BLASTX nr result
ID: Mentha28_contig00037613
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Mentha28_contig00037613
(413 letters)
Database: ./nr
38,876,450 sequences; 13,856,398,315 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|EXC15864.1| DNA-directed RNA polymerases I, II, and III subun... 57 2e-06
gb|EYU34199.1| hypothetical protein MIMGU_mgv1a013932mg [Mimulus... 57 3e-06
ref|XP_006355533.1| PREDICTED: DNA-directed RNA polymerases II a... 57 3e-06
ref|XP_004239999.1| PREDICTED: DNA-directed RNA polymerases I, I... 57 3e-06
emb|CBI28035.3| unnamed protein product [Vitis vinifera] 56 5e-06
ref|XP_006381734.1| DNA-directed RNA polymerase family protein [... 56 5e-06
ref|XP_002284107.1| PREDICTED: DNA-directed RNA polymerases I, I... 56 5e-06
ref|XP_006406183.1| hypothetical protein EUTSA_v10021534mg [Eutr... 56 6e-06
ref|XP_006298572.1| hypothetical protein CARUB_v10014656mg [Caps... 56 6e-06
ref|NP_188871.1| DNA-directed RNA polymerase NRPB5 [Arabidopsis ... 56 6e-06
ref|XP_002885498.1| ATRPABC24.3 [Arabidopsis lyrata subsp. lyrat... 56 6e-06
>gb|EXC15864.1| DNA-directed RNA polymerases I, II, and III subunit RPABC1 [Morus
notabilis]
Length = 253
Score = 57.4 bits (137), Expect = 2e-06
Identities = 26/27 (96%), Positives = 27/27 (100%)
Frame = +1
Query: 1 VVQQNLTPFARTCVSEISTKFHLEVFQ 81
VVQQNLTPFARTC+SEISTKFHLEVFQ
Sbjct: 101 VVQQNLTPFARTCISEISTKFHLEVFQ 127
>gb|EYU34199.1| hypothetical protein MIMGU_mgv1a013932mg [Mimulus guttatus]
Length = 206
Score = 57.0 bits (136), Expect = 3e-06
Identities = 25/27 (92%), Positives = 27/27 (100%)
Frame = +1
Query: 1 VVQQNLTPFARTCVSEISTKFHLEVFQ 81
+VQQNLTPFARTC+SEISTKFHLEVFQ
Sbjct: 101 IVQQNLTPFARTCISEISTKFHLEVFQ 127
>ref|XP_006355533.1| PREDICTED: DNA-directed RNA polymerases II and IV subunit 5A-like
[Solanum tuberosum]
Length = 206
Score = 57.0 bits (136), Expect = 3e-06
Identities = 25/27 (92%), Positives = 27/27 (100%)
Frame = +1
Query: 1 VVQQNLTPFARTCVSEISTKFHLEVFQ 81
+VQQNLTPFARTC+SEISTKFHLEVFQ
Sbjct: 101 IVQQNLTPFARTCISEISTKFHLEVFQ 127
>ref|XP_004239999.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC1-like isoform 1 [Solanum lycopersicum]
gi|460388693|ref|XP_004240000.1| PREDICTED: DNA-directed
RNA polymerases I, II, and III subunit RPABC1-like
isoform 2 [Solanum lycopersicum]
Length = 206
Score = 57.0 bits (136), Expect = 3e-06
Identities = 25/27 (92%), Positives = 27/27 (100%)
Frame = +1
Query: 1 VVQQNLTPFARTCVSEISTKFHLEVFQ 81
+VQQNLTPFARTC+SEISTKFHLEVFQ
Sbjct: 101 IVQQNLTPFARTCISEISTKFHLEVFQ 127
>emb|CBI28035.3| unnamed protein product [Vitis vinifera]
Length = 186
Score = 56.2 bits (134), Expect = 5e-06
Identities = 25/27 (92%), Positives = 27/27 (100%)
Frame = +1
Query: 1 VVQQNLTPFARTCVSEISTKFHLEVFQ 81
VVQQNLTPFARTC++EISTKFHLEVFQ
Sbjct: 81 VVQQNLTPFARTCINEISTKFHLEVFQ 107
>ref|XP_006381734.1| DNA-directed RNA polymerase family protein [Populus trichocarpa]
gi|550336487|gb|ERP59531.1| DNA-directed RNA polymerase
family protein [Populus trichocarpa]
Length = 206
Score = 56.2 bits (134), Expect = 5e-06
