFLRVSFVEEDWSKMY++DLSPRGAG DE+ RTKLYER 
Sbjct: 305  FHGPEANVSNRVLRNFHDHIDNFLRVSFVEEDWSKMYASDLSPRGAGGDENTRTKLYERV 364

Query: 200  LSTLRNGIRIGSKKFEFLAFSSSQLRENSLWMFAPTIDLNADDIRQWMGDFSSIRNVAKY 21
            LSTLRNGI IGSKKFEFLAFSSSQLRENSLWMFAP   LNADDIR+WMGDFSSIRNVAKY
Sbjct: 365  LSTLRNGITIGSKKFEFLAFSSSQLRENSLWMFAPVDGLNADDIRRWMGDFSSIRNVAKY 424

Query: 20   AARLGQ 3
            AARLGQ
Sbjct: 425  AARLGQ 430


>gb|EYU28878.1| hypothetical protein MIMGU_mgv1a000505mg [Mimulus guttatus]
          Length = 1110

 Score =  652 bits (1683), Expect = 0.0
 Identities = 327/503 (65%), Positives = 389/503 (77%), Gaps = 3/503 (0%)
 Frame = -2

Query: 1502 MGKTIQVSGFPRLLSAENVKMFLEQRMELLGRGTGTIFAIQVKSAKQGVRAYARVQFTDV 1323
            MG+TIQV GFP L++AE VK FLE        G GT+ A++VK+AK G RAYARVQFT++
Sbjct: 1    MGRTIQVFGFPYLVAAELVKKFLENYT-----GEGTVIALEVKTAKVGRRAYARVQFTNI 55

Query: 1322 EYAAMFKSLANLGILMYGTSYLKVWDQDMDIVPNPRTYEDEMEGVTLNVGVQTSKENFSV 1143
              A     LA    L YGTSYLK ++ D+DIV NPRT+  EME VTLN G Q S   FSV
Sbjct: 56   RCAETIIDLAK-NRLYYGTSYLKAYESDIDIVQNPRTFAHEMENVTLNFGCQISPHKFSV 114

Query: 1142 LWKAADVTVKFGNKLKNMQLFLSHESVEYRLQLYHDNIWQIVLYNSGSRGRAGKVLLIQL 963
            LWK   VTVKFG  +K M  FL H SVEY++QL ++NIWQIVLYNS   G++ K+L+IQL
Sbjct: 115  LWKGESVTVKFGTGMKKMHFFLRHNSVEYKMQLSYENIWQIVLYNS--YGQSSKLLVIQL 172

Query: 962  YGAPRIYKKLDDCAHSYFKQTPDDQWVRTTDFTPSSSIGQSSGICLHLPPGTTLPNFADN 783
            +GAPRIYKKL    +SYF  T DDQWVRTTDFT  S IGQSS +CL LP G  LPNF DN
Sbjct: 173  FGAPRIYKKLSGSVYSYFMVTQDDQWVRTTDFT-QSLIGQSSSLCLQLPYGMRLPNFRDN 231

Query: 782  FVNYEVSKSPFSLENGVPFCGNQDLVPIIQPPRGLELPYRLLFKVCCLVQNGCLPGPKLD 603
            F+ Y+ S++PF LE GVPF  N DLVPI++PP  ++LPY LLFKVC LVQ GCLPGPKLD
Sbjct: 232  FLYYKESETPFRLETGVPFSHNSDLVPIVRPPIDIKLPYTLLFKVCSLVQTGCLPGPKLD 291

Query: 602  KNFYKLINPEKFDIAYLEQVLEKIYYMKECCYDPHSWLIEQHQNYRTFKKPRPPPA---D 432
            ++F+ L+NP K DI Y+E  LEK+YY+KECCY+P +WL EQ++ YRT K+    PA   D
Sbjct: 292  RSFFDLVNPAKHDIRYIEHALEKLYYLKECCYNPAAWLKEQYERYRTSKEHPKSPAICLD 351

Query: 431  DDLVHIHRMQVTPTKVYFYGPEVNVSNRVLRQFRDHIDNFLRVSFVEEDWSKMYSADLSP 252
            D LV++HR+QVTPT+VYF GPEVNVSNRVLR +RD+IDNFLRVSFV+E+W KMYS DLSP
Sbjct: 352  DGLVYVHRVQVTPTRVYFSGPEVNVSNRVLRHYRDYIDNFLRVSFVDEEWDKMYSTDLSP 411

Query: 251  RGAGDDESRRTKLYERTLSTLRNGIRIGSKKFEFLAFSSSQLRENSLWMFAPTIDLNADD 72
            R A  DE++RTKLYER +S LR+G+RIG +KF+FLAFSSSQLR+NSLWMFAPT  LNAD 
Sbjct: 412  RVAAGDENKRTKLYERVISILRDGVRIGDRKFDFLAFSSSQLRDNSLWMFAPTDGLNADG 471

Query: 71   IRQWMGDFSSIRNVAKYAARLGQ 3
            IR+WMGDFSSIRNVAKYAARLGQ
Sbjct: 472  IREWMGDFSSIRNVAKYAARLGQ 494


>gb|AHL27585.1| RNA-dependent RNA polymerase 2 [Salvia miltiorrhiza]
          Length = 1101

 Score =  631 bits (1627), Expect = e-178
 Identities = 318/506 (62%), Positives = 391/506 (77%), Gaps = 6/506 (1%)
 Frame = -2

Query: 1502 MGKTIQVSGFPRLLSAENVKMFLEQRMELLGRGTGTIFAIQVKSAKQGVRAYARVQFTDV 1323
            M KT+ VSGFP+L++AE V+ FLE          G I A++VK  K+G RAYA+VQFT  
Sbjct: 1    MRKTLHVSGFPKLIAAEEVRKFLEGHT-----CEGAIEALEVKPGKRGSRAYAKVQFTSK 55

Query: 1322 EYAAMFKSLANLGILMY---GTSYLKVWDQDMDIVPNPRTYEDEMEGVTLNVGVQTSKEN 1152
            E A     LAN+G+  Y     SYLK ++QD + V N R++  E++G+TLN G Q SK+ 
Sbjct: 56   EDADKIIHLANIGLYYYLGNSRSYLKAFEQDTNFV-NHRSFMHELDGLTLNFGCQVSKDR 114

Query: 1151 FSVLWKAADVTVKFGNKLKNMQLFLSHESVEYRLQLYHDNIWQIVLYNSGSRGRAGKVLL 972
            FSVLW+AADV+VKFG+ L  M LF+  + VEYRLQL ++NIWQIVLYNS  +    ++LL
Sbjct: 115  FSVLWRAADVSVKFGSSLNKMHLFVCDDLVEYRLQLSYENIWQIVLYNSSVQTE--RLLL 172

Query: 971  IQLYGAPRIYKKLDDCAHSYFKQTPDDQWVRTTDFTPSSSIGQSSGICLHLPPGTTLPNF 792
            IQL+GAPRIYKKL+   +S++++TPDDQWVRTTDFTPS  IGQSSG+CL LP    LP+F
Sbjct: 173  IQLFGAPRIYKKLEYSVYSFYRETPDDQWVRTTDFTPSC-IGQSSGLCLQLPRHVKLPDF 231

Query: 791  ADNFVNYEVSKSPFSLENGVPFCGNQDLVPIIQPPRGLELPYRLLFKVCCLVQNGCLPGP 612
             +NF++Y VS+ PF L NG PFCGN  LVPI+QPPRGLELPY+LLFKVC LVQ GCLPG 
Sbjct: 232  KNNFMHYTVSEEPFQLVNGAPFCGNLPLVPIVQPPRGLELPYKLLFKVCSLVQTGCLPGM 291

Query: 611  KLDKNFYKLINPEKFDIAYLEQVLEKIYYMKECCYDPHSWLIEQHQNYRTFKK-PRPPPA 435
            KLD  F++ +NP ++ I Y+E  L+K+YY+KECCYDP +WL EQ++ Y+TF++ P+PP  
Sbjct: 292  KLDTEFFQCLNPRRYAIRYIEHALDKLYYIKECCYDPVAWLREQYRKYQTFEELPKPPTI 351

Query: 434  --DDDLVHIHRMQVTPTKVYFYGPEVNVSNRVLRQFRDHIDNFLRVSFVEEDWSKMYSAD 261
              DD LV+IHR+QVTPT+VYF GPEVN+SNRVLRQF  HIDNFLRVSF++E+W KMYS D
Sbjct: 352  SLDDGLVYIHRVQVTPTRVYFAGPEVNMSNRVLRQFSAHIDNFLRVSFIDEEWDKMYSTD 411

Query: 260  LSPRGAGDDESRRTKLYERTLSTLRNGIRIGSKKFEFLAFSSSQLRENSLWMFAPTIDLN 81
            LSP+ A    + RTKLYER LSTLRNGI IG K+F+FLAFSSSQLRENSLWMFAP   L 
Sbjct: 412  LSPKVATGVGNGRTKLYERVLSTLRNGITIGEKRFQFLAFSSSQLRENSLWMFAPVDGLT 471

Query: 80   ADDIRQWMGDFSSIRNVAKYAARLGQ 3
            ADDIR+WMGDFSSIRNVAKYAARLGQ
Sbjct: 472  ADDIRRWMGDFSSIRNVAKYAARLGQ 497


>emb|CAA09697.1| RNA-directed RNA polymerase [Nicotiana tabacum]
          Length = 1116

 Score =  538 bits (1386), Expect = e-150
 Identities = 283/505 (56%), Positives = 361/505 (71%), Gaps = 5/505 (0%)
 Frame = -2

Query: 1502 MGKTIQVSGFPRLLSAENVKMFLEQRMELLGRGTGTIFAIQVKSAKQGVRAYARVQFTDV 1323
            MGKTIQV GFP LLSAE VK FLE        G GT++A++VK +K G RA+A+VQF + 
Sbjct: 1    MGKTIQVFGFPYLLSAEAVKKFLENHT-----GNGTVYALEVKQSKGGRRAFAKVQFANN 55

