BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Mentha28_contig00028285
         (1073 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_006432385.1| hypothetical protein CICLE_v10000078mg [Citr...   499   e-139
ref|XP_006494574.1| PREDICTED: DNA-directed RNA polymerase III s...   498   e-138
ref|XP_006494572.1| PREDICTED: DNA-directed RNA polymerase III s...   498   e-138
ref|XP_006362214.1| PREDICTED: DNA-directed RNA polymerase III s...   497   e-138
ref|XP_004249732.1| PREDICTED: DNA-directed RNA polymerase III s...   494   e-137
ref|XP_002863522.1| hypothetical protein ARALYDRAFT_917015 [Arab...   494   e-137
ref|XP_002321360.2| hypothetical protein POPTR_0015s005302g, par...   493   e-137
ref|XP_002321356.2| hypothetical protein POPTR_0015s005302g, par...   493   e-137
ref|XP_007010805.1| DNA-directed RNA polymerase isoform 7 [Theob...   493   e-137
ref|XP_007010804.1| DNA-directed RNA polymerase isoform 6 [Theob...   493   e-137
ref|XP_007010802.1| DNA-directed RNA polymerase isoform 4 [Theob...   493   e-137
ref|XP_007010800.1| DNA-directed RNA polymerase isoform 2 [Theob...   493   e-137
ref|XP_007010799.1| DNA-directed RNA polymerase isoform 1 [Theob...   493   e-137
ref|XP_002525541.1| DNA-directed RNA polymerase III subunit, put...   490   e-136
ref|XP_006279912.1| hypothetical protein CARUB_v10025768mg [Caps...   489   e-136
ref|XP_002265454.1| PREDICTED: DNA-directed RNA polymerase III s...   488   e-135
dbj|BAB11387.1| DNA-directed RNA polymerase subunit [Arabidopsis...   485   e-134
ref|NP_199327.4| DNA-directed RNA polymerase RPC2 [Arabidopsis t...   485   e-134
ref|XP_006398163.1| hypothetical protein EUTSA_v10000748mg [Eutr...   484   e-134
ref|XP_007010803.1| DNA-directed RNA polymerase isoform 5 [Theob...   480   e-133

>ref|XP_006432385.1| hypothetical protein CICLE_v10000078mg [Citrus clementina]
            gi|557534507|gb|ESR45625.1| hypothetical protein
            CICLE_v10000078mg [Citrus clementina]
          Length = 1149

 Score =  499 bits (1285), Expect = e-139
 Identities = 250/358 (69%), Positives = 293/358 (81%), Gaps = 1/358 (0%)
 Frame = -1

Query: 1073 PVYVNIEYMNGNFDAKRVQIKKDVLIGRLPIMLRSCCCVLYGKDEEELAKYGECPLDPGG 894
            P+ VNIEY+ G+   K    K DV+IGR+PIMLRSC CVLYGKDE ELA+ GECPLDPGG
Sbjct: 116  PILVNIEYVQGSHTEKTTMEKNDVVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGG 175

Query: 893  YFIIKGTEKVILMQEQLSKNRIIIDIDKKGCVQAXXXXXXXXXXXXXXXKMEKEKIYLTL 714
            YFIIKGTEKV+L+QEQLSKNR+IID DKKG + A               +MEK K+YL L
Sbjct: 176  YFIIKGTEKVLLIQEQLSKNRVIIDTDKKGNINASVTSSTETVKSKTVIQMEKGKMYLLL 235

Query: 713  HQFTKKIPIMIVLKAMGMESDQEVVQMIGRDPRYSELLLPSIEECVKGSVHTQYQALEYL 534
            +QF KKIPIM+V+KAMGMESDQEVVQM+GRDPRYS LLLPSIEEC    ++TQ +ALEYL
Sbjct: 236  NQFVKKIPIMVVMKAMGMESDQEVVQMVGRDPRYSALLLPSIEECANLDIYTQEKALEYL 295

Query: 533  ENKVQRYQNNTRP-EKEGRALNILRDTFLANIPVHENNFRPKCIYVAVMLRRMMEAILNK 357
            E KV+R    + P ++EGRA +ILRD FLAN+PVH NNFRPKC YVAVMLRRM+EA+LNK
Sbjct: 296  EGKVKRSTFGSPPNDREGRAFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNK 355

Query: 356  DTMDDKDYVGNKRLELSGQLLALLFEDLFKTMNEEASRKMEVVLSRLSRSNRFDISQLIG 177
            D MDDKDYVGNKRLELSGQL++LLFEDLFKTM  E  + ++++LS+ SRS+RFD+SQ I 
Sbjct: 356  DAMDDKDYVGNKRLELSGQLVSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFDLSQFIV 415

Query: 176  GESITNGLERTLSTGNFDIKRFKMHRKGMTQAVARLSYIATLGFMTKISPQFEKSRKV 3
             +SIT GLERTLSTGNFD+KRFKMHRKGMTQ +ARLS+I TLG MT++SPQFEKSRKV
Sbjct: 416  RDSITVGLERTLSTGNFDVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKV 473


>ref|XP_006494574.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC2-like isoform
            X3 [Citrus sinensis]
          Length = 1058

 Score =  498 bits (1281), Expect = e-138
 Identities = 249/358 (69%), Positives = 293/358 (81%), Gaps = 1/358 (0%)
 Frame = -1

Query: 1073 PVYVNIEYMNGNFDAKRVQIKKDVLIGRLPIMLRSCCCVLYGKDEEELAKYGECPLDPGG 894
            P+ VNIEY+ G+   K    K DV+IGR+PIMLRSC CVLYGKDE ELA+ GECPLDPGG
Sbjct: 25   PILVNIEYVQGSHTEKTTMEKNDVVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGG 84

Query: 893  YFIIKGTEKVILMQEQLSKNRIIIDIDKKGCVQAXXXXXXXXXXXXXXXKMEKEKIYLTL 714
            YFIIKGTEKV+L+QEQLSKNR+IID DKKG + A               +MEK K+YL L
Sbjct: 85   YFIIKGTEKVLLIQEQLSKNRVIIDTDKKGNINASVTSSTETVKSKTVIQMEKGKMYLLL 144

Query: 713  HQFTKKIPIMIVLKAMGMESDQEVVQMIGRDPRYSELLLPSIEECVKGSVHTQYQALEYL 534
            +QF KKIPIM+V+KAMG+ESDQEVVQM+GRDPRYS LLLPSIEEC    ++TQ +ALEYL
Sbjct: 145  NQFVKKIPIMVVMKAMGIESDQEVVQMVGRDPRYSALLLPSIEECANLDIYTQEKALEYL 204

Query: 533  ENKVQRYQNNTRP-EKEGRALNILRDTFLANIPVHENNFRPKCIYVAVMLRRMMEAILNK 357
            E KV+R    + P ++EGRA +ILRD FLAN+PVH NNFRPKC YVAVMLRRM+EA+LNK
Sbjct: 205  EGKVKRSTFGSPPNDREGRAFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNK 264

Query: 356  DTMDDKDYVGNKRLELSGQLLALLFEDLFKTMNEEASRKMEVVLSRLSRSNRFDISQLIG 177
            D MDDKDYVGNKRLELSGQL++LLFEDLFKTM  E  + ++++LS+ SRS+RFD+SQ I 
Sbjct: 265  DAMDDKDYVGNKRLELSGQLVSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFDLSQFIV 324

Query: 176  GESITNGLERTLSTGNFDIKRFKMHRKGMTQAVARLSYIATLGFMTKISPQFEKSRKV 3
             +SIT GLERTLSTGNFD+KRFKMHRKGMTQ +ARLS+I TLG MT++SPQFEKSRKV
Sbjct: 325  RDSITVGLERTLSTGNFDVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKV 382


>ref|XP_006494572.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC2-like isoform
            X1 [Citrus sinensis] gi|568883651|ref|XP_006494573.1|
            PREDICTED: DNA-directed RNA polymerase III subunit
            RPC2-like isoform X2 [Citrus sinensis]
          Length = 1149

