BLASTX nr result
ID: Mentha28_contig00034839
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Mentha28_contig00034839
(989 letters)
Database: ./nr
38,876,450 sequences; 13,856,398,315 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAN71469.1| hypothetical protein VITISV_038993 [Vitis vinifera] 80 2e-12
emb|CAN64561.1| hypothetical protein VITISV_038232 [Vitis vinifera] 76 2e-11
gb|AFP55537.1| retrotransposon polyprotein [Rosa rugosa] 68 5e-10
gb|AAT93988.1| putative polyprotein [Oryza sativa Japonica Group] 56 6e-10
ref|NP_001174286.1| Os05g0235100 [Oryza sativa Japonica Group] g... 56 6e-10
ref|YP_514636.1| hypothetical protein OrsaiPp07 [Oryza sativa In... 55 6e-10
ref|YP_002000554.1| orf490 [Oryza sativa Japonica Group] gi|2349... 55 6e-10
emb|CAN68364.1| hypothetical protein VITISV_021899 [Vitis vinifera] 58 8e-10
ref|XP_002489193.1| hypothetical protein SORBIDRAFT_0013s009070 ... 55 2e-09
gb|AAL66754.1|AF464738_5 putative copia-like retrotransposon Hop... 59 8e-09
gb|AAM74347.1|AC115686_14 Putative retroelement [Oryza sativa Ja... 54 8e-09
gb|AAN34944.1| Putative retroelement [Oryza sativa Japonica Group] 54 8e-09
gb|ABB47203.2| retrotransposon protein, putative, unclassified [... 54 8e-09
emb|CCH50966.1| T4.5 [Malus x robusta] 58 1e-08
gb|ACY72569.1| unknown [Oryza sativa Japonica Group] 62 1e-08
emb|CAN67588.1| hypothetical protein VITISV_036280 [Vitis vinifera] 51 2e-08
emb|CAN68489.1| hypothetical protein VITISV_037543 [Vitis vinifera] 55 2e-08
pir||T02087 gag/pol polyprotein - maize retrotransposon Hopscotc... 53 2e-08
emb|CAN67403.1| hypothetical protein VITISV_025614 [Vitis vinifera] 55 2e-08
emb|CAH66488.1| OSIGBa0076I14.9 [Oryza sativa Indica Group] 51 3e-08
>emb|CAN71469.1| hypothetical protein VITISV_038993 [Vitis vinifera]
Length = 428
Score = 79.7 bits (195), Expect = 2e-12
Identities = 41/56 (73%), Positives = 43/56 (76%), Gaps = 3/56 (5%)
Frame = +1
Query: 88 AYDGAPLSDATEYRSIVGALP---LTRLDICYAINQVCQFMHALTTLHLQAVASYG 246
AYDGAPLSDATEYRSIVGAL LTR DICYA+NQVCQFMHAL + AV G
Sbjct: 166 AYDGAPLSDATEYRSIVGALQYLTLTRPDICYAVNQVCQFMHALKCSSISAVVKIG 221
>emb|CAN64561.1| hypothetical protein VITISV_038232 [Vitis vinifera]
Length = 140
Score = 75.9 bits (185), Expect = 2e-11
Identities = 38/44 (86%), Positives = 39/44 (88%), Gaps = 3/44 (6%)
Frame = +1
Query: 88 AYDGAPLSDATEYRSIVGALP---LTRLDICYAINQVCQFMHAL 210
AYDGAPLSDATEYRSIVGAL LTR DICYA+NQVCQFMHAL
Sbjct: 93 AYDGAPLSDATEYRSIVGALQYLTLTRPDICYAVNQVCQFMHAL 136