Query: 1322 EYAAMFKSLANLGILMYGTSYLKVWDQDMDIVPNPRTYEDEMEGVTLNVGVQTSKENFSV 1143
            + A     LA+ G L YG SYLK W+   DIV  PRTY + M+GVTLN G Q S + F+V
Sbjct: 56   KSAEFIIDLASKG-LYYGPSYLKAWEMKTDIV-QPRTYVEHMDGVTLNFGCQISDKKFAV 113

Query: 1142 LWKAADVTVKFGNKLKNMQLFLSHESVEYRLQLYHDNIWQIVLYNSGSRGRAGKVLLIQL 963
            L  + DV++KFG  LK +  FLSH S +Y+LQL ++NIWQ+VL+     G+  + LL+QL
Sbjct: 114  LG-SKDVSIKFGIGLKKIYFFLSHASADYKLQLSYENIWQVVLHRP--YGQNAQFLLLQL 170

Query: 962  YGAPRIYKKLDDCAHSYFKQTPDDQWVRTTDFTPSSSIGQSSGICLHLPPGTTLPNFADN 783
            +GAPRIYK+L+D  +S+FK+TPDDQWVRTTDFTPS  IG SS +CL    G  LPNF+++
Sbjct: 171  FGAPRIYKRLEDSCYSFFKETPDDQWVRTTDFTPSW-IGLSSSLCLEFRNGVQLPNFSES 229

Query: 782  FVNYEVSKSPFSLENGVPFCGNQDL--VPIIQPPRGLELPYRLLFKVCCLVQNGCLPGPK 609
            F  Y+ S + F L+ G  F  +Q L  VPI+  P G+ELPY++LFK+  L+Q+GC PG  
Sbjct: 230  FFYYKESMNQFILQTGFTFSFSQKLALVPIVHLPEGIELPYKILFKISSLIQHGCFPGLA 289

Query: 608  LDKNFYKLINPEKFDIAYLEQVLEKIYYMKECCYDPHSWLIEQHQNYRTFKK-PRPPPA- 435
            L+ NF++L++P + +IA +E  LEK+YY+KECCYDP  WL EQ+  Y   ++ P+ PP  
Sbjct: 290  LNFNFFQLVDPRRRNIACIEHALEKLYYLKECCYDPVRWLTEQYDEYLKGRQLPKSPPIT 349

Query: 434  -DDDLVHIHRMQVTPTKVYFYGPEVNVSNRVLRQFRDHIDNFLRVSFVEEDWSKMYSADL 258
             DD LV++ R+ VTP KVYF GPEVNVSNRVLR + + I+NFLRVSFV+E+W K++S DL
Sbjct: 350  LDDGLVYVRRVVVTPCKVYFCGPEVNVSNRVLRNYSEDINNFLRVSFVDEEWEKIHSTDL 409

Query: 257  SPRGAGDDESRRTKLYERTLSTLRNGIRIGSKKFEFLAFSSSQLRENSLWMFAPTIDLNA 78
             PR A      RT +YER LSTLRNG  IG K+FEFLAFSSSQLR+NS+WMFA    L A
Sbjct: 410  LPR-ASTGNGTRTDIYERILSTLRNGFIIGDKRFEFLAFSSSQLRDNSVWMFASRPGLTA 468

Query: 77   DDIRQWMGDFSSIRNVAKYAARLGQ 3
            +DIR WMGDF  IRNVAKYAARLGQ
Sbjct: 469  NDIRTWMGDFRQIRNVAKYAARLGQ 493


>ref|XP_007045552.1| RNA-dependent RNA polymerase 1 isoform 1 [Theobroma cacao]
            gi|590697846|ref|XP_007045553.1| RNA-dependent RNA
            polymerase 1 isoform 1 [Theobroma cacao]
            gi|590697850|ref|XP_007045554.1| RNA-dependent RNA
            polymerase 1 isoform 1 [Theobroma cacao]
            gi|508709487|gb|EOY01384.1| RNA-dependent RNA polymerase
            1 isoform 1 [Theobroma cacao] gi|508709488|gb|EOY01385.1|
            RNA-dependent RNA polymerase 1 isoform 1 [Theobroma
            cacao] gi|508709489|gb|EOY01386.1| RNA-dependent RNA
            polymerase 1 isoform 1 [Theobroma cacao]
          Length = 1109

 Score =  532 bits (1371), Expect = e-148
 Identities = 279/511 (54%), Positives = 350/511 (68%), Gaps = 11/511 (2%)
 Frame = -2

Query: 1502 MGKTIQVSGFPRLLSAENVKMFLEQRMELLGRGTGTIFAIQVKSAKQGVRAYARVQFTDV 1323
            MGKTIQVS FP  + AE VK FLE     L  G  T++A++++  K G RAYA VQFT  
Sbjct: 1    MGKTIQVSRFPSNVHAEEVKTFLE-----LYTGKETVYALKIRQQKNGGRAYAIVQFTKS 55

Query: 1322 EYAAMFKSLANLGILMYGTSYLKVWDQDMDIVPNPRTYEDEMEGVTLNVGVQTSKENFSV 1143
              A +   L N   L YG+SYLK  + + DIVP PRT+   MEGVTL+ G Q S E F V
Sbjct: 56   TDAELIIRLTNQR-LYYGSSYLKAREMENDIVPKPRTFLHTMEGVTLHFGCQVSNEKFYV 114

Query: 1142 LWKAADVTVKFGNKLKNMQLFLSHESVEYRLQLYHDNIWQIVLYNSGSRGRAGKVLLIQL 963
            LW+  DVTV FG  ++ +Q  LSH  VEYRL L+++NIWQI L+    R +  K LLIQL
Sbjct: 115  LWEEVDVTVNFGMGMRKLQFLLSHHCVEYRLDLFYENIWQIELHRP--RNQTSKYLLIQL 172

Query: 962  YGAPRIYKK--------LDDCAHSYFKQTPDDQWVRTTDFTPSSSIGQSSGICLHLPPGT 807
            +GAPRIY+K         ++   +YF   PDDQWVRTTDFT SS IGQSS +CL LP   
Sbjct: 173  FGAPRIYEKDVRSSGLVFENPLLNYFMDVPDDQWVRTTDFTQSSCIGQSSVLCLELPYYL 232

Query: 806  TLPNFADNFVNYEVSKSPFSLENGVPFCGNQDLVPIIQPPRGLELPYRLLFKVCCLVQNG 627
             LPNF +NF  Y+ S+  F LE+G  +  N +LVPI+ P  G++LPY +LFK+  LVQNG
Sbjct: 233  QLPNFRENFAYYKESEGKFVLESGSSYSRNLNLVPIVGPSLGIDLPYEILFKINLLVQNG 292

Query: 626  CLPGPKLDKNFYKLINPEKFDIAYLEQVLEKIYYMKECCYDPHSWLIEQHQNYRTFKKPR 447
            C+PGP LD NFY+L+NP + D  Y++  LEK+YY+KECC++P  WL+EQ++ Y   KK  
Sbjct: 293  CIPGPALDANFYRLVNPCRIDKVYIDHALEKLYYLKECCFEPSKWLLEQYKGYIASKKNP 352

Query: 446  PPPA---DDDLVHIHRMQVTPTKVYFYGPEVNVSNRVLRQFRDHIDNFLRVSFVEEDWSK 276
              P    DD LV++ R+Q+TP++VYF GPE+NVSNRVLR F D IDNFLR++FV+E+  K
Sbjct: 353  GSPVISLDDGLVNVRRVQITPSRVYFCGPEINVSNRVLRHFHDDIDNFLRITFVDEELEK 412

Query: 275  MYSADLSPRGAGDDESRRTKLYERTLSTLRNGIRIGSKKFEFLAFSSSQLRENSLWMFAP 96
            ++S DL  R      +R T++Y R LSTL+NGI IG K+FEFLAFSSSQLRENS WMFA 
Sbjct: 413  IHSTDLLTR------NRITEIYGRILSTLKNGIVIGDKQFEFLAFSSSQLRENSAWMFAS 466

Query: 95   TIDLNADDIRQWMGDFSSIRNVAKYAARLGQ 3
               L A DIR WMG+FS IRNVAKYAARLGQ
Sbjct: 467  REGLTAADIRTWMGEFSKIRNVAKYAARLGQ 497


>gb|EPS70289.1| hypothetical protein M569_04468, partial [Genlisea aurea]
          Length = 1095

 Score =  528 bits (1360), Expect = e-147
 Identities = 268/501 (53%), Positives = 347/501 (69%), Gaps = 1/501 (0%)
 Frame = -2

Query: 1502 MGKTIQVSGFPRLLSAENVKMFLEQRMELLGRGTGTIFAIQVKSAKQGVRAYARVQFTDV 1323
            MG T+ + GFP  + A++VK  +E+       G GT+ A++V+++K G RAYA VQF D 
Sbjct: 1    MGLTVMIFGFPSRVPADSVKQLVERYT-----GQGTVVALKVEASKSGPRAYAVVQFLDA 55

Query: 1322 EYAAMFKSLANLGILMYGTSYLKVWDQDMDIVPNPRTYEDEMEGVTLNVGVQTSKENFSV 1143
              A M     N   L YG+SYLKV   D ++V NP T    ++ VTL+ G Q S   FSV
Sbjct: 56   RSAEMIVHAQNS--LYYGSSYLKVRYSDKELVRNPATNLQLIDQVTLHFGCQISGNKFSV 113

Query: 1142 LWKAADVTVKFGNKLKNMQLFLSHESVEYRLQLYHDNIWQIVLYNSGSRGRAGKVLLIQL 963
            LW  +DVTVKFG +LK +   L      Y LQL + +IW+ VLYN  S  R    LLIQL
Sbjct: 114  LWSCSDVTVKFGTQLKTISFILFDGLYNYMLQLSYKSIWKTVLYNPSSGRRK---LLIQL 170

Query: 962  YGAPRIYKKLDDCAHSYFKQTPDDQWVRTTDFTPSSSIGQSSGICLHLPPGTTLPNFADN 783
            +GAPRI KK++   +SY+    +DQWVRTTDFT ++ IGQSSG+CL  P G+ LP F D+
Sbjct: 171  FGAPRISKKVEGSPYSYYNVYTEDQWVRTTDFTRAALIGQSSGLCLEFPHGSRLPRFRDD 230

