BLASTX nr result

ID: Mentha29_contig00004408 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Mentha29_contig00004408
         (755 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|EYU21804.1| hypothetical protein MIMGU_mgv1a015806mg [Mimulus...   270   3e-70
ref|XP_006343291.1| PREDICTED: DNA-directed RNA polymerases II, ...   236   5e-60
ref|XP_004234478.1| PREDICTED: DNA-directed RNA polymerases I, I...   236   6e-60
dbj|BAD54456.1| putative RNA polymerase I, II and III 16.5 kDa s...   221   3e-55
gb|EAZ02226.1| hypothetical protein OsI_24321 [Oryza sativa Indi...   221   3e-55
ref|XP_006656427.1| PREDICTED: DNA-directed RNA polymerases II, ...   214   3e-53
gb|EXB86762.1| DNA-directed RNA polymerases I, II, and III subun...   211   2e-52
ref|XP_004152137.1| PREDICTED: DNA-directed RNA polymerases I, I...   211   3e-52
gb|EMT09070.1| DNA-directed RNA polymerases I, II, and III subun...   208   1e-51
ref|XP_002274171.1| PREDICTED: DNA-directed RNA polymerases I, I...   208   2e-51
ref|XP_006442881.1| hypothetical protein CICLE_v10022723mg [Citr...   206   9e-51
ref|XP_002466106.1| hypothetical protein SORBIDRAFT_01g001330 [S...   206   9e-51
ref|XP_002530308.1| DNA-directed RNA polymerases I, II, and III ...   206   9e-51
ref|NP_001147399.1| LOC100281008 [Zea mays] gi|194699730|gb|ACF8...   204   2e-50
ref|XP_003580476.1| PREDICTED: DNA-directed RNA polymerases I, I...   204   3e-50
gb|ACG27451.1| DNA-directed RNA polymerases I, II, and III 17.1 ...   203   5e-50
gb|ABK26380.1| unknown [Picea sitchensis]                             202   1e-49
ref|XP_007022260.1| RNA polymerase Rpb8 isoform 1 [Theobroma cac...   201   2e-49
ref|XP_002463525.1| hypothetical protein SORBIDRAFT_01g001420 [S...   201   2e-49
ref|XP_007212048.1| hypothetical protein PRUPE_ppa011397mg [Prun...   200   4e-49

>gb|EYU21804.1| hypothetical protein MIMGU_mgv1a015806mg [Mimulus guttatus]
          Length = 145

 Score =  270 bits (691), Expect = 3e-70
 Identities = 134/145 (92%), Positives = 141/145 (97%)
 Frame = +2

Query: 143 MVETLFEDIFRIDAIDPDGKKFDRVSRISARSEQFDMLMHLDINTEIYPMRSGEKFMMVL 322
           MVETLFEDIFR+D +DPDGKKFDRVSRISARSEQFDMLM LDINTEIYPMR+G+KFMMVL
Sbjct: 1   MVETLFEDIFRVDELDPDGKKFDRVSRISARSEQFDMLMFLDINTEIYPMRTGDKFMMVL 60

Query: 323 ASTLNLDGTPDTGYYTPGNKKSLADKFDYVMQGKLYRISEESREKQVKADIYVSFGGLLM 502
           ASTLNLDGTPD+GY+ PGNKKSLADKFDYVMQGKLYRISEESREKQVKADI+VSFGGLLM
Sbjct: 61  ASTLNLDGTPDSGYFAPGNKKSLADKFDYVMQGKLYRISEESREKQVKADIFVSFGGLLM 120

Query: 503 MLKGDPSIAARFELDQKLFILIRKV 577
            LKGDPSIAARFELDQKLFILIRKV
Sbjct: 121 QLKGDPSIAARFELDQKLFILIRKV 145


>ref|XP_006343291.1| PREDICTED: DNA-directed RNA polymerases II, IV and V subunit
           8B-like [Solanum tuberosum]
          Length = 145

 Score =  236 bits (603), Expect = 5e-60
 Identities = 118/145 (81%), Positives = 128/145 (88%)
 Frame = +2

Query: 143 MVETLFEDIFRIDAIDPDGKKFDRVSRISARSEQFDMLMHLDINTEIYPMRSGEKFMMVL 322
           MVETLFEDIF +   DPDGKKFDRV+RI ARSEQFDM M LDINTEIYPMR  +KFMMVL
Sbjct: 1   MVETLFEDIFTVTQKDPDGKKFDRVNRIEARSEQFDMFMLLDINTEIYPMRVKDKFMMVL 60

