BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Mentha28_contig00033413
         (805 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_004232117.1| PREDICTED: pentatricopeptide repeat-containi...   204   4e-50
ref|XP_006338305.1| PREDICTED: pentatricopeptide repeat-containi...   200   6e-49
emb|CBI16896.3| unnamed protein product [Vitis vinifera]              182   9e-44
ref|XP_002278999.1| PREDICTED: pentatricopeptide repeat-containi...   182   9e-44
emb|CAN63553.1| hypothetical protein VITISV_003195 [Vitis vinifera]   182   9e-44
ref|XP_004306041.1| PREDICTED: pentatricopeptide repeat-containi...   182   1e-43
ref|XP_007215005.1| hypothetical protein PRUPE_ppa002414mg [Prun...   177   5e-42
gb|EXB85825.1| hypothetical protein L484_009671 [Morus notabilis]     174   3e-41
ref|XP_002532891.1| hypothetical protein RCOM_0447050 [Ricinus c...   174   3e-41
ref|XP_006602983.1| PREDICTED: pentatricopeptide repeat-containi...   172   2e-40
ref|XP_002882233.1| pentatricopeptide repeat-containing protein ...   169   1e-39
ref|XP_006297147.1| hypothetical protein CARUB_v10013150mg [Caps...   167   3e-39
ref|XP_007048098.1| Pentatricopeptide repeat (PPR) superfamily p...   162   1e-37
ref|XP_002871696.1| hypothetical protein ARALYDRAFT_488448 [Arab...   160   5e-37
ref|XP_002305305.1| pentatricopeptide repeat-containing family p...   160   5e-37
ref|NP_186898.1| pentatricopeptide repeat-containing protein [Ar...   159   1e-36
ref|XP_006373506.1| pentatricopeptide repeat-containing family p...   158   2e-36
gb|ABD96873.1| hypothetical protein [Cleome spinosa]                  158   2e-36
ref|XP_004141599.1| PREDICTED: pentatricopeptide repeat-containi...   158   3e-36
ref|XP_004156231.1| PREDICTED: pentatricopeptide repeat-containi...   157   3e-36

>ref|XP_004232117.1| PREDICTED: pentatricopeptide repeat-containing protein At3g02490,
           mitochondrial-like [Solanum lycopersicum]
          Length = 651

 Score =  204 bits (518), Expect = 4e-50
 Identities = 126/269 (46%), Positives = 164/269 (60%), Gaps = 14/269 (5%)
 Frame = -3

Query: 770 MRNQWH-RLLLLRCHTPSQPRIS---------QVNH-LRSFTSSIPHARAPPVFLIPF-S 627
           MRNQ    LLLLR H+ +QP IS         QVN  + S  SS  H+RA    ++P+ S
Sbjct: 1   MRNQQQWLLLLLRHHSLAQPHISRHLINQSPFQVNRSISSIASSTIHSRAS--HMLPYQS 58

Query: 626 LRRRFTSSPELAVEPPKPPSDLAALLADIFSKPEMSNDEIKTDLDAKNVIITHDLILNVL 447
           L     S+ ELAVE     SD  A+L  IFSKP  SN+EIK DL++ NV +THDL++  L
Sbjct: 59  LTVHSFSTSELAVE--HKVSDQIAVLTGIFSKPNRSNEEIKIDLESNNVTVTHDLVIRAL 116

Query: 446 KKPDIGSDVAKRIFDWVSDSKSEILSSNSYNMMLGILGGN--VNESWELIEIMKKKGYGV 273
           +  +   D A++ F+WV +++SE LSS  YN MLGILG N  V E W ++EIMK KGYGV
Sbjct: 117 RSFNTAPDAARKFFNWVKENESERLSSKVYNYMLGILGSNGFVKEFWSMVEIMKSKGYGV 176

Query: 272 KKGAFLRISERFMKDGAGDDVEKLKDLYATGSASQKNNDVAGGNSDWFRVCEIIRNHVWG 93
            +G F R  ERF K+    DVEKLK LY +  A   + +V        RVC +IR +VWG
Sbjct: 177 SRGTFNRAIERFEKEKLSGDVEKLKKLYGSELAGNSSEEVCS------RVCNLIRGNVWG 230

Query: 92  DDVEKHLKELGVEFSSDLVAKVLGILEVD 6
           DDVEK L+E   EFSS+L++ +L  LE +
Sbjct: 231 DDVEKQLRESKFEFSSELISMILEKLECE 259


>ref|XP_006338305.1| PREDICTED: pentatricopeptide repeat-containing protein At3g02490,
           mitochondrial-like [Solanum tuberosum]
          Length = 651

 Score =  200 bits (508), Expect = 6e-49
 Identities = 124/269 (46%), Positives = 165/269 (61%), Gaps = 14/269 (5%)
 Frame = -3

Query: 770 MRNQWH-RLLLLRCHTPSQPRIS---------QVNH-LRSFTSSIPHARAPPVFLIPF-S 627
           MRNQ    LLLLR H+ +QP IS         QVN  + +  SS  H+R     ++P+ S
Sbjct: 1   MRNQQRWLLLLLRHHSLAQPHISRHHINQSPFQVNRSVSTIASSTIHSRTS--HMLPYQS 58

Query: 626 LRRRFTSSPELAVEPPKPPSDLAALLADIFSKPEMSNDEIKTDLDAKNVIITHDLILNVL 447
           L  R  S+ ELAVE     SD  A+L  IFSKP  SN+EIK DL++ NV +THDL++  L
Sbjct: 59  LTVRSFSTSELAVE--HKDSDQIAVLTGIFSKPNRSNEEIKLDLESNNVTVTHDLVIRAL 116

Query: 446 KKPDIGSDVAKRIFDWVSDSKSEILSSNSYNMMLGILGGN--VNESWELIEIMKKKGYGV 273
           +  +   D A ++F+WV +++SE LSS  YN MLGILG N  V E W ++EIMK KGYGV
Sbjct: 117 RSFNTAPDAAHKLFNWVKENESERLSSKVYNYMLGILGSNGFVKEFWIMVEIMKSKGYGV 176