 Score =  498 bits (1281), Expect = e-138
 Identities = 249/358 (69%), Positives = 293/358 (81%), Gaps = 1/358 (0%)
 Frame = -1

Query: 1073 PVYVNIEYMNGNFDAKRVQIKKDVLIGRLPIMLRSCCCVLYGKDEEELAKYGECPLDPGG 894
            P+ VNIEY+ G+   K    K DV+IGR+PIMLRSC CVLYGKDE ELA+ GECPLDPGG
Sbjct: 116  PILVNIEYVQGSHTEKTTMEKNDVVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGG 175

Query: 893  YFIIKGTEKVILMQEQLSKNRIIIDIDKKGCVQAXXXXXXXXXXXXXXXKMEKEKIYLTL 714
            YFIIKGTEKV+L+QEQLSKNR+IID DKKG + A               +MEK K+YL L
Sbjct: 176  YFIIKGTEKVLLIQEQLSKNRVIIDTDKKGNINASVTSSTETVKSKTVIQMEKGKMYLLL 235

Query: 713  HQFTKKIPIMIVLKAMGMESDQEVVQMIGRDPRYSELLLPSIEECVKGSVHTQYQALEYL 534
            +QF KKIPIM+V+KAMG+ESDQEVVQM+GRDPRYS LLLPSIEEC    ++TQ +ALEYL
Sbjct: 236  NQFVKKIPIMVVMKAMGIESDQEVVQMVGRDPRYSALLLPSIEECANLDIYTQEKALEYL 295

Query: 533  ENKVQRYQNNTRP-EKEGRALNILRDTFLANIPVHENNFRPKCIYVAVMLRRMMEAILNK 357
            E KV+R    + P ++EGRA +ILRD FLAN+PVH NNFRPKC YVAVMLRRM+EA+LNK
Sbjct: 296  EGKVKRSTFGSPPNDREGRAFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNK 355

Query: 356  DTMDDKDYVGNKRLELSGQLLALLFEDLFKTMNEEASRKMEVVLSRLSRSNRFDISQLIG 177
            D MDDKDYVGNKRLELSGQL++LLFEDLFKTM  E  + ++++LS+ SRS+RFD+SQ I 
Sbjct: 356  DAMDDKDYVGNKRLELSGQLVSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFDLSQFIV 415

Query: 176  GESITNGLERTLSTGNFDIKRFKMHRKGMTQAVARLSYIATLGFMTKISPQFEKSRKV 3
             +SIT GLERTLSTGNFD+KRFKMHRKGMTQ +ARLS+I TLG MT++SPQFEKSRKV
Sbjct: 416  RDSITVGLERTLSTGNFDVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKV 473


>ref|XP_006362214.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC2-like isoform
            X1 [Solanum tuberosum] gi|565393087|ref|XP_006362215.1|
            PREDICTED: DNA-directed RNA polymerase III subunit
            RPC2-like isoform X2 [Solanum tuberosum]
          Length = 1153

 Score =  497 bits (1279), Expect = e-138
 Identities = 258/362 (71%), Positives = 297/362 (82%), Gaps = 5/362 (1%)
 Frame = -1

Query: 1073 PVYVNIEYMNGNFDAKRVQIKKDVLIGRLPIMLRSCCCVLYGKDEEELAKYGECPLDPGG 894
            P+YV IEY  G+     V  KK+V+IGR+PIMLRS CCVLYGKDE+ELA+ GECPLDPGG
Sbjct: 118  PIYVTIEYTTGSHGQTSVSTKKNVIIGRMPIMLRSSCCVLYGKDEDELARLGECPLDPGG 177

Query: 893  YFIIKGTEKVILMQEQLSKNRIIIDIDKKGCVQAXXXXXXXXXXXXXXXKMEKEKIYLTL 714
            YF+IKGTEKVIL+QEQLSKNRIIID DKKG VQA               KMEKEK+YL L
Sbjct: 178  YFVIKGTEKVILIQEQLSKNRIIIDTDKKGSVQASVTSSTEKTKSKTIIKMEKEKVYLEL 237

Query: 713  HQFTKKIPIMIVLKAMGMESDQEVVQMIGRDPRYSELLLPSIEECVKGSVHTQYQALEYL 534
            + F  K+PIM+V+KAMGMESDQEVVQMIGRDPR+S LLLPSIEEC    ++TQ+QALE+L
Sbjct: 238  NMFKTKVPIMVVMKAMGMESDQEVVQMIGRDPRFSALLLPSIEECADLKLYTQHQALEFL 297

Query: 533  EN----KVQRYQNNTRP-EKEGRALNILRDTFLANIPVHENNFRPKCIYVAVMLRRMMEA 369
            E+    K+  Y  +T P EK  RAL+ILRD FLAN+PVH++NFR KCIYVAVM+RRMMEA
Sbjct: 298  ESDKMLKMPSY--STGPVEKGARALSILRDIFLANVPVHQHNFRKKCIYVAVMMRRMMEA 355

Query: 368  ILNKDTMDDKDYVGNKRLELSGQLLALLFEDLFKTMNEEASRKMEVVLSRLSRSNRFDIS 189
            ILNKD MDDKDYVGNKRLELSGQLL+LLFEDLFKTMN+EA R ++ +L+R SRS+R DIS
Sbjct: 356  ILNKDAMDDKDYVGNKRLELSGQLLSLLFEDLFKTMNDEARRTIDTLLARPSRSSRLDIS 415

Query: 188  QLIGGESITNGLERTLSTGNFDIKRFKMHRKGMTQAVARLSYIATLGFMTKISPQFEKSR 9
            Q I  +SIT GLERTLSTGN+D+KRF+MHRKGMTQ VARLSYI +LG MTKISPQFEKSR
Sbjct: 416  QYIVKDSITMGLERTLSTGNWDVKRFRMHRKGMTQVVARLSYIGSLGHMTKISPQFEKSR 475

Query: 8    KV 3
            KV
Sbjct: 476  KV 477


>ref|XP_004249732.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC2-like [Solanum
            lycopersicum]
          Length = 1183

 Score =  494 bits (1272), Expect = e-137
 Identities = 257/362 (70%), Positives = 296/362 (81%), Gaps = 5/362 (1%)
 Frame = -1

Query: 1073 PVYVNIEYMNGNFDAKRVQIKKDVLIGRLPIMLRSCCCVLYGKDEEELAKYGECPLDPGG 894
            P+YV I+Y  G+     V  KK+V+IGR+PIMLRS CCVLYGKDE+ELA+ GECPLDPGG
Sbjct: 148  PIYVTIDYTTGSHGQTSVSTKKNVIIGRMPIMLRSSCCVLYGKDEDELARLGECPLDPGG 207

Query: 893  YFIIKGTEKVILMQEQLSKNRIIIDIDKKGCVQAXXXXXXXXXXXXXXXKMEKEKIYLTL 714
            YF+IKGTEKVIL+QEQLSKNRIIID DKKG VQA               KMEKEK+YL L
Sbjct: 208  YFVIKGTEKVILIQEQLSKNRIIIDTDKKGSVQASVTSSTEKTKSKTIIKMEKEKVYLEL 267

Query: 713  HQFTKKIPIMIVLKAMGMESDQEVVQMIGRDPRYSELLLPSIEECVKGSVHTQYQALEYL 534
            + F  K+PIM+V+KAMGMESDQEVVQMIGRDPR+S LLLPSIEEC    ++TQ QALE+L
Sbjct: 268  NMFKTKVPIMVVMKAMGMESDQEVVQMIGRDPRFSALLLPSIEECADLKLYTQQQALEFL 327

Query: 533  EN----KVQRYQNNTRP-EKEGRALNILRDTFLANIPVHENNFRPKCIYVAVMLRRMMEA 369
            E+    K+  Y  +T P EK  RAL+ILRD FLAN+PVH++NFR KCIYVAVM+RRMMEA
Sbjct: 328  ESDKMLKMPSY--STGPIEKGARALSILRDIFLANVPVHQHNFRKKCIYVAVMMRRMMEA 385

