BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Mentha29_contig00002618
         (1952 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|EYU20393.1| hypothetical protein MIMGU_mgv1a018845mg [Mimulus...   547   e-153
ref|XP_002275831.1| PREDICTED: RNA polymerase sigma factor rpoD ...   466   e-128
ref|XP_006355305.1| PREDICTED: RNA polymerase sigma factor sigC-...   461   e-127
emb|CAN83254.1| hypothetical protein VITISV_036980 [Vitis vinifera]   459   e-126
ref|XP_004245130.1| PREDICTED: RNA polymerase sigma factor sigC-...   452   e-124
ref|XP_006450763.1| hypothetical protein CICLE_v10007968mg [Citr...   444   e-122
ref|XP_004291147.1| PREDICTED: RNA polymerase sigma factor sigC-...   442   e-121
ref|XP_002516489.1| RNA polymerase sigma factor rpoD, putative [...   441   e-121
ref|XP_006475980.1| PREDICTED: RNA polymerase sigma factor sigC-...   440   e-120
ref|XP_007222923.1| hypothetical protein PRUPE_ppa003696mg [Prun...   427   e-116
ref|XP_002308586.1| hypothetical protein POPTR_0006s25090g [Popu...   416   e-113
emb|CAD20832.1| sigma factor [Spinacia oleracea]                      406   e-110
ref|XP_004498453.1| PREDICTED: RNA polymerase sigma factor sigC-...   402   e-109
ref|XP_007012219.1| RNApolymerase sigma-subunit C, putative [The...   398   e-108
ref|XP_003588449.1| RNA polymerase sigma-B factor [Medicago trun...   397   e-108
ref|XP_003551127.1| PREDICTED: RNA polymerase sigma factor sigC ...   392   e-106
gb|EPS65656.1| hypothetical protein M569_09119, partial [Genlise...   390   e-106
ref|XP_002877947.1| predicted protein [Arabidopsis lyrata subsp....   375   e-101
dbj|BAA22215.1| plastid RNA polymerase sigma-subunit [Arabidopsi...   371   e-100
ref|XP_006290815.1| hypothetical protein CARUB_v10016920mg [Caps...   371   e-100

>gb|EYU20393.1| hypothetical protein MIMGU_mgv1a018845mg [Mimulus guttatus]
          Length = 478

 Score =  547 bits (1410), Expect = e-153
 Identities = 294/476 (61%), Positives = 353/476 (74%), Gaps = 5/476 (1%)
 Frame = -3

Query: 1662 KYFLETRELKVAVGKGSADGLYRLLGNDTQSSNDKEKSASVISSLGMQASQYRLLMKNLD 1483
            K+   ++ ++VA+GKGS+D LY LL +D Q   +++K  ++ S    QAS+ RLLMKNLD
Sbjct: 4    KHVYVSKYIQVALGKGSSDSLYSLLDSDIQIPKNEDKLENLTSVQATQASKLRLLMKNLD 63

Query: 1482 MLEYMFTDSDVVRLERDILEHLQRLGALRLFDXXXXXXXXXXXXXXXXXSAPTENVDEPR 1303
            +LE MF DS+ VRLE DILE L+RLGALRLF                    PTE V+E +
Sbjct: 64   VLEDMFADSNAVRLEGDILEQLERLGALRLFHSCLSRTIKSYTSFDLSD-GPTEIVEECK 122

Query: 1302 LNDSIENHLGKAVIXXXXXXXXXXXXXXXXXXXSD-TLQEDXXXXXXXXXXXXR---NKK 1135
                +  H GK  +                      T+ +D                NK+
Sbjct: 123  ----VFVHSGKKELRKLRRKRTSDNESPTIQESPSKTISKDLQQLKFAIAGRTPRSRNKR 178

Query: 1134 LKVARNEAEMSSGVKMVAELEKLRMRLENDSGEMPSLSSWAEAAGVEKKELQRRLNYGWH 955
             K ARNEA+MSSGVK VAELEK+R +LE ++G++ SLS+WAEAAG++KKELQ+ L+YGWH
Sbjct: 179  QKTARNEADMSSGVKRVAELEKIRTKLEQETGQIASLSNWAEAAGIKKKELQQHLHYGWH 238

Query: 954  CRDELLTSTRSLVLFIARNYWGLGVAFEDLIQAGKVGVLQGAERFDQTRGYKFSTYVQYW 775
            CRDELL ST SLVLFIARNY GLGVAFEDLIQAG +GVLQGAERFDQ+RGYKFSTYVQYW
Sbjct: 239  CRDELLRSTHSLVLFIARNYSGLGVAFEDLIQAGNIGVLQGAERFDQSRGYKFSTYVQYW 298

Query: 774  VRKSMSTLVARHSRGIRIPSTLSKAVNQVHKARKALRRSNGTYPDDCEIAKFTGLSVAKI 595
            +RKSMSTLVA+H+RG+RIP TLSK +NQVHKARKAL  SNG YPDD EIAKFTGLSVAK+
Sbjct: 299  IRKSMSTLVAKHARGVRIPCTLSKVINQVHKARKALTTSNGKYPDDYEIAKFTGLSVAKV 358

Query: 594  ISASKCLRVVGSIDQKIGDF-NTKYMEIIPDTSTATPEEAVFRQHMIKDVYTLLDGLDSR 418
            +SASKCLRVVGSIDQKIG++  TKYMEI+ DTS  +PEEAV RQHM+ DV TLL+GL+ R
Sbjct: 359  MSASKCLRVVGSIDQKIGEYMTTKYMEILSDTSMPSPEEAVIRQHMLNDVSTLLNGLEPR 418

Query: 417  EREVIILRFGLGNCQCKSLEEIGKRFSVSKEWIRRIERTALTKMRNEESLKILNHY 250
            E++VIILRFGLGNCQCKSLEEIG+ F VSKEWIR+IER+AL K+RNE+SLKILNHY
Sbjct: 419  EKQVIILRFGLGNCQCKSLEEIGRLFRVSKEWIRKIERSALIKLRNEDSLKILNHY 474


>ref|XP_002275831.1| PREDICTED: RNA polymerase sigma factor rpoD [Vitis vinifera]
            gi|296081598|emb|CBI20603.3| unnamed protein product
            [Vitis vinifera]
          Length = 561

 Score =  466 bits (1199), Expect = e-128
 Identities = 263/559 (47%), Positives = 357/559 (63%), Gaps = 15/559 (2%)
 Frame = -3

Query: 1881 MGFRLNIKWGGXXXXXXXXXXXXXXXXXXSCRGRDSSYILARVSAASVLFSEAET--QND 1708
            MGFRLN+KW                    S +G+++S+   R S  SV   + E+  ++ 
Sbjct: 3    MGFRLNLKWD-FPISCPTLTNSPSRLCTSSVQGKEASFDSTRFSFPSVTSEDCESLYKDP 61

Query: 1707 TSRTQVSSSSHQLFEKYFLETRELKVAVGKGSADGLYRLLGNDTQSSNDKEKSASVISSL 1528
                  SS + Q FE  +     +K+ +GK S   L++++ N +Q+   ++ SASV    
Sbjct: 62   FKPFACSSGALQTFENDYSAMEAMKMKIGKCSHGDLFKIV-NASQAPIGEDISASVAGLQ 120

Query: 1527 GMQASQYRLLMKNLDMLEYMFTDSDVVRLERDILEHLQRLGALRLFDXXXXXXXXXXXXX 1348
              +ASQ+ LL++NLD+LE MF DS++VRLERDI+  L RLGAL+LF              
Sbjct: 121  ASKASQFSLLLENLDILEEMFADSNMVRLERDIMVQLGRLGALKLFQICLSRTLKTSTSF 180

Query: 1347 XXXXSAPTENVDEPRLNDSIENHLGKAVIXXXXXXXXXXXXXXXXXXXSD---------T 1195
                 APTE++ E + N ++++HL K V+                    +         T
Sbjct: 181  DLFS-APTEHIRECQTNGTVDDHLDKVVVRSGKKEERKSKRERALEKADNIYAFPLPSKT 239

Query: 1194 LQEDXXXXXXXXXXXXRN---KKLKVARNEAEMSSGVKMVAELEKLRMRLENDSGEMPSL 1024
            +++              N   K+L  A+NEAEMS GVK+VA LE++R  LE + G + SL
Sbjct: 240  IRKGPGRPSVSTVKRTLNSRRKRLMNAKNEAEMSKGVKLVANLERIRATLEEEIGHVASL 299

Query: 1023 SSWAEAAGVEKKELQRRLNYGWHCRDELLTSTRSLVLFIARNYWGLGVAFEDLIQAGKVG 844
            S+WAEAAGV+KK LQ++L +GW+CRDELL ST SLVL+IARNY G+GVAFED++QAG +G
Sbjct: 300  SNWAEAAGVDKKVLQQQLQFGWYCRDELLRSTHSLVLYIARNYRGMGVAFEDILQAGNLG 359

Query: 843  VLQGAERFDQTRGYKFSTYVQYWVRKSMSTLVARHSRGIRIPSTLSKAVNQVHKARKALR 664
            VLQGAERFD T+GY+FSTYVQYW+RKSMSTLVARH+RG++IP TL++A+ Q+ KARKAL 
Sbjct: 360  VLQGAERFDHTKGYRFSTYVQYWIRKSMSTLVARHARGVKIPFTLNRAIGQIQKARKALY 419

Query: 663  RSNGTYPDDCEIAKFTGLSVAKIISASKCLRVVGSIDQKIGD-FNTKYMEIIPDTSTATP 487
            +S+G YPDD EIAKFTGLS+AKI SA  CLRVVGS DQ   D +    +E  PDTS  +P
Sbjct: 420  KSHGRYPDDNEIAKFTGLSLAKIRSAGNCLRVVGSTDQSFQDCWGATILEFTPDTSIKSP 479

Query: 486  EEAVFRQHMIKDVYTLLDGLDSREREVIILRFGLGNCQCKSLEEIGKRFSVSKEWIRRIE 307
            EE   +Q   KD++ LL GLD RER++++LR+G G  Q KSLEEIG+RF+VSKEWIR++E
Sbjct: 480  EEGFMQQCKRKDIHNLLKGLDPRERQILVLRYGFGEQQRKSLEEIGRRFNVSKEWIRKLE 539