>gb|AFP55537.1| retrotransposon polyprotein [Rosa rugosa]
Length = 1384
Score = 67.8 bits (164), Expect(2) = 5e-10
Identities = 34/51 (66%), Positives = 38/51 (74%), Gaps = 3/51 (5%)
Frame = +1
Query: 91 YDGAPLSDATEYRSIVGALP---LTRLDICYAINQVCQFMHALTTLHLQAV 234
YDG L D +EYRSIVGAL LTR DICYA+NQVCQFMH+ T +H AV
Sbjct: 1151 YDGVKLEDPSEYRSIVGALQYLTLTRPDICYAVNQVCQFMHSPTNVHWVAV 1201
Score = 23.9 bits (50), Expect(2) = 5e-10
Identities = 15/36 (41%), Positives = 17/36 (47%)
Frame = +3
Query: 237 ILRYLKXXXXXXXXXXXXXXXXFFAFSDADWAGCPD 344
ILRYLK A+SDAD+AG PD
Sbjct: 1204 ILRYLKYTLNHGLVYQPGSHK-LVAYSDADYAGDPD 1238
>gb|AAT93988.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1480
Score = 55.8 bits (133), Expect(2) = 6e-10
Identities = 29/52 (55%), Positives = 35/52 (67%), Gaps = 3/52 (5%)
Frame = +1
Query: 88 AYDGAPLSDATEYRSIVGA---LPLTRLDICYAINQVCQFMHALTTLHLQAV 234
A DGAP+SD TEYRS+VGA L LTR ++ YA+ QVC FMH HL +
Sbjct: 1242 ATDGAPVSDPTEYRSLVGALQYLTLTRPELAYAVQQVCLFMHDPREPHLALI 1293
Score = 35.4 bits (80), Expect(2) = 6e-10
Identities = 16/37 (43%), Positives = 19/37 (51%)
Frame = +3
Query: 237 ILRYLKXXXXXXXXXXXXXXXXFFAFSDADWAGCPDT 347
ILRY+K A+SDADWAGCPD+
Sbjct: 1296 ILRYIKGTLHIGLHLGTTPVDSLTAYSDADWAGCPDS 1332
>ref|NP_001174286.1| Os05g0235100 [Oryza sativa Japonica Group]
gi|255676152|dbj|BAH93014.1| Os05g0235100, partial
[Oryza sativa Japonica Group]
Length = 841
Score = 55.8 bits (133), Expect(2) = 6e-10
Identities = 29/52 (55%), Positives = 35/52 (67%), Gaps = 3/52 (5%)
Frame = +1
Query: 88 AYDGAPLSDATEYRSIVGA---LPLTRLDICYAINQVCQFMHALTTLHLQAV 234
A DGAP+SD TEYRS+VGA L LTR ++ YA+ QVC FMH HL +
Sbjct: 603 ATDGAPVSDPTEYRSLVGALQYLTLTRPELAYAVQQVCLFMHDPREPHLALI 654
Score = 35.4 bits (80), Expect(2) = 6e-10
Identities = 16/37 (43%), Positives = 19/37 (51%)
Frame = +3
Query: 237 ILRYLKXXXXXXXXXXXXXXXXFFAFSDADWAGCPDT 347
ILRY+K A+SDADWAGCPD+
Sbjct: 657 ILRYIKGTLHIGLHLGTTPVDSLTAYSDADWAGCPDS 693
>ref|YP_514636.1| hypothetical protein OrsaiPp07 [Oryza sativa Indica Group]
gi|289065044|ref|YP_003433855.1| hypothetical protein
OrrupM_p18 [Oryza rufipogon] gi|74100111|gb|AAZ99275.1|
hypothetical protein (mitochondrion) [Oryza sativa
Indica Group] gi|74100166|gb|AAZ99329.1| hypothetical
protein (mitochondrion) [Oryza sativa Japonica Group]
gi|74100220|gb|AAZ99382.1| hypothetical protein
(mitochondrion) [Oryza sativa Japonica Group]
gi|285026126|dbj|BAI67959.1| hypothetical protein [Oryza
rufipogon] gi|285026155|dbj|BAI67987.1| hypothetical