Query: 368  ILNKDTMDDKDYVGNKRLELSGQLLALLFEDLFKTMNEEASRKMEVVLSRLSRSNRFDIS 189
            ILNKD MDDKDYVGNKRLELSGQLL+LLFEDLFKTMN+EA R ++ +L+R SRS+R DIS
Sbjct: 386  ILNKDAMDDKDYVGNKRLELSGQLLSLLFEDLFKTMNDEARRTIDTLLARPSRSSRLDIS 445

Query: 188  QLIGGESITNGLERTLSTGNFDIKRFKMHRKGMTQAVARLSYIATLGFMTKISPQFEKSR 9
            Q I  +SIT GLERTLSTGN+D+KRF+MHRKGMTQ VARLSYI +LG MTKISPQFEKSR
Sbjct: 446  QYIIKDSITMGLERTLSTGNWDVKRFRMHRKGMTQVVARLSYIGSLGHMTKISPQFEKSR 505

Query: 8    KV 3
            KV
Sbjct: 506  KV 507


>ref|XP_002863522.1| hypothetical protein ARALYDRAFT_917015 [Arabidopsis lyrata subsp.
            lyrata] gi|297309357|gb|EFH39781.1| hypothetical protein
            ARALYDRAFT_917015 [Arabidopsis lyrata subsp. lyrata]
          Length = 1165

 Score =  494 bits (1271), Expect = e-137
 Identities = 251/361 (69%), Positives = 296/361 (81%), Gaps = 4/361 (1%)
 Frame = -1

Query: 1073 PVYVNIEYMNGNFDAKRVQIKKDVLIGRLPIMLRSCCCVLYGKDEEELAKYGECPLDPGG 894
            P+YVNIEY++G+   K   +K D +IGR+PIMLRSC CVL+GKDEEELA+ GECPLDPGG
Sbjct: 117  PIYVNIEYVHGSHGKKATSVKNDFIIGRMPIMLRSCRCVLHGKDEEELARLGECPLDPGG 176

Query: 893  YFIIKGTEKVILMQEQLSKNRIIIDIDKKGCVQAXXXXXXXXXXXXXXXKMEKEKIYLTL 714
            YF+IKGTEKV+L+QEQLSKNRIIID DKKG + A               +MEKEKIYL L
Sbjct: 177  YFVIKGTEKVLLIQEQLSKNRIIIDSDKKGNINASVTSSTEMTKSKTVIQMEKEKIYLFL 236

Query: 713  HQFTKKIPIMIVLKAMGMESDQEVVQMIGRDPRYSELLLPSIEECVKGSVHTQYQALEYL 534
            HQF KKIPI+IVLKAMGMESDQE+VQM+GRDPR+S  LLPSIEECV   V+TQ QAL+YL
Sbjct: 237  HQFVKKIPIVIVLKAMGMESDQEIVQMVGRDPRFSASLLPSIEECVSEGVNTQKQALDYL 296

Query: 533  ENKVQRYQNNTRPEKEGRALNILRDTFLANIPVHENNFRPKCIYVAVMLRRMMEAILNKD 354
            E KV++      PEK+GRAL ILRD FLA++PV +NNFR KC YV VMLRRM+EA+LNKD
Sbjct: 297  EAKVKKTSYGPPPEKDGRALYILRDLFLAHVPVRDNNFRQKCFYVGVMLRRMIEAMLNKD 356

Query: 353  TMDDKDYVGNKRLELSGQLLALLFEDLFKTMNEEASRKMEVVLSRLSRSNRFDISQ-LIG 177
            +MDDKDYVGNKRLELSGQL++LLFEDLFKTM  EA +K++ +LS+ SR++RFD SQ L  
Sbjct: 357  SMDDKDYVGNKRLELSGQLMSLLFEDLFKTMLSEAIKKVDAILSKPSRASRFDFSQYLTT 416

Query: 176  GES---ITNGLERTLSTGNFDIKRFKMHRKGMTQAVARLSYIATLGFMTKISPQFEKSRK 6
            G+S   I+ GLERTLSTGNFDIKRF+MHRKGMTQ + RLS+I +LGF+TKISPQFEKSRK
Sbjct: 417  GDSQNTISVGLERTLSTGNFDIKRFRMHRKGMTQVLTRLSFIGSLGFITKISPQFEKSRK 476

Query: 5    V 3
            V
Sbjct: 477  V 477


>ref|XP_002321360.2| hypothetical protein POPTR_0015s005302g, partial [Populus
            trichocarpa] gi|550321669|gb|EEF05487.2| hypothetical
            protein POPTR_0015s005302g, partial [Populus trichocarpa]
          Length = 1035

 Score =  493 bits (1270), Expect = e-137
 Identities = 247/359 (68%), Positives = 293/359 (81%), Gaps = 2/359 (0%)
 Frame = -1

Query: 1073 PVYVNIEYMNGNFDAKRVQIKKDVLIGRLPIMLRSCCCVLYGKDEEELAKYGECPLDPGG 894
            P+ VNIEY++G+   K   IK DV+IGR+PIMLRSCCCVLYGK+E ELA+ GECPLDPGG
Sbjct: 120  PILVNIEYISGSHGRKEKMIKNDVVIGRMPIMLRSCCCVLYGKNEAELARLGECPLDPGG 179

Query: 893  YFIIKGTEKVILMQEQLSKNRIIIDIDKKGCVQAXXXXXXXXXXXXXXXKMEKEKIYLTL 714
            YF++KGTEKVIL+QEQLSKNRIIID DKKG + A                MEKEK+YL L
Sbjct: 180  YFVVKGTEKVILIQEQLSKNRIIIDNDKKGNINASVTSSTEATKSKTVILMEKEKMYLCL 239

Query: 713  HQFTKKIPIMIVLKAMGMESDQEVVQMIGRDPRYSELLLPSIEECVKGSVHTQYQALEYL 534
            +QF KKIPIM+V+KAMGMESDQEVVQM+GRDPRYS LLLPSIEEC    V+TQ QALEYL
Sbjct: 240  NQFAKKIPIMVVMKAMGMESDQEVVQMVGRDPRYSALLLPSIEECASHGVYTQQQALEYL 299

Query: 533  ENKVQR--YQNNTRPEKEGRALNILRDTFLANIPVHENNFRPKCIYVAVMLRRMMEAILN 360
            E  V+R  Y +++  ++E RAL ILRD F+AN+PV +NNFRPKCIYVAVMLRRMMEA+LN
Sbjct: 300  EAMVKRSTYSSSSTEKQENRALAILRDVFIANVPVRKNNFRPKCIYVAVMLRRMMEALLN 359

Query: 359  KDTMDDKDYVGNKRLELSGQLLALLFEDLFKTMNEEASRKMEVVLSRLSRSNRFDISQLI 180
            KD MDDKDYVGNKRLELSGQL++LLFEDLFKTM  E  +  + +L + +RS+RFD SQ I
Sbjct: 360  KDAMDDKDYVGNKRLELSGQLISLLFEDLFKTMITEVQKTADTLLVKQNRSSRFDFSQYI 419

Query: 179  GGESITNGLERTLSTGNFDIKRFKMHRKGMTQAVARLSYIATLGFMTKISPQFEKSRKV 3
              +SITNGLER LSTGN+D+KRF+M+RKG+TQ + RLSY+A+LG MT+ISPQFEKSRKV
Sbjct: 420  VRDSITNGLERALSTGNWDVKRFRMNRKGVTQVLVRLSYMASLGHMTRISPQFEKSRKV 478


>ref|XP_002321356.2| hypothetical protein POPTR_0015s005302g, partial [Populus
            trichocarpa] gi|550321670|gb|EEF05483.2| hypothetical
            protein POPTR_0015s005302g, partial [Populus trichocarpa]
          Length = 1034

 Score =  493 bits (1269), Expect = e-137
 Identities = 248/358 (69%), Positives = 292/358 (81%), Gaps = 1/358 (0%)
 Frame = -1