Query: 306  RTALTKMRNEESLKILNHY 250
            +TAL  +R+EE  + L HY
Sbjct: 540  KTALANLRDEEICQNLRHY 558


>ref|XP_006355305.1| PREDICTED: RNA polymerase sigma factor sigC-like [Solanum tuberosum]
          Length = 555

 Score =  461 bits (1187), Expect = e-127
 Identities = 266/560 (47%), Positives = 348/560 (62%), Gaps = 14/560 (2%)
 Frame = -3

Query: 1881 MGFRLNIKWGGXXXXXXXXXXXXXXXXXXSCRGRDSSYILARVSAASVLFSEAETQNDTS 1702
            MGFRL++KWG                   S +GR++ Y  AR     +      + +D  
Sbjct: 1    MGFRLHLKWG-FSVQPPFSSNSSSWPSSHSFKGREALYDPARSLKPFITGDCEPSHSDPF 59

Query: 1701 RTQVSSSSHQLFEKYFLETRELKVAVGKGSADGLYRLLGNDTQS-SNDKEKSASVISSLG 1525
            R Q   S  QL+      T E+K   G+GS   +Y  +G+     S D EK   + ++  
Sbjct: 60   RVQTCLSDPQLWTSDTSVTTEIKTRNGRGSPSNVYGDIGSHKIGISPDGEKPTYLNTTKS 119

Query: 1524 MQASQYRLLMKNLDMLEYMFTDSDVVRLERDILEHLQRLGALRLFDXXXXXXXXXXXXXX 1345
            +  S   LLMKNLD+LE MF DS++ RLERDIL  L++LGAL  F               
Sbjct: 120  LHFS---LLMKNLDLLENMFADSEMSRLERDILVQLEKLGALEFFHTCLSRTHHSSTFPK 176

Query: 1344 XXXSAPTENVDEPRLNDSIENHLGKAVIXXXXXXXXXXXXXXXXXXXSD---------TL 1192
                 P E + E   +D + N + K V+                   +D          +
Sbjct: 177  VLD-VPRELIKEVEKDDLVGNAIDKVVVRSRKKQERKSRRNRASRNANDIITVQPHTKNI 235

Query: 1191 QEDXXXXXXXXXXXXR---NKKLKVARNEAEMSSGVKMVAELEKLRMRLENDSGEMPSLS 1021
            QED            +   NK+ K+A+NEAEMS GVK+VA+LE++R  LE ++G + + S
Sbjct: 236  QEDLQQPKFYSGKRTQASRNKRQKIAKNEAEMSRGVKLVAQLERIRSILEEETGRVATFS 295

Query: 1020 SWAEAAGVEKKELQRRLNYGWHCRDELLTSTRSLVLFIARNYWGLGVAFEDLIQAGKVGV 841
            SWAEAAG+E+KELQ+RL++GW+CRDELL STRSLVL++ARNY GLGVAFEDLIQAG +GV
Sbjct: 296  SWAEAAGIEQKELQQRLHFGWYCRDELLKSTRSLVLYLARNYRGLGVAFEDLIQAGNMGV 355

Query: 840  LQGAERFDQTRGYKFSTYVQYWVRKSMSTLVARHSRGIRIPSTLSKAVNQVHKARKALRR 661
            LQGA RFD TRGYKFSTYVQYW+RKS+S LVA+H+RG+RIP T+ K +NQ+HKARK L R
Sbjct: 356  LQGAVRFDHTRGYKFSTYVQYWIRKSLSKLVAQHARGVRIPFTICKVINQIHKARKTLSR 415

Query: 660  SNGTYPDDCEIAKFTGLSVAKIISASKCLRVVGSIDQKIGD-FNTKYMEIIPDTSTATPE 484
            S+G +P D EIAKFTGLS A+I  ASKCLRVVGSIDQK+GD  + K +E+ PD S  +PE
Sbjct: 416  SHGKFPADDEIAKFTGLSTARIAMASKCLRVVGSIDQKVGDCISAKVLELTPDKSITSPE 475

Query: 483  EAVFRQHMIKDVYTLLDGLDSREREVIILRFGLGNCQCKSLEEIGKRFSVSKEWIRRIER 304
            E V RQ ++ ++Y+LL+ LD +E++VI  RFGL   Q KSLEEIG+ + VSKEWIRRIER
Sbjct: 476  ETVMRQDIVDNMYSLLESLDPKEQQVIYFRFGLETHQRKSLEEIGRLYGVSKEWIRRIER 535

Query: 303  TALTKMRNEESLKILNHYYM 244
             ALTK+RN +  + + HY M
Sbjct: 536  RALTKLRNADYFQHITHYSM 555


>emb|CAN83254.1| hypothetical protein VITISV_036980 [Vitis vinifera]
          Length = 611

 Score =  459 bits (1182), Expect = e-126
 Identities = 254/528 (48%), Positives = 347/528 (65%), Gaps = 15/528 (2%)
 Frame = -3

Query: 1788 RGRDSSYILARVSAASVLFSEAET--QNDTSRTQVSSSSHQLFEKYFLETRELKVAVGKG 1615
            +G+++S+   R S  SV   + E+  ++       SS + Q FE  +     +K+ +GK 
Sbjct: 83   QGKEASFDSTRFSFPSVTSEDCESLYKDPFKPFACSSGALQTFENDYSAMEAMKMKIGKC 142

Query: 1614 SADGLYRLLGNDTQSSNDKEKSASVISSLGMQASQYRLLMKNLDMLEYMFTDSDVVRLER 1435
            S   L++++ N +Q+   ++ SASV      +ASQ+ LL++NLD+LE MF DS++VRLER
Sbjct: 143  SHGDLFKIV-NASQAPIGEDISASVAGLQASKASQFSLLLENLDILEEMFADSNMVRLER 201

Query: 1434 DILEHLQRLGALRLFDXXXXXXXXXXXXXXXXXSAPTENVDEPRLNDSIENHLGKAVIXX 1255
            DI+  L RLGAL+LF                   APTE++ E + N ++++HL K V+  
Sbjct: 202  DIMVQLGRLGALKLFQICLSRTLKTSTSFDLFS-APTEHIRECQTNGTVDDHLDKVVVRS 260

Query: 1254 XXXXXXXXXXXXXXXXXSD---------TLQEDXXXXXXXXXXXXRN---KKLKVARNEA 1111
                              +         T+++              N   K+L  A+NEA
Sbjct: 261  GKKEERKSKRERALEKADNIYAFPLPSKTIRKGPGRPSVSTVKRTLNSRRKRLMNAKNEA 320

Query: 1110 EMSSGVKMVAELEKLRMRLENDSGEMPSLSSWAEAAGVEKKELQRRLNYGWHCRDELLTS 931
            EMS GVK+VA LE++R  LE + G + SLS+WAEAAGV+KK LQ++L +GW+CRDELL S
Sbjct: 321  EMSKGVKLVANLERIRATLEEEIGHVASLSNWAEAAGVDKKVLQQQLQFGWYCRDELLRS 380

Query: 930  TRSLVLFIARNYWGLGVAFEDLIQAGKVGVLQGAERFDQTRGYKFSTYVQYWVRKSMSTL 751
            T SLVL+IARNY G+GVAFED++QAG +GVLQGAERFD T+GY+FSTYVQYW+RKSMSTL
Sbjct: 381  THSLVLYIARNYRGMGVAFEDILQAGNLGVLQGAERFDHTKGYRFSTYVQYWIRKSMSTL 440

Query: 750  VARHSRGIRIPSTLSKAVNQVHKARKALRRSNGTYPDDCEIAKFTGLSVAKIISASKCLR 571
            VARH+RG++IP TL++A+ Q+ KARKAL +S+G YPDD EIAKFTGLS+AKI SA  CLR
Sbjct: 441  VARHARGVKIPFTLNRAIGQIQKARKALYKSHGRYPDDNEIAKFTGLSLAKIRSAGNCLR 500

Query: 570  VVGSIDQKIGD-FNTKYMEIIPDTSTATPEEAVFRQHMIKDVYTLLDGLDSREREVIILR 394
            VVGS DQ   D +    +E  PDTS  +PEE   +Q   KD++ LL GLD RER++++LR
Sbjct: 501  VVGSTDQSFQDCWGATILEFTPDTSIKSPEEGFMQQCKRKDIHNLLKGLDPRERQILVLR 560

Query: 393  FGLGNCQCKSLEEIGKRFSVSKEWIRRIERTALTKMRNEESLKILNHY 250
            +G G  Q KSLEEIG+RF+VSKEWIR++E+TAL  +R+EE  + L HY
Sbjct: 561  YGFGEQQRKSLEEIGRRFNVSKEWIRKLEKTALANLRDEEICQNLRHY 608


>ref|XP_004245130.1| PREDICTED: RNA polymerase sigma factor sigC-like [Solanum
            lycopersicum]
          Length = 551

 Score =  452 bits (1162), Expect = e-124
 Identities = 260/557 (46%), Positives = 341/557 (61%), Gaps = 13/557 (2%)
 Frame = -3

Query: 1881 MGFRLNIKWGGXXXXXXXXXXXXXXXXXXSCRGRDSSYILARVSAASVLFSEAETQNDTS 1702
            MGFRL++KWG                   S +GR++ Y  AR     +      + +D  
Sbjct: 1    MGFRLHLKWG-FSLQPPFSSNSSSWPSSHSFKGRETLYDPARSLKPFINGDCEPSHSDPF 59

Query: 1701 RTQVSSSSHQLFEKYFLETRELKVAVGKGSADGLYRLLGNDTQSSNDKEKSASVISSLGM 1522
            R Q   S  QL+      T E K   G+GS   +Y  +G+  +   +K    +   SL  
Sbjct: 60   RVQTCLSDPQLWTSDASVTTETKTRNGRGSPSNVYGDIGS-YKIDGEKPTYLNTTKSL-- 116