Query: 272 KKGAFLRISERFMKDGAGDDVEKLKDLYATGSASQKNNDVAGGNSDWFRVCEIIRNHVWG 93
            +G F R  E+F K+    D+EKLK LY +  A   + +V        RVC++IR +VWG
Sbjct: 177 SRGTFNRAIEKFEKEKLSGDLEKLKKLYGSELADNSSEEVCS------RVCKLIRGNVWG 230

Query: 92  DDVEKHLKELGVEFSSDLVAKVLGILEVD 6
           DDVEK L+E   EFSS+L++ VL  LE +
Sbjct: 231 DDVEKQLRESKFEFSSELISMVLEKLECE 259


>emb|CBI16896.3| unnamed protein product [Vitis vinifera]
          Length = 472

 Score =  182 bits (463), Expect = 9e-44
 Identities = 115/274 (41%), Positives = 161/274 (58%), Gaps = 18/274 (6%)
 Frame = -3

Query: 770 MRNQWHRLLLLRCHTPSQPRISQV------------NHLRSFTSSIP----HARAPPVFL 639
           MRNQW RLLLLR H+ S   IS +              LR F+S +     H       L
Sbjct: 1   MRNQW-RLLLLRTHSRSPLSISHIFSHFPVKSDHSSQTLRFFSSFLQGHSHHCVIDSTEL 59

Query: 638 IPFSLRRRFTSSPELAVEPPKPPSDLAALLADIFSKPEMSNDEIKTDLDAKNVIITHDLI 459
             FS  R  + S +LA+E          +  DIFSKP+   DEIK ++++ +++++H+L+
Sbjct: 60  RNFSGPRSRSFSSDLALEDKGLDH---VVFTDIFSKPK-GFDEIKNEVESSDIVVSHELV 115

Query: 458 LNVLKKPDIGSDVAKRIFDWVSDSKSEILSSNSYNMMLGILGGN--VNESWELIEIMKKK 285
           L VL+  +   +VA+ +FDWV  ++SE LSS SYN+MLGILG N  V+E W+L+E+MKKK
Sbjct: 116 LKVLENLESNPEVARSVFDWVLRAESERLSSKSYNLMLGILGSNGFVSEFWDLVEVMKKK 175

Query: 284 GYGVKKGAFLRISERFMKDGAGDDVEKLKDLYATGSASQKNNDVAGGNSDWFRVCEIIRN 105
           GYGV K A+++  E F K+  G D+EKL+ L+A+GS       +        RV +IIR+
Sbjct: 176 GYGVSKAAYVKALENFEKEALGSDLEKLRGLFASGSVDDSIQKICS------RVSKIIRS 229

Query: 104 HVWGDDVEKHLKELGVEFSSDLVAKVLGILEVDP 3
            VWGD+VE  L  L V FS DLVA VL  L ++P
Sbjct: 230 EVWGDNVEGQLHNLKVTFSGDLVAMVLENLGLEP 263


>ref|XP_002278999.1| PREDICTED: pentatricopeptide repeat-containing protein At3g02490,
           mitochondrial-like [Vitis vinifera]
          Length = 650

 Score =  182 bits (463), Expect = 9e-44
 Identities = 115/274 (41%), Positives = 161/274 (58%), Gaps = 18/274 (6%)
 Frame = -3

Query: 770 MRNQWHRLLLLRCHTPSQPRISQV------------NHLRSFTSSIP----HARAPPVFL 639
           MRNQW RLLLLR H+ S   IS +              LR F+S +     H       L
Sbjct: 1   MRNQW-RLLLLRTHSRSPLSISHIFSHFPVKSDHSSQTLRFFSSFLQGHSHHCVIDSTEL 59

Query: 638 IPFSLRRRFTSSPELAVEPPKPPSDLAALLADIFSKPEMSNDEIKTDLDAKNVIITHDLI 459
             FS  R  + S +LA+E          +  DIFSKP+   DEIK ++++ +++++H+L+
Sbjct: 60  RNFSGPRSRSFSSDLALEDKGLDH---VVFTDIFSKPK-GFDEIKNEVESSDIVVSHELV 115

Query: 458 LNVLKKPDIGSDVAKRIFDWVSDSKSEILSSNSYNMMLGILGGN--VNESWELIEIMKKK 285
           L VL+  +   +VA+ +FDWV  ++SE LSS SYN+MLGILG N  V+E W+L+E+MKKK
Sbjct: 116 LKVLENLESNPEVARSVFDWVLRAESERLSSKSYNLMLGILGSNGFVSEFWDLVEVMKKK 175

Query: 284 GYGVKKGAFLRISERFMKDGAGDDVEKLKDLYATGSASQKNNDVAGGNSDWFRVCEIIRN 105
           GYGV K A+++  E F K+  G D+EKL+ L+A+GS       +        RV +IIR+
Sbjct: 176 GYGVSKAAYVKALENFEKEALGSDLEKLRGLFASGSVDDSIQKICS------RVSKIIRS 229

Query: 104 HVWGDDVEKHLKELGVEFSSDLVAKVLGILEVDP 3
            VWGD+VE  L  L V FS DLVA VL  L ++P
Sbjct: 230 EVWGDNVEGQLHNLKVTFSGDLVAMVLENLGLEP 263


>emb|CAN63553.1| hypothetical protein VITISV_003195 [Vitis vinifera]
          Length = 650

 Score =  182 bits (463), Expect = 9e-44
 Identities = 115/274 (41%), Positives = 161/274 (58%), Gaps = 18/274 (6%)
 Frame = -3

Query: 770 MRNQWHRLLLLRCHTPSQPRISQV------------NHLRSFTSSIP----HARAPPVFL 639
           MRNQW RLLLLR H+ S   IS +              LR F+S +     H       L
Sbjct: 1   MRNQW-RLLLLRTHSRSPLSISHIFSHFPVKSDHSSQTLRFFSSFLQGHSHHCVIDSTEL 59