Query: 1073 PVYVNIEYMNGNFDAKRVQIKKDVLIGRLPIMLRSCCCVLYGKDEEELAKYGECPLDPGG 894
            P+ VNIEY++G+   K   IK DV+IGR+PIMLRSCCCVLYGK+E ELA+ GECPLDPGG
Sbjct: 120  PILVNIEYISGSHGRKEKMIKNDVVIGRMPIMLRSCCCVLYGKNEAELARLGECPLDPGG 179

Query: 893  YFIIKGTEKVILMQEQLSKNRIIIDIDKKGCVQAXXXXXXXXXXXXXXXKMEKEKIYLTL 714
            YF++KGTEKVIL+QEQLSKNRIIID DKKG + A                MEKEK+YL L
Sbjct: 180  YFVVKGTEKVILIQEQLSKNRIIIDNDKKGNINASVTSSTEATKSKTVILMEKEKMYLCL 239

Query: 713  HQFTKKIPIMIVLKAMGMESDQEVVQMIGRDPRYSELLLPSIEECVKGSVHTQYQALEYL 534
            +QF KKIPIM+V+KAMGMESDQEVVQM+GRDPRYS LLLPSIEEC    V+TQ QALEYL
Sbjct: 240  NQFAKKIPIMVVMKAMGMESDQEVVQMVGRDPRYSALLLPSIEECASHGVYTQQQALEYL 299

Query: 533  ENKVQRYQ-NNTRPEKEGRALNILRDTFLANIPVHENNFRPKCIYVAVMLRRMMEAILNK 357
            E  V+R   +++  EKE RAL ILRD F+AN+PV +NNFRPKCIYVAVMLRRMMEA+LNK
Sbjct: 300  EAMVKRSTYSSSSTEKENRALAILRDVFIANVPVRKNNFRPKCIYVAVMLRRMMEALLNK 359

Query: 356  DTMDDKDYVGNKRLELSGQLLALLFEDLFKTMNEEASRKMEVVLSRLSRSNRFDISQLIG 177
            D MDDKDYVGNKRLELSGQL++LLFEDLFKTM  E  +  + +L + +RS+RFD SQ I 
Sbjct: 360  DAMDDKDYVGNKRLELSGQLISLLFEDLFKTMITEVQKTADTLLVKQNRSSRFDFSQYIV 419

Query: 176  GESITNGLERTLSTGNFDIKRFKMHRKGMTQAVARLSYIATLGFMTKISPQFEKSRKV 3
             +SITNGLER LSTGN+D+KRF+M+RKG+TQ + RLSY+A+LG MT+ISPQFEKSRKV
Sbjct: 420  RDSITNGLERALSTGNWDVKRFRMNRKGVTQVLVRLSYMASLGHMTRISPQFEKSRKV 477


>ref|XP_007010805.1| DNA-directed RNA polymerase isoform 7 [Theobroma cacao]
            gi|508727718|gb|EOY19615.1| DNA-directed RNA polymerase
            isoform 7 [Theobroma cacao]
          Length = 1082

 Score =  493 bits (1269), Expect = e-137
 Identities = 251/359 (69%), Positives = 290/359 (80%), Gaps = 2/359 (0%)
 Frame = -1

Query: 1073 PVYVNIEYMNGNFDAKRVQIKKDVLIGRLPIMLRSCCCVLYGKDEEELAKYGECPLDPGG 894
            P++VNIEY+ G+   K    K D++IGR+PIMLRSCCCVLYGKDE ELA+ GECPLDPGG
Sbjct: 25   PIFVNIEYIQGSHGQKTRLEKNDLVIGRMPIMLRSCCCVLYGKDEAELARLGECPLDPGG 84

Query: 893  YFIIKGTEKVILMQEQLSKNRIIIDIDKKGCVQAXXXXXXXXXXXXXXXKMEKEKIYLTL 714
            YF+IKG EKVIL+QEQLSKNRIIID DKKG + A               +MEKEKIYL L
Sbjct: 85   YFVIKGAEKVILIQEQLSKNRIIIDADKKGNINASVTSSSEATKSKTVIQMEKEKIYLLL 144

Query: 713  HQFTKKIPIMIVLKAMGMESDQEVVQMIGRDPRYSELLLPSIEECVKGSVHTQYQALEYL 534
            +QF KKIPIM+V+KAMGMESDQEVVQM+GRDP Y+ +LLPSIEEC    ++TQ QALEYL
Sbjct: 145  NQFVKKIPIMVVMKAMGMESDQEVVQMVGRDPHYNAVLLPSIEECAGVGIYTQEQALEYL 204

Query: 533  ENKVQRYQ-NNTRPEKEGRALNILRDTFLANIPVHENNFRPKCIYVAVMLRRMMEAILNK 357
            E KV+R        EKEGRAL+ILRD FLAN+PV  NNFRPKC+YVAVMLRRM+EAILNK
Sbjct: 205  ETKVKRVMYTGPASEKEGRALSILRDVFLANVPVRSNNFRPKCLYVAVMLRRMVEAILNK 264

Query: 356  DTMDDKDYVGNKRLELSGQLLALLFEDLFKTMNEEASRKMEVVLSRLSRSNRFDISQLI- 180
            D MDDKDYVGNKRLELSGQL++LLFEDLFKT   E  + +++VLS+ SRS+  D SQ + 
Sbjct: 265  DAMDDKDYVGNKRLELSGQLISLLFEDLFKTTISEVQKMIDLVLSKPSRSSALDPSQFLR 324

Query: 179  GGESITNGLERTLSTGNFDIKRFKMHRKGMTQAVARLSYIATLGFMTKISPQFEKSRKV 3
              E+IT GLERTLSTGNFDIKRFKMHRKGMTQ +ARLS+I TLG+MTK+SPQFEKSRKV
Sbjct: 325  SRETITFGLERTLSTGNFDIKRFKMHRKGMTQVLARLSFIGTLGYMTKVSPQFEKSRKV 383


>ref|XP_007010804.1| DNA-directed RNA polymerase isoform 6 [Theobroma cacao]
            gi|508727717|gb|EOY19614.1| DNA-directed RNA polymerase
            isoform 6 [Theobroma cacao]
          Length = 1034

 Score =  493 bits (1269), Expect = e-137
 Identities = 251/359 (69%), Positives = 290/359 (80%), Gaps = 2/359 (0%)
 Frame = -1

Query: 1073 PVYVNIEYMNGNFDAKRVQIKKDVLIGRLPIMLRSCCCVLYGKDEEELAKYGECPLDPGG 894
            P++VNIEY+ G+   K    K D++IGR+PIMLRSCCCVLYGKDE ELA+ GECPLDPGG
Sbjct: 124  PIFVNIEYIQGSHGQKTRLEKNDLVIGRMPIMLRSCCCVLYGKDEAELARLGECPLDPGG 183

Query: 893  YFIIKGTEKVILMQEQLSKNRIIIDIDKKGCVQAXXXXXXXXXXXXXXXKMEKEKIYLTL 714
            YF+IKG EKVIL+QEQLSKNRIIID DKKG + A               +MEKEKIYL L
Sbjct: 184  YFVIKGAEKVILIQEQLSKNRIIIDADKKGNINASVTSSSEATKSKTVIQMEKEKIYLLL 243

Query: 713  HQFTKKIPIMIVLKAMGMESDQEVVQMIGRDPRYSELLLPSIEECVKGSVHTQYQALEYL 534
            +QF KKIPIM+V+KAMGMESDQEVVQM+GRDP Y+ +LLPSIEEC    ++TQ QALEYL
Sbjct: 244  NQFVKKIPIMVVMKAMGMESDQEVVQMVGRDPHYNAVLLPSIEECAGVGIYTQEQALEYL 303

Query: 533  ENKVQRYQ-NNTRPEKEGRALNILRDTFLANIPVHENNFRPKCIYVAVMLRRMMEAILNK 357
            E KV+R        EKEGRAL+ILRD FLAN+PV  NNFRPKC+YVAVMLRRM+EAILNK
Sbjct: 304  ETKVKRVMYTGPASEKEGRALSILRDVFLANVPVRSNNFRPKCLYVAVMLRRMVEAILNK 363