Query: 1521 QASQYRLLMKNLDMLEYMFTDSDVVRLERDILEHLQRLGALRLFDXXXXXXXXXXXXXXX 1342
                + LLMKNLD+LE MF DS++ RLERDIL  L++LGAL  F                
Sbjct: 117  ---HFSLLMKNLDLLENMFADSEMSRLERDILVQLEKLGALEFFHTCLSRTHHSSSFPKV 173

Query: 1341 XXSAPTENVDEPRLNDSIENHLGKAVIXXXXXXXXXXXXXXXXXXXSD---------TLQ 1189
                P E + E   +D + N + K V+                   +D          +Q
Sbjct: 174  LD-VPRELIKEVEKDDLVGNAMDKVVVRSRKKQERMSRRKRASRNANDIITVQPHTKNIQ 232

Query: 1188 EDXXXXXXXXXXXXR---NKKLKVARNEAEMSSGVKMVAELEKLRMRLENDSGEMPSLSS 1018
            ED                 K+ K+A+NEAEMS GVK+VA+LE++R  LE ++G++ + SS
Sbjct: 233  EDLQQLKFYSGKRTHASRTKRQKIAKNEAEMSKGVKLVAQLERIRSILEEETGQVATFSS 292

Query: 1017 WAEAAGVEKKELQRRLNYGWHCRDELLTSTRSLVLFIARNYWGLGVAFEDLIQAGKVGVL 838
            WA+AAG+E+KELQ+ L++GW+CRDELL STRSLVL++ARNY GLGVAFEDLIQAG +GVL
Sbjct: 293  WAKAAGIEQKELQQHLHFGWYCRDELLKSTRSLVLYLARNYRGLGVAFEDLIQAGNMGVL 352

Query: 837  QGAERFDQTRGYKFSTYVQYWVRKSMSTLVARHSRGIRIPSTLSKAVNQVHKARKALRRS 658
            QGA RFD TRGYKFSTYVQYW+RKS+S LVA+H+RG+RIP T+ K +NQ+HKARK L RS
Sbjct: 353  QGAVRFDHTRGYKFSTYVQYWIRKSLSKLVAQHARGVRIPFTICKVINQIHKARKTLSRS 412

Query: 657  NGTYPDDCEIAKFTGLSVAKIISASKCLRVVGSIDQKIGD-FNTKYMEIIPDTSTATPEE 481
            +G +P D EIAKFTGLS A+I  ASKCLRVVGSIDQK+GD  N K +E+ PD S  +PEE
Sbjct: 413  HGKFPADDEIAKFTGLSTARIAMASKCLRVVGSIDQKVGDCINAKVLELTPDKSVTSPEE 472

Query: 480  AVFRQHMIKDVYTLLDGLDSREREVIILRFGLGNCQCKSLEEIGKRFSVSKEWIRRIERT 301
             V RQ ++ ++Y LL+ LD +E++VI  RFGL   Q KSLEEIG+ + VSKEWIRRIER 
Sbjct: 473  FVMRQDIVDNMYALLESLDPKEQQVIYFRFGLETHQRKSLEEIGRLYGVSKEWIRRIERR 532

Query: 300  ALTKMRNEESLKILNHY 250
            ALTK+R+ +  + + HY
Sbjct: 533  ALTKLRSADYFQHITHY 549


>ref|XP_006450763.1| hypothetical protein CICLE_v10007968mg [Citrus clementina]
            gi|557553989|gb|ESR64003.1| hypothetical protein
            CICLE_v10007968mg [Citrus clementina]
          Length = 534

 Score =  444 bits (1142), Expect = e-122
 Identities = 249/559 (44%), Positives = 344/559 (61%), Gaps = 15/559 (2%)
 Frame = -3

Query: 1881 MGFRLNIKWGGXXXXXXXXXXXXXXXXXXSCRGRDSSYILARVSAASVLFSEAET--QND 1708
            MGFRLN+KW                      RGR+ S+  AR+S  S +  ++ +  Q+ 
Sbjct: 3    MGFRLNLKWVSPVQSHFFTTSSCRLSSTSV-RGREGSFNSARLSFLSTISEDSASYFQDP 61

Query: 1707 TSRTQVSSSSHQLFEKYFLETRELKVAVGKGSADGLYRLLGNDTQSSNDKEKSASVISSL 1528
                  S  + Q  E  + ET E++                         +KS S I   
Sbjct: 62   VKAYTCSFVNTQTVENDYSETEEIR-------------------------QKSTSCIGQD 96

Query: 1527 GMQASQYRLLMKNLDMLEYMFTDSDVVRLERDILEHLQRLGALRLFDXXXXXXXXXXXXX 1348
                S +RLLM+NLD+LE  F DSD +RLER+IL+ L +LGAL+LF+             
Sbjct: 97   ASSRSDFRLLMENLDVLESTFADSDALRLEREILQQLGKLGALKLFNSHLSRIVKTSNVL 156

Query: 1347 XXXXSAPTENVDEPRLNDSIENHLGKAVIXXXXXXXXXXXXXXXXXXXSDT--------- 1195
                     + +E ++NDS + H+GK ++                    +T         
Sbjct: 157  DLSDV----HTEEQKMNDSRDYHMGKILVPSKRKGKRKLKTARVSEESIETSLLSLPSEA 212

Query: 1194 LQEDXXXXXXXXXXXXRN---KKLKVARNEAEMSSGVKMVAELEKLRMRLENDSGEMPSL 1024
            LQE              N   ++L +ARNEAEMS GV++VA LE+++  LE +SG+  SL
Sbjct: 213  LQEGLKQPTIFSPERALNSRGRRLMIARNEAEMSKGVQVVANLERIKTTLEKESGKAASL 272

Query: 1023 SSWAEAAGVEKKELQRRLNYGWHCRDELLTSTRSLVLFIARNYWGLGVAFEDLIQAGKVG 844
            + WA+AAGV ++ L++ L +GW+CR+EL+ STR LVLF+ARNY GLG+ F DL+QAG VG
Sbjct: 273  NCWAQAAGVSERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVG 332

Query: 843  VLQGAERFDQTRGYKFSTYVQYWVRKSMSTLVARHSRGIRIPSTLSKAVNQVHKARKALR 664
            VLQGAERFD TRGYKFSTYVQYW+RKS+S +VARH+RGI+IP  L++ ++++ KARKAL 
Sbjct: 333  VLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALT 392

Query: 663  RSNGTYPDDCEIAKFTGLSVAKIISASKCLRVVGSIDQKIGD-FNTKYMEIIPDTSTATP 487
             S+G YP+D EIAK+TGLS+A+I SAS+CLR+VGSIDQKIGD  N KY+E  PD S  +P
Sbjct: 393  NSHGKYPEDIEIAKYTGLSLAEIRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSP 452

Query: 486  EEAVFRQHMIKDVYTLLDGLDSREREVIILRFGLGNCQCKSLEEIGKRFSVSKEWIRRIE 307
            +E V RQHM KDV+ +L+ LDSRER+V++LR+GL + + KSLEEIGK F VSKEWIR++E
Sbjct: 453  KEIVMRQHMKKDVFRILESLDSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLE 512

Query: 306  RTALTKMRNEESLKILNHY 250
            + A+TK+R+ E+ + L+H+
Sbjct: 513  KKAMTKLRDSETCRDLSHF 531


>ref|XP_004291147.1| PREDICTED: RNA polymerase sigma factor sigC-like [Fragaria vesca
            subsp. vesca]
          Length = 545

 Score =  442 bits (1138), Expect = e-121
 Identities = 255/553 (46%), Positives = 349/553 (63%), Gaps = 6/553 (1%)
 Frame = -3

Query: 1881 MGFRLNIKWGGXXXXXXXXXXXXXXXXXXSCRGRDSSYILARVSAASVLFSEAETQNDTS 1702
            +GFRLN+K G                   S RGR+ S+  A +S  SV+  E ET +   
Sbjct: 3    LGFRLNLKCGFPIHNSHWQTNSPSKLPSSSVRGREGSFSSAGLSFLSVISEECETSSKDP 62

Query: 1701 RTQVS--SSSHQLFEKYFLETRELKVAVGKGSADGLYRLLGNDTQSSNDKEKSASVISSL 1528
                +  S+S QL +    E  E K+   + S  G   ++          +K  S +SS 
Sbjct: 63   LKVYTCPSASPQLLDDGLSEMEE-KMNPRRMSKSGSANMID---------DKEYSFMSSA 112

Query: 1527 GMQASQYRLLMKNLDMLEYMFTDSDVVRLERDILEHLQRLGALRLFDXXXXXXXXXXXXX 1348
            G++ S Y LL++NL++LE  F DS V +LE++IL  L RLGAL+LF+             
Sbjct: 113  GLRTSHYTLLLQNLNVLEETFADSGVSKLEKEILLQLGRLGALKLFEICLSRTLKTSSFL 172

Query: 1347 XXXXSAPTENVDEPRLNDSIENHLGKAVIXXXXXXXXXXXXXXXXXXXSDTLQEDXXXXX 1168
                  PTE +++ +         GK                         ++E      
Sbjct: 173  DLSDI-PTEPIEKHKTERKNIVRSGKKEEQKSRKRTSYDSKKFSGTLPVKQMREGFKKPN 231

Query: 1167 XXXXXXXRN---KKLKVARNEAEMSSGVKMVAELEKLRMRLENDSGEMPSLSSWAEAAGV 997
                    N   ++L +A+NEAEMS GVK++A+LE+L++ LE ++G++P+L  WAEAAGV
Sbjct: 232  PSSVRRASNSRSRRLMMAKNEAEMSVGVKVIADLERLKVTLEKETGKVPTLRCWAEAAGV 291

Query: 996  EKKELQRRLNYGWHCRDELLTSTRSLVLFIARNYWGLGVAFEDLIQAGKVGVLQGAERFD 817
            ++K LQ++L++GW+C+DEL+ STRSLVL++ARNY GLGVA +DL+QAG +G+LQGAERFD
Sbjct: 292  DEKVLQQQLHFGWYCQDELVRSTRSLVLYLARNYRGLGVALDDLLQAGNLGLLQGAERFD 351