Query: 782  FVNYEVSKSPFSLENGVPFCGNQDLVPIIQPPRGLELPYRLLFKVCCLVQNGCLPGPKLD 603
            FV ++  +  F L+ G  F  N  L PI+ PPRGL LPY ++FK+C LVQ GC+PGP+LD
Sbjct: 231  FVYFKEKEEEFHLQEGYSFSQNSVLAPIVGPPRGLSLPYNIVFKICSLVQMGCIPGPELD 290

Query: 602  KNFYKLINPEKFDIAYLEQVLEKIYYMKECCYDPHSWLIEQHQNYRTFKKPRPP-PADDD 426
             NFY+++NP+  DI Y+E  LEKI+Y+KECCYDP  WL  Q++ Y+T K   P    +  
Sbjct: 291  ANFYRMVNPQLVDIRYIEHALEKIFYLKECCYDPVKWLESQYRRYQTSKPSSPTISLEGG 350

Query: 425  LVHIHRMQVTPTKVYFYGPEVNVSNRVLRQFRDHIDNFLRVSFVEEDWSKMYSADLSPRG 246
            LV++ R+Q+TP++VYF GPE+NVSNRVLRQ++D ID+FLRVSFV+EDW K++S  LS + 
Sbjct: 351  LVYVRRVQITPSRVYFTGPEINVSNRVLRQYKDRIDDFLRVSFVDEDWDKLFSLTLSSK- 409

Query: 245  AGDDESRRTKLYERTLSTLRNGIRIGSKKFEFLAFSSSQLRENSLWMFAPTIDLNADDIR 66
                E  +T++YER LS LR GIRIG K+F+FLAFSSSQLRENSLWMFAP+  + ADDIR
Sbjct: 410  ---TEIGKTRIYERILSVLREGIRIGDKRFDFLAFSSSQLRENSLWMFAPSNGVTADDIR 466

Query: 65   QWMGDFSSIRNVAKYAARLGQ 3
            +WMGDF SIRNVAKYAARLGQ
Sbjct: 467  KWMGDFRSIRNVAKYAARLGQ 487


>gb|ABO92977.1| putative RNA-dependent RNA-polymerase [Solanum tuberosum]
          Length = 1115

 Score =  525 bits (1351), Expect = e-146
 Identities = 275/505 (54%), Positives = 359/505 (71%), Gaps = 5/505 (0%)
 Frame = -2

Query: 1502 MGKTIQVSGFPRLLSAENVKMFLEQRMELLGRGTGTIFAIQVKSAKQGVRAYARVQFTDV 1323
            MGKTIQV GFP LLSAE VK+FLE+       G GTI A++VK +K G RA+A+VQF D 
Sbjct: 1    MGKTIQVFGFPNLLSAEVVKLFLEKHT-----GYGTICALEVKQSKGGSRAFAKVQFVDN 55

Query: 1322 EYAAMFKSLANLGILMYGTSYLKVWDQDMDIVPNPRTYEDEMEGVTLNVGVQTSKENFSV 1143
              A    +LA+   L +G+SYLK W+   DIV   R Y D M+G+TLN G Q S++ F+V
Sbjct: 56   ISADKIINLASKR-LYFGSSYLKAWEMKTDIV-QLRAYVDHMDGITLNFGCQISEDKFAV 113

Query: 1142 LWKAADVTVKFGNKLKNMQLFLSHESVEYRLQLYHDNIWQIVLYNSGSRGRAGKVLLIQL 963
            L  + +V++KFG  LK    FLS  S +Y+LQL ++NIWQ+VL+     G+  + LLIQL
Sbjct: 114  LG-STEVSIKFGIGLKKFFFFLSSGSADYKLQLSYENIWQVVLHRP--YGQNAQFLLIQL 170

Query: 962  YGAPRIYKKLDDCAHSYFKQTPDDQWVRTTDFTPSSSIGQSSGICLHLPPGTTLPNFADN 783
            +GAPRIYK+L++  +S+FK+TPDDQWVRTTDFTPS  IG SS +CL    G  LPNF ++
Sbjct: 171  FGAPRIYKRLENSCYSFFKETPDDQWVRTTDFTPSW-IGLSSSLCLQFRRGVHLPNFQES 229

Query: 782  FVNYEVSKSPFSLENGVPFCGNQD--LVPIIQPPRGLELPYRLLFKVCCLVQNGCLPGPK 609
            F +Y   ++  +L+ G  F  +Q   LVP +QPP G+ +PY++LFK+  LVQ+GC+PGP 
Sbjct: 230  FFHYAERENNITLQTGFTFFVSQKSALVPNVQPPEGIAIPYKILFKISSLVQHGCIPGPA 289

Query: 608  LDKNFYKLINPEKFDIAYLEQVLEKIYYMKECCYDPHSWLIEQHQNYRTFKKPRPPPA-- 435
            L+  F++L++P++ ++A +EQ LEK+YY+KECCYDP  WL EQ+  Y   ++P   P+  
Sbjct: 290  LNVYFFRLVDPQRRNVACIEQALEKLYYLKECCYDPVRWLTEQYDGYLKGRQPPKSPSIT 349

Query: 434  -DDDLVHIHRMQVTPTKVYFYGPEVNVSNRVLRQFRDHIDNFLRVSFVEEDWSKMYSADL 258
             DD LV++ R+ VTP KVYF GPEVNVSNRVLR + + IDNFLRVSFV+E+W K+YS +L
Sbjct: 350  LDDGLVYVRRVLVTPCKVYFCGPEVNVSNRVLRNYSEDIDNFLRVSFVDEEWEKLYSTEL 409

Query: 257  SPRGAGDDESRRTKLYERTLSTLRNGIRIGSKKFEFLAFSSSQLRENSLWMFAPTIDLNA 78
             P+ A      RT +YER LSTLR G  IG KKFEFLAFSSSQLR+NS+WMFA    L  
Sbjct: 410  LPK-ASTGNGIRTNIYERILSTLRKGFVIGDKKFEFLAFSSSQLRDNSVWMFASRRGLTT 468

Query: 77   DDIRQWMGDFSSIRNVAKYAARLGQ 3
            +DIR WMGDFS I+NVAKYAARLGQ
Sbjct: 469  NDIRSWMGDFSQIKNVAKYAARLGQ 493


>gb|ABO92978.1| putative RNA-dependent RNA-polymerase [Solanum tuberosum]
          Length = 935

 Score =  523 bits (1348), Expect = e-146
 Identities = 277/507 (54%), Positives = 360/507 (71%), Gaps = 7/507 (1%)
 Frame = -2

Query: 1502 MGKTIQVSGFPRLLSAENVKMFLEQRMELLGRGTGTIFAIQVKSAKQGVRAYARVQFTDV 1323
            MGKTIQV GFPRLLSAE VK FLE+       G GT+ A++VK +K G RA+A+VQF D 
Sbjct: 1    MGKTIQVYGFPRLLSAEVVKSFLEKHT-----GYGTVCALEVKQSKGGSRAFAKVQFVDN 55

Query: 1322 EYAAMFKSLANLGILMYGTSYLKVWDQDMDIVPNPRTYEDEMEGVTLNVGVQTSKENFSV 1143
              A    +LA+   L +G+SYLK W+ + DIV     Y D M+G+TLN G Q S + F+V
Sbjct: 56   ISADKIINLASKR-LYFGSSYLKAWELETDIV-QLWAYVDHMDGITLNFGCQISDDKFAV 113

Query: 1142 LWKAADVTVKFGNKLKNMQLFLSHESVEYRLQLYHDNIWQIVLYNSGSRGRAGKVLLIQL 963
            L  + +V++KFG  LKN   FLS  S +Y+LQL ++NIWQ+VL+     G+  + LLIQL
Sbjct: 114  LG-STEVSIKFGIGLKNFFFFLSSGSADYKLQLSYENIWQVVLHRP--YGQNAQFLLIQL 170

Query: 962  YGAPRIYKKLDDCAHSYFKQTPDDQWVRTTDFTPSSSIGQSSGICLHLPPGTTLPNFADN 783
            +GAPRIYK+L++  +S+FK+TPDDQWVRTTDFTPS  IG SS +CL    G  LPNF ++
Sbjct: 171  FGAPRIYKRLENSCYSFFKETPDDQWVRTTDFTPSW-IGLSSSLCLQFRRGVHLPNFQES 229

Query: 782  FVNYEVSKSPFSLENGVPFCGNQD--LVPIIQPPRGLELPYRLLFKVCCLVQNGCLPGPK 609
            F +Y   ++  +L+ G  F  +Q   LVP +QPP G+ +PY++LFK+  LVQ+GC+PGP 
Sbjct: 230  FFHYAERENNITLQTGFTFFVSQKSALVPNVQPPEGIAIPYKILFKISSLVQHGCIPGPA 289

Query: 608  LDKNFYKLINPEKFDIAYLEQVLEKIYYMKECCYDPHSWLIEQHQNYRTFKKPRPPPA-- 435
            L+  F++L++P++ ++A +EQ LEK+YY+KECCYDP  WL EQ+  Y  FK  +PP +  
Sbjct: 290  LNVYFFRLVDPQRRNVACIEQALEKLYYLKECCYDPVRWLTEQYDGY--FKGRQPPKSPS 347

Query: 434  ---DDDLVHIHRMQVTPTKVYFYGPEVNVSNRVLRQFRDHIDNFLRVSFVEEDWSKMYSA 264
               DD LV++ R+ VTP KVYF GPEVNVSNRVLR + + IDNFLRVSFV+E+W K+YS 
Sbjct: 348  ITLDDGLVYVRRVLVTPCKVYFCGPEVNVSNRVLRNYSEDIDNFLRVSFVDEEWEKLYST 407

Query: 263  DLSPRGAGDDESRRTKLYERTLSTLRNGIRIGSKKFEFLAFSSSQLRENSLWMFAPTIDL 84
            +L P+ A      RT +YER LSTLR G  IG KKFEFLAFSSSQLR+NS+WMFA    L
Sbjct: 408  ELLPK-ASTGNGIRTNIYERILSTLRKGFVIGDKKFEFLAFSSSQLRDNSVWMFASRRGL 466