Query: 323 ASTLNLDGTPDTGYYTPGNKKSLADKFDYVMQGKLYRISEESREKQVKADIYVSFGGLLM 502
           ASTLNLDGTPDTGY+  GNKKSLADKF+YVM GKLYRISEE   K VKADI+VSFGGLLM
Sbjct: 61  ASTLNLDGTPDTGYFIQGNKKSLADKFEYVMHGKLYRISEEGSGKHVKADIFVSFGGLLM 120

Query: 503 MLKGDPSIAARFELDQKLFILIRKV 577
            L+GDPSIAA+FELDQK+F+LIRKV
Sbjct: 121 QLRGDPSIAAKFELDQKIFLLIRKV 145


>ref|XP_004234478.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
           rpabc3-like isoform 1 [Solanum lycopersicum]
           gi|460377396|ref|XP_004234479.1| PREDICTED: DNA-directed
           RNA polymerases I, II, and III subunit rpabc3-like
           isoform 2 [Solanum lycopersicum]
          Length = 145

 Score =  236 bits (602), Expect = 6e-60
 Identities = 117/145 (80%), Positives = 128/145 (88%)
 Frame = +2

Query: 143 MVETLFEDIFRIDAIDPDGKKFDRVSRISARSEQFDMLMHLDINTEIYPMRSGEKFMMVL 322
           MVETLFEDIF +   DPDGKKFDRV+RI ARSEQFDM M LD+NTEIYPMR  +KFMMVL
Sbjct: 1   MVETLFEDIFTVTQKDPDGKKFDRVNRIEARSEQFDMFMLLDVNTEIYPMRVKDKFMMVL 60

Query: 323 ASTLNLDGTPDTGYYTPGNKKSLADKFDYVMQGKLYRISEESREKQVKADIYVSFGGLLM 502
           ASTLNLDGTPDTGY+  GNKKSLADKF+YVM GKLYRISEE   K VKADI+VSFGGLLM
Sbjct: 61  ASTLNLDGTPDTGYFIQGNKKSLADKFEYVMHGKLYRISEEGSGKHVKADIFVSFGGLLM 120

Query: 503 MLKGDPSIAARFELDQKLFILIRKV 577
            L+GDPSIAA+FELDQK+F+LIRKV
Sbjct: 121 QLRGDPSIAAKFELDQKIFLLIRKV 145


>dbj|BAD54456.1| putative RNA polymerase I, II and III 16.5 kDa subunit [Oryza
           sativa Japonica Group]
          Length = 396

 Score =  221 bits (562), Expect = 3e-55
 Identities = 109/147 (74%), Positives = 124/147 (84%), Gaps = 1/147 (0%)
 Frame = +2

Query: 140 KMVETLFEDIFRIDAIDPDGKKFDRVSRISARSEQFDMLMHLDINTEIYPMRSGEKFMMV 319
           KMVE LFEDIF +  +DPDGKKFDRVSRI ARSEQFDM M LD+ TE+YPMR+G++F MV
Sbjct: 250 KMVEHLFEDIFTVTRLDPDGKKFDRVSRIEARSEQFDMYMQLDVATEVYPMRAGDRFTMV 309

Query: 320 LASTLNLDGTPDTGYYTPGNKKSLADKFDYVMQGKLYRISEESREKQ-VKADIYVSFGGL 496
           LA TLNLDGTPDTG+YT   +K+LADKFDYVM GKLY+ISE+S   Q  K +IY SFGGL
Sbjct: 310 LAPTLNLDGTPDTGFYTQAGRKTLADKFDYVMHGKLYKISEDSSSGQATKVEIYASFGGL 369

Query: 497 LMMLKGDPSIAARFELDQKLFILIRKV 577
           LMMLKGDPS AA FELDQ+LF+LIRKV
Sbjct: 370 LMMLKGDPSSAASFELDQRLFLLIRKV 396


>gb|EAZ02226.1| hypothetical protein OsI_24321 [Oryza sativa Indica Group]
           gi|125598367|gb|EAZ38147.1| hypothetical protein
           OsJ_22498 [Oryza sativa Japonica Group]
          Length = 191

 Score =  221 bits (562), Expect = 3e-55
 Identities = 109/147 (74%), Positives = 124/147 (84%), Gaps = 1/147 (0%)
 Frame = +2