Query: 816  QTRGYKFSTYVQYWVRKSMSTLVARHSRGIRIPSTLSKAVNQVHKARKALRRSNGTYPDD 637
             +RGY+FSTYVQYW+RKSMS LVA+H+RGI+IP+TLSKA+N++ KARKA   S+  YPDD
Sbjct: 352  PSRGYRFSTYVQYWIRKSMSRLVAQHARGIKIPNTLSKAINRIQKARKANYNSHMKYPDD 411

Query: 636  CEIAKFTGLSVAKIISASKCLRVVGSIDQKIGDFNT-KYMEIIPDTSTATPEEAVFRQHM 460
             EIAK TGLS+AKI SAS+CLRVVGS+D KI + +   YME  PD +  TPEE+V RQHM
Sbjct: 412  EEIAKITGLSLAKISSASRCLRVVGSVDHKIWECSAGTYMEFTPDIAVETPEESVMRQHM 471

Query: 459  IKDVYTLLDGLDSREREVIILRFGLGNCQCKSLEEIGKRFSVSKEWIRRIERTALTKMRN 280
              D++ LL+GL+SRE++V+ LR+GL  C  KSLEEIG+ F VSKEWIR+IE+ ALTK+RN
Sbjct: 472  KNDIHVLLEGLNSREKKVLALRYGLNYCNPKSLEEIGRLFHVSKEWIRKIEKNALTKLRN 531

Query: 279  EESLKILNHYYMQ 241
            EES K L+HY  Q
Sbjct: 532  EESNKNLSHYLKQ 544


>ref|XP_002516489.1| RNA polymerase sigma factor rpoD, putative [Ricinus communis]
            gi|223544309|gb|EEF45830.1| RNA polymerase sigma factor
            rpoD, putative [Ricinus communis]
          Length = 560

 Score =  441 bits (1133), Expect = e-121
 Identities = 256/558 (45%), Positives = 345/558 (61%), Gaps = 15/558 (2%)
 Frame = -3

Query: 1878 GFRLNIKWGGXXXXXXXXXXXXXXXXXXSCRGRDSSYILARVSAASVLFSEAE-TQNDTS 1702
            GFRLN+K                       RGR+++   +R+S  SV+  E +    D  
Sbjct: 4    GFRLNLKLDFPFHSPNSPSRLSSSPSSSFVRGREATSYQSRLSFLSVISEEGDIAHRDPL 63

Query: 1701 RTQVSSSSHQLFEKYFLETRELKVAVGKGSADGLYRLLGNDTQSSNDKEKSASVISSLGM 1522
            +T   S + Q  E    +    KV  GK S  GL  ++G+   S   KE      SS   
Sbjct: 64   KTYAYSYAVQTVENEHSQGEGFKVNFGKRSHFGL-NIIGDAEVSL--KEDIFVSPSSTKE 120

Query: 1521 QASQYRLLMKNLDMLEYMFTDSDVVRLERDILEHLQRLGALRLFDXXXXXXXXXXXXXXX 1342
            + S++ LL++NL++LE  F DSD  +LE DIL  L +LGAL+LF+               
Sbjct: 121  RTSRFSLLLENLNILEQSFADSDASKLEEDILLQLGKLGALKLFNTCLTRTLETTNVLEV 180

Query: 1341 XXSAPTENVDEPRLNDSIENHLGKAVIXXXXXXXXXXXXXXXXXXXS------------- 1201
                 TE + E  +N +  N+  K V+                                 
Sbjct: 181  SD-VHTEIIGECNINGTSINNQIKVVVHTAKKEERKSRRERASARKGHKSPSLPLPSRPI 239

Query: 1200 DTLQEDXXXXXXXXXXXXRNKKLKVARNEAEMSSGVKMVAELEKLRMRLENDSGEMPSLS 1021
             +  E             ++++L +ARNEAEM+ G+K++A+LEK+R  LE ++  + SLS
Sbjct: 240  QSGSEKPTVSSGKKASKSKSRRLIIARNEAEMARGIKVLADLEKIRTTLEEETERVVSLS 299

Query: 1020 SWAEAAGVEKKELQRRLNYGWHCRDELLTSTRSLVLFIARNYWGLGVAFEDLIQAGKVGV 841
             WAEAAG++ K LQ++L++GW+CRDEL+ STRSLVL+ ARNY G G+A EDL+QAG +GV
Sbjct: 300  CWAEAAGLDVKVLQQQLSFGWYCRDELIKSTRSLVLYFARNYRGTGIALEDLLQAGNLGV 359

Query: 840  LQGAERFDQTRGYKFSTYVQYWVRKSMSTLVARHSRGIRIPSTLSKAVNQVHKARKALRR 661
            L+GAERFD TRGY+FSTYVQYW+RKSMS +V+R +RGI+IP TLS+A+ Q+ KARKAL  
Sbjct: 360  LEGAERFDHTRGYRFSTYVQYWIRKSMSKIVSRLARGIQIPCTLSRAIYQIQKARKALTT 419

Query: 660  SNGTYPDDCEIAKFTGLSVAKIISASKCLRVVGSIDQKIGD-FNTKYMEIIPDTSTATPE 484
            SNG YPDD EIAK+TGLS+AKI SAS+CLRVVGSIDQKIG+  N KY+E +PDTS  +PE
Sbjct: 420  SNGKYPDDDEIAKYTGLSLAKIESASRCLRVVGSIDQKIGESLNAKYLEFLPDTSVQSPE 479

Query: 483  EAVFRQHMIKDVYTLLDGLDSREREVIILRFGLGNCQCKSLEEIGKRFSVSKEWIRRIER 304
            E V RQHMI+D++ LL  LDSRER+V+ILRFGL + Q KSLEEIG+ F VSKEW+RR+E+
Sbjct: 480  EVVMRQHMIQDMHNLLRSLDSRERQVLILRFGLNDYQPKSLEEIGRHFHVSKEWVRRLEK 539

Query: 303  TALTKMRNEESLKILNHY 250
              +T++RNEE+ + L HY
Sbjct: 540  RVMTRLRNEETCRNLRHY 557


>ref|XP_006475980.1| PREDICTED: RNA polymerase sigma factor sigC-like [Citrus sinensis]
          Length = 534

 Score =  440 bits (1132), Expect = e-120
 Identities = 247/559 (44%), Positives = 343/559 (61%), Gaps = 15/559 (2%)
 Frame = -3

Query: 1881 MGFRLNIKWGGXXXXXXXXXXXXXXXXXXSCRGRDSSYILARVSAASVLFSEAET--QND 1708
            MGFRLN+KW                      RGR+ S+  AR+S  S +  ++ +  Q+ 
Sbjct: 3    MGFRLNLKWVSPVQSHFFTTSSCRLSSTSV-RGREGSFNSARLSFLSTISEDSASYFQDP 61

Query: 1707 TSRTQVSSSSHQLFEKYFLETRELKVAVGKGSADGLYRLLGNDTQSSNDKEKSASVISSL 1528
                  S  + Q  E  + ET E++                         +KS S I   
Sbjct: 62   VKAYTCSFVNTQTVENDYSETEEIR-------------------------QKSTSCIGQD 96

Query: 1527 GMQASQYRLLMKNLDMLEYMFTDSDVVRLERDILEHLQRLGALRLFDXXXXXXXXXXXXX 1348
                S +RLLM+NLD+LE  F DSD +RLER+IL+ L +LGAL+LF+             
Sbjct: 97   ASSRSDFRLLMENLDVLESTFADSDALRLEREILQQLGKLGALKLFNSHLSRIVKTSNVL 156

Query: 1347 XXXXSAPTENVDEPRLNDSIENHLGKAVIXXXXXXXXXXXXXXXXXXXSDT--------- 1195
                     + +E +++DS + H+GK ++                    +T         
Sbjct: 157  DLSDV----HTEEQKMDDSRDYHMGKILVPSKRKGKRKLKTARVSEESIETYLLSLPSEA 212

Query: 1194 LQEDXXXXXXXXXXXXRN---KKLKVARNEAEMSSGVKMVAELEKLRMRLENDSGEMPSL 1024
            LQE              N   ++L +ARNEAEMS GV++VA LE+++  LE +SG+   L
Sbjct: 213  LQEGLKQPTIFSAERALNSRGRRLMIARNEAEMSKGVQVVANLERIKTTLEKESGKAARL 272

Query: 1023 SSWAEAAGVEKKELQRRLNYGWHCRDELLTSTRSLVLFIARNYWGLGVAFEDLIQAGKVG 844
            + WA+AAGV ++ L++ L +GW+CR+EL+ STR LVLF+ARNY GLG+ F DL+QAG VG
Sbjct: 273  NCWAQAAGVSERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVG 332

Query: 843  VLQGAERFDQTRGYKFSTYVQYWVRKSMSTLVARHSRGIRIPSTLSKAVNQVHKARKALR 664
            VLQGAERFD TRGYKFSTYVQYW+RKS+S +VARH+RGI+IP  L++ ++++ KARKAL 
Sbjct: 333  VLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALT 392

Query: 663  RSNGTYPDDCEIAKFTGLSVAKIISASKCLRVVGSIDQKIGD-FNTKYMEIIPDTSTATP 487
             S+G YP+D EIAK+TGLS+A+I SAS+CLR+VGSIDQKIGD  N KY+E  PD S  +P
Sbjct: 393  NSHGKYPEDIEIAKYTGLSLAEIRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSP 452

Query: 486  EEAVFRQHMIKDVYTLLDGLDSREREVIILRFGLGNCQCKSLEEIGKRFSVSKEWIRRIE 307
            +E V RQHM KDV+ +L+ LDSRER+V++LR+GL + + KSLEEIGK F VSKEWIR++E
Sbjct: 453  KEIVMRQHMKKDVFRILESLDSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLE 512

Query: 306  RTALTKMRNEESLKILNHY 250
            + A+TK+R+ E+ + L+H+
Sbjct: 513  KKAMTKLRDSETCRDLSHF 531


>ref|XP_007222923.1| hypothetical protein PRUPE_ppa003696mg [Prunus persica]
            gi|462419859|gb|EMJ24122.1| hypothetical protein
            PRUPE_ppa003696mg [Prunus persica]
          Length = 555