Query: 83   NADDIRQWMGDFSSIRNVAKYAARLGQ 3
             A+DIR WMGDFS I+NVAKYAAR GQ
Sbjct: 467  TANDIRSWMGDFSQIKNVAKYAARFGQ 493


>gb|ABO93004.1| putative RNA-dependent RNA-polymerase [Solanum tuberosum]
          Length = 841

 Score =  522 bits (1345), Expect = e-145
 Identities = 275/505 (54%), Positives = 357/505 (70%), Gaps = 5/505 (0%)
 Frame = -2

Query: 1502 MGKTIQVSGFPRLLSAENVKMFLEQRMELLGRGTGTIFAIQVKSAKQGVRAYARVQFTDV 1323
            MGKTIQV GFP LLSAE VK FLE+       G GT+ A++VK +K G RA+A+VQF D 
Sbjct: 1    MGKTIQVYGFPYLLSAEVVKSFLEKHT-----GYGTVCALEVKQSKGGSRAFAKVQFVDN 55

Query: 1322 EYAAMFKSLANLGILMYGTSYLKVWDQDMDIVPNPRTYEDEMEGVTLNVGVQTSKENFSV 1143
              A    +LA+   L +G+SYLK W+   DIV   R Y D M+G+TLN G Q S + F+V
Sbjct: 56   ISADKIINLASKR-LYFGSSYLKAWEMKTDIV-QLRAYVDHMDGITLNFGCQISDDKFAV 113

Query: 1142 LWKAADVTVKFGNKLKNMQLFLSHESVEYRLQLYHDNIWQIVLYNSGSRGRAGKVLLIQL 963
            L  + +V++KFG  LK    FLS  S +Y+LQL ++NIWQ+VL+     G+  + LLIQL
Sbjct: 114  LG-STEVSIKFGIGLKKFFFFLSSGSADYKLQLSYENIWQVVLHRP--YGQNAQFLLIQL 170

Query: 962  YGAPRIYKKLDDCAHSYFKQTPDDQWVRTTDFTPSSSIGQSSGICLHLPPGTTLPNFADN 783
            +GAPRIYK+L++  +S+FK+TPDDQWVRTTDF PS  IG SS +CL    G  LPNF ++
Sbjct: 171  FGAPRIYKRLENSCYSFFKETPDDQWVRTTDFAPSW-IGLSSSLCLQFRRGVHLPNFQES 229

Query: 782  FVNYEVSKSPFSLENGVPFCGNQD--LVPIIQPPRGLELPYRLLFKVCCLVQNGCLPGPK 609
            F +Y   ++  +L+ G  F  +Q   LVP +QPP G+ +PY++LFK+  LVQ+GC+PGP 
Sbjct: 230  FFHYTERENNITLQTGFTFFVSQKSALVPNVQPPEGIAIPYKILFKISSLVQHGCIPGPA 289

Query: 608  LDKNFYKLINPEKFDIAYLEQVLEKIYYMKECCYDPHSWLIEQHQNYRTFKKPRPPPA-- 435
            L+  F++L++P++ ++A +EQ LEK+YY+KECCYDP  WL EQ+  Y   ++P   P+  
Sbjct: 290  LNVYFFRLVDPQRRNVACIEQALEKLYYLKECCYDPVRWLTEQYDGYLKGRQPPKSPSIT 349

Query: 434  -DDDLVHIHRMQVTPTKVYFYGPEVNVSNRVLRQFRDHIDNFLRVSFVEEDWSKMYSADL 258
             DD LV++ R+ VTP KVYF GPEVNVSNRVLR + + IDNFLRVSFV+E+W K+YS DL
Sbjct: 350  LDDGLVYVRRVLVTPCKVYFCGPEVNVSNRVLRNYSEDIDNFLRVSFVDEEWEKLYSTDL 409

Query: 257  SPRGAGDDESRRTKLYERTLSTLRNGIRIGSKKFEFLAFSSSQLRENSLWMFAPTIDLNA 78
             P+ A      RT +YER LSTLR G  IG KKFEFLAFSSSQLR+NS+WMFA    L A
Sbjct: 410  LPK-ASTGNGIRTNIYERILSTLRKGFVIGDKKFEFLAFSSSQLRDNSVWMFASRPGLTA 468

Query: 77   DDIRQWMGDFSSIRNVAKYAARLGQ 3
            +DIR WMGDFS I+NVAKYAARLGQ
Sbjct: 469  NDIRTWMGDFSQIKNVAKYAARLGQ 493


>ref|NP_001234319.1| RNA-directed RNA polymerase [Solanum lycopersicum]
            gi|4038592|emb|CAA71421.1| RNA-directed RNA polymerase
            [Solanum lycopersicum]
          Length = 1114

 Score =  520 bits (1340), Expect = e-145
 Identities = 274/505 (54%), Positives = 356/505 (70%), Gaps = 5/505 (0%)
 Frame = -2

Query: 1502 MGKTIQVSGFPRLLSAENVKMFLEQRMELLGRGTGTIFAIQVKSAKQGVRAYARVQFTDV 1323
            MGKTIQV GFP LLSAE VK FLE+       G GT+ A++VK +K G RA+A+VQF D 
Sbjct: 1    MGKTIQVFGFPYLLSAEVVKSFLEKYT-----GYGTVCALEVKQSKGGSRAFAKVQFADN 55

Query: 1322 EYAAMFKSLANLGILMYGTSYLKVWDQDMDIVPNPRTYEDEMEGVTLNVGVQTSKENFSV 1143
              A    +LAN   L +G+SYLK W+   DIV   R Y D+M+G+TLN G Q S + F+V
Sbjct: 56   ISADKIITLAN-NRLYFGSSYLKAWEMKTDIV-QLRAYVDQMDGITLNFGCQISDDKFAV 113

Query: 1142 LWKAADVTVKFGNKLKNMQLFLSHESVEYRLQLYHDNIWQIVLYNSGSRGRAGKVLLIQL 963
            L  + +V+++FG  LK    FLS  S +Y+LQL ++NIWQ+VL+     G+  + LLIQL
Sbjct: 114  LG-STEVSIQFGIGLKKFFFFLSSGSADYKLQLSYENIWQVVLHRP--YGQNAQFLLIQL 170

Query: 962  YGAPRIYKKLDDCAHSYFKQTPDDQWVRTTDFTPSSSIGQSSGICLHLPPGTTLPNFADN 783
            +GAPRIYK+L++  +S+FK+TPDDQWVRTTDF PS  IG SS +CL    G  LPNF ++
Sbjct: 171  FGAPRIYKRLENSCYSFFKETPDDQWVRTTDFPPSW-IGLSSSLCLQFRRGVRLPNFEES 229

Query: 782  FVNYEVSKSPFSLENGVPFCGNQD--LVPIIQPPRGLELPYRLLFKVCCLVQNGCLPGPK 609
            F +Y   ++  +L+ G  F  +Q   LVP +QPP G+ +PY++LFK+  LVQ+GC+PGP 
Sbjct: 230  FFHYAERENNITLQTGFTFFVSQKSALVPNVQPPEGISIPYKILFKISSLVQHGCIPGPA 289

Query: 608  LDKNFYKLINPEKFDIAYLEQVLEKIYYMKECCYDPHSWLIEQHQNYRTFKKPRPPPA-- 435
            L+  F++L++P + ++A +E  LEK+YY+KECCYDP  WL EQ+  Y   ++P   P+  
Sbjct: 290  LNVYFFRLVDPRRRNVACIEHALEKLYYIKECCYDPVRWLTEQYDGYLKGRQPPKSPSIT 349

Query: 434  -DDDLVHIHRMQVTPTKVYFYGPEVNVSNRVLRQFRDHIDNFLRVSFVEEDWSKMYSADL 258
             DD LV++ R+ VTP KVYF GPEVNVSNRVLR + + IDNFLRVSFV+E+W K+YS DL
Sbjct: 350  LDDGLVYVRRVLVTPCKVYFCGPEVNVSNRVLRNYSEDIDNFLRVSFVDEEWEKLYSTDL 409

Query: 257  SPRGAGDDESRRTKLYERTLSTLRNGIRIGSKKFEFLAFSSSQLRENSLWMFAPTIDLNA 78
             P+ A      RT +YER LSTLR G  IG KKFEFLAFSSSQLR+NS+WMFA    L A
Sbjct: 410  LPK-ASTGSGVRTNIYERILSTLRKGFVIGDKKFEFLAFSSSQLRDNSVWMFASRPGLTA 468

Query: 77   DDIRQWMGDFSSIRNVAKYAARLGQ 3
            +DIR WMGDFS I+NVAKYAARLGQ
Sbjct: 469  NDIRAWMGDFSQIKNVAKYAARLGQ 493


>ref|XP_006366108.1| PREDICTED: RNA-dependent RNA polymerase 1-like [Solanum tuberosum]
          Length = 1115

 Score =  520 bits (1338), Expect = e-144
 Identities = 274/505 (54%), Positives = 356/505 (70%), Gaps = 5/505 (0%)
 Frame = -2

Query: 1502 MGKTIQVSGFPRLLSAENVKMFLEQRMELLGRGTGTIFAIQVKSAKQGVRAYARVQFTDV 1323
            MGKTIQV GFP LLSAE VK FLE+       G GT+ A++VK +K G RA+A+VQF D 
Sbjct: 1    MGKTIQVYGFPDLLSAEVVKSFLEKHT-----GYGTVCALEVKQSKGGSRAFAKVQFVDN 55

Query: 1322 EYAAMFKSLANLGILMYGTSYLKVWDQDMDIVPNPRTYEDEMEGVTLNVGVQTSKENFSV 1143
              A    +LA+   L +G+SYLK W+   DIV   R Y D M+G+TLN G Q S + F+V
Sbjct: 56   ISADKIINLASKR-LYFGSSYLKAWEMKTDIV-QLRAYVDHMDGITLNFGCQISDDKFAV 113

