BLASTX nr result
ID: Mentha29_contig00003942
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Mentha29_contig00003942
(935 letters)
Database: ./nr
38,876,450 sequences; 13,856,398,315 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|YP_008992313.1| ribosomal protein S4 (mitochondrion) [Salvia... 77 1e-11
ref|YP_004222288.1| ribosomal protein S4 [Beta vulgaris subsp. m... 75 3e-11
dbj|BAD83538.2| ribosomal protein S4, partial (mitochondrion) [N... 75 3e-11
ref|YP_005090486.1| ribosomal protein S4 (mitochondrion) [Lotus ... 75 4e-11
ref|YP_005090450.1| ribosomal protein S4 (mitochondrion) [Millet... 75 4e-11
ref|YP_002000578.1| ribosomal protein S4 [Oryza sativa Japonica ... 75 5e-11
ref|YP_717175.1| ribosomal protein S4 [Brassica napus] gi|375911... 74 8e-11
sp|Q31708.2|RT04_ARATH RecName: Full=Ribosomal protein S4, mitoc... 74 8e-11
gb|ACH78250.1| ribosomal protein S4 [Arabidopsis thaliana] 74 8e-11
ref|YP_008802509.1| ribosomal protein S4 (mitochondrion) [Asclep... 74 1e-10
ref|NP_064046.2| rps4 gene product (mitochondrion) [Beta vulgari... 74 1e-10
ref|YP_006460178.1| ribosomal protein subunit S4 (mitochondrion)... 72 2e-10
gb|EPS74675.1| hypothetical protein M569_00050 [Genlisea aurea] 72 3e-10
ref|YP_005090421.1| rps4 gene product (mitochondrion) [Boea hygr... 71 7e-10
gb|AGL75402.1| ribosomal protein S4 (mitochondrion) [Utricularia... 70 1e-09
gb|EXB57808.1| hypothetical protein L484_002790 [Morus notabilis] 69 3e-09
gb|AHA47128.1| ribosomal protein S4 (mitochondrion) [Amborella t... 69 3e-09
ref|YP_003587235.1| ribosomal protein S4 [Citrullus lanatus] gi|... 69 3e-09
ref|YP_007889804.1| ribosomal protein S4 (mitochondrion) [Vigna ... 67 8e-09
ref|YP_007516900.1| ribosomal protein S4 (mitochondrion) [Glycin... 67 8e-09
>ref|YP_008992313.1| ribosomal protein S4 (mitochondrion) [Salvia miltiorrhiza]
gi|534292286|gb|AGU16578.1| ribosomal protein S4
(mitochondrion) [Salvia miltiorrhiza]
Length = 351
Score = 77.0 bits (188), Expect = 1e-11
Identities = 37/67 (55%), Positives = 47/67 (70%)
Frame = -2
Query: 589 SYSPQQLGTNRFGRNKKIKKIDLPTHYLEVNHKIKKAIMFYGPHIAHIPLHVSMKDLNLL 410
S SP Q NR +N+KIK+I+LPTHY EVNH+ KA++ YGP+I HIP + +KD NLL
Sbjct: 281 SASPHQFTMNRKRKNRKIKRIELPTHYSEVNHRTPKAVVSYGPNIGHIPHDIRLKDPNLL 340
Query: 409 CWSEYER 389
S ER
Sbjct: 341 LRSGNER 347
>ref|YP_004222288.1| ribosomal protein S4 [Beta vulgaris subsp. maritima]
gi|317905723|emb|CBJ14108.1| ribosomal protein S4 [Beta
vulgaris subsp. maritima] gi|319439803|emb|CBJ17515.1|
ribosomal protein S4 [Beta vulgaris subsp. maritima]
Length = 315
Score = 75.5 bits (184), Expect = 3e-11
Identities = 35/71 (49%), Positives = 51/71 (71%)
Frame = -2
Query: 613 ANVDRMRKSYSPQQLGTNRFGRNKKIKKIDLPTHYLEVNHKIKKAIMFYGPHIAHIPLHV 434
A +RM++++S T + ++IK+I+LPTHY EVNH+ KA++FYGP+I HIP +
Sbjct: 239 AEHNRMKRNFSHSV--TLFLSKKRRIKRIELPTHYSEVNHRTLKAVVFYGPNIDHIPHDI 296