 Score =  427 bits (1097), Expect = e-116
 Identities = 249/560 (44%), Positives = 343/560 (61%), Gaps = 16/560 (2%)
 Frame = -3

Query: 1881 MGFRLNIKWGGXXXXXXXXXXXXXXXXXXSCRGRDSSYILARVSAASVLFSEAETQNDTS 1702
            +GFRLN+K G                   S RGR+ S+  AR+S  SV+  E E  +   
Sbjct: 3    LGFRLNLKCGFPVHSSHWQTTSPSKISSTSVRGREGSFNSARLSFLSVISEEGEASSKDP 62

Query: 1701 RTQVS--SSSHQLFEKYFLETRELKVAVGKGSADGLYRLLGNDTQSSNDKEKSASVISSL 1528
                +  S+S Q+ E    E  E+K A         +R +      +         ISS 
Sbjct: 63   LKVYTFPSASPQILEDGVSELEEVKTA---------FRRVPKSFSDNQMPVAEGKFISSK 113

Query: 1527 GMQA---SQYRLLMKNLDMLEYMFTDSDVVRLERDILEHLQRLGALRLFDXXXXXXXXXX 1357
            G++A   S + LL++NL++LE  F  SDV++LE++IL  L RLGAL+LFD          
Sbjct: 114  GLEACTASHFSLLLQNLNVLEETFATSDVLKLEKEILLQLARLGALKLFDICLSRTLKTS 173

Query: 1356 XXXXXXXSAPTENVDEPRLNDSIENHLGKAVIXXXXXXXXXXXXXXXXXXXSD------- 1198
                     PT  V+E ++    +N++G+ ++                            
Sbjct: 174  SFLDLSDI-PTVPVEEGKMERKEDNNVGEIIVRSGKKEERRSRKRTSDNAIVSSNSLPPK 232

Query: 1197 TLQEDXXXXXXXXXXXXRN---KKLKVARNEAEMSSGVKMVAELEKLRMRLENDSGEMPS 1027
            T+ +              N   ++L +++NEAEMS GVK++A+LE+++  LE ++G++ +
Sbjct: 233  TIWKGLKKPTLSSGKRASNYRSRRLTISKNEAEMSIGVKVIADLERIKETLEKETGKVAT 292

Query: 1026 LSSWAEAAGVEKKELQRRLNYGWHCRDELLTSTRSLVLFIARNYWGLGVAFEDLIQAGKV 847
            L  WAEAAGV +K L + L +GW+C+DEL+ STRSLVL++ARNY GLGVA +DL+QAG +
Sbjct: 293  LRCWAEAAGVHEKVLLQHLRFGWYCQDELIRSTRSLVLYLARNYRGLGVALDDLMQAGNL 352

Query: 846  GVLQGAERFDQTRGYKFSTYVQYWVRKSMSTLVARHSRGIRIPSTLSKAVNQVHKARKAL 667
            G+LQGAERFD +RGY+FSTYVQYW+RKSMS LVA+H+RG++IP TLSKA+NQ+ KARKA 
Sbjct: 353  GLLQGAERFDHSRGYRFSTYVQYWIRKSMSRLVAQHARGVQIPFTLSKAINQIQKARKAN 412

Query: 666  RRSNGTYPDDCEIAKFTGLSVAKIISASKCLRVVGSIDQKIGDFNT-KYMEIIPDTSTAT 490
              S+  YPDD EIAK TGLS+A+I SAS CLRVVGS+D K+ + +   YME  PDTS  +
Sbjct: 413  YNSHMKYPDDEEIAKITGLSLARIRSASTCLRVVGSVDHKMWESSDGTYMEFTPDTSLKS 472

Query: 489  PEEAVFRQHMIKDVYTLLDGLDSREREVIILRFGLGNCQCKSLEEIGKRFSVSKEWIRRI 310
            PEE V RQHM KD++ LL GL+ RER+V++LR+GL N   KSLEEIG+ F VSKEWIR+I
Sbjct: 473  PEETVMRQHMKKDIHDLLKGLNLRERQVLVLRYGLNNYDPKSLEEIGRLFHVSKEWIRKI 532

Query: 309  ERTALTKMRNEESLKILNHY 250
            E+ AL K+R EES K L+HY
Sbjct: 533  EKKALMKLRVEESHKYLSHY 552


>ref|XP_002308586.1| hypothetical protein POPTR_0006s25090g [Populus trichocarpa]
            gi|222854562|gb|EEE92109.1| hypothetical protein
            POPTR_0006s25090g [Populus trichocarpa]
          Length = 559

 Score =  416 bits (1069), Expect = e-113
 Identities = 244/557 (43%), Positives = 335/557 (60%), Gaps = 13/557 (2%)
 Frame = -3

Query: 1881 MGFRLNIKWGGXXXXXXXXXXXXXXXXXXSCRGRDSSYILARVSAASVLFSEAETQNDTS 1702
            +GFRL  KWG                     RG ++S   AR+S  SV+  E +  N  S
Sbjct: 3    VGFRLTPKWGSPMQSHSATNSTSMFSSFS-ARGMEASVNQARLSFLSVVSEEGDILNKHS 61

Query: 1701 -RTQVSSSSHQLFEKYFLETRELKVAVGKGSADGLYRLLGNDTQSSNDKEKSASVISSLG 1525
             ++   SS+ Q  E   L+   LK+ V K S   +  ++GND + S ++E S S      
Sbjct: 62   FKSFACSSAAQNVENDCLQMERLKMNVDKTSHVSINNMMGND-KVSVEEEISTSHTRLRE 120

Query: 1524 MQASQYRLLMKNLDMLEYMFTDSDVVRLERDILEHLQRLGALRLFDXXXXXXXXXXXXXX 1345
               S+   L+ NLD LE +  D D ++LERDIL  L RLGAL  F+              
Sbjct: 121  RMTSRISFLLDNLDTLEKLVADLDALKLERDILLQLGRLGALEFFNACLSRTLQTSNVLD 180

Query: 1344 XXXSAPTENVDEPRLNDSIENHLGKAVIXXXXXXXXXXXXXXXXXXXSD----------T 1195
                 PTEN  E + +  + +  GK V+                               T
Sbjct: 181  LSA-VPTENTGESKTDGMLGDLTGKTVVRTGKKEERKFRRERAASDNGKKTTSLSLPSKT 239

Query: 1194 LQEDXXXXXXXXXXXXRNKKLK-VARNEAEMSSGVKMVAELEKLRMRLENDSGEMPSLSS 1018
            +Q +             + +   +ARNEA+M+ GVK+ ++LE++R  LE ++G++ SLS 
Sbjct: 240  VQNNLPKPTFVKRTSSSSSRRSLIARNEAKMTRGVKVASDLERIRTTLEEETGQVVSLSC 299

Query: 1017 WAEAAGVEKKELQRRLNYGWHCRDELLTSTRSLVLFIARNYWGLGVAFEDLIQAGKVGVL 838
            WAEA G++KK LQ++L +GW+CRDEL+ +T SLVL+IARNY G+G+A EDLIQAG +G+L
Sbjct: 300  WAEATGLDKKVLQQQLQFGWYCRDELIKNTHSLVLYIARNYRGMGIAMEDLIQAGNLGLL 359

Query: 837  QGAERFDQTRGYKFSTYVQYWVRKSMSTLVARHSRGIRIPSTLSKAVNQVHKARKALRRS 658
            QGAERFD TRGY+FSTYVQYW+RKSM  +V RH+RGI+IP  LS+++N++ KARKAL  S
Sbjct: 360  QGAERFDPTRGYRFSTYVQYWIRKSMLKIVERHARGIQIPYALSRSINKIQKARKALSNS 419

Query: 657  NGTYPDDCEIAKFTGLSVAKIISASKCLRVVGSIDQKIGDFN-TKYMEIIPDTSTATPEE 481
            +G YPDD E+AKFTGLS+AKI SA KCLRVV S+DQKIG+ +  KY E IPD S   PEE
Sbjct: 420  HGRYPDDWEVAKFTGLSLAKIESAQKCLRVVASLDQKIGEGHYAKYSEFIPDMSIQNPEE 479

Query: 480  AVFRQHMIKDVYTLLDGLDSREREVIILRFGLGNCQCKSLEEIGKRFSVSKEWIRRIERT 301
            AV RQHM +++Y LL GLDSRE++V++LR+G  + Q KSL EIG+ F VSKE +R+IE+ 
Sbjct: 480  AVMRQHMREEIYDLLRGLDSREKQVMVLRYGFKDNQPKSLAEIGRLFRVSKERVRKIEKK 539

Query: 300  ALTKMRNEESLKILNHY 250
             + K+R+E   + L+ Y
Sbjct: 540  IMIKLRDEGIRRNLSRY 556


>emb|CAD20832.1| sigma factor [Spinacia oleracea]
          Length = 548

 Score =  406 bits (1043), Expect = e-110
 Identities = 233/526 (44%), Positives = 324/526 (61%), Gaps = 13/526 (2%)
 Frame = -3

Query: 1788 RGRDSSYILARVSAASVLFSEAET-QNDTSRTQVSSSSHQLFEKYFLETRELKVAVGKGS 1612
            RG++  +  AR+S  ++ F E+ET + DT R    SSS  L  +   +   L+  + K S
Sbjct: 34   RGKELDFGSARLSLLTIGFDESETLRKDTLRPHAGSSSVPLTVEN--DYSNLETTISKRS 91

Query: 1611 ADGLYRLLGNDTQSSNDKEKSASVISSLGMQASQYRLLMKNLDMLEYMFTDSDVVRLERD 1432
               L     +DT+  +D++ S  V S     AS +  LM N+++LE   +DS++++LE+D
Sbjct: 92   CKDLI----SDTEVLSDRDVSVYVRSVQSCSASHFHTLMANINLLENKVSDSELLKLEKD 147

Query: 1431 ILEHLQRLGALRLFDXXXXXXXXXXXXXXXXXSAPTENVDEPRLNDSIENHLGKAVIXXX 1252
            IL  L RLGAL+LF                    P    ++ + N   +N L K ++   
Sbjct: 148  ILVQLGRLGALQLFHACLSRIIDMSDL-------PGLITEDGKANVRKDNELKKKLVFSK 200