Query: 140 KMVETLFEDIFRIDAIDPDGKKFDRVSRISARSEQFDMLMHLDINTEIYPMRSGEKFMMV 319
           KMVE LFEDIF +  +DPDGKKFDRVSRI ARSEQFDM M LD+ TE+YPMR+G++F MV
Sbjct: 45  KMVEHLFEDIFTVTRLDPDGKKFDRVSRIEARSEQFDMYMQLDVATEVYPMRAGDRFTMV 104

Query: 320 LASTLNLDGTPDTGYYTPGNKKSLADKFDYVMQGKLYRISEESREKQ-VKADIYVSFGGL 496
           LA TLNLDGTPDTG+YT   +K+LADKFDYVM GKLY+ISE+S   Q  K +IY SFGGL
Sbjct: 105 LAPTLNLDGTPDTGFYTQAGRKTLADKFDYVMHGKLYKISEDSSSGQATKVEIYASFGGL 164

Query: 497 LMMLKGDPSIAARFELDQKLFILIRKV 577
           LMMLKGDPS AA FELDQ+LF+LIRKV
Sbjct: 165 LMMLKGDPSSAASFELDQRLFLLIRKV 191


>ref|XP_006656427.1| PREDICTED: DNA-directed RNA polymerases II, IV and V subunit
           8B-like isoform X1 [Oryza brachyantha]
           gi|573948243|ref|XP_006656428.1| PREDICTED: DNA-directed
           RNA polymerases II, IV and V subunit 8B-like isoform X2
           [Oryza brachyantha] gi|573948245|ref|XP_006656429.1|
           PREDICTED: DNA-directed RNA polymerases II, IV and V
           subunit 8B-like isoform X3 [Oryza brachyantha]
           gi|573948247|ref|XP_006656430.1| PREDICTED: DNA-directed
           RNA polymerases II, IV and V subunit 8B-like isoform X4
           [Oryza brachyantha] gi|573948249|ref|XP_006656431.1|
           PREDICTED: DNA-directed RNA polymerases II, IV and V
           subunit 8B-like isoform X5 [Oryza brachyantha]
          Length = 146

 Score =  214 bits (545), Expect = 3e-53
 Identities = 106/146 (72%), Positives = 121/146 (82%), Gaps = 1/146 (0%)
 Frame = +2

Query: 143 MVETLFEDIFRIDAIDPDGKKFDRVSRISARSEQFDMLMHLDINTEIYPMRSGEKFMMVL 322
           MVE LFEDIF +  +DPDGKKFDRVSRI ARSEQFDM M LD+ TE+YPMR G+KF MVL
Sbjct: 1   MVEHLFEDIFTVTRLDPDGKKFDRVSRIEARSEQFDMYMQLDVATEVYPMRPGDKFTMVL 60

Query: 323 ASTLNLDGTPDTGYYTPGNKKSLADKFDYVMQGKLYRISEE-SREKQVKADIYVSFGGLL 499
           A TLNLDGTPD G+YT   +K+LADK+DYVM GKLY+ISE+ S  +  K +IY SFGGLL
Sbjct: 61  APTLNLDGTPDIGFYTQAGRKTLADKYDYVMHGKLYKISEDGSGGQATKVEIYASFGGLL 120

Query: 500 MMLKGDPSIAARFELDQKLFILIRKV 577
           MMLKGDPS AA FELDQ+LF+LIRKV
Sbjct: 121 MMLKGDPSTAANFELDQRLFLLIRKV 146


>gb|EXB86762.1| DNA-directed RNA polymerases I, II, and III subunit RPABC3 [Morus
           notabilis]
          Length = 187

 Score =  211 bits (538), Expect = 2e-52
 Identities = 102/148 (68%), Positives = 124/148 (83%)
 Frame = +2

Query: 143 MVETLFEDIFRIDAIDPDGKKFDRVSRISARSEQFDMLMHLDINTEIYPMRSGEKFMMVL 322
           M E LFEDIF+ID ++PDGKKFD+V+RI A+SE+FDM MHLD+ T++YPM  GEKF M L
Sbjct: 1   MAEFLFEDIFKIDRLNPDGKKFDKVTRIEAKSEKFDMFMHLDVGTDVYPMNEGEKFSMAL 60

