BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Mentha28_contig00034263
         (540 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|EYU39881.1| hypothetical protein MIMGU_mgv1a000122mg [Mimulus...   147   2e-33
emb|CAN70028.1| hypothetical protein VITISV_029145 [Vitis vinifera]   119   6e-25
ref|XP_002277555.1| PREDICTED: DNA-directed RNA polymerase I sub...   118   1e-24
emb|CBI29879.3| unnamed protein product [Vitis vinifera]              114   2e-23
ref|XP_002526734.1| DNA-directed RNA polymerase I largest subuni...   110   2e-22
ref|XP_006351332.1| PREDICTED: DNA-directed RNA polymerase I sub...   104   2e-20
ref|XP_004249758.1| PREDICTED: DNA-directed RNA polymerase I sub...   103   3e-20
gb|EPS74252.1| hypothetical protein M569_00497, partial [Genlise...   100   4e-19
ref|XP_006493898.1| PREDICTED: DNA-directed RNA polymerase I sub...    98   1e-18
ref|XP_006421454.1| hypothetical protein CICLE_v10004132mg [Citr...    98   1e-18
ref|XP_007028854.1| Nuclear RNA polymerase A1, putative isoform ...    96   6e-18
ref|XP_007028853.1| Nuclear RNA polymerase A1, putative isoform ...    96   6e-18
ref|XP_004513648.1| PREDICTED: DNA-directed RNA polymerase I sub...    91   2e-16
ref|XP_007145632.1| hypothetical protein PHAVU_007G255400g [Phas...    88   2e-15
ref|XP_004513652.1| PREDICTED: DNA-directed RNA polymerase I sub...    87   3e-15
ref|XP_006588921.1| PREDICTED: DNA-directed RNA polymerase I sub...    85   1e-14
ref|XP_003607990.1| DNA-directed RNA polymerase subunit beta [Me...    84   2e-14
gb|EXC04356.1| DNA-directed RNA polymerase I subunit rpa1 [Morus...    84   3e-14
ref|NP_191325.1| nuclear RNA polymerase A1 [Arabidopsis thaliana...    82   1e-13
ref|XP_006290488.1| hypothetical protein CARUB_v10016563mg [Caps...    80   2e-13

>gb|EYU39881.1| hypothetical protein MIMGU_mgv1a000122mg [Mimulus guttatus]
          Length = 1719

 Score =  147 bits (370), Expect = 2e-33
 Identities = 83/163 (50%), Positives = 107/163 (65%), Gaps = 11/163 (6%)
 Frame = +3

Query: 9   EEVENYVSQLERIREGDLAGAKRLGLLQKMAKKK----IGTDP-----EESDGSHASHSG 161
           EE EN+VSQLE IR+GDLAGAK+L L      KK    + TD      E+S GSH SHS 
Sbjct: 114 EETENFVSQLELIRKGDLAGAKKLALGSSFKGKKKMVFVSTDDDTDEREDSQGSHMSHSA 173

Query: 162 VSSDGENQDEHEKDAFWDSTLLTESKSVLNEFLKKREKKCGNCKRVNPKITKPTFGWFHV 341
           V SDGEN  + ++ A W S  L E+ SV+NE+L+++ KKC NC+   PKI+KPTFGWF V
Sbjct: 174 VLSDGENHFKDDEQASWSSAQLAEAISVMNEYLRRKGKKCMNCEMRCPKISKPTFGWFQV 233

Query: 342 TGISKTE-MRSNAIRSSRLDVTYS-GDEDRPSSEVLNTSDYSL 464
            G +  + +R N IRS +LD + S G ED  SSEV+N  D+S+
Sbjct: 234 GGATSAKAIRENVIRSHKLDESDSDGGEDNFSSEVVNAGDHSM 276


>emb|CAN70028.1| hypothetical protein VITISV_029145 [Vitis vinifera]
          Length = 1350