Query: 1251 XXXXXXXXXXXXXXXXSDTL----QEDXXXXXXXXXXXXRNKKLK-------VARNEAEM 1105
                            +        E               KK K       +A+NEAEM
Sbjct: 201  RKEERKLRQERRLQASTSKRCACKSESSIESSIHHVVSTAAKKTKARGRRAIIAKNEAEM 260

Query: 1104 SSGVKMVAELEKLRMRLENDSGEMPSLSSWAEAAGVEKKELQRRLNYGWHCRDELLTSTR 925
            S G+K+VA+LEK+++ LE ++G+  SL+ WAEAAG+++K LQ  L++GW+CRDELL S R
Sbjct: 261  SRGIKVVAQLEKVKLTLEKETGKAVSLNCWAEAAGIDEKVLQHDLHFGWYCRDELLKSGR 320

Query: 924  SLVLFIARNYWGLGVAFEDLIQAGKVGVLQGAERFDQTRGYKFSTYVQYWVRKSMSTLVA 745
            SLVL+++R Y GLGVA EDL+QAG +G+LQGAERFD TRGY+FSTYVQYW+RK+MS LV+
Sbjct: 321  SLVLYLSRYYRGLGVAHEDLMQAGNIGILQGAERFDHTRGYQFSTYVQYWIRKAMSQLVS 380

Query: 744  RHSRGIRIPSTLSKAVNQVHKARKALRRSNGTYPDDCEIAKFTGLSVAKIISASKCLRVV 565
            RH RGI++P+TLS  +N+V KARK L+RS G +PDD E++K TGLS+ KI SA  CLR+V
Sbjct: 381  RHGRGIKVPTTLSTTINRVQKARKILKRSQGKHPDDVEVSKSTGLSLDKIKSADNCLRIV 440

Query: 564  GSIDQKIGDF-NTKYMEIIPDTSTATPEEAVFRQHMIKDVYTLLDGLDSREREVIILRFG 388
            GS+DQK+G F N KY+E  PDT+   PE+ V +QHM  DV+ LL  LD +ER V+I R+G
Sbjct: 441  GSLDQKVGHFINMKYLECTPDTALEMPEKTVMKQHMRNDVHKLLQELDPKERRVLIHRYG 500

Query: 387  LGNCQCKSLEEIGKRFSVSKEWIRRIERTALTKMRNEESLKILNHY 250
            L    C SL E+GK F VSKEWIR++E+ ALTK+R E++   L HY
Sbjct: 501  LEG-HCMSLHEVGKVFDVSKEWIRKMEKRALTKLRTEQNQTNLKHY 545


>ref|XP_004498453.1| PREDICTED: RNA polymerase sigma factor sigC-like [Cicer arietinum]
          Length = 545

 Score =  402 bits (1032), Expect = e-109
 Identities = 229/525 (43%), Positives = 324/525 (61%), Gaps = 13/525 (2%)
 Frame = -3

Query: 1785 GRDSSYILARVSAASVLFSEAET-QNDTSRT-QVSSSSHQLFEKYFLETRELKVAVGKGS 1612
            GR+  +   R+S  S ++ E ET Q D  +T   SSS+ ++ E   L+    KV  GK S
Sbjct: 34   GREVFFNPTRLSLLSTVYEEGETLQKDFGKTFAFSSSALEVPEMDLLQGEVTKVNKGKRS 93

Query: 1611 ADGLYRLLGNDTQSSNDKEKSASVISSLGMQASQYRLLMKNLDMLEYMFTDSDVVRLERD 1432
               ++ ++ N               + L      + LLM+NL +LE  F DS+ +RLE+D
Sbjct: 94   LSSVHEIIDN---------------TQLPFGEPHFGLLMENLGILEETFADSEAMRLEKD 138

Query: 1431 ILEHLQRLGALRLFDXXXXXXXXXXXXXXXXXSAPTENVDEPRLNDSIENHLGKAVIXXX 1252
            I+  L++LGAL LF+                     E+V E + N  ++N+ GK V+   
Sbjct: 139  IVLKLEKLGALELFNVCLTRSFGTSTESNCTDVV-LEHVKEKKRNFKVDNYTGKVVVQSK 197

Query: 1251 XXXXXXXXXXXXXXXXS--------DTLQEDXXXXXXXXXXXXRN---KKLKVARNEAEM 1105
                            +        D  QE              N   ++  +A+ E EM
Sbjct: 198  RKENRTRRKQASVAITTSFQSLPLEDNNQEGPLRLPASLVKRVSNTNNRRAVIAQREVEM 257

Query: 1104 SSGVKMVAELEKLRMRLENDSGEMPSLSSWAEAAGVEKKELQRRLNYGWHCRDELLTSTR 925
            S GVK++AELEK++  +E D+ +  SLSSWAEA+GV++  LQR+L +G++CRDEL+ STR
Sbjct: 258  SKGVKVLAELEKMKTAIEEDTKQAVSLSSWAEASGVDENVLQRQLYHGYYCRDELIRSTR 317

Query: 924  SLVLFIARNYWGLGVAFEDLIQAGKVGVLQGAERFDQTRGYKFSTYVQYWVRKSMSTLVA 745
            SLVL+ AR Y G+G+A EDL+Q G +GVLQGAERFD TRGY+FSTYVQYW+RKSMS +VA
Sbjct: 318  SLVLYFARKYRGMGIALEDLLQVGYIGVLQGAERFDSTRGYRFSTYVQYWIRKSMSRMVA 377

Query: 744  RHSRGIRIPSTLSKAVNQVHKARKALRRSNGTYPDDCEIAKFTGLSVAKIISASKCLRVV 565
            R++RGI IP +++KA++Q+ KARK L+ ++  YPDD EIAK TGLS+ +I SAS C+R+V
Sbjct: 378  RYARGITIPWSMNKAISQIQKARKLLKSTSMKYPDDHEIAKMTGLSLDRIRSASHCMRIV 437

Query: 564  GSIDQKIGDFNTKYMEIIPDTSTATPEEAVFRQHMIKDVYTLLDGLDSREREVIILRFGL 385
             S++QK+GD   +YM  + D S  +PEE V +QH+ KD++ +L  LDSRER+++ILRFGL
Sbjct: 438  SSMNQKMGDRGIEYMGYMADMSIESPEETVMKQHIRKDIHDILQSLDSRERQILILRFGL 497

Query: 384  GNCQCKSLEEIGKRFSVSKEWIRRIERTALTKMRNEESLKILNHY 250
             + Q KSLE IGK + VSKEWIR+IE+ ALTK+RNE +   LN+Y
Sbjct: 498  NDHQPKSLEYIGKIYKVSKEWIRKIEKKALTKLRNEANTSKLNYY 542


>ref|XP_007012219.1| RNApolymerase sigma-subunit C, putative [Theobroma cacao]
            gi|508782582|gb|EOY29838.1| RNApolymerase sigma-subunit
            C, putative [Theobroma cacao]
          Length = 848

 Score =  398 bits (1023), Expect = e-108
 Identities = 194/299 (64%), Positives = 248/299 (82%), Gaps = 1/299 (0%)
 Frame = -3

Query: 1143 NKKLKVARNEAEMSSGVKMVAELEKLRMRLENDSGEMPSLSSWAEAAGVEKKELQRRLNY 964
            +++L++ARNEAEMS GVK+VA LE++R  LE ++G   SLS WAEAAGV +K LQ+ L +
Sbjct: 547  SRRLRIARNEAEMSKGVKVVANLERIRTTLEEETGRAASLSCWAEAAGVSEKVLQQHLRF 606

Query: 963  GWHCRDELLTSTRSLVLFIARNYWGLGVAFEDLIQAGKVGVLQGAERFDQTRGYKFSTYV 784
            GW+CRDELL STRSLVL+ ARNY GLG+A EDLIQAG +GVLQGAERFD TRGY+FSTYV
Sbjct: 607  GWYCRDELLRSTRSLVLYFARNYRGLGIAHEDLIQAGSLGVLQGAERFDHTRGYRFSTYV 666

Query: 783  QYWVRKSMSTLVARHSRGIRIPSTLSKAVNQVHKARKALRRSNGTYPDDCEIAKFTGLSV 604
            Q+W+RKS+S +VARH+RGI++P TLS+A+ Q+ KARKAL +S+G YPD+  IAKFTGLS+
Sbjct: 667  QFWIRKSVSRIVARHARGIQVPCTLSRAIVQIQKARKALSKSHGKYPDEDAIAKFTGLSL 726

Query: 603  AKIISASKCLRVVGSIDQKIGD-FNTKYMEIIPDTSTATPEEAVFRQHMIKDVYTLLDGL 427
            AKI SA+KC+RVVGSIDQKIGD  N KY+E IPD S  +PE+ V RQHM +D++ LL+GL
Sbjct: 727  AKIRSANKCMRVVGSIDQKIGDCMNAKYLEFIPDLSVRSPEKTVMRQHMKEDIHDLLNGL 786

Query: 426  DSREREVIILRFGLGNCQCKSLEEIGKRFSVSKEWIRRIERTALTKMRNEESLKILNHY 250
            D+RER+V++LR+GL     KSLEEIG+ F VSKEWIRRIE  A+ K+R++E+ + L+HY
Sbjct: 787  DARERQVMVLRYGLKGSPPKSLEEIGRLFHVSKEWIRRIEMKAMKKLRDKETCRNLSHY 845



 Score = 79.3 bits (194), Expect = 6e-12
 Identities = 50/109 (45%), Positives = 65/109 (59%), Gaps = 1/109 (0%)
 Frame = -3

Query: 1710 DTSRTQVSSSSHQLFEKYFLETRELKVAVGKGSADGLYRLLGND-TQSSNDKEKSASVIS 1534
            D  +   SS++ Q  EK  LE  E+KV +GKGS    + L   D T      +KS+S  S
Sbjct: 347  DPLKAYASSAAPQTLEKGCLEIEEMKVNIGKGSQAHSHSLTMIDKTHELIGGDKSSSRTS 406