Query: 356  DTMDDKDYVGNKRLELSGQLLALLFEDLFKTMNEEASRKMEVVLSRLSRSNRFDISQLI- 180
            D MDDKDYVGNKRLELSGQL++LLFEDLFKT   E  + +++VLS+ SRS+  D SQ + 
Sbjct: 364  DAMDDKDYVGNKRLELSGQLISLLFEDLFKTTISEVQKMIDLVLSKPSRSSALDPSQFLR 423

Query: 179  GGESITNGLERTLSTGNFDIKRFKMHRKGMTQAVARLSYIATLGFMTKISPQFEKSRKV 3
              E+IT GLERTLSTGNFDIKRFKMHRKGMTQ +ARLS+I TLG+MTK+SPQFEKSRKV
Sbjct: 424  SRETITFGLERTLSTGNFDIKRFKMHRKGMTQVLARLSFIGTLGYMTKVSPQFEKSRKV 482


>ref|XP_007010802.1| DNA-directed RNA polymerase isoform 4 [Theobroma cacao]
            gi|508727715|gb|EOY19612.1| DNA-directed RNA polymerase
            isoform 4 [Theobroma cacao]
          Length = 1034

 Score =  493 bits (1269), Expect = e-137
 Identities = 251/359 (69%), Positives = 290/359 (80%), Gaps = 2/359 (0%)
 Frame = -1

Query: 1073 PVYVNIEYMNGNFDAKRVQIKKDVLIGRLPIMLRSCCCVLYGKDEEELAKYGECPLDPGG 894
            P++VNIEY+ G+   K    K D++IGR+PIMLRSCCCVLYGKDE ELA+ GECPLDPGG
Sbjct: 124  PIFVNIEYIQGSHGQKTRLEKNDLVIGRMPIMLRSCCCVLYGKDEAELARLGECPLDPGG 183

Query: 893  YFIIKGTEKVILMQEQLSKNRIIIDIDKKGCVQAXXXXXXXXXXXXXXXKMEKEKIYLTL 714
            YF+IKG EKVIL+QEQLSKNRIIID DKKG + A               +MEKEKIYL L
Sbjct: 184  YFVIKGAEKVILIQEQLSKNRIIIDADKKGNINASVTSSSEATKSKTVIQMEKEKIYLLL 243

Query: 713  HQFTKKIPIMIVLKAMGMESDQEVVQMIGRDPRYSELLLPSIEECVKGSVHTQYQALEYL 534
            +QF KKIPIM+V+KAMGMESDQEVVQM+GRDP Y+ +LLPSIEEC    ++TQ QALEYL
Sbjct: 244  NQFVKKIPIMVVMKAMGMESDQEVVQMVGRDPHYNAVLLPSIEECAGVGIYTQEQALEYL 303

Query: 533  ENKVQRYQ-NNTRPEKEGRALNILRDTFLANIPVHENNFRPKCIYVAVMLRRMMEAILNK 357
            E KV+R        EKEGRAL+ILRD FLAN+PV  NNFRPKC+YVAVMLRRM+EAILNK
Sbjct: 304  ETKVKRVMYTGPASEKEGRALSILRDVFLANVPVRSNNFRPKCLYVAVMLRRMVEAILNK 363

Query: 356  DTMDDKDYVGNKRLELSGQLLALLFEDLFKTMNEEASRKMEVVLSRLSRSNRFDISQLI- 180
            D MDDKDYVGNKRLELSGQL++LLFEDLFKT   E  + +++VLS+ SRS+  D SQ + 
Sbjct: 364  DAMDDKDYVGNKRLELSGQLISLLFEDLFKTTISEVQKMIDLVLSKPSRSSALDPSQFLR 423

Query: 179  GGESITNGLERTLSTGNFDIKRFKMHRKGMTQAVARLSYIATLGFMTKISPQFEKSRKV 3
              E+IT GLERTLSTGNFDIKRFKMHRKGMTQ +ARLS+I TLG+MTK+SPQFEKSRKV
Sbjct: 424  SRETITFGLERTLSTGNFDIKRFKMHRKGMTQVLARLSFIGTLGYMTKVSPQFEKSRKV 482


>ref|XP_007010800.1| DNA-directed RNA polymerase isoform 2 [Theobroma cacao]
            gi|508727713|gb|EOY19610.1| DNA-directed RNA polymerase
            isoform 2 [Theobroma cacao]
          Length = 1011

 Score =  493 bits (1269), Expect = e-137
 Identities = 251/359 (69%), Positives = 290/359 (80%), Gaps = 2/359 (0%)
 Frame = -1

Query: 1073 PVYVNIEYMNGNFDAKRVQIKKDVLIGRLPIMLRSCCCVLYGKDEEELAKYGECPLDPGG 894
            P++VNIEY+ G+   K    K D++IGR+PIMLRSCCCVLYGKDE ELA+ GECPLDPGG
Sbjct: 124  PIFVNIEYIQGSHGQKTRLEKNDLVIGRMPIMLRSCCCVLYGKDEAELARLGECPLDPGG 183

Query: 893  YFIIKGTEKVILMQEQLSKNRIIIDIDKKGCVQAXXXXXXXXXXXXXXXKMEKEKIYLTL 714
            YF+IKG EKVIL+QEQLSKNRIIID DKKG + A               +MEKEKIYL L
Sbjct: 184  YFVIKGAEKVILIQEQLSKNRIIIDADKKGNINASVTSSSEATKSKTVIQMEKEKIYLLL 243

Query: 713  HQFTKKIPIMIVLKAMGMESDQEVVQMIGRDPRYSELLLPSIEECVKGSVHTQYQALEYL 534
            +QF KKIPIM+V+KAMGMESDQEVVQM+GRDP Y+ +LLPSIEEC    ++TQ QALEYL
Sbjct: 244  NQFVKKIPIMVVMKAMGMESDQEVVQMVGRDPHYNAVLLPSIEECAGVGIYTQEQALEYL 303

Query: 533  ENKVQRYQ-NNTRPEKEGRALNILRDTFLANIPVHENNFRPKCIYVAVMLRRMMEAILNK 357
            E KV+R        EKEGRAL+ILRD FLAN+PV  NNFRPKC+YVAVMLRRM+EAILNK
Sbjct: 304  ETKVKRVMYTGPASEKEGRALSILRDVFLANVPVRSNNFRPKCLYVAVMLRRMVEAILNK 363

Query: 356  DTMDDKDYVGNKRLELSGQLLALLFEDLFKTMNEEASRKMEVVLSRLSRSNRFDISQLI- 180
            D MDDKDYVGNKRLELSGQL++LLFEDLFKT   E  + +++VLS+ SRS+  D SQ + 
Sbjct: 364  DAMDDKDYVGNKRLELSGQLISLLFEDLFKTTISEVQKMIDLVLSKPSRSSALDPSQFLR 423

Query: 179  GGESITNGLERTLSTGNFDIKRFKMHRKGMTQAVARLSYIATLGFMTKISPQFEKSRKV 3
              E+IT GLERTLSTGNFDIKRFKMHRKGMTQ +ARLS+I TLG+MTK+SPQFEKSRKV
Sbjct: 424  SRETITFGLERTLSTGNFDIKRFKMHRKGMTQVLARLSFIGTLGYMTKVSPQFEKSRKV 482


>ref|XP_007010799.1| DNA-directed RNA polymerase isoform 1 [Theobroma cacao]
            gi|508727712|gb|EOY19609.1| DNA-directed RNA polymerase
            isoform 1 [Theobroma cacao]
          Length = 1158

 Score =  493 bits (1269), Expect = e-137
 Identities = 251/359 (69%), Positives = 290/359 (80%), Gaps = 2/359 (0%)
 Frame = -1

Query: 1073 PVYVNIEYMNGNFDAKRVQIKKDVLIGRLPIMLRSCCCVLYGKDEEELAKYGECPLDPGG 894
            P++VNIEY+ G+   K    K D++IGR+PIMLRSCCCVLYGKDE ELA+ GECPLDPGG
Sbjct: 124  PIFVNIEYIQGSHGQKTRLEKNDLVIGRMPIMLRSCCCVLYGKDEAELARLGECPLDPGG 183