Query: 323 ASTLNLDGTPDTGYYTPGNKKSLADKFDYVMQGKLYRISEESREKQVKADIYVSFGGLLM 502
           +STLN DGTPDTGYYTPGN+K+LAD ++YVMQGKLYRI+E S     KA+I  SFGGLLM
Sbjct: 61  SSTLNEDGTPDTGYYTPGNRKTLADNYEYVMQGKLYRIAEGSGH-HGKAEIDASFGGLLM 119

Query: 503 MLKGDPSIAARFELDQKLFILIRKV*IK 586
           MLKGDPS   ++ELDQ+LF+LIRKV +K
Sbjct: 120 MLKGDPSYFKKYELDQRLFLLIRKVDLK 147


>ref|XP_004152137.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
           rpabc3-like [Cucumis sativus]
           gi|449484745|ref|XP_004156968.1| PREDICTED: DNA-directed
           RNA polymerases I, II, and III subunit rpabc3-like
           [Cucumis sativus]
          Length = 144

 Score =  211 bits (536), Expect = 3e-52
 Identities = 102/145 (70%), Positives = 125/145 (86%)
 Frame = +2

Query: 143 MVETLFEDIFRIDAIDPDGKKFDRVSRISARSEQFDMLMHLDINTEIYPMRSGEKFMMVL 322
           MVE LF+DIF+I+ ++PDGKKFD+V+RI A+SE+FDM MHLDIN+EIYP++ GEKF M L
Sbjct: 1   MVELLFDDIFKIERLNPDGKKFDKVTRIEAKSEKFDMFMHLDINSEIYPLKEGEKFSMAL 60

Query: 323 ASTLNLDGTPDTGYYTPGNKKSLADKFDYVMQGKLYRISEESREKQVKADIYVSFGGLLM 502
           A TLNLDGTPDTGY+  GN+KSLAD+++YVMQGKL+RISE S     KA+I  SFGGLLM
Sbjct: 61  APTLNLDGTPDTGYFLQGNRKSLADRYEYVMQGKLFRISESSGHGG-KAEIDASFGGLLM 119

Query: 503 MLKGDPSIAARFELDQKLFILIRKV 577
           MLKGDPS  ++FELDQ+LF+LIRKV
Sbjct: 120 MLKGDPSHCSKFELDQRLFLLIRKV 144


>gb|EMT09070.1| DNA-directed RNA polymerases I, II, and III subunit rpabc3
           [Aegilops tauschii]
          Length = 220

 Score =  208 bits (530), Expect = 1e-51
 Identities = 103/148 (69%), Positives = 118/148 (79%), Gaps = 3/148 (2%)
 Frame = +2

Query: 143 MVETLFEDIFRIDAIDPDGKKFDRVSRISARSEQFDMLMHLDINTEIYPMRSGEKFMMVL 322
           M E LFEDIF +  IDPDGKKFDRV+RI ARSEQ +M M LDI T++YPM  G+KF MVL
Sbjct: 1   MAEHLFEDIFHVTRIDPDGKKFDRVNRIEARSEQLEMYMQLDIATDVYPMHMGDKFTMVL 60

Query: 323 ASTLNLDGTPDTGYYTPGNKKSLADKFDYVMQGKLYRISEESREKQ---VKADIYVSFGG 493
           A TLNLDGTPDTGYYT   +K+LADK+DYVM GKLY+ISE++  K     K +IY SFGG
Sbjct: 61  APTLNLDGTPDTGYYTQAGRKTLADKYDYVMHGKLYKISEDNSSKDKGPTKVEIYASFGG 120

Query: 494 LLMMLKGDPSIAARFELDQKLFILIRKV 577
           LLM+LKGDPS AA  ELDQKLF+LIRKV
Sbjct: 121 LLMLLKGDPSSAANLELDQKLFLLIRKV 148


>ref|XP_002274171.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
           rpabc3 isoform 1 [Vitis vinifera]
           gi|359478220|ref|XP_003632088.1| PREDICTED: DNA-directed
           RNA polymerases I, II, and III subunit rpabc3 isoform 2
           [Vitis vinifera] gi|296084252|emb|CBI24640.3| unnamed
           protein product [Vitis vinifera]
          Length = 145

 Score =  208 bits (529), Expect = 2e-51
 Identities = 102/145 (70%), Positives = 118/145 (81%)
 Frame = +2

Query: 143 MVETLFEDIFRIDAIDPDGKKFDRVSRISARSEQFDMLMHLDINTEIYPMRSGEKFMMVL 322
           M  TLF DIF++  IDPDGKKFD+VSRI A+SEQ DM M LD+NTEIYPM +GEKF M L
Sbjct: 1   MENTLFGDIFKVIQIDPDGKKFDKVSRIEAQSEQLDMYMQLDVNTEIYPMHAGEKFAMSL 60