protein [Oryza sativa Indica Group]
gi|353685219|gb|AER12982.1| hypothetical protein
(mitochondrion) [Oryza sativa Indica Group]
gi|353685288|gb|AER13050.1| hypothetical protein
(mitochondrion) [Oryza sativa Indica Group]
gi|374277649|gb|AEZ03755.1| hypothetical protein
(mitochondrion) [Oryza sativa Indica Group]
gi|374277659|gb|AEZ03764.1| hypothetical protein
(mitochondrion) [Oryza sativa Indica Group]
gi|528540457|dbj|BAN67511.1| hypothetical protein
(mitochondrion) [Oryza rufipogon]
gi|528540460|dbj|BAN67513.1| hypothetical protein
(mitochondrion) [Oryza rufipogon]
Length = 490
Score = 54.7 bits (130), Expect(2) = 6e-10
Identities = 30/54 (55%), Positives = 38/54 (70%), Gaps = 5/54 (9%)
Frame = +1
Query: 88 AYDGAPLS--DATEYRSIVGALP---LTRLDICYAINQVCQFMHALTTLHLQAV 234
A +G PL D+T YRSIVGAL LTR DI + +N+VCQ++HA T+LH AV
Sbjct: 261 AKEGEPLGAEDSTRYRSIVGALQYLTLTRPDIAFPVNKVCQYLHAPTSLHWTAV 314
Score = 36.6 bits (83), Expect(2) = 6e-10
Identities = 18/36 (50%), Positives = 18/36 (50%)
Frame = +3
Query: 237 ILRYLKXXXXXXXXXXXXXXXXFFAFSDADWAGCPD 344
ILRYLK AFSDADWAGCPD
Sbjct: 317 ILRYLKGSLGLGLRICKSDSTLVSAFSDADWAGCPD 352
>ref|YP_002000554.1| orf490 [Oryza sativa Japonica Group] gi|23495377|dbj|BAC19858.1|
orf490 [Oryza sativa Japonica Group]
Length = 490
Score = 54.7 bits (130), Expect(2) = 6e-10
Identities = 30/54 (55%), Positives = 38/54 (70%), Gaps = 5/54 (9%)
Frame = +1
Query: 88 AYDGAPLS--DATEYRSIVGALP---LTRLDICYAINQVCQFMHALTTLHLQAV 234
A +G PL D+T YRSIVGAL LTR DI + +N+VCQ++HA T+LH AV
Sbjct: 261 AKEGEPLGAEDSTRYRSIVGALQYLTLTRPDIAFPVNKVCQYLHAPTSLHWTAV 314
Score = 36.6 bits (83), Expect(2) = 6e-10
Identities = 18/36 (50%), Positives = 18/36 (50%)
Frame = +3
Query: 237 ILRYLKXXXXXXXXXXXXXXXXFFAFSDADWAGCPD 344
ILRYLK AFSDADWAGCPD
Sbjct: 317 ILRYLKGSLGLGLRICKSDSTLVSAFSDADWAGCPD 352
>emb|CAN68364.1| hypothetical protein VITISV_021899 [Vitis vinifera]
Length = 431
Score = 58.2 bits (139), Expect(2) = 8e-10
Identities = 29/50 (58%), Positives = 35/50 (70%), Gaps = 3/50 (6%)
Frame = +1
Query: 94 DGAPLSDATEYRSIVGALP---LTRLDICYAINQVCQFMHALTTLHLQAV 234
DG L D T YRS+VGAL +TR DI Y +N++CQFMHA T+ HLQ V
Sbjct: 92 DGTRLEDPTLYRSLVGALQYCTITRPDIAYTVNKLCQFMHAPTSTHLQVV 141
Score = 32.7 bits (73), Expect(2) = 8e-10
Identities = 14/36 (38%), Positives = 17/36 (47%)
Frame = +3
Query: 237 ILRYLKXXXXXXXXXXXXXXXXFFAFSDADWAGCPD 344
+LRYLK A++DADWA CPD
Sbjct: 144 VLRYLKGSLFYGLSFQPSSSLDLIAYTDADWASCPD 179
>ref|XP_002489193.1| hypothetical protein SORBIDRAFT_0013s009070 [Sorghum bicolor]