Query: 638 IPFSLRRRFTSSPELAVEPPKPPSDLAALLADIFSKPEMSNDEIKTDLDAKNVIITHDLI 459
             FS  R  + S +LA+E          +  DIFSKP+   DEIK ++++ +++++H+L+
Sbjct: 60  RNFSGPRSRSFSSDLALEDKGLDH---VVFTDIFSKPK-GFDEIKNEVESSDIVVSHELV 115

Query: 458 LNVLKKPDIGSDVAKRIFDWVSDSKSEILSSNSYNMMLGILGGN--VNESWELIEIMKKK 285
           L VL+  +   +VA+ +FDWV  ++SE LSS SYN+MLGILG N  V+E W+L+E+MKKK
Sbjct: 116 LKVLENLESNPEVARXVFDWVLRAESERLSSKSYNLMLGILGSNGFVSEFWDLVEVMKKK 175

Query: 284 GYGVKKGAFLRISERFMKDGAGDDVEKLKDLYATGSASQKNNDVAGGNSDWFRVCEIIRN 105
           GYGV K A+++  E F K+  G D+EKL+ L+A+GS       +        RV +IIR+
Sbjct: 176 GYGVSKAAYVKALENFEKEALGSDLEKLRGLFASGSVDNSIQKICS------RVSKIIRS 229

Query: 104 HVWGDDVEKHLKELGVEFSSDLVAKVLGILEVDP 3
            VWGD+VE  L  L V FS DLVA VL  L ++P
Sbjct: 230 EVWGDNVEGQLHNLKVTFSGDLVAMVLENLGLEP 263


>ref|XP_004306041.1| PREDICTED: pentatricopeptide repeat-containing protein At3g02490,
           mitochondrial-like [Fragaria vesca subsp. vesca]
          Length = 660

 Score =  182 bits (462), Expect = 1e-43
 Identities = 112/278 (40%), Positives = 161/278 (57%), Gaps = 22/278 (7%)
 Frame = -3

Query: 770 MRNQWHRLLLLRCHTPSQPRI-------SQV---NHLRSFTSSIPHA------RAPPVFL 639
           MR+ W RLL LR H  S P +       SQV   ++L SF+    H         PP+F 
Sbjct: 1   MRHPWQRLLRLRSHLRSSPHVRSQSSSHSQVISQSNLHSFSLFHTHTLHPKLPTLPPIFN 60

Query: 638 IPFSLR----RRFTSSPELAVEPPKPPSDLAALLADIFSKPEMSNDEIKTDLDAKNVIIT 471
            P + R    RR +S PE+  + P        ++A++FSK     D ++ +L+  NV  T
Sbjct: 61  YPLNPRNPISRRLSSEPEIESKDPGH-----GVIAEVFSKARDEID-VRKELELHNVEFT 114

Query: 470 HDLILNVLKKPDIGSDVAKRIFDWVSDSKSEILSSNSYNMMLGILG--GNVNESWELIEI 297
           HD++L+VLK  +   DVA+R+FDWV  ++ E L S SYN ML +LG  G V E WE++ +
Sbjct: 115 HDVVLSVLKSLESSPDVARRVFDWVLVNEGERLGSKSYNQMLCVLGVNGAVEEFWEMVSV 174

Query: 296 MKKKGYGVKKGAFLRISERFMKDGAGDDVEKLKDLYATGSASQKNNDVAGGNSDWFRVCE 117
           MKKKGYGV +  + R+ E+F++DG   D EKL++++A+GS    +  VA       RVC+
Sbjct: 175 MKKKGYGVSRWVYDRVLEKFVEDGLESDAEKLRNVFASGSV---DGSVAKACQ---RVCK 228

Query: 116 IIRNHVWGDDVEKHLKELGVEFSSDLVAKVLGILEVDP 3
           I+R  VW DDVE+ ++EL V FS DLV  V+  LE +P
Sbjct: 229 IVREEVWSDDVERQIRELDVVFSGDLVKMVVENLETEP 266


>ref|XP_007215005.1| hypothetical protein PRUPE_ppa002414mg [Prunus persica]
           gi|462411155|gb|EMJ16204.1| hypothetical protein
           PRUPE_ppa002414mg [Prunus persica]
          Length = 675

 Score =  177 bits (448), Expect = 5e-42
 Identities = 119/285 (41%), Positives = 162/285 (56%), Gaps = 29/285 (10%)
 Frame = -3

Query: 770 MRNQWHRLLLLRCHTPSQPRI------SQVN---HLRSFTSSIPH----------ARAPP 648
           MR+QW RLLLLR H  S P +      SQV+   +L S +S   H          + + P
Sbjct: 1   MRHQW-RLLLLRAHHRSSPHVFVKCCYSQVHSQPNLHSLSSLTSHFHTHTLDPKLSPSHP 59

Query: 647 VF----LIPFS----LRRRFTSSPELAVEPPKPPSDLAALLADIFSKPEMSNDEIKTDLD 492
           VF      P +    L R  +S P L ++     SD  A+ A+IF+K     D+I+ DL+
Sbjct: 60  VFNSHLTTPINPRNPLSRSLSSEPALELKD----SDHGAI-AEIFAK-HRGVDDIRKDLE 113

Query: 491 AKNVIITHDLILNVLKKPDIGSDVAKRIFDWVSDSKSEILSSNSYNMMLGILG--GNVNE 318
             NV+I+HDL+L VLK  +   DVA+R FDWV   + E LSS SYN MLGI G  G V+E
Sbjct: 114 LNNVVISHDLVLRVLKSLESNPDVARRFFDWVLACEGERLSSKSYNFMLGIFGVNGCVSE 173

Query: 317 SWELIEIMKKKGYGVKKGAFLRISERFMKDGAGDDVEKLKDLYATGSASQKNNDVAGGNS 138
            W+L+++MKKKGYGV K    +  E+F KDG G DVEKL+ ++A+GS     + +     
Sbjct: 174 FWDLVDVMKKKGYGVSKWVQDKALEKFEKDGLGGDVEKLRVVFASGSTDNSPDKICS--- 230

Query: 137 DWFRVCEIIRNHVWGDDVEKHLKELGVEFSSDLVAKVLGILEVDP 3
              RVC+I+RN VW  DVE+ + +L V  SSD+V  VL  L  +P
Sbjct: 231 ---RVCKIVRNEVWSGDVERKILDLNVALSSDMVKVVLENLSTEP 272