 Score =  119 bits (297), Expect = 6e-25
 Identities = 66/151 (43%), Positives = 90/151 (59%), Gaps = 3/151 (1%)
 Frame = +3

Query: 12  EVENYVSQLERIREGDLAGAKRLGLLQKMAKKKIGTDPEESDGSHASHSGV--SSDGENQ 185
           +V+ YVSQLE I +GD+ GAK L  +           PE+SDGSH S S    SS  +N 
Sbjct: 185 QVQKYVSQLELISKGDVVGAKNLDSISPSESSY----PEDSDGSHVSCSSTVNSSARDNC 240

Query: 186 DEHEKDAFWDSTLLTESKSVLNEFLKKREKKCGNCKRVNPKITKPTFGWFHVTGISKTEM 365
             H K   W S    E+ SV++ FLK + + C NCK  +P++TKPTFGWFH+ G+S  + 
Sbjct: 241 SVHLKQQEWTSLQCIEAMSVMDNFLKLKHRDCKNCKAKSPQVTKPTFGWFHMAGLSDAQT 300

Query: 366 RSNAIRSSRLDVTYSG-DEDRPSSEVLNTSD 455
           R+N IR S+L+   S   E++ SSEV N +D
Sbjct: 301 RANVIRGSKLERPLSRVAEEKSSSEVENVND 331


>ref|XP_002277555.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA1-like [Vitis
           vinifera]
          Length = 1740

 Score =  118 bits (295), Expect = 1e-24
 Identities = 66/150 (44%), Positives = 89/150 (59%), Gaps = 3/150 (2%)
 Frame = +3

Query: 15  VENYVSQLERIREGDLAGAKRLGLLQKMAKKKIGTDPEESDGSHASHSGV--SSDGENQD 188
           V+ YVSQLE I +GD+ GAK L  +           PE+SDGSH S S    SS  +N  
Sbjct: 166 VQKYVSQLELISKGDVVGAKNLDSISPSESSY----PEDSDGSHVSCSSTVNSSARDNCS 221

Query: 189 EHEKDAFWDSTLLTESKSVLNEFLKKREKKCGNCKRVNPKITKPTFGWFHVTGISKTEMR 368
            H K   W S    E+ SV++ FLK + + C NCK  +P++TKPTFGWFH+ G+S  + R
Sbjct: 222 VHLKQQEWTSLQCIEAMSVMDNFLKLKHRDCKNCKAKSPQVTKPTFGWFHMAGLSDAQTR 281

Query: 369 SNAIRSSRLDVTYSG-DEDRPSSEVLNTSD 455
           +N IR S+L+   S   E++ SSEV N +D
Sbjct: 282 ANVIRGSKLERPLSRVAEEKSSSEVENVND 311


>emb|CBI29879.3| unnamed protein product [Vitis vinifera]
          Length = 1669

 Score =  114 bits (285), Expect = 2e-23
 Identities = 63/148 (42%), Positives = 85/148 (57%), Gaps = 3/148 (2%)
 Frame = +3

Query: 15  VENYVSQLERIREGDLAGAKRLGLLQKMAKKKIGTDPEESDGSHASHSGV--SSDGENQD 188
           V+ YVSQLE I +GD+ GAK L  +           PE+SDGSH S S    SS  +N  
Sbjct: 117 VQKYVSQLELISKGDVVGAKNLDSISPSESSY----PEDSDGSHVSCSSTVNSSARDNCS 172

Query: 189 EHEKDAFWDSTLLTESKSVLNEFLKKREKKCGNCKRVNPKITKPTFGWFHVTGISKTEMR 368
            H K   W S    E+ SV++ FLK + + C NCK  +P++TKPTFGWFH+ G+S  + R
Sbjct: 173 VHLKQQEWTSLQCIEAMSVMDNFLKLKHRDCKNCKAKSPQVTKPTFGWFHMAGLSDAQTR 232