Query: 433 SMKDLNLLCWS 401
+KDLNLL WS
Sbjct: 297 RLKDLNLLLWS 307
>dbj|BAD83538.2| ribosomal protein S4, partial (mitochondrion) [Nicotiana tabacum]
Length = 349
Score = 75.5 bits (184), Expect = 3e-11
Identities = 32/54 (59%), Positives = 44/54 (81%)
Frame = -2
Query: 562 NRFGRNKKIKKIDLPTHYLEVNHKIKKAIMFYGPHIAHIPLHVSMKDLNLLCWS 401
++F + KIK+I+LPTHYLEVN++ KA++FYGP+I HIP + +KDLNLL WS
Sbjct: 288 HQFTKKIKIKRIELPTHYLEVNYRTLKAVVFYGPNIGHIPHDIRLKDLNLLLWS 341
>ref|YP_005090486.1| ribosomal protein S4 (mitochondrion) [Lotus japonicus]
gi|357197350|gb|AET62946.1| ribosomal protein S4
(mitochondrion) [Lotus japonicus]
Length = 358
Score = 75.1 bits (183), Expect = 4e-11
Identities = 31/54 (57%), Positives = 44/54 (81%)
Frame = -2
Query: 562 NRFGRNKKIKKIDLPTHYLEVNHKIKKAIMFYGPHIAHIPLHVSMKDLNLLCWS 401
++F ++IK+I+LPTHYLEVN++ KA++FYGP+I HIP + +KDLNLL WS
Sbjct: 297 HQFTMKRRIKRIELPTHYLEVNYRTLKAVVFYGPNIGHIPHDIRLKDLNLLLWS 350
>ref|YP_005090450.1| ribosomal protein S4 (mitochondrion) [Millettia pinnata]
gi|372450274|ref|YP_005090457.1| ribosomal protein S4
(mitochondrion) [Millettia pinnata]
gi|357197313|gb|AET62910.1| ribosomal protein S4
(mitochondrion) [Millettia pinnata]
gi|357197320|gb|AET62917.1| ribosomal protein S4
(mitochondrion) [Millettia pinnata]
Length = 358
Score = 75.1 bits (183), Expect = 4e-11
Identities = 31/54 (57%), Positives = 44/54 (81%)
Frame = -2
Query: 562 NRFGRNKKIKKIDLPTHYLEVNHKIKKAIMFYGPHIAHIPLHVSMKDLNLLCWS 401
++F ++IK+I+LPTHYLEVN++ KA++FYGP+I HIP + +KDLNLL WS
Sbjct: 297 HQFTMKRRIKRIELPTHYLEVNYRTLKAVVFYGPNIGHIPHDIRLKDLNLLLWS 350
>ref|YP_002000578.1| ribosomal protein S4 [Oryza sativa Japonica Group]
gi|92700092|dbj|BAC19883.2| Ribosomal protein S4 [Oryza
sativa Japonica Group]
Length = 352
Score = 74.7 bits (182), Expect = 5e-11
Identities = 32/52 (61%), Positives = 42/52 (80%)
Frame = -2
Query: 556 FGRNKKIKKIDLPTHYLEVNHKIKKAIMFYGPHIAHIPLHVSMKDLNLLCWS 401
F R +IK+I+LPTHYLEVN++ KA++FYGP+I HIP + +KDLNLL WS
Sbjct: 293 FTRKIRIKRIELPTHYLEVNYRTLKAVVFYGPNIGHIPHDIRLKDLNLLLWS 344
>ref|YP_717175.1| ribosomal protein S4 [Brassica napus] gi|37591124|dbj|BAC98926.1|
ribosomal protein S4 [Brassica napus]
Length = 362
Score = 73.9 bits (180), Expect = 8e-11
Identities = 31/52 (59%), Positives = 42/52 (80%)
Frame = -2
Query: 544 KKIKKIDLPTHYLEVNHKIKKAIMFYGPHIAHIPLHVSMKDLNLLCWSEYER 389
++IK+I+LPTHYLEVN++ KA++FYGP+I HIP + +KDLNLL WS R
Sbjct: 307 RRIKRIELPTHYLEVNYRTPKAVVFYGPNIGHIPHDIRLKDLNLLLWSRNGR 358
>sp|Q31708.2|RT04_ARATH RecName: Full=Ribosomal protein S4, mitochondrial
Length = 362
Score = 73.9 bits (180), Expect = 8e-11
Identities = 31/52 (59%), Positives = 42/52 (80%)
Frame = -2
Query: 544 KKIKKIDLPTHYLEVNHKIKKAIMFYGPHIAHIPLHVSMKDLNLLCWSEYER 389
++IK+I+LPTHYLEVN++ KA++FYGP+I HIP + +KDLNLL WS R
Sbjct: 307 RRIKRIELPTHYLEVNYRTPKAVVFYGPNIGHIPHDIRLKDLNLLLWSRNGR 358