>gb|EXB85825.1| hypothetical protein L484_009671 [Morus notabilis]
          Length = 662

 Score =  174 bits (441), Expect = 3e-41
 Identities = 109/256 (42%), Positives = 153/256 (59%), Gaps = 15/256 (5%)
 Frame = -3

Query: 725 PSQPRISQVNHLRSFTSSIPHARAPPVFLIP----FSLR---------RRFTSSPELAVE 585
           PSQP +   N LRS TS + H+R+P   L P    F++          ++F+S PEL   
Sbjct: 32  PSQPNL---NSLRSLTSLL-HSRSPLGTLSPSQSIFAIDHINPGIQRFQKFSSEPELESR 87

Query: 584 PPKPPSDLAALLADIFSKPEMSNDEIKTDLDAKNVIITHDLILNVLKKPDIGSDVAKRIF 405
                SD A +++DI SK   S +EIK DL++  ++I+HDLIL VL K +   DVA+R F
Sbjct: 88  D----SDQAVIVSDILSKSNNS-EEIKKDLESNGIVISHDLILGVLGKLESSPDVARRFF 142

Query: 404 DWVSDSKSEILSSNSYNMMLGILG--GNVNESWELIEIMKKKGYGVKKGAFLRISERFMK 231
            WV +++ + LSS SYN+ML ILG  G  NE W L+E MKKKGY + KG    + E+F +
Sbjct: 143 SWVLENEEKRLSSKSYNLMLRILGVNGFANEFWVLLEGMKKKGYLISKGVRDNVLEKFEE 202

Query: 230 DGAGDDVEKLKDLYATGSASQKNNDVAGGNSDWFRVCEIIRNHVWGDDVEKHLKELGVEF 51
           +G   DVE+L  ++ +GS +     ++        VC IIRN VWGD+VEK L++L V F
Sbjct: 203 EGLDGDVERLNAVFDSGSINNSEKKISS------MVCRIIRNEVWGDNVEKQLRDLNVTF 256

Query: 50  SSDLVAKVLGILEVDP 3
           SSD+V  +L  L +DP
Sbjct: 257 SSDMVKMILESLALDP 272


>ref|XP_002532891.1| hypothetical protein RCOM_0447050 [Ricinus communis]
           gi|223527351|gb|EEF29496.1| hypothetical protein
           RCOM_0447050 [Ricinus communis]
          Length = 375

 Score =  174 bits (441), Expect = 3e-41
 Identities = 106/265 (40%), Positives = 151/265 (56%), Gaps = 21/265 (7%)
 Frame = -3

Query: 770 MRNQWHRLLLLRCHTPSQPRISQVNHLRSFTSSIPHARA--------PPVFLIPFSLRRR 615
           MR+ W RLLL R +  S  R  Q +H +  +SS+ H R+            L+ F   +R
Sbjct: 1   MRHSW-RLLLFRNYPRSSLRTHQ-HHFQVHSSSLSHIRSLYSLHTFSQQSHLLEFKNNKR 58

Query: 614 -----------FTSSPELAVEPPKPPSDLAALLADIFSKPEMSNDEIKTDLDAKNVIITH 468
                      F+S   +  E  K P     L++DIF+K    ND I  DL+  NV++ H
Sbjct: 59  INLNKGPTAYNFSSDALIESENKKEPDPQCLLISDIFTKFSDVND-ITKDLELNNVVVDH 117

Query: 467 DLILNVLKKPDIGSDVAKRIFDWVSDSKSEILSSNSYNMMLGILGGN--VNESWELIEIM 294
           +L+L VL   +   DVA++ FDWV +  SE LSS +YN+ML +LG N  V E W+L+EIM
Sbjct: 118 ELVLKVLNFLECNPDVARKFFDWVLEKDSERLSSKAYNLMLKVLGFNGFVEEFWDLVEIM 177

Query: 293 KKKGYGVKKGAFLRISERFMKDGAGDDVEKLKDLYATGSASQKNNDVAGGNSDWFRVCEI 114
           KKKGYGV +G   +++E+F KDG   D+EKLK+++A+GS       +A       R+  I
Sbjct: 178 KKKGYGVSRGTRDKVAEKFEKDGLKSDLEKLKEVFASGSVDHSLEKIA------LRMSRI 231

Query: 113 IRNHVWGDDVEKHLKELGVEFSSDL 39
           +RN VWG+DVEK +K+L   FSSD+
Sbjct: 232 VRNQVWGEDVEKQIKDLNAVFSSDM 256


>ref|XP_006602983.1| PREDICTED: pentatricopeptide repeat-containing protein At3g02490,
           mitochondrial-like isoform X1 [Glycine max]
           gi|571549695|ref|XP_006602984.1| PREDICTED:
           pentatricopeptide repeat-containing protein At3g02490,
           mitochondrial-like isoform X2 [Glycine max]
          Length = 629

 Score =  172 bits (435), Expect = 2e-40
 Identities = 116/260 (44%), Positives = 156/260 (60%), Gaps = 4/260 (1%)
 Frame = -3

Query: 770 MRNQWHRLL--LLRCHTPSQPRISQVNHLRSFTSSIPHARAPPVFLIPFSLRRRFTSSPE 597
           MR+QW RLL  LLR    S+PRI+  + +  ++SSIP   A           RRF+S P 
Sbjct: 1   MRHQW-RLLHHLLR----SRPRITYHSQVLPYSSSIPRRFAANSTFPLNPSFRRFSSEPV 55

Query: 596 LAVEPPKPPSDLAALLADIFSKPEMSNDEIKTDLDAKNVIITHDLILNVLKKPDIGSDVA 417
           LA    +  +D   L+ADIFSKP + +++ KT L +  V ITHD +L VL K D   D A
Sbjct: 56  LA----QADTD-HLLVADIFSKP-VDSEDFKTLLGSNRVSITHDAVLAVLGKFDSNVDAA 109