Query: 369 SNAIRSSRLDVTYSG-DEDRPSSEVLNT 449
           +N IR S+L+   +G D D   S +  T
Sbjct: 233 ANVIRGSKLERPLNGVDTDETHSSIAPT 260


>ref|XP_002526734.1| DNA-directed RNA polymerase I largest subunit, putative [Ricinus
           communis] gi|223533923|gb|EEF35648.1| DNA-directed RNA
           polymerase I largest subunit, putative [Ricinus
           communis]
          Length = 1686

 Score =  110 bits (276), Expect = 2e-22
 Identities = 62/135 (45%), Positives = 78/135 (57%), Gaps = 4/135 (2%)
 Frame = +3

Query: 3   KKEEVENYVSQLERIREGDLAGAKRLGLLQKMAKKKIGTDPEESDGSHAS----HSGVSS 170
           ++ +VE  + QLE I +GD+ GAKRL    +         PEESD SH S    HSGV  
Sbjct: 116 QRGQVEKCIKQLELIVKGDIVGAKRL----ESVSPSEALYPEESDLSHESCPTIHSGVQC 171

Query: 171 DGENQDEHEKDAFWDSTLLTESKSVLNEFLKKREKKCGNCKRVNPKITKPTFGWFHVTGI 350
              N  EH +   W S   TE+ SVLN FLK + KKC NC+  NP ITKPTFGWFH +G+
Sbjct: 172 ---NDGEHTRQQGWTSLQFTEAMSVLNNFLKPKFKKCKNCESSNPNITKPTFGWFHTSGM 228

Query: 351 SKTEMRSNAIRSSRL 395
           S   +R+N I   +L
Sbjct: 229 SDASIRANVITGHQL 243


>ref|XP_006351332.1| PREDICTED: DNA-directed RNA polymerase I subunit rpa1-like [Solanum
           tuberosum]
          Length = 1675

 Score =  104 bits (259), Expect = 2e-20
 Identities = 61/152 (40%), Positives = 88/152 (57%), Gaps = 2/152 (1%)
 Frame = +3

Query: 6   KEEVENYVSQLERIREGDLAGAKRLGLLQKMAKKKIGTDPEESDGSHASHSGVSSDGENQ 185
           + EVE  VS+LE I +GD+ GAK +  L         TD EES+GSH S +    + ++ 
Sbjct: 109 RAEVEKCVSELELIAKGDVVGAKMIDALSP----DNSTDREESEGSHMSCAMDDLNMQDH 164

Query: 186 DEHEKDAFWDSTLLTESKSVLNEFLKKREKKCGNCKRVNPKITKPTFGWFHVTGISKTEM 365
            E+ K   WD+   TE+ +V++  LK + +KC NCK  NPKI KP+FG FH+  IS  ++
Sbjct: 165 REYNKRPSWDNFQFTEAMAVIDRILKTKTEKCSNCKAKNPKIRKPSFGRFHM-DISNKQI 223

Query: 366 RSNAIRSSRLDVTY--SGDEDRPSSEVLNTSD 455
           R N I S R    +   G E+ PS EV+N ++
Sbjct: 224 RENYINSGRRFNLHDTGGSEENPSPEVVNATE 255


>ref|XP_004249758.1| PREDICTED: DNA-directed RNA polymerase I subunit rpa1-like [Solanum
           lycopersicum]
          Length = 1677

 Score =  103 bits (256), Expect = 3e-20
 Identities = 61/152 (40%), Positives = 87/152 (57%), Gaps = 2/152 (1%)
 Frame = +3

Query: 6   KEEVENYVSQLERIREGDLAGAKRLGLLQKMAKKKIGTDPEESDGSHASHSGVSSDGENQ 185
           + EVE  VS+LE I +GD+ GAK +  L         TD EES+GSH S +    +  + 
Sbjct: 109 RAEVEKCVSELELIAKGDVVGAKMIDALSP----DNSTDREESEGSHMSCTMDDLNVRDH 164