Query: 893  YFIIKGTEKVILMQEQLSKNRIIIDIDKKGCVQAXXXXXXXXXXXXXXXKMEKEKIYLTL 714
            YF+IKG EKVIL+QEQLSKNRIIID DKKG + A               +MEKEKIYL L
Sbjct: 184  YFVIKGAEKVILIQEQLSKNRIIIDADKKGNINASVTSSSEATKSKTVIQMEKEKIYLLL 243

Query: 713  HQFTKKIPIMIVLKAMGMESDQEVVQMIGRDPRYSELLLPSIEECVKGSVHTQYQALEYL 534
            +QF KKIPIM+V+KAMGMESDQEVVQM+GRDP Y+ +LLPSIEEC    ++TQ QALEYL
Sbjct: 244  NQFVKKIPIMVVMKAMGMESDQEVVQMVGRDPHYNAVLLPSIEECAGVGIYTQEQALEYL 303

Query: 533  ENKVQRYQ-NNTRPEKEGRALNILRDTFLANIPVHENNFRPKCIYVAVMLRRMMEAILNK 357
            E KV+R        EKEGRAL+ILRD FLAN+PV  NNFRPKC+YVAVMLRRM+EAILNK
Sbjct: 304  ETKVKRVMYTGPASEKEGRALSILRDVFLANVPVRSNNFRPKCLYVAVMLRRMVEAILNK 363

Query: 356  DTMDDKDYVGNKRLELSGQLLALLFEDLFKTMNEEASRKMEVVLSRLSRSNRFDISQLI- 180
            D MDDKDYVGNKRLELSGQL++LLFEDLFKT   E  + +++VLS+ SRS+  D SQ + 
Sbjct: 364  DAMDDKDYVGNKRLELSGQLISLLFEDLFKTTISEVQKMIDLVLSKPSRSSALDPSQFLR 423

Query: 179  GGESITNGLERTLSTGNFDIKRFKMHRKGMTQAVARLSYIATLGFMTKISPQFEKSRKV 3
              E+IT GLERTLSTGNFDIKRFKMHRKGMTQ +ARLS+I TLG+MTK+SPQFEKSRKV
Sbjct: 424  SRETITFGLERTLSTGNFDIKRFKMHRKGMTQVLARLSFIGTLGYMTKVSPQFEKSRKV 482


>ref|XP_002525541.1| DNA-directed RNA polymerase III subunit, putative [Ricinus communis]
            gi|223535120|gb|EEF36800.1| DNA-directed RNA polymerase
            III subunit, putative [Ricinus communis]
          Length = 1139

 Score =  490 bits (1261), Expect = e-136
 Identities = 248/357 (69%), Positives = 289/357 (80%)
 Frame = -1

Query: 1073 PVYVNIEYMNGNFDAKRVQIKKDVLIGRLPIMLRSCCCVLYGKDEEELAKYGECPLDPGG 894
            P+ VN+EY+ G+ D K    K DV+IGR+PIMLRS  CVLYGKDE ELA+ GECPLDPGG
Sbjct: 122  PILVNVEYIYGSHDQKTRVEKNDVVIGRMPIMLRSRSCVLYGKDEAELARLGECPLDPGG 181

Query: 893  YFIIKGTEKVILMQEQLSKNRIIIDIDKKGCVQAXXXXXXXXXXXXXXXKMEKEKIYLTL 714
            YF+IKGTEKVIL+QEQLSKNRIIID DKKG + A               +MEKEK+YL L
Sbjct: 182  YFVIKGTEKVILIQEQLSKNRIIIDTDKKGNINASVTSSTEATKSKTIIQMEKEKMYLCL 241

Query: 713  HQFTKKIPIMIVLKAMGMESDQEVVQMIGRDPRYSELLLPSIEECVKGSVHTQYQALEYL 534
            +QF KKIPIM+V+KAMGMESDQEVVQM+GRDPRYS LLLPSIEEC   S++TQ +ALEYL
Sbjct: 242  NQFVKKIPIMVVIKAMGMESDQEVVQMVGRDPRYSALLLPSIEECAGLSIYTQQKALEYL 301

Query: 533  ENKVQRYQNNTRPEKEGRALNILRDTFLANIPVHENNFRPKCIYVAVMLRRMMEAILNKD 354
            + K            E RAL ILRD FLAN+PVH+NNFRPKC+YVAVMLRRMMEA+LNKD
Sbjct: 302  DGK------------ENRALTILRDVFLANVPVHKNNFRPKCLYVAVMLRRMMEAMLNKD 349

Query: 353  TMDDKDYVGNKRLELSGQLLALLFEDLFKTMNEEASRKMEVVLSRLSRSNRFDISQLIGG 174
             MDDKDYVGNKRLELSGQL++LLFEDLFKTM  E  R ++ VL++ +RS+RFD++Q I  
Sbjct: 350  AMDDKDYVGNKRLELSGQLISLLFEDLFKTMITEVQRTIDTVLTKQNRSSRFDLAQYIVR 409

Query: 173  ESITNGLERTLSTGNFDIKRFKMHRKGMTQAVARLSYIATLGFMTKISPQFEKSRKV 3
            ++ITNGLERTLSTGNFD+KRFKMHRKGMTQ + RLSYIA+LG MT++SPQFEKSRKV
Sbjct: 410  DNITNGLERTLSTGNFDVKRFKMHRKGMTQVLVRLSYIASLGMMTRVSPQFEKSRKV 466


>ref|XP_006279912.1| hypothetical protein CARUB_v10025768mg [Capsella rubella]
            gi|482548616|gb|EOA12810.1| hypothetical protein
            CARUB_v10025768mg [Capsella rubella]
          Length = 1160

 Score =  489 bits (1260), Expect = e-136
 Identities = 244/357 (68%), Positives = 294/357 (82%)
 Frame = -1

Query: 1073 PVYVNIEYMNGNFDAKRVQIKKDVLIGRLPIMLRSCCCVLYGKDEEELAKYGECPLDPGG 894
            P++VNIEY++G+   K+   K +VLIGR+PIMLRSC CVL GKDE+ELA+ GECPLDPGG
Sbjct: 117  PIHVNIEYVHGSHGEKQTSAKNNVLIGRMPIMLRSCRCVLNGKDEDELARLGECPLDPGG 176

Query: 893  YFIIKGTEKVILMQEQLSKNRIIIDIDKKGCVQAXXXXXXXXXXXXXXXKMEKEKIYLTL 714
            YF+IKGTEKV+L+QEQLSKNRIIID DKKG + A               +MEKE+IYL L
Sbjct: 177  YFVIKGTEKVLLIQEQLSKNRIIIDSDKKGNINASVTSSTEMTKSKTVIQMEKERIYLFL 236

Query: 713  HQFTKKIPIMIVLKAMGMESDQEVVQMIGRDPRYSELLLPSIEECVKGSVHTQYQALEYL 534
            HQF KKIPI+IVLKAMGMESDQE+VQM+GRDPR+S  LLPSIEECV   V+TQ QAL+YL
Sbjct: 237  HQFVKKIPIIIVLKAMGMESDQEIVQMVGRDPRFSASLLPSIEECVSEGVNTQKQALDYL 296

Query: 533  ENKVQRYQNNTRPEKEGRALNILRDTFLANIPVHENNFRPKCIYVAVMLRRMMEAILNKD 354
            E KV++       +K+GRAL ILRD FLA++PV +NNFR KC YV VMLRRM+EA+LNKD
Sbjct: 297  EAKVKKTSYGPPLQKDGRALYILRDLFLAHVPVRDNNFRQKCFYVGVMLRRMIEAMLNKD 356

Query: 353  TMDDKDYVGNKRLELSGQLLALLFEDLFKTMNEEASRKMEVVLSRLSRSNRFDISQLIGG 174
             MDDKDYVGNKRLELSGQL++LLFEDLFKTM  EA +K++V+L++ +R++RFD SQ + G
Sbjct: 357  AMDDKDYVGNKRLELSGQLISLLFEDLFKTMITEAIKKVDVILTKQNRASRFDFSQCLSG 416