Query: 416 KRIFDWVSDSKSEILSSNSYNMMLGILGGN--VNESWELIEIMKKKGYGVKKGAFLRISE 243
           +R F WVS++  E LSS  YN ML +LG N  V+E W+L+ +MKKKGYGV KG   R+ E
Sbjct: 110 RRFFQWVSENHPERLSSKCYNSMLCVLGTNGFVDEFWDLVNVMKKKGYGVSKGVKERVLE 169

Query: 242 RFMKDGAGDDVEKLKDLYATGSASQKNNDVAGGNSDWFRVCEIIRNHVWGDDVEKHLKEL 63
            F K G   DV KLK L+   ++ +KN  +         VC I+RN+VWGDDVEK +++L
Sbjct: 170 SFEKGGMDGDVAKLKGLF--DNSKEKNIAI---------VCRIVRNNVWGDDVEKQIEDL 218

Query: 62  GVEFSSDLVAKVLGILEVDP 3
            V FSS++V  VL  L ++P
Sbjct: 219 NVGFSSEVVKTVLESLVLEP 238


>ref|XP_002882233.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata] gi|297328073|gb|EFH58492.1|
           pentatricopeptide repeat-containing protein [Arabidopsis
           lyrata subsp. lyrata]
          Length = 667

 Score =  169 bits (427), Expect = 1e-39
 Identities = 107/281 (38%), Positives = 157/281 (55%), Gaps = 25/281 (8%)
 Frame = -3

Query: 770 MRNQWHRLLLLRCH-TPSQPRISQ-------VNHLRSFTSSIPHA--------------- 660
           MR QW RLLL R + + S P +S         N  RSF+S +P                 
Sbjct: 1   MRYQWRRLLLFRSYRSSSHPFLSHHSQFQVISNSTRSFSSFLPERFEVGALQQRQCLLAL 60

Query: 659 RAPPVFLIPFSLRRRFTSSPELAVEPPKPPSDLAALLADIFSKPEMSNDEIKTDLDAKNV 480
           R+P    +  S+ R F+S P +  +PP        ++ DIFS+   + D+I+ +LD+ +V
Sbjct: 61  RSP----LTSSVSRSFSSDPAIEEKPPAE-----TVVIDIFSRLS-AKDDIRKELDSNDV 110

Query: 479 IITHDLILNVLKKPDIGSDVAKRIFDWVSDSKSEILSSNSYNMMLGILG--GNVNESWEL 306
           +I+H+L L VL++ +   DVA   F WV ++    LSS SYN ML ILG  G V+E WEL
Sbjct: 111 VISHELALRVLRELESSPDVAGSFFKWVLEAYPRKLSSKSYNTMLRILGVNGLVDEFWEL 170

Query: 305 IEIMKKKGYGVKKGAFLRISERFMKDGAGDDVEKLKDLYATGSASQKNNDVAGGNSDWFR 126
           ++ MKKKG+GV      ++ ++F KDG   D+E+LK+++A+GS     + V        R
Sbjct: 171 VDAMKKKGHGVSANVRNKVGDKFQKDGLESDLERLKEIFASGSMDNSVDKVCN------R 224

Query: 125 VCEIIRNHVWGDDVEKHLKELGVEFSSDLVAKVLGILEVDP 3
           VC+I+   VW  DVEK L++L +EF +DLV  VL  L+VDP
Sbjct: 225 VCKIVMKEVWSADVEKQLRDLKLEFKTDLVKMVLEKLDVDP 265


>ref|XP_006297147.1| hypothetical protein CARUB_v10013150mg [Capsella rubella]
           gi|482565856|gb|EOA30045.1| hypothetical protein
           CARUB_v10013150mg [Capsella rubella]
          Length = 666

 Score =  167 bits (424), Expect = 3e-39
 Identities = 108/277 (38%), Positives = 152/277 (54%), Gaps = 21/277 (7%)
 Frame = -3

Query: 770 MRNQWHRLLLLRCHTPSQPRISQVNHL-------RSFTSSIPHARAPPVFL--------- 639
           MR QW  LL   C + ++P +S            RSF SS+ H R+    L         
Sbjct: 1   MRYQWRFLLFRSCRSSNRPFLSHQTQFQVISSSTRSF-SSLLHERSVVGALQQRQCLFNF 59

Query: 638 ---IPFSLRRRFTSSPELAVEPPKPPSDLAALLADIFSKPEMSNDEIKTDLDAKNVIITH 468
              +  S+ R F+S P +  +PP       A + D+FS+      EI+ +LD+ +++I+H
Sbjct: 60  QSPLASSVSRSFSSEPAIKAKPPAE-----AFVIDVFSRLN-GKYEIRKELDSNDIVISH 113

Query: 467 DLILNVLKKPDIGSDVAKRIFDWVSDSKSEILSSNSYNMMLGILG--GNVNESWELIEIM 294
           DL L VL++ +   DVA R F WVSD+    LSS SYN ML ILG  G V+E W+L + M
Sbjct: 114 DLALRVLRELESRPDVAGRFFQWVSDAYPRKLSSKSYNAMLRILGVNGLVDEFWKLADAM 173

Query: 293 KKKGYGVKKGAFLRISERFMKDGAGDDVEKLKDLYATGSASQKNNDVAGGNSDWFRVCEI 114
           KK G+GV      R+ E+F KDG   D+E+LK+L+A+GS     + V        RVC+I
Sbjct: 174 KKIGHGVSASVRDRVGEKFQKDGMEGDLERLKELFASGSMDNSVDKVCN------RVCKI 227

Query: 113 IRNHVWGDDVEKHLKELGVEFSSDLVAKVLGILEVDP 3
           +   VW  DVEK L++L +EF SDLV  +L  L+VDP
Sbjct: 228 VMKEVWSADVEKQLRDLKLEFRSDLVKMILEKLDVDP 264


>ref|XP_007048098.1| Pentatricopeptide repeat (PPR) superfamily protein, putative
           [Theobroma cacao] gi|508700359|gb|EOX92255.1|
           Pentatricopeptide repeat (PPR) superfamily protein,
           putative [Theobroma cacao]
          Length = 660