Query: 186 DEHEKDAFWDSTLLTESKSVLNEFLKKREKKCGNCKRVNPKITKPTFGWFHVTGISKTEM 365
            E+ K   WD+   TE+ +V++  LK + +KC NCK  NPKI KP+FG FH+  IS  ++
Sbjct: 165 CEYNKRPSWDNFQFTEAMAVIDRILKTKTEKCSNCKAKNPKIRKPSFGRFHM-DISNKQI 223

Query: 366 RSNAIRSSRLDVTY--SGDEDRPSSEVLNTSD 455
           R N I S R    +   G E+ PS EV+N ++
Sbjct: 224 RENYINSGRRFNLHDTGGSEENPSPEVVNATE 255


>gb|EPS74252.1| hypothetical protein M569_00497, partial [Genlisea aurea]
          Length = 1626

 Score = 99.8 bits (247), Expect = 4e-19
 Identities = 59/143 (41%), Positives = 82/143 (57%), Gaps = 1/143 (0%)
 Frame = +3

Query: 12  EVENYVSQLERIREGDLAGAKRLGLLQKMAKKKIGTDPEESDGSHASHSGVSSDGENQDE 191
           EVE  VSQL  IR+GD+AGA+RL  L  ++         ++ GSH++ S V S+ E+  +
Sbjct: 109 EVETCVSQLHLIRKGDIAGARRLRSLGGLS---------DNQGSHSTGSVVLSESESGQD 159

Query: 192 HEKDAFWDSTLLTESKSVLNEFLKKREKKCGNCKRVNPKITKPTFGWFH-VTGISKTEMR 368
                 WDS  LTE+  VLNEF +K+EKKC NC+  +PKIT P FGWF+ V  I ++  +
Sbjct: 160 LNWCRSWDSIQLTEAMGVLNEFFRKKEKKCKNCESRSPKITNPIFGWFYAVYAIHRSSSK 219

Query: 369 SNAIRSSRLDVTYSGDEDRPSSE 437
              IR  +         D+PS E
Sbjct: 220 GTHIREGK---------DKPSPE 233


>ref|XP_006493898.1| PREDICTED: DNA-directed RNA polymerase I subunit rpa1-like [Citrus
           sinensis]
          Length = 1715

 Score = 98.2 bits (243), Expect = 1e-18
 Identities = 56/141 (39%), Positives = 78/141 (55%), Gaps = 2/141 (1%)
 Frame = +3

Query: 6   KEEVENYVSQLERIREGDLAGAKRLGLLQKMAKKKIGTDPEESDGSHASHSGVSSDGENQ 185
           + EVE  V +LE I +GD+  AK L L          ++PE+SD S+ S   + +   N 
Sbjct: 114 RREVEKCVRKLELIIKGDIIAAKSLDL----DLPSESSNPEDSDVSNKSSCSMVTPRGNY 169

Query: 186 DE--HEKDAFWDSTLLTESKSVLNEFLKKREKKCGNCKRVNPKITKPTFGWFHVTGISKT 359
           D   + K   W S    E+K  L +FLK    KCGNCK  NP+I+KPTFGW H+ G+   
Sbjct: 170 DNVRNLKPQEWTSLQFAEAKLALLQFLKIETTKCGNCKAKNPRISKPTFGWIHMNGMPHA 229

Query: 360 EMRSNAIRSSRLDVTYSGDED 422
           ++R+N IR   L  T+SG E+
Sbjct: 230 DIRANLIRGCNLGETFSGGEE 250


>ref|XP_006421454.1| hypothetical protein CICLE_v10004132mg [Citrus clementina]
           gi|557523327|gb|ESR34694.1| hypothetical protein
           CICLE_v10004132mg [Citrus clementina]
          Length = 1715

 Score = 98.2 bits (243), Expect = 1e-18
 Identities = 56/141 (39%), Positives = 78/141 (55%), Gaps = 2/141 (1%)
 Frame = +3