Identities = 25/27 (92%), Positives = 27/27 (100%)
Frame = +1
Query: 1 VVQQNLTPFARTCVSEISTKFHLEVFQ 81
VVQQNLTPFARTC++EISTKFHLEVFQ
Sbjct: 101 VVQQNLTPFARTCINEISTKFHLEVFQ 127
>ref|XP_002284107.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC1 isoform 1 [Vitis vinifera]
gi|225445172|ref|XP_002284110.1| PREDICTED: DNA-directed
RNA polymerases I, II, and III subunit RPABC1 isoform 2
[Vitis vinifera]
Length = 206
Score = 56.2 bits (134), Expect = 5e-06
Identities = 25/27 (92%), Positives = 27/27 (100%)
Frame = +1
Query: 1 VVQQNLTPFARTCVSEISTKFHLEVFQ 81
VVQQNLTPFARTC++EISTKFHLEVFQ
Sbjct: 101 VVQQNLTPFARTCINEISTKFHLEVFQ 127
>ref|XP_006406183.1| hypothetical protein EUTSA_v10021534mg [Eutrema salsugineum]
gi|557107329|gb|ESQ47636.1| hypothetical protein
EUTSA_v10021534mg [Eutrema salsugineum]
Length = 206
Score = 55.8 bits (133), Expect = 6e-06
Identities = 25/27 (92%), Positives = 27/27 (100%)
Frame = +1
Query: 1 VVQQNLTPFARTCVSEISTKFHLEVFQ 81
VVQQNLTPFARTC+SEIS+KFHLEVFQ
Sbjct: 101 VVQQNLTPFARTCISEISSKFHLEVFQ 127
>ref|XP_006298572.1| hypothetical protein CARUB_v10014656mg [Capsella rubella]
gi|482567281|gb|EOA31470.1| hypothetical protein
CARUB_v10014656mg [Capsella rubella]
Length = 205
Score = 55.8 bits (133), Expect = 6e-06
Identities = 25/27 (92%), Positives = 27/27 (100%)
Frame = +1
Query: 1 VVQQNLTPFARTCVSEISTKFHLEVFQ 81
VVQQNLTPFARTC+SEIS+KFHLEVFQ
Sbjct: 100 VVQQNLTPFARTCISEISSKFHLEVFQ 126
>ref|NP_188871.1| DNA-directed RNA polymerase NRPB5 [Arabidopsis thaliana]
gi|75275037|sp|O81098.1|RPB5A_ARATH RecName:
Full=DNA-directed RNA polymerases II and IV subunit 5A;
Short=RPB5a; AltName: Full=DNA-directed RNA polymerase
II subunit E; AltName: Full=RNA polymerase I, II and III
24.3 kDa subunit; Short=AtRPB24.3
gi|13899113|gb|AAK48978.1|AF370551_1 RNA polymerase I,
II and III 24.3 kDa subunit [Arabidopsis thaliana]
gi|15724322|gb|AAL06554.1|AF412101_1 AT3g22320/MCB17_5
[Arabidopsis thaliana] gi|3372233|gb|AAC28253.1| RNA
polymerase I, II and III 24.3 kDa subunit [Arabidopsis
thaliana] gi|9293866|dbj|BAB01769.1| RNA polymerase I,
II and III 24.3 kDa subunit [Arabidopsis thaliana]
gi|21554280|gb|AAM63355.1| RNA polymerase I, II and III
24.3 kDa subunit [Arabidopsis thaliana]
gi|25083949|gb|AAN72141.1| RNA polymerase I, II and III
24.3 kDa subunit [Arabidopsis thaliana]
gi|332643100|gb|AEE76621.1| DNA-directed RNA polymerase
NRPB5 [Arabidopsis thaliana]
Length = 205
Score = 55.8 bits (133), Expect = 6e-06
Identities = 25/27 (92%), Positives = 27/27 (100%)
Frame = +1
Query: 1 VVQQNLTPFARTCVSEISTKFHLEVFQ 81
VVQQNLTPFARTC+SEIS+KFHLEVFQ
Sbjct: 100 VVQQNLTPFARTCISEISSKFHLEVFQ 126
>ref|XP_002885498.1| ATRPABC24.3 [Arabidopsis lyrata subsp. lyrata]
gi|297331338|gb|EFH61757.1| ATRPABC24.3 [Arabidopsis
lyrata subsp. lyrata]
Length = 205
Score = 55.8 bits (133), Expect = 6e-06
Identities = 25/27 (92%), Positives = 27/27 (100%)
Frame = +1
Query: 1 VVQQNLTPFARTCVSEISTKFHLEVFQ 81
VVQQNLTPFARTC+SEIS+KFHLEVFQ
Sbjct: 100 VVQQNLTPFARTCISEISSKFHLEVFQ 126