Query: 323 ASTLNLDGTPDTGYYTPGNKKSLADKFDYVMQGKLYRISEESREKQVKADIYVSFGGLLM 502
           ASTL+LDGTPDTGYYT   +KSLADKF+YVM GKLY+ISEE     VK  IYVSFGGLLM
Sbjct: 61  ASTLDLDGTPDTGYYTQAGRKSLADKFEYVMHGKLYKISEEGSGPNVKGVIYVSFGGLLM 120

Query: 503 MLKGDPSIAARFELDQKLFILIRKV 577
           ML GDP+  A+ +LDQ++F+LIRKV
Sbjct: 121 MLSGDPANTAKLDLDQRVFLLIRKV 145


>ref|XP_006442881.1| hypothetical protein CICLE_v10022723mg [Citrus clementina]
           gi|568850174|ref|XP_006478800.1| PREDICTED: DNA-directed
           RNA polymerases II, IV and V subunit 8B-like [Citrus
           sinensis] gi|557545143|gb|ESR56121.1| hypothetical
           protein CICLE_v10022723mg [Citrus clementina]
          Length = 146

 Score =  206 bits (523), Expect = 9e-51
 Identities = 95/141 (67%), Positives = 119/141 (84%)
 Frame = +2

Query: 155 LFEDIFRIDAIDPDGKKFDRVSRISARSEQFDMLMHLDINTEIYPMRSGEKFMMVLASTL 334
           LFEDIF ++ IDPDGKKFD+VSRI A S+  DM M LD+N+E+YPMR G+KF M LA TL
Sbjct: 6   LFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMALAHTL 65

Query: 335 NLDGTPDTGYYTPGNKKSLADKFDYVMQGKLYRISEESREKQVKADIYVSFGGLLMMLKG 514
           NLDGTPDTGYYTPG +K+LADK++Y+M GKL++I +E   K +KA+IYVS+GGLLMMLKG
Sbjct: 66  NLDGTPDTGYYTPGARKTLADKYEYIMHGKLFKIGDEGSGKSLKAEIYVSYGGLLMMLKG 125

Query: 515 DPSIAARFELDQKLFILIRKV 577
           DPS  + FELDQ+LF+L+RK+
Sbjct: 126 DPSYVSHFELDQRLFLLMRKL 146


>ref|XP_002466106.1| hypothetical protein SORBIDRAFT_01g001330 [Sorghum bicolor]
           gi|241919960|gb|EER93104.1| hypothetical protein
           SORBIDRAFT_01g001330 [Sorghum bicolor]
          Length = 145

 Score =  206 bits (523), Expect = 9e-51
 Identities = 96/145 (66%), Positives = 119/145 (82%)
 Frame = +2

Query: 143 MVETLFEDIFRIDAIDPDGKKFDRVSRISARSEQFDMLMHLDINTEIYPMRSGEKFMMVL 322
           M E LFED F +  +DPDGKKFD+VSR+ ARSEQ  M M LD+ T++YP+R+GEKF MVL
Sbjct: 1   MSEHLFEDTFIVSRLDPDGKKFDKVSRVEARSEQLGMYMQLDVATDVYPLRAGEKFNMVL 60

Query: 323 ASTLNLDGTPDTGYYTPGNKKSLADKFDYVMQGKLYRISEESREKQVKADIYVSFGGLLM 502
           A TLNLDGTPDTGYYT   +K+LAD ++YVMQGKLY+ISE++  +  K +IY SFGGLLM
Sbjct: 61  APTLNLDGTPDTGYYTQAGRKTLADNYEYVMQGKLYKISEDTSSQNAKVEIYASFGGLLM 120

Query: 503 MLKGDPSIAARFELDQKLFILIRKV 577
           +L+GDPS AA FELDQ+LF+L+RKV
Sbjct: 121 LLRGDPSTAASFELDQRLFLLMRKV 145


>ref|XP_002530308.1| DNA-directed RNA polymerases I, II, and III 17.1 kDa polypeptide,
           putative [Ricinus communis] gi|223530164|gb|EEF32075.1|
           DNA-directed RNA polymerases I, II, and III 17.1 kDa
           polypeptide, putative [Ricinus communis]
          Length = 146