gi|241947143|gb|EES20288.1| hypothetical protein
SORBIDRAFT_0013s009070 [Sorghum bicolor]
Length = 1219
Score = 55.1 bits (131), Expect(2) = 2e-09
Identities = 28/49 (57%), Positives = 34/49 (69%), Gaps = 3/49 (6%)
Frame = +1
Query: 88 AYDGAPLSDATEYRSIVGA---LPLTRLDICYAINQVCQFMHALTTLHL 225
A DGAP++DAT+YRS+ GA L LTR D+ YA+ QVC FMH HL
Sbjct: 542 ATDGAPVADATQYRSLAGALQYLTLTRPDLAYAVQQVCLFMHDPREPHL 590
Score = 34.7 bits (78), Expect(2) = 2e-09
Identities = 15/37 (40%), Positives = 19/37 (51%)
Frame = +3
Query: 237 ILRYLKXXXXXXXXXXXXXXXXFFAFSDADWAGCPDT 347
+LRY+K A+SDADWAGCPD+
Sbjct: 596 VLRYVKGTLSTGLHIGVGGLDTLTAYSDADWAGCPDS 632
>gb|AAL66754.1|AF464738_5 putative copia-like retrotransposon Hopscotch polyprotein [Zea mays]
Length = 1313
Score = 58.9 bits (141), Expect(2) = 8e-09
Identities = 31/53 (58%), Positives = 40/53 (75%), Gaps = 5/53 (9%)
Frame = +1
Query: 91 YDGAPLS--DATEYRSIVGALP---LTRLDICYAINQVCQFMHALTTLHLQAV 234
++G+PL D T+YRSIVGAL LTR DI +++N+VCQF+HA TTLH AV
Sbjct: 1082 HEGSPLGEKDITQYRSIVGALQYLTLTRPDIAFSVNKVCQFLHAPTTLHWAAV 1134
Score = 28.5 bits (62), Expect(2) = 8e-09
Identities = 15/36 (41%), Positives = 16/36 (44%)
Frame = +3
Query: 237 ILRYLKXXXXXXXXXXXXXXXXFFAFSDADWAGCPD 344
ILRY+K AFSDADWAG D
Sbjct: 1137 ILRYIKQCTNLGLHIHRSDSTLVSAFSDADWAGSVD 1172
>gb|AAM74347.1|AC115686_14 Putative retroelement [Oryza sativa Japonica Group]
Length = 1250
Score = 53.5 bits (127), Expect(2) = 8e-09
Identities = 30/52 (57%), Positives = 33/52 (63%), Gaps = 3/52 (5%)
Frame = +1
Query: 88 AYDGAPLSDATEYRSIVGALP---LTRLDICYAINQVCQFMHALTTLHLQAV 234
A DGAP+SD EYRS+ GAL LTR +I YAI QVC FMH HL V
Sbjct: 1112 ATDGAPVSDPMEYRSLAGALQYLTLTRPEIAYAIQQVCLFMHDPREPHLALV 1163
Score = 33.9 bits (76), Expect(2) = 8e-09
Identities = 15/37 (40%), Positives = 18/37 (48%)
Frame = +3
Query: 237 ILRYLKXXXXXXXXXXXXXXXXFFAFSDADWAGCPDT 347
ILRY+K A+SDADW GCPD+
Sbjct: 1166 ILRYIKGTLHICLHIGTAPVDSLTAYSDADWVGCPDS 1202
>gb|AAN34944.1| Putative retroelement [Oryza sativa Japonica Group]
Length = 1146
Score = 53.5 bits (127), Expect(2) = 8e-09
Identities = 30/52 (57%), Positives = 33/52 (63%), Gaps = 3/52 (5%)
Frame = +1
Query: 88 AYDGAPLSDATEYRSIVGALP---LTRLDICYAINQVCQFMHALTTLHLQAV 234
A DGAP+SD EYRS+ GAL LTR +I YAI QVC FMH HL V
Sbjct: 1008 ATDGAPVSDPMEYRSLAGALQYLTLTRPEIAYAIQQVCLFMHDPREPHLALV 1059
Score = 33.9 bits (76), Expect(2) = 8e-09
Identities = 15/37 (40%), Positives = 18/37 (48%)
Frame = +3
Query: 237 ILRYLKXXXXXXXXXXXXXXXXFFAFSDADWAGCPDT 347