Query: 1142 LWKAADVTVKFGNKLKNMQLFLSHESVEYRLQLYHDNIWQIVLYNSGSRGRAGKVLLIQL 963
            L  + +V++KFG  LK    FLS  S +Y+LQL ++NIWQ+VL+     G+  + LLIQL
Sbjct: 114  LG-STEVSIKFGIGLKKFFFFLSSGSADYKLQLSYENIWQVVLHRP--YGQNAQFLLIQL 170

Query: 962  YGAPRIYKKLDDCAHSYFKQTPDDQWVRTTDFTPSSSIGQSSGICLHLPPGTTLPNFADN 783
            +GAPRIYK+L++  +S+FK+TPDDQWVRTTDF PS  IG SS +CL    G  LPNF ++
Sbjct: 171  FGAPRIYKRLENSCYSFFKETPDDQWVRTTDFAPSW-IGLSSSLCLQFRRGVHLPNFQES 229

Query: 782  FVNYEVSKSPFSLENGVPFCGNQD--LVPIIQPPRGLELPYRLLFKVCCLVQNGCLPGPK 609
            F +Y   ++  +L+ G  F  +Q   LVP +QPP G+ +PY++LFK+  LVQ+GC+PGP 
Sbjct: 230  FFHYAERENNITLQTGFTFFVSQKSALVPNVQPPEGIAIPYKILFKISSLVQHGCIPGPA 289

Query: 608  LDKNFYKLINPEKFDIAYLEQVLEKIYYMKECCYDPHSWLIEQHQNYRTFKKPRPPPA-- 435
            L+ NF++L++P++ ++A +EQ LEK+YY+KECCYDP  WL EQ+  Y   ++P   P+  
Sbjct: 290  LNVNFFRLVDPQRRNVACIEQALEKLYYLKECCYDPVRWLTEQYDGYLKGRQPPKSPSIN 349

Query: 434  -DDDLVHIHRMQVTPTKVYFYGPEVNVSNRVLRQFRDHIDNFLRVSFVEEDWSKMYSADL 258
             DD LV++ R+ VTP KVYF GPEVNVSNRVLR + + IDNFLRVSFV+E+W K+YS DL
Sbjct: 350  LDDGLVYVRRVLVTPCKVYFCGPEVNVSNRVLRNYSEDIDNFLRVSFVDEEWEKLYSTDL 409

Query: 257  SPRGAGDDESRRTKLYERTLSTLRNGIRIGSKKFEFLAFSSSQLRENSLWMFAPTIDLNA 78
             P+ A      RT +Y R LSTL+ G  IG KKFEFLAFSSSQLR+NS+WMFA    L A
Sbjct: 410  LPK-ASTGNGIRTNIYVRILSTLQKGFVIGDKKFEFLAFSSSQLRDNSVWMFASRPGLTA 468

Query: 77   DDIRQWMGDFSSIRNVAKYAARLGQ 3
             DIR WMGDFS I+NVAKYAARLGQ
Sbjct: 469  IDIRTWMGDFSQIKNVAKYAARLGQ 493


>gb|ABV24845.1| RNA-dependent RNA polymerase [Nicotiana glutinosa]
            gi|209420668|gb|ACI46982.1| RNA-dependent RNA polymerase
            [Nicotiana glutinosa]
          Length = 1117

 Score =  518 bits (1334), Expect = e-144
 Identities = 278/506 (54%), Positives = 353/506 (69%), Gaps = 6/506 (1%)
 Frame = -2

Query: 1502 MGKTIQVSGFPRLLSAENVKMFLEQRMELLGRGTGTIFAIQVKSAKQGVRAYARVQFTDV 1323
            MGKTIQV GFP LLSAE VK FLE        G GT++A++VK +K G RA+A+VQF + 
Sbjct: 1    MGKTIQVFGFPYLLSAEAVKTFLENHT-----GNGTVYALEVKQSKGGRRAFAKVQFANN 55

Query: 1322 EYAAMFKSLANLGILMYGTSYLKVWDQDMDIVPNPRTYEDEMEGVTLNVGVQTSKENFSV 1143
            + A +   LA+ G L YG SYLK W+    IV  PRTY   M+GVTLN G Q S + F+V
Sbjct: 56   KSAEIIIDLASKG-LYYGPSYLKAWEMKTYIV-QPRTYVQHMDGVTLNFGCQISDKKFAV 113

Query: 1142 LWKAADVTVKFGNKLKNMQLFLSHESVEYRLQLYHDNIWQIVLYNSGSRGRAGKVLLIQL 963
            L     V++KFG  LK +  FLS+ S +Y+LQL ++NIWQ+VL+     G+  + LL+QL
Sbjct: 114  LGSKV-VSIKFGIGLKKIYFFLSYGSTDYKLQLSYENIWQVVLHRP--YGQKAQFLLLQL 170

Query: 962  YGAPRIYKKLDDCAHSYFKQTPDDQWVRTTDFTPSSSIGQSSGICLHLPPGTTLPNFADN 783
             GAPRIYK+L+D  +S+FK+TPDDQWVRTTDFTPS  IG SS +CL    G  LPNF+++
Sbjct: 171  SGAPRIYKRLEDSCYSFFKETPDDQWVRTTDFTPSW-IGLSSSLCLEFHNGVRLPNFSES 229

Query: 782  FVNYEVSKSPFSLENGVPFCGNQD---LVPIIQPPRGLELPYRLLFKVCCLVQNGCLPGP 612
            F  Y+ S +   L+ G  F  +Q    LVPI+  P G+ELPY++LFK+  L+Q+GC PG 
Sbjct: 230  FFYYKESANQVILQTGFTFSFSQKKLALVPIVHLPEGIELPYKILFKISSLIQHGCFPGL 289

Query: 611  KLDKNFYKLINPEKFDIAYLEQVLEKIYYMKECCYDPHSWLIEQHQNYRTFKK-PRPPPA 435
             L+ NF++L++P + +IA +E  LEK+YY+KECCYDP  WL EQ+  Y   ++ P+ P  
Sbjct: 290  ALNFNFFQLVDPRRRNIACIEHALEKLYYLKECCYDPVRWLTEQYDEYLKRRQLPKSPSI 349

Query: 434  --DDDLVHIHRMQVTPTKVYFYGPEVNVSNRVLRQFRDHIDNFLRVSFVEEDWSKMYSAD 261
              DD LV++ R+ VTP KVYF GPEVNVSNRVLR + + IDNFLRVSFV+E+W K++S D
Sbjct: 350  TLDDGLVYVRRVLVTPCKVYFCGPEVNVSNRVLRNYSEDIDNFLRVSFVDEEWEKIHSTD 409

Query: 260  LSPRGAGDDESRRTKLYERTLSTLRNGIRIGSKKFEFLAFSSSQLRENSLWMFAPTIDLN 81
            L PR A      RT +Y R LSTLRNG  IG KKFEFLAFSSSQLR+NS+WMFA    L 
Sbjct: 410  LLPR-ASTGNGVRTDIYLRILSTLRNGFVIGDKKFEFLAFSSSQLRDNSVWMFASRPGLT 468

Query: 80   ADDIRQWMGDFSSIRNVAKYAARLGQ 3
            A+DIR WMG F  IRNVAKYAARLGQ
Sbjct: 469  ANDIRTWMGGFQQIRNVAKYAARLGQ 494


>gb|ABL68088.1| putative RNA-directed RNA polymerase 1 [Nicotiana attenuata]
          Length = 1044

 Score =  517 bits (1331), Expect = e-144
 Identities = 278/504 (55%), Positives = 354/504 (70%), Gaps = 4/504 (0%)
 Frame = -2

Query: 1502 MGKTIQVSGFPRLLSAENVKMFLEQRMELLGRGTGTIFAIQVKSAKQGVRAYARVQFTDV 1323
            MGKTIQV GFP LLSAE VK FLE        G GT++A++VK +K G RA+A+VQF + 
Sbjct: 1    MGKTIQVFGFPYLLSAEAVKTFLENHT-----GNGTVYALEVKQSKGGRRAFAKVQFANN 55

Query: 1322 EYAAMFKSLANLGILMYGTSYLKVWDQDMDIVPNPRTYEDEMEGVTLNVGVQTSKENFSV 1143
            + A +   LA+ G L YG SYL+ W+   DIV  PRTY   M+GVTLN G Q S + F+V
Sbjct: 56   KSAELIMDLASEG-LYYGPSYLQAWEMKTDIV-QPRTYVQHMDGVTLNFGCQISDKKFAV 113

Query: 1142 LWKAADVTVKFGNKLKNMQLFLSHESVEYRLQLYHDNIWQIVLYNSGSRGRAGKVLLIQL 963
            L  + DV++KFG  LK +  FLS+ S +Y+LQL ++NIWQ+VL+     G+  + LL+QL
Sbjct: 114  LG-SKDVSIKFGIGLKKIYFFLSYGSTDYKLQLSYENIWQVVLHCP--YGQKAQFLLLQL 170

Query: 962  YGAPRIYKKLDDCAHSYFKQTPDDQWVRTTDFTPSSSIGQSSGICLHLPPGTTLPNFADN 783
            +GAPRI+K+L+D  +S+FK+TPDDQWVRTTDFTPS  IG SS +CL    G  LPNF+ +
Sbjct: 171  FGAPRIHKRLEDSCNSFFKETPDDQWVRTTDFTPSW-IGLSSSLCLEFHNGVRLPNFSGS 229

Query: 782  FVNYEVS-KSPFSLENGVPFCGNQDLVPIIQPPRGLELPYRLLFKVCCLVQNGCLPGPKL 606
            F  Y+ S  S F+      F     LVPI+  P G+ELPY++LFK+  L+Q+GC PG  L
Sbjct: 230  FFYYKESGPSYFTDWFTFSFVQKLSLVPIVHLPEGVELPYKILFKISSLIQHGCFPGLAL 289

Query: 605  DKNFYKLINPEKFDIAYLEQVLEKIYYMKECCYDPHSWLIEQHQNYRTFKK-PRPPPA-- 435
            + NF++L++P + +IA +E  LEK+YY+KECCYDP  WL EQ+  Y   ++ P+ P    
Sbjct: 290  NFNFFQLVDPRRRNIACIEHALEKLYYLKECCYDPVRWLTEQYDEYLKHRQLPKSPSITL 349