 Score =  206 bits (523), Expect = 9e-51
 Identities = 96/141 (68%), Positives = 118/141 (83%)
 Frame = +2

Query: 155 LFEDIFRIDAIDPDGKKFDRVSRISARSEQFDMLMHLDINTEIYPMRSGEKFMMVLASTL 334
           LFEDIF +D +DPDGKKFD+VSRI A S+  DM MHLD+NTEIYPM  G+KF M LA TL
Sbjct: 6   LFEDIFVVDKLDPDGKKFDKVSRIEAHSQNCDMFMHLDVNTEIYPMAVGDKFTMALAHTL 65

Query: 335 NLDGTPDTGYYTPGNKKSLADKFDYVMQGKLYRISEESREKQVKADIYVSFGGLLMMLKG 514
           NLDGTPDTGYYT G +K+LADK++Y+M GKLY+ISEE   K VKA++ VS+GGLLM+L+G
Sbjct: 66  NLDGTPDTGYYTQGARKTLADKYEYIMNGKLYKISEEGSGKAVKAEMLVSYGGLLMLLRG 125

Query: 515 DPSIAARFELDQKLFILIRKV 577
           DPS  + FELDQ+LF+L+RK+
Sbjct: 126 DPSHVSHFELDQRLFLLMRKL 146


>ref|NP_001147399.1| LOC100281008 [Zea mays] gi|194699730|gb|ACF83949.1| unknown [Zea
           mays] gi|195607894|gb|ACG25777.1| DNA-directed RNA
           polymerases I, II, and III 17.1 kDa polypeptide [Zea
           mays] gi|195608506|gb|ACG26083.1| DNA-directed RNA
           polymerases I, II, and III 17.1 kDa polypeptide [Zea
           mays] gi|195611040|gb|ACG27350.1| DNA-directed RNA
           polymerases I, II, and III 17.1 kDa polypeptide [Zea
           mays] gi|195649823|gb|ACG44379.1| DNA-directed RNA
           polymerases I, II, and III 17.1 kDa polypeptide [Zea
           mays] gi|195653495|gb|ACG46215.1| DNA-directed RNA
           polymerases I, II, and III 17.1 kDa polypeptide [Zea
           mays] gi|238014148|gb|ACR38109.1| unknown [Zea mays]
           gi|413932441|gb|AFW66992.1| DNA-directed RNA polymerase
           I, II, and III polypeptide isoform 1 [Zea mays]
           gi|413932442|gb|AFW66993.1| DNA-directed RNA polymerase
           I, II, and III polypeptide isoform 2 [Zea mays]
           gi|413932443|gb|AFW66994.1| DNA-directed RNA polymerase
           I, II, and III polypeptide isoform 3 [Zea mays]
           gi|413932444|gb|AFW66995.1| DNA-directed RNA polymerase
           I, II, and III polypeptide isoform 4 [Zea mays]
          Length = 146

 Score =  204 bits (520), Expect = 2e-50
 Identities = 98/146 (67%), Positives = 119/146 (81%), Gaps = 1/146 (0%)
 Frame = +2

Query: 143 MVETLFEDIFRIDAIDPDGKKFDRVSRISARSEQFDMLMHLDINTEIYPMRSGEKFMMVL 322
           M E LFED F +  +DPDGKKFDRVSR+ ARSEQ DM M LD+ T++YPM +GEKF MV+
Sbjct: 1   MSEHLFEDTFVVTRLDPDGKKFDRVSRVEARSEQLDMYMQLDVATDVYPMHAGEKFNMVI 60

Query: 323 ASTLNLDGTPDTGYYTPGNKKSLADKFDYVMQGKLYRISEESREKQ-VKADIYVSFGGLL 499
           A TLNLDGTPDTGYYT   +K+LAD ++YVMQGKLY+ISE++   Q  K ++Y SFGGLL
Sbjct: 61  APTLNLDGTPDTGYYTQAGRKTLADNYEYVMQGKLYKISEDTSSSQNAKVEMYASFGGLL 120

Query: 500 MMLKGDPSIAARFELDQKLFILIRKV 577
           M+L+GDPS AA FELDQ+LF+LIRKV
Sbjct: 121 MLLRGDPSTAASFELDQRLFLLIRKV 146


>ref|XP_003580476.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
           rpabc3-like [Brachypodium distachyon]
          Length = 146

 Score =  204 bits (519), Expect = 3e-50
 Identities = 101/146 (69%), Positives = 118/146 (80%), Gaps = 1/146 (0%)
 Frame = +2