 Score =  162 bits (410), Expect = 1e-37
 Identities = 107/283 (37%), Positives = 153/283 (54%), Gaps = 27/283 (9%)
 Frame = -3

Query: 770 MRNQWHRLLLLRCHTPSQPRISQVNHLRSFTSSIPHARAPPV------------FLIPFS 627
           MR+ W  LL  R   P  P +    + + F  SIPH   PP             F  PF+
Sbjct: 1   MRHPWRFLLFRRY--PRSPLLVPTMY-QVFPPSIPH---PPRTRSFHNISSHSHFTNPFN 54

Query: 626 LRRRFTS-------------SPELAVEPPKPPSDLAALLADIFSKPEMSNDEIKTDLDAK 486
           +++  +              S E AVE  K P  +   +  IF++    ND IK +L+  
Sbjct: 55  MKKELSMINCKSSTINHCSFSSEAAVEE-KEPDHVLVTVTGIFTRLNDRND-IKRELELN 112

Query: 485 NVIITHDLILNVLKKPDIGSDVAKRIFDWVSDSKSEILSSNSYNMMLGILG--GNVNESW 312
           +V+ +HD+IL VL+  +   DVA+R FD + +S  E LSS SYN+MLGILG  G V E W
Sbjct: 113 DVVFSHDMILKVLRNVESSPDVARRFFDCILESNLEKLSSKSYNLMLGILGVNGLVEEFW 172

Query: 311 ELIEIMKKKGYGVKKGAFLRISERFMKDGAGDDVEKLKDLYATGSASQKNNDVAGGNSDW 132
            L+++MK+KGYG+  G   R++ +F KD    D+E+LK ++A+GS               
Sbjct: 173 SLVDVMKQKGYGISGGVRDRVAAKFEKDVLESDLERLKGVFASGSVDSSMEKFCS----- 227

Query: 131 FRVCEIIRNHVWGDDVEKHLKELGVEFSSDLVAKVLGILEVDP 3
            RVC+I+R++VWGDDVE+ L++L V FSSDLV  VL  L  +P
Sbjct: 228 -RVCKIVRSNVWGDDVEERLRDLNVAFSSDLVKMVLENLGTEP 269


>ref|XP_002871696.1| hypothetical protein ARALYDRAFT_488448 [Arabidopsis lyrata subsp.
           lyrata] gi|297317533|gb|EFH47955.1| hypothetical protein
           ARALYDRAFT_488448 [Arabidopsis lyrata subsp. lyrata]
          Length = 608

 Score =  160 bits (405), Expect = 5e-37
 Identities = 89/211 (42%), Positives = 130/211 (61%), Gaps = 2/211 (0%)
 Frame = -3

Query: 629 SLRRRFTSSPELAVEPPKPPSDLAALLADIFSKPEMSNDEIKTDLDAKNVIITHDLILNV 450
           S+ R F+S P  AVE     S    ++ DIFS+     D+I+ +L++ +V+I+HDL L V
Sbjct: 10  SVGRSFSSEP--AVEEK---SSAEVIVIDIFSRLS-GEDDIRKELESSDVVISHDLALKV 63

Query: 449 LKKPDIGSDVAKRIFDWVSDSKSEILSSNSYNMMLGILGGN--VNESWELIEIMKKKGYG 276
           L+K +   DVAKR F W+ ++  E LSS +YNMML ILGGN  VNE W L+++MKKKG+G
Sbjct: 64  LRKLESNPDVAKRFFQWIKEASPEELSSKNYNMMLRILGGNGLVNEFWGLVDVMKKKGHG 123

Query: 275 VKKGAFLRISERFMKDGAGDDVEKLKDLYATGSASQKNNDVAGGNSDWFRVCEIIRNHVW 96
           +      ++ E+F KDG   D+ +L+ L+A+        +V        RVC+I+    W
Sbjct: 124 LSANVRDKVGEKFQKDGLESDLVRLRKLFASDCLDSSAENVCD------RVCKIVMKEEW 177

Query: 95  GDDVEKHLKELGVEFSSDLVAKVLGILEVDP 3
           GDDVEK +++L VEF SDLV  ++  L+V P
Sbjct: 178 GDDVEKRVRDLNVEFKSDLVKMIVESLDVVP 208


>ref|XP_002305305.1| pentatricopeptide repeat-containing family protein [Populus
           trichocarpa] gi|222848269|gb|EEE85816.1|
           pentatricopeptide repeat-containing family protein
           [Populus trichocarpa]
          Length = 646

 Score =  160 bits (405), Expect = 5e-37
 Identities = 108/255 (42%), Positives = 142/255 (55%), Gaps = 2/255 (0%)
 Frame = -3

Query: 761 QWHRLLLLRCHTPSQPRISQVNHLRSFTSSIPHARAPPVFLIPFSLRRRFTSSPELAVEP 582
           Q H   LLR  +PS   ++  N   S T   P+      F    +L  R  SS    VEP
Sbjct: 28  QQHSPSLLRSLSPSLHTLALQNSHFSETLQKPN------FYNKTALFARNFSSEASLVEP 81

Query: 581 PKPPSDLAALLADIFSKPEMSNDEIKTDLDAKNVIITHDLILNVLKKPDIGSDVAKRIFD 402
            K P D   L+ D F+K +   D+I  +L+  +V+I+HDL+L VLK  +   +VAKR FD
Sbjct: 82  TKDP-DHVLLVCDAFTKFD-EFDDISKELELNSVVISHDLVLKVLKSLESKPEVAKRFFD 139

Query: 401 WVSDSKSEILSSNSYNMMLGILG--GNVNESWELIEIMKKKGYGVKKGAFLRISERFMKD 228
           WV +  S  LSS SYN MLGILG  G V E W+L++ MK KG+GV      R+ E+F K+
Sbjct: 140 WVLEKDSGRLSSKSYNWMLGILGVNGLVVEFWDLVDKMKIKGHGVSGVTRDRVQEKFEKE 199