Query: 6   KEEVENYVSQLERIREGDLAGAKRLGLLQKMAKKKIGTDPEESDGSHASHSGVSSDGENQ 185
           + EVE  V +LE I +GD+  AK L L          ++PE+SD S+ S   + +   N 
Sbjct: 114 RREVEKCVRKLELIIKGDIIAAKSLDL----DLPSESSNPEDSDVSNKSSCSMVTPRGNY 169

Query: 186 DE--HEKDAFWDSTLLTESKSVLNEFLKKREKKCGNCKRVNPKITKPTFGWFHVTGISKT 359
           D   + K   W S    E+K  L +FLK    KCGNCK  NP+I+KPTFGW H+ G+   
Sbjct: 170 DNVRNLKPQEWTSLQFAEAKLALLQFLKIETTKCGNCKAKNPRISKPTFGWIHMNGMPHA 229

Query: 360 EMRSNAIRSSRLDVTYSGDED 422
           ++R+N IR   L  T+SG E+
Sbjct: 230 DIRANLIRGCNLGETFSGGEE 250


>ref|XP_007028854.1| Nuclear RNA polymerase A1, putative isoform 2 [Theobroma cacao]
           gi|508717459|gb|EOY09356.1| Nuclear RNA polymerase A1,
           putative isoform 2 [Theobroma cacao]
          Length = 1689

 Score = 95.9 bits (237), Expect = 6e-18
 Identities = 56/142 (39%), Positives = 71/142 (50%), Gaps = 4/142 (2%)
 Frame = +3

Query: 3   KKEEVENYVSQLERIREGDLAGAKRLGLLQKMAKKKIGTDPEESDGSHASHSGVSSDGEN 182
           +K EVE  VSQL+ I  GD+ GAKRL             D + +D S  S     S    
Sbjct: 113 EKTEVERCVSQLKLIGNGDIVGAKRL-------------DSDSADASSYSDYNEGSQESG 159

Query: 183 QDEHEKDAF----WDSTLLTESKSVLNEFLKKREKKCGNCKRVNPKITKPTFGWFHVTGI 350
              H  +A     W S  L E+ SVLN FLK +  KC NC   NP ITKP FGW H+ G+
Sbjct: 160 SIVHNSEAVKPKEWTSLQLMEAMSVLNNFLKLKYNKCKNCDAKNPNITKPVFGWLHMNGM 219

Query: 351 SKTEMRSNAIRSSRLDVTYSGD 416
              +MR N IR  ++  T+S +
Sbjct: 220 LGAQMRENVIRGCKMVDTFSDE 241


>ref|XP_007028853.1| Nuclear RNA polymerase A1, putative isoform 1 [Theobroma cacao]
           gi|508717458|gb|EOY09355.1| Nuclear RNA polymerase A1,
           putative isoform 1 [Theobroma cacao]
          Length = 1665

 Score = 95.9 bits (237), Expect = 6e-18
 Identities = 56/142 (39%), Positives = 71/142 (50%), Gaps = 4/142 (2%)
 Frame = +3

Query: 3   KKEEVENYVSQLERIREGDLAGAKRLGLLQKMAKKKIGTDPEESDGSHASHSGVSSDGEN 182
           +K EVE  VSQL+ I  GD+ GAKRL             D + +D S  S     S    
Sbjct: 113 EKTEVERCVSQLKLIGNGDIVGAKRL-------------DSDSADASSYSDYNEGSQESG 159

Query: 183 QDEHEKDAF----WDSTLLTESKSVLNEFLKKREKKCGNCKRVNPKITKPTFGWFHVTGI 350
              H  +A     W S  L E+ SVLN FLK +  KC NC   NP ITKP FGW H+ G+
Sbjct: 160 SIVHNSEAVKPKEWTSLQLMEAMSVLNNFLKLKYNKCKNCDAKNPNITKPVFGWLHMNGM 219