Query: 173  ESITNGLERTLSTGNFDIKRFKMHRKGMTQAVARLSYIATLGFMTKISPQFEKSRKV 3
            + I+ GLERTLSTGNFDIKRF+MHRKGMTQ + RLS+I +LGF+TKISPQFEKSRKV
Sbjct: 417  DIISLGLERTLSTGNFDIKRFRMHRKGMTQVLTRLSFIGSLGFITKISPQFEKSRKV 473


>ref|XP_002265454.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC2 [Vitis
            vinifera]
          Length = 1142

 Score =  488 bits (1256), Expect = e-135
 Identities = 249/361 (68%), Positives = 291/361 (80%), Gaps = 4/361 (1%)
 Frame = -1

Query: 1073 PVYVNIEYMNGNFDAKRVQIKKDVLIGRLPIMLRSCCCVLYGKDEEELAKYGECPLDPGG 894
            P+ VNIEY+ G+   K    K DV+IGR+PIMLRSCCCVLY KDE ELA+ GECPLDPGG
Sbjct: 106  PILVNIEYITGSHVQKTRVEKNDVVIGRMPIMLRSCCCVLYKKDEAELARLGECPLDPGG 165

Query: 893  YFIIKGTEKVILMQEQLSKNRIIIDIDKKGCVQAXXXXXXXXXXXXXXXKMEKEKIYLTL 714
            YF++KGTEKVIL+QEQLSKNRIIID DKKG + A                MEKEKI+L L
Sbjct: 166  YFVVKGTEKVILIQEQLSKNRIIIDTDKKGNINASVTSSTESTKSKTVIVMEKEKIWLQL 225

Query: 713  HQFTKKIPIMIVLKAMGMESDQEVVQMIGRDPRYSELLLPSIEECVKGSVHTQYQALEYL 534
            +QFT KIPIMIV+KAMGMESDQEVVQM+GR+PRYS LLLPS+EEC    ++TQ QALE+L
Sbjct: 226  NQFTSKIPIMIVMKAMGMESDQEVVQMVGRNPRYSALLLPSMEECASHGIYTQQQALEFL 285

Query: 533  ENKVQRYQ-NNTRPEKEGRALNILRDTFLANIPVHENNFRPKCIYVAVMLRRMMEAILNK 357
            E KV++    N   EKEGR + ILRDTF+AN+PV +NNFRPKC+YVAVMLRRMM+AILNK
Sbjct: 286  ERKVKKLPFYNPSLEKEGRGMAILRDTFIANVPVRQNNFRPKCLYVAVMLRRMMDAILNK 345

Query: 356  DTMDDKDYVGNKRLELSGQLLALLFEDLFKTMNEEASRKMEVVLSRLSRSNRFDISQ--- 186
            D MDDKDYVGNKRLELSGQL++LLFEDLFKTM  E  + ++ +L++ SRS+RFD SQ   
Sbjct: 346  DAMDDKDYVGNKRLELSGQLISLLFEDLFKTMISEVKKTIDAILAKPSRSSRFDFSQCLR 405

Query: 185  LIGGESITNGLERTLSTGNFDIKRFKMHRKGMTQAVARLSYIATLGFMTKISPQFEKSRK 6
             I  +SIT GLERTLSTGN+D+KRF+MHRKGM+Q VARLSYI +LG MTKISPQFEKSRK
Sbjct: 406  FIVRDSITVGLERTLSTGNWDVKRFRMHRKGMSQVVARLSYIGSLGHMTKISPQFEKSRK 465

Query: 5    V 3
            V
Sbjct: 466  V 466


>dbj|BAB11387.1| DNA-directed RNA polymerase subunit [Arabidopsis thaliana]
          Length = 1194

 Score =  485 bits (1248), Expect = e-134
 Identities = 245/360 (68%), Positives = 294/360 (81%), Gaps = 3/360 (0%)
 Frame = -1

Query: 1073 PVYVNIEYMNGNFDAKRVQIKKDVLIGRLPIMLRSCCCVLYGKDEEELAKYGECPLDPGG 894
            P++VNIEY++G+   K    K +V+IGR+PIMLRSC CVL+GKDEEELA+ GECPLDPGG
Sbjct: 138  PIFVNIEYVHGSHGNKAKSAKDNVIIGRMPIMLRSCRCVLHGKDEEELARLGECPLDPGG 197

Query: 893  YFIIKGTEKVILMQEQLSKNRIIIDIDKKGCVQAXXXXXXXXXXXXXXXKMEKEKIYLTL 714
            YFIIKGTEKV+L+QEQLSKNRIIID DKKG + A               +MEKEKIYL L
Sbjct: 198  YFIIKGTEKVLLIQEQLSKNRIIIDSDKKGNINASVTSSTEMTKSKTVIQMEKEKIYLFL 257

Query: 713  HQFTKKIPIMIVLKAMGMESDQEVVQMIGRDPRYSELLLPSIEECVKGSVHTQYQALEYL 534
            H+F KKIPI+IVLKAMGMESDQE+VQM+GRDPR+S  LLPSIEECV   V+TQ QAL+YL
Sbjct: 258  HRFVKKIPIIIVLKAMGMESDQEIVQMVGRDPRFSASLLPSIEECVSEGVNTQKQALDYL 317

Query: 533  ENKVQRYQNNTRPEKEGRALNILRDTFLANIPVHENNFRPKCIYVAVMLRRMMEAILNKD 354
            E KV++    T PEK+GRAL+ILRD FLA++PV +NNFR KC YV VMLRRM+EA+LNKD
Sbjct: 318  EAKVKKISYGTPPEKDGRALSILRDLFLAHVPVPDNNFRQKCFYVGVMLRRMIEAMLNKD 377

Query: 353  TMDDKDYVGNKRLELSGQLLALLFEDLFKTMNEEASRKMEVVLSRLSRSNRFDISQLIGG 174
             MDDKDYVGNKRLELSGQL++LLFEDLFKTM  EA + ++ +L++  R++RFD SQ +  
Sbjct: 378  AMDDKDYVGNKRLELSGQLISLLFEDLFKTMLSEAIKNVDHILNKPIRASRFDFSQCLNK 437

Query: 173  E---SITNGLERTLSTGNFDIKRFKMHRKGMTQAVARLSYIATLGFMTKISPQFEKSRKV 3
            +   SI+ GLERTLSTGNFDIKRF+MHRKGMTQ + RLS+I ++GF+TKISPQFEKSRKV
Sbjct: 438  DSRYSISLGLERTLSTGNFDIKRFRMHRKGMTQVLTRLSFIGSMGFITKISPQFEKSRKV 497


>ref|NP_199327.4| DNA-directed RNA polymerase RPC2 [Arabidopsis thaliana]
            gi|332007826|gb|AED95209.1| DNA-directed RNA polymerase
            RPC2 [Arabidopsis thaliana]
          Length = 1161

 Score =  485 bits (1248), Expect = e-134
 Identities = 245/360 (68%), Positives = 294/360 (81%), Gaps = 3/360 (0%)
 Frame = -1

Query: 1073 PVYVNIEYMNGNFDAKRVQIKKDVLIGRLPIMLRSCCCVLYGKDEEELAKYGECPLDPGG 894
            P++VNIEY++G+   K    K +V+IGR+PIMLRSC CVL+GKDEEELA+ GECPLDPGG
Sbjct: 117  PIFVNIEYVHGSHGNKAKSAKDNVIIGRMPIMLRSCRCVLHGKDEEELARLGECPLDPGG 176

Query: 893  YFIIKGTEKVILMQEQLSKNRIIIDIDKKGCVQAXXXXXXXXXXXXXXXKMEKEKIYLTL 714
            YFIIKGTEKV+L+QEQLSKNRIIID DKKG + A               +MEKEKIYL L
Sbjct: 177  YFIIKGTEKVLLIQEQLSKNRIIIDSDKKGNINASVTSSTEMTKSKTVIQMEKEKIYLFL 236