Query: 1533 SLGMQASQYRLLMKNLDMLEYMFTDSDVVRLERDILEHLQRLGALRLFD 1387
                +AS Y LLM+NLD+LE  F DSDV+ LER+IL  L R GAL+LF+
Sbjct: 407  PQACKASHYSLLMENLDVLEETFADSDVLTLEREILLQLGRFGALKLFN 455


>ref|XP_003588449.1| RNA polymerase sigma-B factor [Medicago truncatula]
            gi|355477497|gb|AES58700.1| RNA polymerase sigma-B factor
            [Medicago truncatula]
          Length = 549

 Score =  397 bits (1020), Expect = e-108
 Identities = 230/526 (43%), Positives = 326/526 (61%), Gaps = 14/526 (2%)
 Frame = -3

Query: 1785 GRDSSYILARVSAASVLFSEAET-QNDTSRTQVSSSSHQLFEKYFLETREL-KVAVGKGS 1612
            GR++ +   R+S  S ++ E ET Q D  +T   SS+ +  EK  L+  EL KV  GK S
Sbjct: 42   GRETLFNPVRLSLLSTVYEEGETLQKDFRKTFAFSSALEAPEKDLLQGGELTKVNKGKRS 101

Query: 1611 ADGLYRLLGNDTQSSNDKEKSASVISSLGMQASQYRLLMKNLDMLEYMFTDSDVVRLERD 1432
               ++ ++ N               S L  + S + LLM+NL +LE  F DS+ +RLE++
Sbjct: 102  LSSVHEMIDN---------------SHLPFEESHFGLLMENLGVLEETFADSEALRLEKN 146

Query: 1431 ILEHLQRLGALRLFDXXXXXXXXXXXXXXXXXSAPTENVDEPRLNDSIENHLGKAVIXXX 1252
            I+  L++LGAL LF+                     E V+E + N  ++++ GK ++   
Sbjct: 147  IILQLEKLGALELFNVCLTTSFGTSCISNCTHKV-LEQVEENKRNHKVDDYTGKVIVHSS 205

Query: 1251 XXXXXXXXXXXXXXXXS-------DTLQEDXXXXXXXXXXXXR----NKKLKVARNEAEM 1105
                                    D  QED                 NK+  +A+ E EM
Sbjct: 206  KRKENRRRKRGSVSIAPSSRSLPLDDNQEDPLRSSPASFVKRASNTKNKRAVIAQREVEM 265

Query: 1104 SSGVKMVAELEKLRMRLENDSGEMPSLSSWAEAAGVEKKELQRRLNYGWHCRDELLTSTR 925
            S GVK++AELEK+R  +E D+ ++ SLSSWAE +GV++K LQ++L +G++CRDEL+ STR
Sbjct: 266  SKGVKVLAELEKIRTAIEEDTKQVVSLSSWAETSGVDEKVLQQQLYHGYYCRDELIRSTR 325

Query: 924  SLVLFIARNYWGLGVAFEDLIQAGKVGVLQGAERFDQTRGYKFSTYVQYWVRKSMSTLVA 745
            SLVL+ AR Y G+G+A EDL+Q G +GVLQGAERFD T+GY+FSTYVQYW+RKSMS +VA
Sbjct: 326  SLVLYFARKYRGMGIALEDLLQVGYIGVLQGAERFDSTKGYRFSTYVQYWIRKSMSRMVA 385

Query: 744  RHSRGIRIPSTLSKAVNQVHKARKALRRSNGTYPDDCEIAKFTGLSVAKIISASKCLRVV 565
            +++RGI +P +++KA++Q+ KARK L+ +   YP+D EIAK TGLS+ KI+SAS CLR V
Sbjct: 386  KYARGITVPWSMNKAISQIQKARKVLKNTTMKYPNDLEIAKMTGLSLDKIMSASHCLRTV 445

Query: 564  GSIDQKIGDFNTKYMEIIPDTSTATPEEAVFRQHMIKDVYTLLDGLDSREREVIILRFGL 385
             S+ + I     +YM  +PD S  +PEE V +QH+ KD++ +L  LDSRER++IILRFGL
Sbjct: 446  SSMYRGI-----EYMGHMPDLSIESPEETVMKQHIKKDIHDILQSLDSRERQIIILRFGL 500

Query: 384  G-NCQCKSLEEIGKRFSVSKEWIRRIERTALTKMRNEESLKILNHY 250
              + Q KSLE IGK F VSKEWIR+IE+ ALTK+RNE ++  LN+Y
Sbjct: 501  NDDHQPKSLEYIGKIFKVSKEWIRKIEKKALTKLRNETNISKLNYY 546


>ref|XP_003551127.1| PREDICTED: RNA polymerase sigma factor sigC isoform X1 [Glycine max]
          Length = 551

 Score =  392 bits (1006), Expect = e-106
 Identities = 229/519 (44%), Positives = 323/519 (62%), Gaps = 6/519 (1%)
 Frame = -3

Query: 1782 RDSSYILARVSAASVLFSEAET-QNDTSRT-QVSSSSHQLFEKYFLETRELKVAVGKGSA 1609
            R++ +   R+S  S  + E E  Q D  R    SSS+ +  E   L   E +V  GK S 
Sbjct: 40   RETCFNFTRLSFPSTFYEEGEALQKDFGRVFAFSSSALETLENDSLGREETQVNKGKRSL 99

Query: 1608 DGLYRLLGNDTQSSNDKEKSASVISSLGMQASQYRLLMKNLDMLEYMFTDSDVVRLERDI 1429
              +++++ N      +    +    S   +A  +RLLM+NL +LE  F DS+ +RLE+ I
Sbjct: 100  SSVHKMIDNTQMPFGEVSTVSKKFESF--RAQHFRLLMENLCVLEETFVDSEALRLEKAI 157

Query: 1428 LEHLQRLGALRLFDXXXXXXXXXXXXXXXXXSAPTENVDEPRLNDSIENHLGKAVIXXXX 1249
            +  L +LGAL LF+                     + VD+ + +  +     K       
Sbjct: 158  ILQLGKLGALELFNVCLSRSLGTSLVSNY-----ADKVDDYK-DKVVVQSSKKKENKTRR 211

Query: 1248 XXXXXXXXXXXXXXXSDTLQEDXXXXXXXXXXXXRNKKLK---VARNEAEMSSGVKMVAE 1078
                               QED             N K K   VA+ EAEMS GVK++AE
Sbjct: 212  KREFVSTAVSSQSLTLKANQEDLLGFSASLVKRAPNTKNKRILVAKREAEMSKGVKVLAE 271

Query: 1077 LEKLRMRLENDSGEMPSLSSWAEAAGVEKKELQRRLNYGWHCRDELLTSTRSLVLFIARN 898
            LEK+R  +E D+  + SLS+WAEA+GV++K LQ+ L+ G++C+DEL+ STRSLVL++AR 
Sbjct: 272  LEKIRTAIEEDTKRVASLSTWAEASGVDEKVLQKLLHRGYYCQDELIRSTRSLVLYLARK 331

Query: 897  YWGLGVAFEDLIQAGKVGVLQGAERFDQTRGYKFSTYVQYWVRKSMSTLVARHSRGIRIP 718
            Y G+G+A +DL+QAG VGVLQGAERFD TRGYKFSTYVQYW+RKS+  +VAR++RGI IP
Sbjct: 332  YRGMGIALDDLLQAGYVGVLQGAERFDSTRGYKFSTYVQYWIRKSILRVVARYARGIVIP 391

Query: 717  STLSKAVNQVHKARKALRRSNGTYPDDCEIAKFTGLSVAKIISASKCLRVVGSIDQKIGD 538
             +L++A+NQ+ KARKA++ ++   PDD EIAK TGLS+ KI SAS CLR+V SIDQK+GD
Sbjct: 392  WSLNRAINQIQKARKAMKSTHKKCPDDYEIAKMTGLSLDKIKSASNCLRIVASIDQKVGD 451

Query: 537  F-NTKYMEIIPDTSTATPEEAVFRQHMIKDVYTLLDGLDSREREVIILRFGLGNCQCKSL 361
            +   +YME++PD +  +PE+AV +QHM KDV+ LL GL+ RER+++ LRFGL + Q +SL
Sbjct: 452  YLGVEYMELLPDATIESPEDAVMKQHMRKDVHDLLKGLNLRERKILTLRFGLNDNQPRSL 511

Query: 360  EEIGKRFSVSKEWIRRIERTALTKMRNEESLKILNHYYM 244
            ++IG  F VSKE IR+IE+ ALTK++NE ++  L HYY+
Sbjct: 512  QDIGTLFKVSKERIRKIEKKALTKLKNEATISKL-HYYL 549


>gb|EPS65656.1| hypothetical protein M569_09119, partial [Genlisea aurea]
          Length = 463

 Score =  390 bits (1003), Expect = e-106
 Identities = 212/431 (49%), Positives = 283/431 (65%), Gaps = 9/431 (2%)
 Frame = -3

Query: 1536 SSLGMQASQYRLLMKNLDMLEYMFTDSDVVRLERDILEHLQRLGALRLFDXXXXXXXXXX 1357
            SS  ++ S++ LLMKNLD LE MF+DS  VRLE DILE LQRLGA+ LF+          
Sbjct: 33   SSNAVKTSRFVLLMKNLDTLENMFSDSYAVRLEDDILEQLQRLGAIHLFNSCLSTTLRSA 92

Query: 1356 XXXXXXXSAPTE---NVDEPRLNDSIENHLGKAVIXXXXXXXXXXXXXXXXXXXSDTLQE 1186
                    AP +    +D       +++   +                      S  +++
Sbjct: 93   ETFDSSSHAPADVLRKIDSANCKVIVQSGKKELRKLRRKRAVDFEAGNLSLQFTSRDVRK 152

Query: 1185 DXXXXXXXXXXXXRNKKLK---VARNEAEMSSGVKMVAELEKLRMRLENDSGEMPSLSSW 1015
            +               + K   + ++E++M++G K+V ELE++R ++E++SGE PS S W
Sbjct: 153  NFRTPKTDSARAVARSRYKKQRITQSESDMAAGFKLVTELERIRKKVEDESGETPSFSRW 212