>gb|ACH78250.1| ribosomal protein S4 [Arabidopsis thaliana]
Length = 362
Score = 73.9 bits (180), Expect = 8e-11
Identities = 31/52 (59%), Positives = 42/52 (80%)
Frame = -2
Query: 544 KKIKKIDLPTHYLEVNHKIKKAIMFYGPHIAHIPLHVSMKDLNLLCWSEYER 389
++IK+I+LPTHYLEVN++ KA++FYGP+I HIP + +KDLNLL WS R
Sbjct: 307 RRIKRIELPTHYLEVNYRTPKAVVFYGPNIGHIPHDIRLKDLNLLLWSRNGR 358
>ref|YP_008802509.1| ribosomal protein S4 (mitochondrion) [Asclepias syriaca]
gi|556562347|gb|AGZ63043.1| ribosomal protein S4
(mitochondrion) [Asclepias syriaca]
Length = 274
Score = 73.6 bits (179), Expect = 1e-10
Identities = 31/54 (57%), Positives = 43/54 (79%)
Frame = -2
Query: 562 NRFGRNKKIKKIDLPTHYLEVNHKIKKAIMFYGPHIAHIPLHVSMKDLNLLCWS 401
++F +K K+I+LPTHYLEVN++ KA++FYGP+I HIP + +KDLNLL WS
Sbjct: 213 HQFTMKRKRKRIELPTHYLEVNYRTLKAVVFYGPNIGHIPHDIRLKDLNLLLWS 266
>ref|NP_064046.2| rps4 gene product (mitochondrion) [Beta vulgaris subsp. vulgaris]
gi|346683270|ref|YP_004842202.1| ribosomal protein S4
[Beta macrocarpa] gi|87248052|gb|ABD36080.1| ribosomal
protein S4 [Beta vulgaris subsp. vulgaris]
gi|148491424|dbj|BAA99356.2| ribosomal protein S4 [Beta
vulgaris subsp. vulgaris] gi|320148708|emb|CBJ23346.1|
ribosomal protein S4 [Beta vulgaris subsp. maritima]
gi|345500188|emb|CBX25007.1| ribosomal protein S4 [Beta
macrocarpa] gi|384939188|emb|CBL52035.1| ribosoma
lprotein S4 (mitochondrion) [Beta vulgaris subsp.
maritima]
Length = 315
Score = 73.6 bits (179), Expect = 1e-10
Identities = 33/74 (44%), Positives = 49/74 (66%)
Frame = -2
Query: 622 RVGANVDRMRKSYSPQQLGTNRFGRNKKIKKIDLPTHYLEVNHKIKKAIMFYGPHIAHIP 443
+ G++ + R + T + ++IK+I+LPTHY EVNH+ KA++FYGP+I HIP
Sbjct: 234 KFGSDAEHNRMKRNFYHSVTLFLSKKRRIKRIELPTHYSEVNHRTLKAVVFYGPNIDHIP 293
Query: 442 LHVSMKDLNLLCWS 401
+ +KDLNLL WS
Sbjct: 294 HDIRLKDLNLLLWS 307
>ref|YP_006460178.1| ribosomal protein subunit S4 (mitochondrion) [Mimulus guttatus]
gi|340007672|gb|AEK26536.1| ribosomal protein subunit S4
(mitochondrion) [Mimulus guttatus]
Length = 353
Score = 72.4 bits (176), Expect = 2e-10
Identities = 35/67 (52%), Positives = 45/67 (67%)
Frame = -2
Query: 589 SYSPQQLGTNRFGRNKKIKKIDLPTHYLEVNHKIKKAIMFYGPHIAHIPLHVSMKDLNLL 410
S SP Q R + +KIK+I+LPTHY EVNH+ KA++ YGP+I HIP + +KD NLL
Sbjct: 283 SASPHQFTMKRKRKKRKIKRIELPTHYSEVNHRTPKAVVSYGPNIGHIPHDIRLKDPNLL 342
Query: 409 CWSEYER 389
S ER
Sbjct: 343 LRSGNER 349
>gb|EPS74675.1| hypothetical protein M569_00050 [Genlisea aurea]
Length = 354
Score = 72.0 bits (175), Expect = 3e-10
Identities = 36/67 (53%), Positives = 46/67 (68%)
Frame = -2
Query: 589 SYSPQQLGTNRFGRNKKIKKIDLPTHYLEVNHKIKKAIMFYGPHIAHIPLHVSMKDLNLL 410
S SP Q R +KIK+I+LPTHYLEVNH+ +KA++ YGP+I HIP + +KD NLL
Sbjct: 287 SASPHQFTMKR---KRKIKRIELPTHYLEVNHRTQKAVVSYGPNIGHIPHDIRLKDPNLL 343
Query: 409 CWSEYER 389
S ER
Sbjct: 344 LRSRNER 350
>ref|YP_005090421.1| rps4 gene product (mitochondrion) [Boea hygrometrica]