ILRY+K A+SDADW GCPD+
Sbjct: 1062 ILRYIKGTLHICLHIGTAPVDSLTAYSDADWVGCPDS 1098
>gb|ABB47203.2| retrotransposon protein, putative, unclassified [Oryza sativa
Japonica Group]
Length = 1050
Score = 53.5 bits (127), Expect(2) = 8e-09
Identities = 30/52 (57%), Positives = 33/52 (63%), Gaps = 3/52 (5%)
Frame = +1
Query: 88 AYDGAPLSDATEYRSIVGALP---LTRLDICYAINQVCQFMHALTTLHLQAV 234
A DGAP+SD EYRS+ GAL LTR +I YAI QVC FMH HL V
Sbjct: 912 ATDGAPVSDPMEYRSLAGALQYLTLTRPEIAYAIQQVCLFMHDPREPHLALV 963
Score = 33.9 bits (76), Expect(2) = 8e-09
Identities = 15/37 (40%), Positives = 18/37 (48%)
Frame = +3
Query: 237 ILRYLKXXXXXXXXXXXXXXXXFFAFSDADWAGCPDT 347
ILRY+K A+SDADW GCPD+
Sbjct: 966 ILRYIKGTLHICLHIGTAPVDSLTAYSDADWVGCPDS 1002
>emb|CCH50966.1| T4.5 [Malus x robusta]
Length = 1670
Score = 58.2 bits (139), Expect(2) = 1e-08
Identities = 29/51 (56%), Positives = 36/51 (70%), Gaps = 3/51 (5%)
Frame = +1
Query: 91 YDGAPLSDATEYRSIVGALPL---TRLDICYAINQVCQFMHALTTLHLQAV 234
+ G LSD T YRS VGAL TR D+ +A+NQVCQ+MH+ T+HLQAV
Sbjct: 1423 HSGTLLSDPTSYRSTVGALQYLTWTRPDLAFAVNQVCQYMHSPQTIHLQAV 1473
Score = 28.5 bits (62), Expect(2) = 1e-08
Identities = 10/11 (90%), Positives = 11/11 (100%)
Frame = +3
Query: 309 AFSDADWAGCP 341
A+SDADWAGCP
Sbjct: 1499 AWSDADWAGCP 1509
>gb|ACY72569.1| unknown [Oryza sativa Japonica Group]
Length = 1436
Score = 61.6 bits (148), Expect(2) = 1e-08
Identities = 33/53 (62%), Positives = 41/53 (77%), Gaps = 5/53 (9%)
Frame = +1
Query: 91 YDGAPL--SDATEYRSIVGALP---LTRLDICYAINQVCQFMHALTTLHLQAV 234
Y+G+PL +DAT+YRSIVGAL LTR DI Y++N+VCQF+HA TT H AV
Sbjct: 1205 YEGSPLGPNDATQYRSIVGALQYLTLTRPDIAYSVNKVCQFLHAPTTDHWTAV 1257
Score = 25.0 bits (53), Expect(2) = 1e-08
Identities = 13/36 (36%), Positives = 14/36 (38%)
Frame = +3
Query: 237 ILRYLKXXXXXXXXXXXXXXXXFFAFSDADWAGCPD 344
ILRYL +SDADWAG D
Sbjct: 1260 ILRYLNQCTSLGLNIHKSASTLVHGYSDADWAGSVD 1295
>emb|CAN67588.1| hypothetical protein VITISV_036280 [Vitis vinifera]
Length = 1379
Score = 50.8 bits (120), Expect(2) = 2e-08
Identities = 25/50 (50%), Positives = 35/50 (70%), Gaps = 3/50 (6%)
Frame = +1
Query: 94 DGAPLSDATEYRSIVGALP---LTRLDICYAINQVCQFMHALTTLHLQAV 234
+G P +D T YRS+VGAL +TR ++ ++IN V QF+HA T +H QAV
Sbjct: 555 EGTPFADPTLYRSLVGALQYLTITRPNLAHSINSVSQFLHAPTEVHFQAV 604
Score = 35.4 bits (80), Expect(2) = 2e-08
Identities = 16/37 (43%), Positives = 19/37 (51%)
Frame = +3
Query: 237 ILRYLKXXXXXXXXXXXXXXXXFFAFSDADWAGCPDT 347
ILRY++ A+SDADWAGCPDT
Sbjct: 607 ILRYVQGTLHFGLKFTSCSSMGLVAYSDADWAGCPDT 643