Query: 351 SKTEMRSNAIRSSRLDVTYSGD 416
              +MR N IR  ++  T+S +
Sbjct: 220 LGAQMRENVIRGCKMVDTFSDE 241


>ref|XP_004513648.1| PREDICTED: DNA-directed RNA polymerase I subunit rpa1-like [Cicer
           arietinum]
          Length = 1650

 Score = 90.9 bits (224), Expect = 2e-16
 Identities = 51/125 (40%), Positives = 69/125 (55%)
 Frame = +3

Query: 6   KEEVENYVSQLERIREGDLAGAKRLGLLQKMAKKKIGTDPEESDGSHASHSGVSSDGENQ 185
           + EVE   +QLE I +G++A AK L  +       +    + SDG+ +  S     GEN 
Sbjct: 114 RNEVELRANQLELIMKGNIAKAKNLDAIN------LDESADLSDGNDSQCSSDEQLGEN- 166

Query: 186 DEHEKDAFWDSTLLTESKSVLNEFLKKREKKCGNCKRVNPKITKPTFGWFHVTGISKTEM 365
                   W S   +E+ SVL +FLKK  +KC NC  +NPKITKPTFGWFHV  +S  + 
Sbjct: 167 --------WTSLQFSEAMSVLRKFLKKEFRKCQNCGNINPKITKPTFGWFHVKALSAAQA 218

Query: 366 RSNAI 380
           R+N I
Sbjct: 219 RANVI 223


>ref|XP_007145632.1| hypothetical protein PHAVU_007G255400g [Phaseolus vulgaris]
           gi|561018822|gb|ESW17626.1| hypothetical protein
           PHAVU_007G255400g [Phaseolus vulgaris]
          Length = 1637

 Score = 87.8 bits (216), Expect = 2e-15
 Identities = 54/153 (35%), Positives = 76/153 (49%), Gaps = 5/153 (3%)
 Frame = +3

Query: 6   KEEVENYVSQLERIREGDLAGAKRLGLLQKMAKKKIGTDPEESDGSHASHSGVSSDGENQ 185
           ++EVE   SQ E I +GD+  AK L          I +D     G      GV   GEN 
Sbjct: 114 RKEVEMRTSQFELIMKGDIIRAKSLD--------SIISDESNHSGDGDESQGVEQLGEN- 164

Query: 186 DEHEKDAFWDSTLLTESKSVLNEFLKKREKKCGNCKRVNPKITKPTFGWFHVTGISKTEM 365
                   W S   +E+ SVL +FL ++ KKC NC  VNP+I+KPTFGWFH+  +S  E 
Sbjct: 165 --------WSSLQFSEAMSVLRKFLLRKYKKCQNCGVVNPRISKPTFGWFHMNVLSDDEA 216

Query: 366 RSNAIRSSRL-----DVTYSGDEDRPSSEVLNT 449
           R+N +R+        D++  G E     ++ +T
Sbjct: 217 RANTMRALESETINDDMSLGGGETTEEEDITST 249


>ref|XP_004513652.1| PREDICTED: DNA-directed RNA polymerase I subunit rpa1-like [Cicer
           arietinum]
          Length = 1660

 Score = 87.0 bits (214), Expect = 3e-15
 Identities = 56/153 (36%), Positives = 80/153 (52%)
 Frame = +3

Query: 6   KEEVENYVSQLERIREGDLAGAKRLGLLQKMAKKKIGTDPEESDGSHASHSGVSSDGENQ 185
           ++EVE   +QLE I +G++A AK L  +       +    +  DG  +  S     GEN 
Sbjct: 114 RKEVELRANQLELIMKGNIAKAKNLDEIN------LDESADLCDGDDSQCSSAEQLGEN- 166