gi|340549497|gb|AEK53318.1| ribosomal protein S4
(mitochondrion) [Boea hygrometrica]
Length = 329
Score = 70.9 bits (172), Expect = 7e-10
Identities = 32/58 (55%), Positives = 43/58 (74%)
Frame = -2
Query: 562 NRFGRNKKIKKIDLPTHYLEVNHKIKKAIMFYGPHIAHIPLHVSMKDLNLLCWSEYER 389
++F +KIK+I+LPTHY EVNH+ KA++FYGP+I HIP + +KD NLL S ER
Sbjct: 268 HQFTMKRKIKRIELPTHYSEVNHRTPKAVVFYGPNIGHIPHDIRLKDPNLLLRSGNER 325
>gb|AGL75402.1| ribosomal protein S4 (mitochondrion) [Utricularia gibba]
Length = 370
Score = 70.1 bits (170), Expect = 1e-09
Identities = 32/58 (55%), Positives = 43/58 (74%)
Frame = -2
Query: 562 NRFGRNKKIKKIDLPTHYLEVNHKIKKAIMFYGPHIAHIPLHVSMKDLNLLCWSEYER 389
++F +KIK+I+LPTHYLEVNH+ KA++ YGP+I HIP + +KD NLL S ER
Sbjct: 305 HQFTMKRKIKRIELPTHYLEVNHRTPKAVISYGPNIGHIPHDIRLKDPNLLLRSGNER 362
>gb|EXB57808.1| hypothetical protein L484_002790 [Morus notabilis]
Length = 263
Score = 68.6 bits (166), Expect = 3e-09
Identities = 29/51 (56%), Positives = 41/51 (80%)
Frame = -2
Query: 562 NRFGRNKKIKKIDLPTHYLEVNHKIKKAIMFYGPHIAHIPLHVSMKDLNLL 410
++F ++IK+I+LPTHYLEVNH+ KA++ YGP+I HIP + +KDLNLL
Sbjct: 202 HQFTMKRRIKRIELPTHYLEVNHRTPKAMVSYGPNIGHIPHDIRLKDLNLL 252
>gb|AHA47128.1| ribosomal protein S4 (mitochondrion) [Amborella trichopoda]
Length = 354
Score = 68.6 bits (166), Expect = 3e-09
Identities = 29/50 (58%), Positives = 40/50 (80%)
Frame = -2
Query: 562 NRFGRNKKIKKIDLPTHYLEVNHKIKKAIMFYGPHIAHIPLHVSMKDLNL 413
+RF R ++IK+I+LPTHYLEVN++ KA++FYGP I HIP + +KD NL
Sbjct: 284 HRFTRKRRIKRIELPTHYLEVNYRTLKAVVFYGPDIGHIPHDIRLKDPNL 333
>ref|YP_003587235.1| ribosomal protein S4 [Citrullus lanatus]
gi|259156791|gb|ACV96653.1| ribosomal protein S4
[Citrullus lanatus]
Length = 355
Score = 68.6 bits (166), Expect = 3e-09
Identities = 29/50 (58%), Positives = 40/50 (80%)
Frame = -2
Query: 562 NRFGRNKKIKKIDLPTHYLEVNHKIKKAIMFYGPHIAHIPLHVSMKDLNL 413
++F KIK+I+LPTHYLEVN++ KA++FYGP+I HIP + +KDLNL
Sbjct: 294 HQFTMKSKIKRIELPTHYLEVNYRTLKAVVFYGPNIGHIPHDIRLKDLNL 343
>ref|YP_007889804.1| ribosomal protein S4 (mitochondrion) [Vigna angularis]
gi|478620963|dbj|BAN15009.1| ribosomal protein S4
(mitochondrion) [Vigna angularis]
Length = 346
Score = 67.4 bits (163), Expect = 8e-09
Identities = 28/48 (58%), Positives = 38/48 (79%)
Frame = -2
Query: 556 FGRNKKIKKIDLPTHYLEVNHKIKKAIMFYGPHIAHIPLHVSMKDLNL 413
F R ++IK+I+LPTHY EVNH+ KA++FYGP+I HIP + +KD NL
Sbjct: 287 FPRKRRIKRIELPTHYSEVNHRTPKAVVFYGPNIGHIPHDIRLKDPNL 334
>ref|YP_007516900.1| ribosomal protein S4 (mitochondrion) [Glycine max]
gi|403311571|gb|AFR34319.1| ribosomal protein S4
(mitochondrion) [Glycine max]
Length = 346
Score = 67.4 bits (163), Expect = 8e-09
Identities = 28/48 (58%), Positives = 38/48 (79%)
Frame = -2
Query: 556 FGRNKKIKKIDLPTHYLEVNHKIKKAIMFYGPHIAHIPLHVSMKDLNL 413
F R ++IK+I+LPTHY EVNH+ KA++FYGP+I HIP + +KD NL
Sbjct: 287 FPRKRRIKRIELPTHYSEVNHRTPKAVVFYGPNIGHIPHDIRLKDPNL 334