Query: 143 MVETLFEDIFRIDAIDPDGKKFDRVSRISARSEQFDMLMHLDINTEIYPMRSGEKFMMVL 322
           M E LFEDIF ++ IDPDGKKFDRV+RI ARSEQF M M LD+ T +YPM +G+KF MVL
Sbjct: 1   MAEHLFEDIFVVNRIDPDGKKFDRVNRIEARSEQFHMYMQLDVATYVYPMHAGDKFTMVL 60

Query: 323 ASTLNLDGTPDTGYYTPGNKKSLADKFDYVMQGKLYRISEESREKQ-VKADIYVSFGGLL 499
           A TLNLDGTPDTGYYT   +K+LADK+DYVM GKLY+ISE+S   Q  K + Y SFGGLL
Sbjct: 61  APTLNLDGTPDTGYYTQAGRKTLADKYDYVMHGKLYKISEDSSGGQAAKVETYASFGGLL 120

Query: 500 MMLKGDPSIAARFELDQKLFILIRKV 577
           M+LKGDPS AA  ELDQ+LF+L+RKV
Sbjct: 121 MLLKGDPSSAANLELDQRLFLLMRKV 146


>gb|ACG27451.1| DNA-directed RNA polymerases I, II, and III 17.1 kDa polypeptide
           [Zea mays]
          Length = 146

 Score =  203 bits (517), Expect = 5e-50
 Identities = 97/146 (66%), Positives = 119/146 (81%), Gaps = 1/146 (0%)
 Frame = +2

Query: 143 MVETLFEDIFRIDAIDPDGKKFDRVSRISARSEQFDMLMHLDINTEIYPMRSGEKFMMVL 322
           M + LFED F +  +DPDGKKFDRVSR+ ARSEQ DM M LD+ T++YPM +GEKF MV+
Sbjct: 1   MSDHLFEDTFVVTRLDPDGKKFDRVSRVEARSEQLDMYMQLDVATDVYPMHAGEKFNMVI 60

Query: 323 ASTLNLDGTPDTGYYTPGNKKSLADKFDYVMQGKLYRISEESREKQ-VKADIYVSFGGLL 499
           A TLNLDGTPDTGYYT   +K+LAD ++YVMQGKLY+ISE++   Q  K ++Y SFGGLL
Sbjct: 61  APTLNLDGTPDTGYYTQAGRKTLADNYEYVMQGKLYKISEDTSSSQNAKVEMYASFGGLL 120

Query: 500 MMLKGDPSIAARFELDQKLFILIRKV 577
           M+L+GDPS AA FELDQ+LF+LIRKV
Sbjct: 121 MLLRGDPSTAASFELDQRLFLLIRKV 146


>gb|ABK26380.1| unknown [Picea sitchensis]
          Length = 145

 Score =  202 bits (514), Expect = 1e-49
 Identities = 98/145 (67%), Positives = 115/145 (79%)
 Frame = +2

Query: 143 MVETLFEDIFRIDAIDPDGKKFDRVSRISARSEQFDMLMHLDINTEIYPMRSGEKFMMVL 322
           MVE LFEDIF +  IDPDGKKFD+VSRI ARSEQFDM M LD+N ++YP+  GEKF + L
Sbjct: 1   MVELLFEDIFTVTRIDPDGKKFDKVSRIEARSEQFDMYMLLDVNIDVYPVSVGEKFAVAL 60

Query: 323 ASTLNLDGTPDTGYYTPGNKKSLADKFDYVMQGKLYRISEESREKQVKADIYVSFGGLLM 502
           A TLNLDGTPD GY+  G +KSLADK++YVM GKLY +SEE     VK +I  SFGGLLM
Sbjct: 61  APTLNLDGTPDNGYFIQGGRKSLADKYEYVMYGKLYNLSEEGSGANVKVEINASFGGLLM 120

Query: 503 MLKGDPSIAARFELDQKLFILIRKV 577
           +LKGDPS A  FELDQ+LF+L+RKV
Sbjct: 121 LLKGDPSNAGNFELDQRLFLLMRKV 145


>ref|XP_007022260.1| RNA polymerase Rpb8 isoform 1 [Theobroma cacao]
           gi|508721888|gb|EOY13785.1| RNA polymerase Rpb8 isoform
           1 [Theobroma cacao]
          Length = 145