Query: 186 DEHEKDAFWDSTLLTESKSVLNEFLKKREKKCGNCKRVNPKITKPTFGWFHVTGISKTEM 365
                   W S   +E+ SVL +FLKK  +KC NC  +NPKIT PTFGWFHV  +S  + 
Sbjct: 167 --------WTSLQFSEAMSVLRKFLKKEYRKCQNCGYINPKITIPTFGWFHVKALSAAQA 218

Query: 366 RSNAIRSSRLDVTYSGDEDRPSSEVLNTSDYSL 464
           R+N I         SG++   +SE+++  D SL
Sbjct: 219 RANVI---------SGNDVSLASEIIH-DDISL 241


>ref|XP_006588921.1| PREDICTED: DNA-directed RNA polymerase I subunit rpa1-like [Glycine
           max]
          Length = 1651

 Score = 84.7 bits (208), Expect = 1e-14
 Identities = 50/132 (37%), Positives = 70/132 (53%)
 Frame = +3

Query: 9   EEVENYVSQLERIREGDLAGAKRLGLLQKMAKKKIGTDPEESDGSHASHSGVSSDGENQD 188
           +EV+   SQLE I +GD+  AKRL  +    K     +P+ES      H G   + +   
Sbjct: 115 KEVDIRTSQLELIMKGDIIRAKRLESIIP-GKSVDSFNPDES-----IHPGDGDESQCYS 168

Query: 189 EHEKDAFWDSTLLTESKSVLNEFLKKREKKCGNCKRVNPKITKPTFGWFHVTGISKTEMR 368
             +    W S   +E+ SVL + L K+ KKC  C   NPKI+KPTFGWFH+  +S  E R
Sbjct: 169 AEQLGENWTSLQFSEAMSVLRKLLTKKHKKCQKCGAKNPKISKPTFGWFHMNVLSADETR 228

Query: 369 SNAIRSSRLDVT 404
           ++ IRS   + T
Sbjct: 229 ADTIRSVESETT 240


>ref|XP_003607990.1| DNA-directed RNA polymerase subunit beta [Medicago truncatula]
           gi|355509045|gb|AES90187.1| DNA-directed RNA polymerase
           subunit beta [Medicago truncatula]
          Length = 1628

 Score = 84.3 bits (207), Expect = 2e-14
 Identities = 53/149 (35%), Positives = 79/149 (53%)
 Frame = +3

Query: 6   KEEVENYVSQLERIREGDLAGAKRLGLLQKMAKKKIGTDPEESDGSHASHSGVSSDGENQ 185
           ++EV+   SQLE I +G+++ AK LG +    K     D  + D   +  SG    GE+ 
Sbjct: 115 RDEVKRRASQLELILKGNISKAKSLGEI----KLNETIDSVDDDDDDSQWSGAEQLGES- 169

Query: 186 DEHEKDAFWDSTLLTESKSVLNEFLKKREKKCGNCKRVNPKITKPTFGWFHVTGISKTEM 365
                   W S   +E+ SV+ EFL K  KKC NC  ++PKITKPTFG F+V  +S  + 
Sbjct: 170 --------WTSLQFSEAMSVIYEFLAKDYKKCLNCGCISPKITKPTFGRFNVKALSSVQA 221

Query: 366 RSNAIRSSRLDVTYSGDEDRPSSEVLNTS 452
           R+N I S++     + +ED  S    N++
Sbjct: 222 RANVISSAKAADVQADEEDITSGGAGNSN 250


>gb|EXC04356.1| DNA-directed RNA polymerase I subunit rpa1 [Morus notabilis]
          Length = 1770

 Score = 83.6 bits (205), Expect = 3e-14
 Identities = 51/145 (35%), Positives = 70/145 (48%)
 Frame = +3

Query: 12  EVENYVSQLERIREGDLAGAKRLGLLQKMAKKKIGTDPEESDGSHASHSGVSSDGENQDE 191
           EV+  VSQLE I +GD+A AK L                 S+ SH    G     +   +
Sbjct: 58  EVKKCVSQLELILKGDVARAKDLN------------SRPSSESSHLKDYGYRGSKDRSAK 105