Query: 434  DDDLVHIHRMQVTPTKVYFYGPEVNVSNRVLRQFRDHIDNFLRVSFVEEDWSKMYSADLS 255
            DD LV++ R+ VTP KVYF GPEVNVSNRVLR + + IDNFLRVSFV+E+W K++S DL 
Sbjct: 350  DDGLVYVRRVLVTPCKVYFCGPEVNVSNRVLRNYSEDIDNFLRVSFVDEEWEKIHSTDLL 409

Query: 254  PRGAGDDESRRTKLYERTLSTLRNGIRIGSKKFEFLAFSSSQLRENSLWMFAPTIDLNAD 75
            PR A      RT +Y R LSTLRNG  IG KKFEFLAFSSSQLR+NS+WMFA    L A+
Sbjct: 410  PR-ASTGNGIRTDIYLRILSTLRNGFVIGDKKFEFLAFSSSQLRDNSVWMFASRPGLTAN 468

Query: 74   DIRQWMGDFSSIRNVAKYAARLGQ 3
            DIR WMGDF  IRNVAKYAARLGQ
Sbjct: 469  DIRTWMGDFRQIRNVAKYAARLGQ 492


>gb|EXB53859.1| RNA-dependent RNA polymerase 1 [Morus notabilis]
          Length = 1133

 Score =  516 bits (1330), Expect = e-144
 Identities = 274/513 (53%), Positives = 354/513 (69%), Gaps = 13/513 (2%)
 Frame = -2

Query: 1502 MGKTIQVSGFPRLLSAENVKMFLEQRMELLGRGTGTIFAIQVKSAKQG-VRAYARVQFTD 1326
            MGKTIQ+SGFP  +SAE+VK FLE        G GT++AI+++  K G  R+YA VQF  
Sbjct: 1    MGKTIQLSGFPSHVSAESVKEFLEGHT-----GRGTVYAIKIRPTKNGGSRSYAIVQFMT 55

Query: 1325 VEYAAMFKSLANLGILMYGTSYLKVWDQDMDIVPNPRTYEDEMEGVTLNVGVQTSKENFS 1146
            VE A +   LAN   L YG SYL     + DIVP PR     ++ VTL+ G Q SKE FS
Sbjct: 56   VETAELIIRLANPR-LWYGRSYLLARVMERDIVPKPRATLYSLQNVTLHFGCQISKEKFS 114

Query: 1145 VLWKAADVTVKFGNKLKNMQLFLSHESVEYRLQLYHDNIWQIVLYNSGSRGRAGKVLLIQ 966
             LW+  +V+V FG  L+ +  +L++  VEYRLQL ++N+WQI L+    RG+  K LLIQ
Sbjct: 115  FLWRVGNVSVDFGLGLRRLNFYLTYGPVEYRLQLLYENVWQIELHRP--RGQTAKYLLIQ 172

Query: 965  LYGAPRIYKK--------LDDCAHSYFKQTPDDQWVRTTDFTPSSSIGQSSGICLHLPPG 810
            L GAPR+Y+K        L++   +YFK TPDDQWVR TDFT S  IG SS + L LP G
Sbjct: 173  LLGAPRVYEKEVRISFDILENPLFNYFKDTPDDQWVRATDFTESCCIGHSSALYLELPYG 232

Query: 809  TTLPNFADNFVNYEVSKSPFSLENGVPFCGNQDLVPIIQPPRGLELPYRLLFKVCCLVQN 630
              LP+  +NFV Y+ S+  F LE+G  F  N DLVPI+ PP G+ LP+  +FK+  L+QN
Sbjct: 233  VDLPDLRENFVYYKESEERFILESGSSFSRNLDLVPIVGPPSGINLPFETVFKINMLLQN 292

Query: 629  GCLPGPKLDKNFYKLINPEKF-DIAYLEQVLEKIYYMKECCYDPHSWLIEQHQNYRTFKK 453
            GCL GP LD +FY+L++P++  ++  +   LEK++ +KEC Y+P +WL EQ++ Y T  +
Sbjct: 293  GCLSGPTLDVDFYRLVDPQRIRNVDCINYALEKLFNLKECPYEPAAWLNEQYRKYLTAPR 352

Query: 452  PRPPPA---DDDLVHIHRMQVTPTKVYFYGPEVNVSNRVLRQFRDHIDNFLRVSFVEEDW 282
            P  PPA   D  LV++ R+QVTP+KVYF GPE+NVSNRVLR++ D+ID FLRVSFV+E+ 
Sbjct: 353  PPKPPAIALDSGLVYVRRVQVTPSKVYFCGPEINVSNRVLREYIDYIDYFLRVSFVDEEL 412

Query: 281  SKMYSADLSPRGAGDDESRRTKLYERTLSTLRNGIRIGSKKFEFLAFSSSQLRENSLWMF 102
             K++S DLSPR +  +E RRT +Y R LS LRNGI IG +KFEFLAFSSSQLR+NSLWMF
Sbjct: 413  EKLFSTDLSPRTSNANEDRRTGIYRRILSVLRNGIEIGDRKFEFLAFSSSQLRDNSLWMF 472

Query: 101  APTIDLNADDIRQWMGDFSSIRNVAKYAARLGQ 3
            A     +AD IRQW+GDF SIRNVAKYAARLGQ
Sbjct: 473  AAVDGHSADTIRQWIGDFRSIRNVAKYAARLGQ 505


>ref|XP_002281315.1| PREDICTED: RNA-dependent RNA polymerase 1-like [Vitis vinifera]
          Length = 1109

 Score =  515 bits (1327), Expect = e-143
 Identities = 276/504 (54%), Positives = 352/504 (69%), Gaps = 4/504 (0%)
 Frame = -2

Query: 1502 MGKTIQVSGFPRLLSAENVKMFLEQRMELLGRGTGTIFAIQVKSAKQGVR-AYARVQFTD 1326
            MGKTIQV G P  +SA  +K FLE+       G GTI A+++K  K GV   +A+VQFT 
Sbjct: 1    MGKTIQVYGVPSNVSANEIKEFLEKYT-----GEGTIEALEIKQPKSGVSMTHAKVQFTS 55

Query: 1325 VEYAAMFKSLANLGILMYGTSYLKVWDQDMDIVPNPRTYEDEMEGVTLNVGVQTSKENFS 1146
            +  A +  SLA    L YG +YLK  + D+DI+P PRT+   M+ +TL+ G Q S E F 
Sbjct: 56   LRLAELIISLAKQ--LWYGGNYLKAREMDLDIIPKPRTFLHSMDRITLHFGYQMSNERFC 113

Query: 1145 VLWKAADVTVKFGNKLKNMQLFLSHESVEYRLQLYHDNIWQIVLYNSGSRGRAGKVLLIQ 966
            VLWKA +V+VKFG  L+    FLSH S EY+L+L  +NIWQI L     RG+  K LLIQ
Sbjct: 114  VLWKAINVSVKFGFGLRKFYFFLSHGSEEYKLELSCENIWQIQLREP--RGQNTKFLLIQ 171

Query: 965  LYGAPRIYKKLDDCAHSYFKQTPDDQWVRTTDFTPSSSIGQSSGICLHLPPGTTLPNFAD 786
            L  AP+IY+K D  A SYFK+TPDDQWVR  DFTPS SIGQSS +CL LP G+ LPNF +
Sbjct: 172  LLDAPQIYEK-DVSALSYFKETPDDQWVREIDFTPSCSIGQSSALCLELPHGSQLPNFCE 230

Query: 785  NFVNYEVSKSPFSLENGVPFCGNQDLVPIIQPPRGLELPYRLLFKVCCLVQNGCLPGPKL 606
            NF  Y+ +   F LE+G  F GN  LVPI+ PP+G  LP+++LFK+  LVQNGCL GP L
Sbjct: 231  NFARYKENDRKFILESGASFSGNLHLVPIVGPPQGSNLPFKILFKINTLVQNGCLSGPTL 290

Query: 605  DKNFYKLINPEKFDIAYLEQVLEKIYYMKECCYDPHSWLIEQHQNYRTFKKPRPPPA--- 435
            D NF++ ++P++ +I+++E  LEK+YY++ECCY+P  WL EQ++ Y + K+    PA   
Sbjct: 291  DTNFFRWVDPQRINISFIEHALEKLYYLEECCYEPVRWLHEQYRTYIS-KQVAGSPAISL 349

Query: 434  DDDLVHIHRMQVTPTKVYFYGPEVNVSNRVLRQFRDHIDNFLRVSFVEEDWSKMYSADLS 255
            D  LV++ R+Q+TP KVYF GPEVNVSNRVLR + + IDNFLRVSF++E+  K++S  +S
Sbjct: 350  DTGLVYVRRVQITPCKVYFCGPEVNVSNRVLRNYPEDIDNFLRVSFLDENSEKIHSTVIS 409

Query: 254  PRGAGDDESRRTKLYERTLSTLRNGIRIGSKKFEFLAFSSSQLRENSLWMFAPTIDLNAD 75
            PR +  +E RRT +Y R LS L+NGI IG KKF+FLA SSSQLR+NS WMFA    L A 
Sbjct: 410  PRMS--NEGRRTGVYRRILSILQNGIVIGDKKFDFLAVSSSQLRDNSAWMFASRPGLTAA 467

Query: 74   DIRQWMGDFSSIRNVAKYAARLGQ 3
            DIR  MGDFS IRNVAKYAARLGQ
Sbjct: 468  DIRSRMGDFSQIRNVAKYAARLGQ 491


>gb|ABO93006.1| putative RNA-dependent RNA-polymerase [Solanum tuberosum]
          Length = 1065

 Score =  514 bits (1325), Expect = e-143
 Identities = 270/505 (53%), Positives = 355/505 (70%), Gaps = 5/505 (0%)
 Frame = -2

Query: 1502 MGKTIQVSGFPRLLSAENVKMFLEQRMELLGRGTGTIFAIQVKSAKQGVRAYARVQFTDV 1323
            MGKTIQV GFP LL AE VK FLE+       G GT+ A+ VK +K G RA+A+VQF D 
Sbjct: 1    MGKTIQVYGFPDLLPAEVVKSFLEKHT-----GYGTVCALDVKQSKGGSRAFAKVQFVDN 55

