BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Mentha28_contig00028229
         (1726 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|EYU22643.1| hypothetical protein MIMGU_mgv1a002284mg [Mimulus...   780   0.0  
ref|XP_002272750.1| PREDICTED: multisubstrate pseudouridine synt...   704   0.0  
ref|XP_006347775.1| PREDICTED: multisubstrate pseudouridine synt...   697   0.0  
ref|XP_006382775.1| hypothetical protein POPTR_0005s05300g [Popu...   695   0.0  
emb|CBI34194.3| unnamed protein product [Vitis vinifera]              689   0.0  
ref|XP_004230110.1| PREDICTED: multisubstrate pseudouridine synt...   689   0.0  
gb|EXB39195.1| Multisubstrate pseudouridine synthase 7 [Morus no...   685   0.0  
ref|XP_002512230.1| tRNA pseudouridine synthase d, putative [Ric...   685   0.0  
ref|XP_007030612.1| Pseudouridine synthase family protein isofor...   684   0.0  
ref|XP_006471920.1| PREDICTED: multisubstrate pseudouridine synt...   674   0.0  
ref|XP_007208186.1| hypothetical protein PRUPE_ppa020985mg [Prun...   673   0.0  
ref|XP_004302031.1| PREDICTED: multisubstrate pseudouridine synt...   665   0.0  
ref|XP_004302030.1| PREDICTED: multisubstrate pseudouridine synt...   665   0.0  
ref|XP_006432989.1| hypothetical protein CICLE_v10003382mg [Citr...   664   0.0  
ref|XP_007030611.1| Pseudouridine synthase family protein, putat...   661   0.0  
ref|NP_187133.3| pseudouridine synthase [Arabidopsis thaliana] g...   661   0.0  
ref|XP_004142573.1| PREDICTED: putative pseudouridine synthase C...   652   0.0  
ref|XP_006408145.1| hypothetical protein EUTSA_v10022286mg, part...   645   0.0  
ref|XP_002884472.1| pseudouridylate synthase [Arabidopsis lyrata...   640   0.0  
ref|XP_006300094.1| hypothetical protein CARUB_v10016322mg [Caps...   634   e-179

>gb|EYU22643.1| hypothetical protein MIMGU_mgv1a002284mg [Mimulus guttatus]
          Length = 691

 Score =  780 bits (2013), Expect = 0.0
 Identities = 391/537 (72%), Positives = 447/537 (83%), Gaps = 2/537 (0%)
 Frame = +1

Query: 82   MTSVEESDVGILCYISKLPGFRGILKQRYSDFIVNEVGLDGNVVHLTSLDCP-SEIAEEK 258
            MTS EESDVGILCYIS LPGFRGILKQRYSDFIVNEV +DGNVVHLTSL+ P SE A EK
Sbjct: 1    MTSAEESDVGILCYISPLPGFRGILKQRYSDFIVNEVDMDGNVVHLTSLEAPPSEAAGEK 60

Query: 259  KEKTDDLVDRDFSQEIESFRVLAGDADVEKLKKLIDQVVSGVHNNGESVVLSPSSDKSHR 438
            KEK  D +++D++ EIESFR L GD+D EKLK  IDQ+ SGV  N ES+VLSPSSDK+HR
Sbjct: 61   KEKVADQLEKDYASEIESFRTLVGDSDAEKLKFFIDQISSGVKTNDESIVLSPSSDKTHR 120

Query: 439  TAIHNFFKERMKFLVTDTLDGPDSSSKCIRVRLXXXXXXXXXXXXXXXXXXXXXP-YDSR 615
            TA+HNFFKER+KFLVTDT+DGPDSSSKCIRVRL                       YDSR
Sbjct: 121  TAVHNFFKERLKFLVTDTVDGPDSSSKCIRVRLNSGINNNARGNNSRKRKDRGQQQYDSR 180

Query: 616  GSDNWPENIGKFLRFHLYKENKDTQEXXXXXXXXXXXXPRSFGFAGTKDKRSVSTQRVTV 795
            G+D+WP+N GKFLRF+LYKENKDTQE            PRSFGFAGTKDKRSVSTQRVTV
Sbjct: 181  GTDSWPDNTGKFLRFYLYKENKDTQEALGILGKMIGVQPRSFGFAGTKDKRSVSTQRVTV 240

Query: 796  FKQRASRLAALNQKLIGIKVGNFCHVNEGLVLGQLQGNRFTITLRSIIAENEDIIKAAAT 975
            FKQRAS+LAALN +L GIKVGNFC+V+E LVLG+LQGNRFTITLRS+ ++ EDII+A+AT
Sbjct: 241  FKQRASKLAALNDRLFGIKVGNFCYVDEELVLGKLQGNRFTITLRSVSSDVEDIIRASAT 300

Query: 976  ALGKNGFINYFGLQRFGSSSIPTHLIGAALLQGEWQAAVNMVLEPREGEKDATRKIREYY 1155
            ALG NGFINYFGLQRFGSSSIPTHLIGAALL+GEW+AAV+M+L+PREGEKD TR IREYY
Sbjct: 301  ALGNNGFINYFGLQRFGSSSIPTHLIGAALLRGEWKAAVSMILDPREGEKDVTRTIREYY 360

Query: 1156 KESGDIEGTIRQLPRHLVAERAILQCFRQCPGNYLQALLAIPRTLRMMYVHSYQSYLWNH 1335
            KESGDIEGT+RQLPRHLVAER+IL CF++ PGNYLQALLAIPRTLRMM+VHSYQSYLWNH
Sbjct: 361  KESGDIEGTLRQLPRHLVAERSILYCFQKNPGNYLQALLAIPRTLRMMFVHSYQSYLWNH 420