Query: 192 HEKDAFWDSTLLTESKSVLNEFLKKREKKCGNCKRVNPKITKPTFGWFHVTGISKTEMRS 371
                   S  L+E+ SVLN FLK    KC NC+     IT+P FGW ++  IS    R+
Sbjct: 106 PSTQPKLTSLQLSEAMSVLNNFLKPNHTKCRNCEAHRLTITQPVFGWLNMERISGARARA 165

Query: 372 NAIRSSRLDVTYSGDEDRPSSEVLN 446
           N IR+S+L+  +S  E  P  E++N
Sbjct: 166 NVIRNSKLEGPFSDGESLPEEEIIN 190


>ref|NP_191325.1| nuclear RNA polymerase A1 [Arabidopsis thaliana]
           gi|4678281|emb|CAB41189.1| DNA-directed RNA polymerase I
           190K chain-like protein [Arabidopsis thaliana]
           gi|332646163|gb|AEE79684.1| nuclear RNA polymerase A1
           [Arabidopsis thaliana]
          Length = 1670

 Score = 81.6 bits (200), Expect = 1e-13
 Identities = 47/140 (33%), Positives = 70/140 (50%)
 Frame = +3

Query: 3   KKEEVENYVSQLERIREGDLAGAKRLGLLQKMAKKKIGTDPEESDGSHASHSGVSSDGEN 182
           K E+VE  VSQL+ I +GD+  AK+L       +    T  + SD S  S     S  E 
Sbjct: 128 KPEDVERAVSQLKLIIKGDIVSAKQL-------ESNTPTKSKSSDESCESVVTTDSSEEC 180

Query: 183 QDEHEKDAFWDSTLLTESKSVLNEFLKKREKKCGNCKRVNPKITKPTFGWFHVTGISKTE 362
           +D   +D  W S    E  +VL  F++   K C  CK +NPK+ KP FGW  +  +  ++
Sbjct: 181 EDSDVEDQRWTSLQFAEVTAVLKNFMRLSSKSCSRCKGINPKLEKPMFGWVRMRAMKDSD 240

Query: 363 MRSNAIRSSRLDVTYSGDED 422
           + +N IR  +L  + S  E+
Sbjct: 241 VGANVIRGLKLKKSTSSVEN 260


>ref|XP_006290488.1| hypothetical protein CARUB_v10016563mg [Capsella rubella]
           gi|482559195|gb|EOA23386.1| hypothetical protein
           CARUB_v10016563mg [Capsella rubella]
          Length = 1651

 Score = 80.5 bits (197), Expect = 2e-13
 Identities = 47/148 (31%), Positives = 75/148 (50%), Gaps = 2/148 (1%)
 Frame = +3

Query: 3   KKEEVENYVSQLERIREGDLAGAKRLGLLQKMAKKKIGTDPEESDGSHASHSGVSSDG-- 176
           K  +V+  VSQL+ I +GD+  AK+L +      K   T     D   +  SGV++D   
Sbjct: 115 KPNDVKKCVSQLKLIMKGDIVSAKQLEV------KSDSTSTNSEDIEVSCESGVTNDSSQ 168

Query: 177 ENQDEHEKDAFWDSTLLTESKSVLNEFLKKREKKCGNCKRVNPKITKPTFGWFHVTGISK 356
           E +D   +D  W S    E  +V+  F+K   K+C  CK  NPK+ KP FGW  + G++ 
Sbjct: 169 ECEDPDMEDQRWTSLQFAEVTAVMKNFMKLTSKECNKCKAKNPKLEKPMFGWVRMKGMNA 228

Query: 357 TEMRSNAIRSSRLDVTYSGDEDRPSSEV 440
           + + +N IR  ++  + S  E+   S +
Sbjct: 229 SAVGANLIRGLKVKKSTSSVENPDDSGI 256