Query: 1322 EYAAMFKSLANLGILMYGTSYLKVWDQDMDIVPNPRTYEDEMEGVTLNVGVQTSKENFSV 1143
              A    +LA+   L +G+SYLK W+   DIV     Y D M+G+TLN G Q S + F+V
Sbjct: 56   ISADKIINLASKR-LYFGSSYLKAWEMKTDIVQV--AYVDHMDGITLNFGCQISDDKFAV 112

Query: 1142 LWKAADVTVKFGNKLKNMQLFLSHESVEYRLQLYHDNIWQIVLYNSGSRGRAGKVLLIQL 963
            L  + +V++KFG  LK +  FLS  S +Y+LQL ++NIWQ+VL+     G+  + LLIQL
Sbjct: 113  LG-STEVSIKFGIGLKKIYFFLSRGSADYKLQLSYENIWQVVLHRP--YGQNAQFLLIQL 169

Query: 962  YGAPRIYKKLDDCAHSYFKQTPDDQWVRTTDFTPSSSIGQSSGICLHLPPGTTLPNFADN 783
            +GAPRIYK+L++  +S+FK+TPDDQWVRTTDF PS  IG SS +CL    G  LPNF ++
Sbjct: 170  FGAPRIYKRLENSCYSFFKETPDDQWVRTTDFAPSW-IGLSSSLCLQFRRGVHLPNFQES 228

Query: 782  FVNYEVSKSPFSLENGVPFCGNQD--LVPIIQPPRGLELPYRLLFKVCCLVQNGCLPGPK 609
            F +Y   ++  +L+ G  F  +Q   LVP +QPP G+ +PY++LFK+  LVQ+GC+PGP 
Sbjct: 229  FFHYAERENNITLQTGFTFFISQKSALVPNVQPPEGIAIPYKILFKISSLVQHGCIPGPS 288

Query: 608  LDKNFYKLINPEKFDIAYLEQVLEKIYYMKECCYDPHSWLIEQHQNYRTFKKPRPPPA-- 435
            L+  F++L++P++ ++A +EQ LEK+YY+KECCYDP  WL EQ+  Y   ++P   P+  
Sbjct: 289  LNVYFFRLVDPQRRNVACIEQALEKLYYLKECCYDPVRWLTEQYDGYLKGRQPPKSPSIT 348

Query: 434  -DDDLVHIHRMQVTPTKVYFYGPEVNVSNRVLRQFRDHIDNFLRVSFVEEDWSKMYSADL 258
             DD LV++ R+ VTP KVYF GPEVNVSNRVLR + + IDNFLRVSFV+E+W K+YS +L
Sbjct: 349  LDDGLVYVRRVLVTPCKVYFCGPEVNVSNRVLRNYSEDIDNFLRVSFVDEEWEKLYSTEL 408

Query: 257  SPRGAGDDESRRTKLYERTLSTLRNGIRIGSKKFEFLAFSSSQLRENSLWMFAPTIDLNA 78
             P+ A      RT +YER LST++ G  IG KKFEFLAFSSSQLR+NS+WMFA    L A
Sbjct: 409  LPK-ASTGNGIRTNIYERILSTMQKGFVIGDKKFEFLAFSSSQLRDNSVWMFASRPGLTA 467

Query: 77   DDIRQWMGDFSSIRNVAKYAARLGQ 3
            +DIR WMGDFS I+NVAKYAARLGQ
Sbjct: 468  NDIRTWMGDFSQIKNVAKYAARLGQ 492


>ref|XP_006469265.1| PREDICTED: RNA-dependent RNA polymerase 1-like [Citrus sinensis]
          Length = 1132

 Score =  514 bits (1323), Expect = e-143
 Identities = 269/515 (52%), Positives = 353/515 (68%), Gaps = 15/515 (2%)
 Frame = -2

Query: 1502 MGKTIQVSGFPRLLSAENVKMFLEQRMELLGRGTGTIFAIQVKSAKQGV-RAYARVQFTD 1326
            MGKTIQV GFP  ++AE VK FLE +      G GT++A+++++ K+GV R YA VQFT 
Sbjct: 1    MGKTIQVFGFPAGVTAEAVKDFLESKT-----GGGTVYALKLRTPKKGVGRLYAIVQFTT 55

Query: 1325 VEYAAMFKSLA-NLGILMYGTSYLKVWDQDMDIVPNPRTYEDEMEGVTLNVGVQTSKENF 1149
             E A    SLA     L YG SYL     + D VP PRT+   ME + L+ G + S E F
Sbjct: 56   KEAADTIISLACRTEKLWYGRSYLNARRMEQDTVPRPRTFMHTMEHIELHFGCKISNEKF 115

Query: 1148 SVLWKAADVTVKFGNKLKNMQLFLSHESVEYRLQLYHDNIWQIVLYNSGSRGRAGKVLLI 969
            +VLW+  +VTV FG  ++ +   LSH   EYRL+L ++NIW+I L+    R +  K LLI
Sbjct: 116  AVLWRGVNVTVNFGFGMRKINFLLSHLGEEYRLELDYENIWEIELHCP--RWQMTKYLLI 173

Query: 968  QLYGAPRIYKK--------LDDCAHSYFKQTPDDQWVRTTDFTPSSSIGQSSGICLHLPP 813
            QL GAPRI++K         +    ++FK+ PDDQWVRTTDFTPS+ IGQS+G+C+ LP 
Sbjct: 174  QLLGAPRIFQKGIRSPDLLYESPVFNFFKEVPDDQWVRTTDFTPSNFIGQSTGLCMELPY 233

Query: 812  GTTLPNFADNFVNYEVSKSPFSLENGVPFCGNQDLVPIIQPPRGLELPYRLLFKVCCLVQ 633
               LP+F +NF  Y+ S+  F LE G  +  + DLVPI+ PP G+ LPY +LFK+  LVQ
Sbjct: 234  RLELPDFKENFAYYKESEDRFVLETGSAYSRSLDLVPIVGPPDGIALPYEILFKINLLVQ 293

Query: 632  NGCLPGPKLDKNFYKLINPEK--FDIAYLEQVLEKIYYMKECCYDPHSWLIEQHQNYRTF 459
            NGC+ GP LD NFY+L++P +    I+ +E  L+K+Y++KECCY+P  WL +Q++ Y T 
Sbjct: 294  NGCVAGPLLDSNFYRLVDPYRAPVSISCIEHALDKLYHLKECCYEPSRWLTDQYRKYMTS 353

Query: 458  KKPRPPPA---DDDLVHIHRMQVTPTKVYFYGPEVNVSNRVLRQFRDHIDNFLRVSFVEE 288
            +     PA   DD LV++HR+QVTP++VYF GPE+NVSNRVLR FR  IDNFLR+SF++E
Sbjct: 354  RSKPSSPAISLDDGLVYVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDE 413

Query: 287  DWSKMYSADLSPRGAGDDESRRTKLYERTLSTLRNGIRIGSKKFEFLAFSSSQLRENSLW 108
            D  K++S DLSPRG+   +  RT++Y R LSTLRNGI IG +KFEFLAFSSSQLRE+S W
Sbjct: 414  DLDKIHSTDLSPRGSSATDITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSAW 473

Query: 107  MFAPTIDLNADDIRQWMGDFSSIRNVAKYAARLGQ 3
            MFA    L A +IR+WMG+F  IRNVAKYAARLGQ
Sbjct: 474  MFASRYGLTAAEIREWMGNFREIRNVAKYAARLGQ 508


>ref|XP_002311536.1| RNA-directed RNA Polymerase family protein [Populus trichocarpa]
            gi|222851356|gb|EEE88903.1| RNA-directed RNA Polymerase
            family protein [Populus trichocarpa]
          Length = 1133

 Score =  513 bits (1322), Expect = e-143
 Identities = 268/512 (52%), Positives = 342/512 (66%), Gaps = 12/512 (2%)
 Frame = -2

Query: 1502 MGKTIQVSGFPRLLSAENVKMFLEQRMELLGRGTGTIFAIQVKSAKQG-VRAYARVQFTD 1326
            M KT++VSGFP   +A  V++FLE        G GT+ A++++  + G  R YA VQFT 
Sbjct: 1    MSKTVKVSGFPSSTTAGAVQVFLESHT-----GGGTVEALKIREIRTGGARKYAIVQFTT 55

Query: 1325 VEYAAMFKSLANLGILMYGTSYLKVWDQDMDIVPNPRTYEDEMEGVTLNVGVQTSKENFS 1146
               A    SLAN   L YG SYL     D DI+P PR++   ME VTL+ G QTSKE FS
Sbjct: 56   TRAAEQIISLANPR-LWYGHSYLNARPMDRDIIPQPRSFLHTMESVTLHFGYQTSKEKFS 114

Query: 1145 VLWKAADVTVKFGNKLKNMQLFLSHESVEYRLQLYHDNIWQIVLYNSGSRGRAGKVLLIQ 966
             +W   +V+V FG  ++ +  FLSH   EY+L L  +NIWQI L+    RG+  K LLIQ
Sbjct: 115  AVWSGNNVSVNFGLGMRKLHFFLSHNLAEYKLNLLFENIWQIELHRP--RGQTVKYLLIQ 172

Query: 965  LYGAPRIYKK--------LDDCAHSYFKQTPDDQWVRTTDFTPSSSIGQSSGICLHLPPG 810
            LYGAPRIY++         +D   +YF+  PD+QWVRTTDFTPS  IG SS +CL LP  
Sbjct: 173  LYGAPRIYERDVPSSSNVFEDPLLNYFRDVPDEQWVRTTDFTPSCGIGHSSSLCLELPNH 232

Query: 809  TTLPNFADNFVNYEVSKSPFSLENGVPFCGNQDLVPIIQPPRGLELPYRLLFKVCCLVQN 630
              LPNF +NF  Y+ ++  F LE+G+ F  N DLVPI+ P  G+ LPY +LF+V  LVQN
Sbjct: 233  LQLPNFNENFFYYKENEGTFVLESGLTFSRNPDLVPIVGPSSGVNLPYNILFRVNLLVQN 292