Query: 1014 AEAAGVEKKELQRRLNYGWHCRDELLTSTRSLVLFIARNYWGLGVAFEDLIQAGKVGVLQ 835
            AEAA +E KEL+RRLNYGWHCRD+LL S+RSLV+FIARNYWGLG+AFEDLIQAG + VL+
Sbjct: 213  AEAARIESKELKRRLNYGWHCRDQLLKSSRSLVVFIARNYWGLGIAFEDLIQAGNMAVLR 272

Query: 834  GAERFDQTRGYKFSTYVQYWVRKSMSTLVARHSRGIRIPSTLSKAVNQVHKARKALRRSN 655
            GAERFDQ+RGYKFSTYVQYW+RKSMS LVA HSRGIRIP T++K +NQV  ARK L  + 
Sbjct: 273  GAERFDQSRGYKFSTYVQYWIRKSMSMLVANHSRGIRIPGTMNKVINQVQNARKQLCAAT 332

Query: 654  GTYPDDCEIAKFTGLSVAKIISASKCLRVVGSIDQKIGD-FNTKYMEIIPDTSTATPEEA 478
            G  P D E+AK TG+S+ +I SA +C RVVGS+D+++G+   T  ME+  D S  +PEEA
Sbjct: 333  GRTPSDLEVAKLTGISLERIRSAGRCPRVVGSVDRRVGNPPGTLLMEVTADESICSPEEA 392

Query: 477  VFRQHMIKDVYTLLDGLDSREREVIILRFGLG--NCQCKSLEEIGKRFSVSKEWIRRIER 304
              R+   +DV  ++ GL+ REREV++LRFGLG  + + KSL+EIGK   VSKEW+RRIE 
Sbjct: 393  AVREERARDVERMVRGLEWREREVLVLRFGLGRRDGEKKSLQEIGKILCVSKEWVRRIET 452

Query: 303  TALTKMRNEES 271
            TAL K+R  +S
Sbjct: 453  TALAKLRRTQS 463


>ref|XP_002877947.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
            gi|297323785|gb|EFH54206.1| predicted protein
            [Arabidopsis lyrata subsp. lyrata]
          Length = 568

 Score =  375 bits (962), Expect = e-101
 Identities = 182/302 (60%), Positives = 248/302 (82%), Gaps = 2/302 (0%)
 Frame = -3

Query: 1140 KKLKVARNEAEMSSGVKMVAELEKLRMRLENDSGEMPSLSSWAEAAGVEKKELQRRLNYG 961
            K+ ++++NEAEMS+GVK+VA++E++R +LE +SG++ SLS WAEAAG+ +K L R L+YG
Sbjct: 267  KRERISKNEAEMSTGVKIVADMERIRTQLEEESGKVASLSCWAEAAGMNEKLLMRNLHYG 326

Query: 960  WHCRDELLTSTRSLVLFIARNYWGLGVAFEDLIQAGKVGVLQGAERFDQTRGYKFSTYVQ 781
            W+CRDELL STRSLVLF+ARNY GLG+A EDLIQAG VGVLQGAERFD TRGYKFSTYVQ
Sbjct: 327  WYCRDELLKSTRSLVLFLARNYRGLGIAHEDLIQAGYVGVLQGAERFDHTRGYKFSTYVQ 386

Query: 780  YWVRKSMSTLVARHSRGIRIPSTLSKAVNQVHKARKALRRSNG-TYPDDCEIAKFTGLSV 604
            YW+RKSMS +V+RH+RG+ IPS++ + +NQ+ KARK L+ S+G  YP D +I+K T LSV
Sbjct: 387  YWIRKSMSMMVSRHARGVHIPSSIIRTINQIQKARKTLKTSHGIKYPADEDISKLTSLSV 446

Query: 603  AKIISASKCLRVVGSIDQKIGD-FNTKYMEIIPDTSTATPEEAVFRQHMIKDVYTLLDGL 427
             KI +A++CL+VVGSI++K+GD F+TK++E  PDT+  +PEEAV RQ   +D++ LL+GL
Sbjct: 447  KKIRAANQCLKVVGSIEKKVGDCFSTKFLEFTPDTTMESPEEAVMRQSARRDIHDLLEGL 506

Query: 426  DSREREVIILRFGLGNCQCKSLEEIGKRFSVSKEWIRRIERTALTKMRNEESLKILNHYY 247
            + RE++V++LR+GL N + KSLEEIGK   VSKEWIR+IER A+ K+R++ + + L +Y 
Sbjct: 507  EPREKQVMVLRYGLQNYRPKSLEEIGKLLRVSKEWIRKIERRAMAKLRDQPNAEDLRYYL 566

Query: 246  MQ 241
             Q
Sbjct: 567  NQ 568


>dbj|BAA22215.1| plastid RNA polymerase sigma-subunit [Arabidopsis thaliana]
          Length = 571

 Score =  371 bits (953), Expect = e-100
 Identities = 181/302 (59%), Positives = 245/302 (81%), Gaps = 2/302 (0%)
 Frame = -3

Query: 1140 KKLKVARNEAEMSSGVKMVAELEKLRMRLENDSGEMPSLSSWAEAAGVEKKELQRRLNYG 961
            K+ +++RNE EMS+GVK+VA++E++R +LE +SG++ SLS WA AAG+ +K L R L+YG
Sbjct: 270  KRERISRNETEMSTGVKIVADMERIRTQLEEESGKVASLSCWAAAAGMNEKLLMRNLHYG 329

Query: 960  WHCRDELLTSTRSLVLFIARNYWGLGVAFEDLIQAGKVGVLQGAERFDQTRGYKFSTYVQ 781
            W+CRDEL+ STRSLVLF+ARNY G+G+A EDLIQAG VGVLQGAERFD TRGYKFSTYVQ
Sbjct: 330  WYCRDELVKSTRSLVLFLARNYRGMGIAHEDLIQAGYVGVLQGAERFDHTRGYKFSTYVQ 389

Query: 780  YWVRKSMSTLVARHSRGIRIPSTLSKAVNQVHKARKALRRSNG-TYPDDCEIAKFTGLSV 604
            YW+RKSMST+V+RH+RG+ IPS++ + +N + KARK L+ S+G  Y  D EIAK TG SV
Sbjct: 390  YWIRKSMSTMVSRHARGVHIPSSIIRTINHIQKARKTLKTSHGIKYAADEEIAKLTGHSV 449

Query: 603  AKIISASKCLRVVGSIDQKIGD-FNTKYMEIIPDTSTATPEEAVFRQHMIKDVYTLLDGL 427
             KI +A++CL+VVGSID+K+GD F TK++E  PDT+  +PEEAV RQ   +D++ LL+GL
Sbjct: 450  KKIRAANQCLKVVGSIDKKVGDCFTTKFLEFTPDTTMESPEEAVMRQSARRDIHDLLEGL 509

Query: 426  DSREREVIILRFGLGNCQCKSLEEIGKRFSVSKEWIRRIERTALTKMRNEESLKILNHYY 247
            + RE++V++LR+GL + + KSLEEIGK F VSKEWIR+IER A+ K+R++ + + L +Y 
Sbjct: 510  EPREKQVMVLRYGLQDYRPKSLEEIGKLFKVSKEWIRKIERRAMAKLRDQPNAEDLRYYL 569

Query: 246  MQ 241
             Q
Sbjct: 570  NQ 571


>ref|XP_006290815.1| hypothetical protein CARUB_v10016920mg [Capsella rubella]
            gi|482559522|gb|EOA23713.1| hypothetical protein
            CARUB_v10016920mg [Capsella rubella]
          Length = 581

 Score =  371 bits (953), Expect = e-100
 Identities = 182/299 (60%), Positives = 244/299 (81%), Gaps = 2/299 (0%)
 Frame = -3

Query: 1140 KKLKVARNEAEMSSGVKMVAELEKLRMRLENDSGEMPSLSSWAEAAGVEKKELQRRLNYG 961
            K+ +++RNEAEMS+GVK+VA++E++R +LE +SG++ SLS WAEAAG+ +K L R L+YG
Sbjct: 280  KRERISRNEAEMSTGVKIVADMERIRTQLEEESGKVASLSCWAEAAGMNEKLLMRNLHYG 339

Query: 960  WHCRDELLTSTRSLVLFIARNYWGLGVAFEDLIQAGKVGVLQGAERFDQTRGYKFSTYVQ 781
            W+CRDELL STRSLVLF+ARNY GLG+A EDLIQAG VGVLQGAERFD  RGYKFSTYVQ
Sbjct: 340  WYCRDELLKSTRSLVLFLARNYRGLGIAHEDLIQAGFVGVLQGAERFDHARGYKFSTYVQ 399

Query: 780  YWVRKSMSTLVARHSRGIRIPSTLSKAVNQVHKARKALRRSNG-TYPDDCEIAKFTGLSV 604
            YW+RKSMS +V+RH+RG+ IPS++ + +NQ+ KARK L+ S+G  YP D EI+K T LSV
Sbjct: 400  YWIRKSMSMMVSRHARGVHIPSSIIRTINQIQKARKTLKTSHGIKYPADEEISKLTSLSV 459

Query: 603  AKIISASKCLRVVGSIDQKIGD-FNTKYMEIIPDTSTATPEEAVFRQHMIKDVYTLLDGL 427
             KI +A++CL+VVGSI+ K+GD F+TK++E  PDT   +PEEAV RQ   +D++ LL+GL
Sbjct: 460  KKIRAANQCLKVVGSIENKVGDCFSTKFLEFTPDTMMESPEEAVMRQSARRDLHDLLEGL 519

Query: 426  DSREREVIILRFGLGNCQCKSLEEIGKRFSVSKEWIRRIERTALTKMRNEESLKILNHY 250
            + RE++V++LR+GL + + KSLEEIGK   VSKEWIRRIER A+ K+R++ + + L +Y
Sbjct: 520  EPREKQVMVLRYGLQDYRPKSLEEIGKLLRVSKEWIRRIERRAMAKLRDQPNAEDLRYY 578