 Score =  201 bits (512), Expect = 2e-49
 Identities = 94/140 (67%), Positives = 120/140 (85%)
 Frame = +2

Query: 158 FEDIFRIDAIDPDGKKFDRVSRISARSEQFDMLMHLDINTEIYPMRSGEKFMMVLASTLN 337
           FEDIF +D +DPDGKKFD+V+RI ARS+  DM MHLD+N+EIYPM  G+KF M LA TLN
Sbjct: 7   FEDIFVVDKLDPDGKKFDKVTRIEARSQNCDMFMHLDVNSEIYPMHVGDKFTMALAHTLN 66

Query: 338 LDGTPDTGYYTPGNKKSLADKFDYVMQGKLYRISEESREKQVKADIYVSFGGLLMMLKGD 517
           LDGTPDTGYYTPG +KSLADK++YVM GKLY++S++   K +KA+IYVS+GGLLMML+G+
Sbjct: 67  LDGTPDTGYYTPG-RKSLADKYEYVMHGKLYKVSDDGSGKGLKAEIYVSYGGLLMMLRGE 125

Query: 518 PSIAARFELDQKLFILIRKV 577
            S  ++FELDQ+LF+L+RK+
Sbjct: 126 ASHVSQFELDQRLFLLMRKL 145


>ref|XP_002463525.1| hypothetical protein SORBIDRAFT_01g001420 [Sorghum bicolor]
           gi|241917379|gb|EER90523.1| hypothetical protein
           SORBIDRAFT_01g001420 [Sorghum bicolor]
          Length = 145

 Score =  201 bits (512), Expect = 2e-49
 Identities = 95/145 (65%), Positives = 117/145 (80%)
 Frame = +2

Query: 143 MVETLFEDIFRIDAIDPDGKKFDRVSRISARSEQFDMLMHLDINTEIYPMRSGEKFMMVL 322
           M E LFED F ++ +DPDGKKFDRVSR+ ARSEQ  M M LD+ T++YPM+  EKF MVL
Sbjct: 1   MSEHLFEDTFVVNRLDPDGKKFDRVSRVEARSEQLAMYMQLDVATDVYPMQPNEKFNMVL 60

Query: 323 ASTLNLDGTPDTGYYTPGNKKSLADKFDYVMQGKLYRISEESREKQVKADIYVSFGGLLM 502
           A TLNLDGTPDTGYYT   +K+LAD ++YVM GKLY+ISE++  +  K +IY SFGGLLM
Sbjct: 61  APTLNLDGTPDTGYYTQAGRKTLADNYEYVMHGKLYKISEDTSSQNAKVEIYASFGGLLM 120

Query: 503 MLKGDPSIAARFELDQKLFILIRKV 577
           +L+GDPS AA FELDQ+LF+L+RKV
Sbjct: 121 LLRGDPSTAASFELDQRLFLLMRKV 145


>ref|XP_007212048.1| hypothetical protein PRUPE_ppa011397mg [Prunus persica]
           gi|462407913|gb|EMJ13247.1| hypothetical protein
           PRUPE_ppa011397mg [Prunus persica]
          Length = 212

 Score =  200 bits (509), Expect = 4e-49
 Identities = 95/150 (63%), Positives = 126/150 (84%)
 Frame = +2

Query: 128 LRVAKMVETLFEDIFRIDAIDPDGKKFDRVSRISARSEQFDMLMHLDINTEIYPMRSGEK 307
           +R A+MV+ LFEDIF+I  ++PDGKKFD+V+RI A+SE  +M MHLD+N+E+YPMR GEK
Sbjct: 64  VRDARMVDRLFEDIFQILRLNPDGKKFDKVTRIEAKSETCEMFMHLDVNSEVYPMREGEK 123

Query: 308 FMMVLASTLNLDGTPDTGYYTPGNKKSLADKFDYVMQGKLYRISEESREKQVKADIYVSF 487
           F M L ST+NLDGTPDTGY+T GN+K+LAD+++YVMQGKL++ISE S+ +  KA++  SF
Sbjct: 124 FSMALTSTINLDGTPDTGYFTQGNRKTLADEYEYVMQGKLFKISEGSK-RDPKAEVNASF 182

Query: 488 GGLLMMLKGDPSIAARFELDQKLFILIRKV 577
           GGLLMMLKG+ S    FELDQ++F+LIRK+
Sbjct: 183 GGLLMMLKGEASQFKNFELDQRMFLLIRKL 212


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