Query: 629  GCLPGPKLDKNFYKLINPEKFDIAYLEQVLEKIYYMKECCYDPHSWLIEQHQNYRTFKKP 450
            GCL G  LD  FY+L++P +  +  +E  LEK+Y++KECCY+P  W  EQ++ Y T   P
Sbjct: 293  GCLAGSMLDDIFYRLVDPNRMPVRCIEYALEKLYHLKECCYEPSKWFNEQYKKYLTSGNP 352

Query: 449  RPPPA---DDDLVHIHRMQVTPTKVYFYGPEVNVSNRVLRQFRDHIDNFLRVSFVEEDWS 279
               P    D  LV+++++Q+TP KV+F GPEVNVSNRVLRQ+R+ IDNFLRVSFV+E+  
Sbjct: 353  PRSPVLSLDAGLVYVYKVQITPCKVFFCGPEVNVSNRVLRQYREDIDNFLRVSFVDEELE 412

Query: 278  KMYSADLSPRGAGDDESRRTKLYERTLSTLRNGIRIGSKKFEFLAFSSSQLRENSLWMFA 99
            K++S D+SPR +  +E RRT +Y R LSTL+NGI IG KKFEFLAFSSSQLRENS WMFA
Sbjct: 413  KIHSTDVSPRTSSRNELRRTAIYNRILSTLQNGIVIGDKKFEFLAFSSSQLRENSCWMFA 472

Query: 98   PTIDLNADDIRQWMGDFSSIRNVAKYAARLGQ 3
              + L A DIR WMG F  IRNVA+YAARLGQ
Sbjct: 473  SRLGLTAADIRAWMGSFHKIRNVARYAARLGQ 504


>ref|XP_006366109.1| PREDICTED: RNA-dependent RNA polymerase 1-like isoform X1 [Solanum
            tuberosum] gi|565401229|ref|XP_006366110.1| PREDICTED:
            RNA-dependent RNA polymerase 1-like isoform X2 [Solanum
            tuberosum]
          Length = 1115

 Score =  512 bits (1319), Expect = e-142
 Identities = 272/505 (53%), Positives = 355/505 (70%), Gaps = 5/505 (0%)
 Frame = -2

Query: 1502 MGKTIQVSGFPRLLSAENVKMFLEQRMELLGRGTGTIFAIQVKSAKQGVRAYARVQFTDV 1323
            MGKTIQV GFP LLSAE VK FLE+       G GT+ A++VK +K G RA+A+VQF D 
Sbjct: 1    MGKTIQVYGFPDLLSAEVVKSFLEKHT-----GYGTVCALEVKQSKGGSRAFAKVQFVDN 55

Query: 1322 EYAAMFKSLANLGILMYGTSYLKVWDQDMDIVPNPRTYEDEMEGVTLNVGVQTSKENFSV 1143
              A    +LA+   L +G+SYLK  + + D+V     Y D M+G+TLN G Q S + F+V
Sbjct: 56   ISADKIINLASKR-LYFGSSYLKAREMETDLV-QLWEYVDHMDGITLNFGCQISDDKFAV 113

Query: 1142 LWKAADVTVKFGNKLKNMQLFLSHESVEYRLQLYHDNIWQIVLYNSGSRGRAGKVLLIQL 963
            L  + +V++KFG  LK    FLS  S +Y+LQL ++NIWQ+VL+     G+  + LLIQL
Sbjct: 114  LG-STEVSIKFGIGLKKFFFFLSSGSADYKLQLSYENIWQVVLHRP--YGQNAQFLLIQL 170

Query: 962  YGAPRIYKKLDDCAHSYFKQTPDDQWVRTTDFTPSSSIGQSSGICLHLPPGTTLPNFADN 783
            +GAPRIYK+L++  +S+FK+TPDDQWVRTTDF PS  IG SS +CL    G  LPNF ++
Sbjct: 171  FGAPRIYKRLENSCYSFFKETPDDQWVRTTDFAPSW-IGLSSSLCLQFRRGVHLPNFQES 229

Query: 782  FVNYEVSKSPFSLENGVPFCGNQD--LVPIIQPPRGLELPYRLLFKVCCLVQNGCLPGPK 609
            F +Y   ++  +L+ G  F  +Q   LVP +QPP G+ +PY++LFK+  LVQ+GC+PGP 
Sbjct: 230  FFHYAERENNITLQTGFTFFVSQKSALVPNVQPPEGIAIPYKILFKISSLVQHGCIPGPA 289

Query: 608  LDKNFYKLINPEKFDIAYLEQVLEKIYYMKECCYDPHSWLIEQHQNYRTFKKPRPPPA-- 435
            L+  F++L++P++ ++A +EQ LEK+YY+KECCYDP  WL EQ+  Y   ++P   P+  
Sbjct: 290  LNVYFFRLVDPQRRNVACIEQALEKLYYLKECCYDPVRWLTEQYDGYLKGRQPPKSPSIN 349

Query: 434  -DDDLVHIHRMQVTPTKVYFYGPEVNVSNRVLRQFRDHIDNFLRVSFVEEDWSKMYSADL 258
             DD LV++ R+ VTP KVYF GPEVNVSNRVLR + + IDNFLRVSFV+E+W K+YS DL
Sbjct: 350  LDDGLVYVRRVLVTPCKVYFCGPEVNVSNRVLRNYSEDIDNFLRVSFVDEEWEKLYSTDL 409

Query: 257  SPRGAGDDESRRTKLYERTLSTLRNGIRIGSKKFEFLAFSSSQLRENSLWMFAPTIDLNA 78
             P+ A      RT +YER LSTLR G  IG KKFEFLAFSSSQLR+NS+WMFA    L A
Sbjct: 410  LPK-ASTGNGIRTNIYERILSTLRKGFVIGDKKFEFLAFSSSQLRDNSVWMFASRPGLTA 468

Query: 77   DDIRQWMGDFSSIRNVAKYAARLGQ 3
             DIR WMGDFS I+NVAKYAARLGQ
Sbjct: 469  IDIRTWMGDFSQIKNVAKYAARLGQ 493


>ref|XP_002284914.1| PREDICTED: RNA-dependent RNA polymerase 1 [Vitis vinifera]
          Length = 1121

 Score =  511 bits (1316), Expect = e-142
 Identities = 269/505 (53%), Positives = 349/505 (69%), Gaps = 5/505 (0%)
 Frame = -2

Query: 1502 MGKTIQVSGFPRLLSAENVKMFLEQRMELLGRGTGTIFAIQVKSAKQGVR-AYARVQFTD 1326
            M KTIQV GFP ++SA+ +K FLE+       G GTI A+++K  + G    +A+VQFT 
Sbjct: 1    MSKTIQVYGFPSIVSADEIKEFLEKYT-----GEGTIEALEIKQPRSGASMTHAKVQFTS 55

Query: 1325 VEYAAMFKSLANLGILMYGTSYLKVWDQDMDIVPNPRTYEDEMEGVTLNVGVQTSKENFS 1146
             E A    +L    +  YG +YLK  + D+DI+P PR +   M+ +TL+ G Q S E F 
Sbjct: 56   FELAEFIITLCKKKV-WYGRNYLKAREMDLDIIPKPRAFLHSMDRITLHFGCQMSDERFC 114

Query: 1145 VLWKAADVTVKFGNKLKNMQLFLSHESVEYRLQLYHDNIWQIVLYNSGSRGRAGKVLLIQ 966
            VLWKA +V+VKFG+ L+    FLSH S EY+L+L ++NIWQI L +   RG+  K LLIQ
Sbjct: 115  VLWKAINVSVKFGSGLRKFYFFLSHGSEEYKLELSYENIWQIQLQHP--RGQITKFLLIQ 172

Query: 965  LYGAPRIYKKLDDCAHSYFKQTPDDQWVRTTDFTPSSSIGQSSGICLHLPPGTTLPNFAD 786
            L GAP+IY+K       YFK+ PDDQWVR  DFTPS  IGQS  +CL LP G+ LPNF +
Sbjct: 173  LLGAPQIYEKDVPVLSYYFKEAPDDQWVREIDFTPSCFIGQSFALCLELPYGSQLPNFRE 232

Query: 785  NFVNYEVSKSPFSLENGVPFCGNQDLVPIIQPPRGLELPYRLLFKVCCLVQNGCLPGPKL 606
            NF  Y+ +   F LE+G  +  N  LVPI+ PP+G  LP+++LFK+  LVQNGCL GP L
Sbjct: 233  NFAYYKENDGKFILESGSSYSHNLHLVPILGPPQGSSLPFQILFKINTLVQNGCLSGPTL 292

Query: 605  DKNFYKLINPEKFDIAYLEQVLEKIYYMKECCYDPHSWLIEQHQNYRTFKKP-RPPPA-- 435
            D +F++L++PE+F I+++E  LEK+Y++KECCY+P  WL EQ++ Y   KKP    PA  
Sbjct: 293  DTSFFRLVDPERFPISFIEHALEKLYHLKECCYEPVRWLSEQYRTY--VKKPVAGSPAIS 350

Query: 434  -DDDLVHIHRMQVTPTKVYFYGPEVNVSNRVLRQFRDHIDNFLRVSFVEEDWSKMYSADL 258
             D  LV++ R+Q+TP KVYF GPEVNVSNRVLR + + IDNFLRVSF++E+  K++S  +
Sbjct: 351  LDTGLVYVRRVQITPCKVYFCGPEVNVSNRVLRNYPEDIDNFLRVSFLDENLEKIHSTVI 410

Query: 257  SPRGAGDDESRRTKLYERTLSTLRNGIRIGSKKFEFLAFSSSQLRENSLWMFAPTIDLNA 78
            SPR +   E RRT +Y R LS L+NGI IG KKF+FLAFSSSQLR+NS WMFA    L A
Sbjct: 411  SPRMS--KEGRRTGVYRRILSILQNGIVIGDKKFDFLAFSSSQLRDNSAWMFASRPGLTA 468

Query: 77   DDIRQWMGDFSSIRNVAKYAARLGQ 3
             +IR WMGDFS IRNVAKYAARLGQ
Sbjct: 469  AEIRSWMGDFSQIRNVAKYAARLGQ 493