Query: 227 GAGDDVEKLKDLYATGSASQKNNDVAGGNSDWFRVCEIIRNHVWGDDVEKHLKELGVEFS 48
           G  DD+EKLK ++A GS       +        RV  I+RN VWG+DVE  +K L  EFS
Sbjct: 200 GLNDDLEKLKGVFAKGSVDNSVEKIG------LRVSRIVRNKVWGEDVEGEIKHLCAEFS 253

Query: 47  SDLVAKVLGILEVDP 3
           SDLV  VL  L ++P
Sbjct: 254 SDLVKIVLEHLVMEP 268


>ref|NP_186898.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
           gi|75264846|sp|Q9M891.1|PP208_ARATH RecName:
           Full=Pentatricopeptide repeat-containing protein
           At3g02490, mitochondrial; Flags: Precursor
           gi|6957712|gb|AAF32456.1| unknown protein [Arabidopsis
           thaliana] gi|51536500|gb|AAU05488.1| At3g02490
           [Arabidopsis thaliana] gi|56381951|gb|AAV85694.1|
           At3g02490 [Arabidopsis thaliana]
           gi|332640296|gb|AEE73817.1| pentatricopeptide
           repeat-containing protein [Arabidopsis thaliana]
          Length = 665

 Score =  159 bits (402), Expect = 1e-36
 Identities = 105/273 (38%), Positives = 150/273 (54%), Gaps = 17/273 (6%)
 Frame = -3

Query: 770 MRNQWHRLLLLRCHTPSQPRISQ-------VNHLRSFTSSIPHARAPPVFLIPFSLR--- 621
           MR QW  LL     +  +P +S         N  RSF+S +            F+LR   
Sbjct: 1   MRYQWRSLLFRSYRSSPRPFLSHHSRFQVISNSTRSFSSFLHERFGVQQRQCLFALRSPL 60

Query: 620 -----RRFTSSPELAVEPPKPPSDLAALLADIFSKPEMSNDEIKTDLDAKNVIITHDLIL 456
                RRF+S  E A+E   P      ++ D+FS+     DEI  +LD+ +V+I+H+L L
Sbjct: 61  ASSVSRRFSS--ESAIEEKLPAE---TVVIDVFSRLN-GKDEITKELDSNDVVISHELAL 114

Query: 455 NVLKKPDIGSDVAKRIFDWVSDSKSEILSSNSYNMMLGILG--GNVNESWELIEIMKKKG 282
            VL++ +   DVA R F W  ++  + LSS SYN ML I G  G V+E W L++ MKKKG
Sbjct: 115 RVLRELESSPDVAGRFFKWGLEAYPQKLSSKSYNTMLRIFGVNGLVDEFWRLVDDMKKKG 174

Query: 281 YGVKKGAFLRISERFMKDGAGDDVEKLKDLYATGSASQKNNDVAGGNSDWFRVCEIIRNH 102
           +GV      R+ ++F KDG  +D+E+LK+L+A+GS     + V        RVC+I+   
Sbjct: 175 HGVSANVRDRVGDKFKKDGLENDLERLKELFASGSMDNSVDKVCN------RVCKIVMKE 228

Query: 101 VWGDDVEKHLKELGVEFSSDLVAKVLGILEVDP 3
           VWG DVEK L++L +EF SD+V  VL  L+VDP
Sbjct: 229 VWGADVEKQLRDLKLEFKSDVVKMVLEKLDVDP 261


>ref|XP_006373506.1| pentatricopeptide repeat-containing family protein [Populus
           trichocarpa] gi|550320328|gb|ERP51303.1|
           pentatricopeptide repeat-containing family protein
           [Populus trichocarpa]
          Length = 658

 Score =  158 bits (400), Expect = 2e-36
 Identities = 97/208 (46%), Positives = 124/208 (59%), Gaps = 2/208 (0%)
 Frame = -3

Query: 620 RRFTSSPELAVEPPKPPSDLAALLADIFSKPEMSNDEIKTDLDAKNVIITHDLILNVLKK 441
           R  +S P L VEP K P DL  L+ D+F+K E S D+I  +L+  +V+I+HDL+L VLK 
Sbjct: 69  RNLSSEPSL-VEPTKDP-DLVLLVCDVFTKFEDS-DDINKELELSSVVISHDLVLKVLKS 125

Query: 440 PDIGSDVAKRIFDWVSDSKSEILSSNSYNMMLGILG--GNVNESWELIEIMKKKGYGVKK 267
                 VAKR FDWV    SE LSS SYN MLGILG  G V E WEL++ MK KGYGV  
Sbjct: 126 LGSKPGVAKRFFDWVLKKDSERLSSKSYNWMLGILGVNGLVAEFWELVDKMKTKGYGVSG 185

Query: 266 GAFLRISERFMKDGAGDDVEKLKDLYATGSASQKNNDVAGGNSDWFRVCEIIRNHVWGDD 87
               R+ E+F  +G   D+EKLK ++ATGS       +        R+  I+R+  WG+D
Sbjct: 186 VTRDRVLEKFENEGLKGDIEKLKGVFATGSIDNSVEKIG------LRMSRIVRSKFWGED 239

Query: 86  VEKHLKELGVEFSSDLVAKVLGILEVDP 3
           VE  +K L  EFSS LV  VL  L ++P
Sbjct: 240 VEGEIKGLSAEFSSGLVKIVLEHLAMEP 267


>gb|ABD96873.1| hypothetical protein [Cleome spinosa]
          Length = 666

 Score =  158 bits (400), Expect = 2e-36
 Identities = 111/283 (39%), Positives = 151/283 (53%), Gaps = 27/283 (9%)
 Frame = -3

Query: 770 MRNQWHRLLLLRCHTPSQ-PRISQVNH-------LRSFTS---------SIPHARAPPVF 642
           MR+QW RLLL R +  S  P  S  +H       LRS +S         ++   + P V 
Sbjct: 1   MRHQW-RLLLHRSYRRSHLPYPSASSHFQVTSISLRSLSSFLRPRPGDGALEQTKQPLVL 59

Query: 641 LIPF--------SLRRRFTSSPELAVEPPKPPSDLAALLADIFSKPEMSNDEIKTDLDAK 486
             P         S+ R F+S P + V   KP  D+  +  D+FS+     DEIK  LD  
Sbjct: 60  QSPLACSVSLVKSVSRNFSSEPAIDV---KPSDDVTVI--DVFSRLS-DKDEIKKLLDLS 113