Query: 713  HQFTKKIPIMIVLKAMGMESDQEVVQMIGRDPRYSELLLPSIEECVKGSVHTQYQALEYL 534
            H+F KKIPI+IVLKAMGMESDQE+VQM+GRDPR+S  LLPSIEECV   V+TQ QAL+YL
Sbjct: 237  HRFVKKIPIIIVLKAMGMESDQEIVQMVGRDPRFSASLLPSIEECVSEGVNTQKQALDYL 296

Query: 533  ENKVQRYQNNTRPEKEGRALNILRDTFLANIPVHENNFRPKCIYVAVMLRRMMEAILNKD 354
            E KV++    T PEK+GRAL+ILRD FLA++PV +NNFR KC YV VMLRRM+EA+LNKD
Sbjct: 297  EAKVKKISYGTPPEKDGRALSILRDLFLAHVPVPDNNFRQKCFYVGVMLRRMIEAMLNKD 356

Query: 353  TMDDKDYVGNKRLELSGQLLALLFEDLFKTMNEEASRKMEVVLSRLSRSNRFDISQLIGG 174
             MDDKDYVGNKRLELSGQL++LLFEDLFKTM  EA + ++ +L++  R++RFD SQ +  
Sbjct: 357  AMDDKDYVGNKRLELSGQLISLLFEDLFKTMLSEAIKNVDHILNKPIRASRFDFSQCLNK 416

Query: 173  E---SITNGLERTLSTGNFDIKRFKMHRKGMTQAVARLSYIATLGFMTKISPQFEKSRKV 3
            +   SI+ GLERTLSTGNFDIKRF+MHRKGMTQ + RLS+I ++GF+TKISPQFEKSRKV
Sbjct: 417  DSRYSISLGLERTLSTGNFDIKRFRMHRKGMTQVLTRLSFIGSMGFITKISPQFEKSRKV 476


>ref|XP_006398163.1| hypothetical protein EUTSA_v10000748mg [Eutrema salsugineum]
            gi|557099252|gb|ESQ39616.1| hypothetical protein
            EUTSA_v10000748mg [Eutrema salsugineum]
          Length = 1164

 Score =  484 bits (1245), Expect = e-134
 Identities = 245/360 (68%), Positives = 292/360 (81%), Gaps = 3/360 (0%)
 Frame = -1

Query: 1073 PVYVNIEYMNGNFDAKRVQIKKDVLIGRLPIMLRSCCCVLYGKDEEELAKYGECPLDPGG 894
            P+YVNIEY +G+    +   K +V+IGR+PIMLRSC CVL+GKDEEELA+ GECPLDPGG
Sbjct: 117  PIYVNIEYAHGSHGKTQHSAKDNVIIGRMPIMLRSCRCVLHGKDEEELARLGECPLDPGG 176

Query: 893  YFIIKGTEKVILMQEQLSKNRIIIDIDKKGCVQAXXXXXXXXXXXXXXXKMEKEKIYLTL 714
            YF+IKGTEKV+L+QEQLSKNRIIID DKKG + A               +MEK KIYL L
Sbjct: 177  YFVIKGTEKVLLIQEQLSKNRIIIDSDKKGNINASVTSSTEMTKSKTVIQMEKGKIYLFL 236

Query: 713  HQFTKKIPIMIVLKAMGMESDQEVVQMIGRDPRYSELLLPSIEECVKGSVHTQYQALEYL 534
            HQF KKIPI+IVLKAMGMESDQE+VQM+GRDPR+S  LLPSIEECV   V+T+ QAL+YL
Sbjct: 237  HQFVKKIPIIIVLKAMGMESDQEIVQMVGRDPRFSASLLPSIEECVSEGVNTRKQALDYL 296

Query: 533  ENKVQRYQNNTRPEKEGRALNILRDTFLANIPVHENNFRPKCIYVAVMLRRMMEAILNKD 354
            E KV++      PEK+GRAL ILRD FLA++PV +NNFR KC YV VMLRRM+EA+LNKD
Sbjct: 297  EAKVKKTSYGPPPEKDGRALYILRDVFLAHVPVRDNNFRQKCFYVGVMLRRMIEAMLNKD 356

Query: 353  TMDDKDYVGNKRLELSGQLLALLFEDLFKTMNEEASRKMEVVLSRLSRSNRFDISQLIGG 174
             MDDKDYVGNKRLELSGQL++LLFEDLFKTM  EA +K++ +L + +R++RFD SQ + G
Sbjct: 357  AMDDKDYVGNKRLELSGQLISLLFEDLFKTMITEAVKKVDGILQKPNRASRFDFSQCLTG 416

Query: 173  E---SITNGLERTLSTGNFDIKRFKMHRKGMTQAVARLSYIATLGFMTKISPQFEKSRKV 3
            E   +I+ GLERTLSTGNFDIKRF+MHRKGMTQ + RLS+I +LGF+TKISPQFEKSRKV
Sbjct: 417  EKNHNISFGLERTLSTGNFDIKRFRMHRKGMTQVLTRLSFIGSLGFITKISPQFEKSRKV 476


>ref|XP_007010803.1| DNA-directed RNA polymerase isoform 5 [Theobroma cacao]
            gi|508727716|gb|EOY19613.1| DNA-directed RNA polymerase
            isoform 5 [Theobroma cacao]
          Length = 1006

 Score =  480 bits (1235), Expect = e-133
 Identities = 247/359 (68%), Positives = 285/359 (79%), Gaps = 2/359 (0%)
 Frame = -1

Query: 1073 PVYVNIEYMNGNFDAKRVQIKKDVLIGRLPIMLRSCCCVLYGKDEEELAKYGECPLDPGG 894
            P++VNIEY+ G+   K    K D++IGR+PIMLRSCCCVLYGKDE ELA+ GECPLDPGG
Sbjct: 124  PIFVNIEYIQGSHGQKTRLEKNDLVIGRMPIMLRSCCCVLYGKDEAELARLGECPLDPGG 183

Query: 893  YFIIKGTEKVILMQEQLSKNRIIIDIDKKGCVQAXXXXXXXXXXXXXXXKMEKEKIYLTL 714
            YF+IKG EK     EQLSKNRIIID DKKG + A               +MEKEKIYL L
Sbjct: 184  YFVIKGAEK-----EQLSKNRIIIDADKKGNINASVTSSSEATKSKTVIQMEKEKIYLLL 238

Query: 713  HQFTKKIPIMIVLKAMGMESDQEVVQMIGRDPRYSELLLPSIEECVKGSVHTQYQALEYL 534
            +QF KKIPIM+V+KAMGMESDQEVVQM+GRDP Y+ +LLPSIEEC    ++TQ QALEYL
Sbjct: 239  NQFVKKIPIMVVMKAMGMESDQEVVQMVGRDPHYNAVLLPSIEECAGVGIYTQEQALEYL 298

Query: 533  ENKVQRYQ-NNTRPEKEGRALNILRDTFLANIPVHENNFRPKCIYVAVMLRRMMEAILNK 357
            E KV+R        EKEGRAL+ILRD FLAN+PV  NNFRPKC+YVAVMLRRM+EAILNK
Sbjct: 299  ETKVKRVMYTGPASEKEGRALSILRDVFLANVPVRSNNFRPKCLYVAVMLRRMVEAILNK 358

Query: 356  DTMDDKDYVGNKRLELSGQLLALLFEDLFKTMNEEASRKMEVVLSRLSRSNRFDISQLI- 180
            D MDDKDYVGNKRLELSGQL++LLFEDLFKT   E  + +++VLS+ SRS+  D SQ + 
Sbjct: 359  DAMDDKDYVGNKRLELSGQLISLLFEDLFKTTISEVQKMIDLVLSKPSRSSALDPSQFLR 418

Query: 179  GGESITNGLERTLSTGNFDIKRFKMHRKGMTQAVARLSYIATLGFMTKISPQFEKSRKV 3
              E+IT GLERTLSTGNFDIKRFKMHRKGMTQ +ARLS+I TLG+MTK+SPQFEKSRKV
Sbjct: 419  SRETITFGLERTLSTGNFDIKRFKMHRKGMTQVLARLSFIGTLGYMTKVSPQFEKSRKV 477