>emb|CAN68489.1| hypothetical protein VITISV_037543 [Vitis vinifera]
Length = 1449
Score = 54.7 bits (130), Expect(2) = 2e-08
Identities = 30/50 (60%), Positives = 33/50 (66%), Gaps = 3/50 (6%)
Frame = +1
Query: 94 DGAPLSDATEYRSIVGALP---LTRLDICYAINQVCQFMHALTTLHLQAV 234
DG P SDAT YRS VGAL LTR DI +A+N+ CQFM TT H AV
Sbjct: 1132 DGEPFSDATLYRSTVGALQYLTLTRPDISFAVNKACQFMATPTTTHWLAV 1181
Score = 31.2 bits (69), Expect(2) = 2e-08
Identities = 14/36 (38%), Positives = 16/36 (44%)
Frame = +3
Query: 237 ILRYLKXXXXXXXXXXXXXXXXFFAFSDADWAGCPD 344
ILRYLK ++DADWA CPD
Sbjct: 1184 ILRYLKGTLSYGIQMQQSTSLDIHGYTDADWASCPD 1219
>pir||T02087 gag/pol polyprotein - maize retrotransposon Hopscotch
gi|531389|gb|AAA57005.1| copia-like retrotransposon
Hopscotch polyprotein [Zea mays]
Length = 1439
Score = 53.1 bits (126), Expect(2) = 2e-08
Identities = 27/44 (61%), Positives = 33/44 (75%), Gaps = 3/44 (6%)
Frame = +1
Query: 112 DATEYRSIVGALP---LTRLDICYAINQVCQFMHALTTLHLQAV 234
+ T+YRS+VGAL LTR D+ YAIN+VCQF+HA T LH AV
Sbjct: 1211 ETTKYRSVVGALQYLTLTRPDLSYAINRVCQFLHAPTDLHWTAV 1254
Score = 32.7 bits (73), Expect(2) = 2e-08
Identities = 12/12 (100%), Positives = 12/12 (100%)
Frame = +3
Query: 309 AFSDADWAGCPD 344
AFSDADWAGCPD
Sbjct: 1281 AFSDADWAGCPD 1292
>emb|CAN67403.1| hypothetical protein VITISV_025614 [Vitis vinifera]
Length = 1271
Score = 54.7 bits (130), Expect(2) = 2e-08
Identities = 30/50 (60%), Positives = 33/50 (66%), Gaps = 3/50 (6%)
Frame = +1
Query: 94 DGAPLSDATEYRSIVGALP---LTRLDICYAINQVCQFMHALTTLHLQAV 234
DG P SDAT YRS VGAL LTR DI +A+N+ CQFM TT H AV
Sbjct: 990 DGEPFSDATLYRSTVGALQYLTLTRPDISFAVNKACQFMATPTTTHWLAV 1039
Score = 31.2 bits (69), Expect(2) = 2e-08
Identities = 14/36 (38%), Positives = 16/36 (44%)
Frame = +3
Query: 237 ILRYLKXXXXXXXXXXXXXXXXFFAFSDADWAGCPD 344
ILRYLK ++DADWA CPD
Sbjct: 1042 ILRYLKGTLSYGIQMQQSTSLDIHGYTDADWASCPD 1077
>emb|CAH66488.1| OSIGBa0076I14.9 [Oryza sativa Indica Group]
Length = 1455
Score = 50.8 bits (120), Expect(2) = 3e-08
Identities = 27/52 (51%), Positives = 34/52 (65%), Gaps = 3/52 (5%)
Frame = +1
Query: 88 AYDGAPLSDATEYRSIVGALP---LTRLDICYAINQVCQFMHALTTLHLQAV 234
A +GAP++D TEYRS+ AL LTR +I YA+ QVC+FMH HL V
Sbjct: 1217 ASEGAPVADPTEYRSLADALQYLTLTRPEIAYAVQQVCRFMHDPHEPHLALV 1268
Score = 34.7 bits (78), Expect(2) = 3e-08
Identities = 15/37 (40%), Positives = 19/37 (51%)
Frame = +3
Query: 237 ILRYLKXXXXXXXXXXXXXXXXFFAFSDADWAGCPDT 347
I+RY+K A+SDADWAGCPD+
Sbjct: 1271 IMRYIKGSLSAGLHIGTGPVGSLTAYSDADWAGCPDS 1307