Query: 485 NVIITHDLILNVLKKPDIGSDVAKRIFDWVSDSKSEILSSNSYNMMLGILG--GNVNESW 312
            ++I HDL L VL+      D AKR F WV+++ +  LSS SYNMML ILG  G V+E W
Sbjct: 114 GIVINHDLGLKVLRGLQSRPDAAKRFFQWVTEADAAKLSSKSYNMMLRILGVNGFVDEFW 173

Query: 311 ELIEIMKKKGYGVKKGAFLRISERFMKDGAGDDVEKLKDLYATGSASQKNNDVAGGNSDW 132
            L+  MKKKGYGV      ++ E+F KDG   D+E+LK+L+A+GS       V       
Sbjct: 174 GLVVDMKKKGYGVSANVRDKVGEKFQKDGLQGDLERLKELFASGSMDNSAEKVC------ 227

Query: 131 FRVCEIIRNHVWGDDVEKHLKELGVEFSSDLVAKVLGILEVDP 3
            RVC+I+    W DDVEK L++L VEF S+LV   +  L+++P
Sbjct: 228 HRVCKIVLKEEWSDDVEKRLRDLKVEFQSELVKMAVEKLDMEP 270


>ref|XP_004141599.1| PREDICTED: pentatricopeptide repeat-containing protein At3g02490,
           mitochondrial-like [Cucumis sativus]
          Length = 656

 Score =  158 bits (399), Expect = 3e-36
 Identities = 106/273 (38%), Positives = 152/273 (55%), Gaps = 17/273 (6%)
 Frame = -3

Query: 770 MRNQWHRLLLLRCH---TPSQPRISQVNH-----LRSFTSSIP-----HARAPPV--FLI 636
           MR  W RLL LR H   + +      ++H     LRS +S  P     H  +PP+  F  
Sbjct: 1   MRFSW-RLLRLRPHLRISSNSSHFQVLSHPNLQSLRSLSSLFPKHPLHHTPSPPISDFYF 59

Query: 635 PFSLRRRFTSSPELAVEPPKPPSDLAALLADIFSKPEMSNDEIKTDLDAKNVIITHDLIL 456
              +R  + +    + EP        A++ DI SK     DEI+  L++  V+I+HDL+L
Sbjct: 60  TSIVRPIYGTLRTFSSEPAAEQESDHAVIVDILSKSR-DVDEIRKGLESNGVVISHDLVL 118

Query: 455 NVLKKPDIGSDVAKRIFDWVSDSKSEILSSNSYNMMLGILG--GNVNESWELIEIMKKKG 282
            VL + +   D A R FDWVS    E LSS S+N+MLGILG  G V + W+L   MKKKG
Sbjct: 119 EVLGQLESNPDDAIRFFDWVSGDYGEKLSSKSFNLMLGILGVNGLVKKFWDLNCDMKKKG 178

Query: 281 YGVKKGAFLRISERFMKDGAGDDVEKLKDLYATGSASQKNNDVAGGNSDWFRVCEIIRNH 102
           YG+ K    ++ E+F KDG   + EKL+D++A+GS + K+ D  G N     V  +IR +
Sbjct: 179 YGMSKTVRDKVLEKFDKDGLKSEAEKLRDMFASGS-TDKSPDNIGSN-----VSRLIRTN 232

Query: 101 VWGDDVEKHLKELGVEFSSDLVAKVLGILEVDP 3
           +WG+DVE+ L+++ V FSSD+V  +L  L  DP
Sbjct: 233 LWGEDVEQQLRDMSVSFSSDMVKMILEDLSTDP 265


>ref|XP_004156231.1| PREDICTED: pentatricopeptide repeat-containing protein At3g02490,
           mitochondrial-like [Cucumis sativus]
          Length = 656

 Score =  157 bits (398), Expect = 3e-36
 Identities = 106/273 (38%), Positives = 152/273 (55%), Gaps = 17/273 (6%)
 Frame = -3

Query: 770 MRNQWHRLLLLRCH---TPSQPRISQVNH-----LRSFTSSIP-----HARAPPV--FLI 636
           MR  W RLL LR H   + +      ++H     LRS +S  P     H  +PP+  F  
Sbjct: 1   MRFSW-RLLRLRPHLRISSNSSHFQVLSHPNLQSLRSLSSLFPKHPLHHTPSPPISDFYF 59

Query: 635 PFSLRRRFTSSPELAVEPPKPPSDLAALLADIFSKPEMSNDEIKTDLDAKNVIITHDLIL 456
              +R  + +    + EP        A++ DI SK     DEI+  L++  V+I+HDL+L
Sbjct: 60  TSIVRPIYGTLRTFSSEPAAVQESDHAVIVDILSKSR-DVDEIRKGLESNGVVISHDLVL 118

Query: 455 NVLKKPDIGSDVAKRIFDWVSDSKSEILSSNSYNMMLGILG--GNVNESWELIEIMKKKG 282
            VL + +   D A R FDWVS    E LSS S+N+MLGILG  G V + W+L   MKKKG
Sbjct: 119 EVLGQLESNPDDAIRFFDWVSGDYGEKLSSKSFNLMLGILGVNGLVKKFWDLNCDMKKKG 178

Query: 281 YGVKKGAFLRISERFMKDGAGDDVEKLKDLYATGSASQKNNDVAGGNSDWFRVCEIIRNH 102
           YG+ K    ++ E+F KDG   + EKL+D++A+GS + K+ D  G N     V  +IR +
Sbjct: 179 YGMSKTVRDKVLEKFDKDGLKSEAEKLRDMFASGS-TDKSPDNIGSN-----VSRLIRTN 232

Query: 101 VWGDDVEKHLKELGVEFSSDLVAKVLGILEVDP 3
           +WG+DVE+ L+++ V FSSD+V  +L  L  DP
Sbjct: 233 LWGEDVEQQLRDMSVSFSSDMVKMILEDLSTDP 265