Query: 1336 AASMRVQNYGFHQVVLGDLVFCNKEESEKELITSVLECGDDEGDDTHIDCDLEDVPVTDL 1515
            AASMRVQ YG HQVVLGDLV+C  +E EKE   S  EC D  G+DTH DC ++++ V DL
Sbjct: 421  AASMRVQKYGMHQVVLGDLVYCKDQEIEKETKFSNSECEDGNGNDTHDDCHVDELSVIDL 480

Query: 1516 SEVQNASVKVISKEDIAAGKYTIEDIILPLPGSRVSYPSNEIGKIYHDLAKKVHDSM 1686
            SE +N  VKVIS+EDIAAG YTI+DI+LPLPGSR++YP N+IGKIYHD+A+K + S+
Sbjct: 481  SEARNTVVKVISEEDIAAGTYTIDDIVLPLPGSRITYPLNDIGKIYHDIARKDNISL 537


>ref|XP_002272750.1| PREDICTED: multisubstrate pseudouridine synthase 7-like [Vitis
            vinifera]
          Length = 694

 Score =  704 bits (1817), Expect = 0.0
 Identities = 351/530 (66%), Positives = 408/530 (76%)
 Frame = +1

Query: 82   MTSVEESDVGILCYISKLPGFRGILKQRYSDFIVNEVGLDGNVVHLTSLDCPSEIAEEKK 261
            M  +EESDVGI  YIS+LPGFRGILKQRY DFIVNEV  DGNVVHLTSLD P E  E+ +
Sbjct: 1    MKHLEESDVGISFYISQLPGFRGILKQRYCDFIVNEVDSDGNVVHLTSLDAPPESMEKNE 60

Query: 262  EKTDDLVDRDFSQEIESFRVLAGDADVEKLKKLIDQVVSGVHNNGESVVLSPSSDKSHRT 441
             K  D  ++ ++ EIE FR L GD+DVE LK LIDQV SG+ +    +VLS SSDKSHRT
Sbjct: 61   TKISDQSNKGYASEIELFRSLVGDSDVECLKGLIDQVASGIEDGVSPIVLSSSSDKSHRT 120

Query: 442  AIHNFFKERMKFLVTDTLDGPDSSSKCIRVRLXXXXXXXXXXXXXXXXXXXXXPYDSRGS 621
            A+HNFFKE +KFLVTDT+DGPD+SSKCIRVRL                     P+DSRGS
Sbjct: 121  AVHNFFKENLKFLVTDTIDGPDTSSKCIRVRLNSGGSHNNGRNSRKRKDRRDKPFDSRGS 180

Query: 622  DNWPENIGKFLRFHLYKENKDTQEXXXXXXXXXXXXPRSFGFAGTKDKRSVSTQRVTVFK 801
            DNW E++GKFLRFHLYKENKDTQE            PRSFGFAGTKDKRSVSTQRVTVFK
Sbjct: 181  DNWSEHVGKFLRFHLYKENKDTQEAIGLIGKMLGIQPRSFGFAGTKDKRSVSTQRVTVFK 240

Query: 802  QRASRLAALNQKLIGIKVGNFCHVNEGLVLGQLQGNRFTITLRSIIAENEDIIKAAATAL 981
            Q A+RLAALN++LIGIKVG+FCHV EGLVLGQL GNRFTITLR ++A++E+ IKA+A AL
Sbjct: 241  QHANRLAALNERLIGIKVGDFCHVREGLVLGQLLGNRFTITLRGVVADSEETIKASADAL 300

Query: 982  GKNGFINYFGLQRFGSSSIPTHLIGAALLQGEWQAAVNMVLEPREGEKDATRKIREYYKE 1161
            G+ GFINYFGLQRFGS S+PTHLIGAALL+GEW+ AV+++L+PREGE+DA RK REYYKE
Sbjct: 301  GRLGFINYFGLQRFGSGSVPTHLIGAALLRGEWETAVSLILDPREGERDAIRKAREYYKE 360

Query: 1162 SGDIEGTIRQLPRHLVAERAILQCFRQCPGNYLQALLAIPRTLRMMYVHSYQSYLWNHAA 1341
            S DIEGT+RQ PRHLVAERAILQC ++ PGNYLQAL AIPRTLRMMYVHSYQSYLWNHAA
Sbjct: 361  SDDIEGTLRQFPRHLVAERAILQCLKKYPGNYLQALKAIPRTLRMMYVHSYQSYLWNHAA 420

Query: 1342 SMRVQNYGFHQVVLGDLVFCNKEESEKELITSVLECGDDEGDDTHIDCDLEDVPVTDLSE 1521
            SMRVQNYG  QVVLGDLV+C  + +EK       E  DD   D       +++  TDL E
Sbjct: 421  SMRVQNYGTKQVVLGDLVYCKGDNAEKVTRVVNSEFDDDGCSDAFDSSHFDEISETDLPE 480

Query: 1522 VQNASVKVISKEDIAAGKYTIEDIILPLPGSRVSYPSNEIGKIYHDLAKK 1671
             +N  VK +  ED+  G YTI+D++LPLPGSR  YP+N+I ++YHD AKK
Sbjct: 481  ERNDPVKALDAEDLLTGNYTIDDVVLPLPGSRAIYPTNDIAQVYHDFAKK 530


>ref|XP_006347775.1| PREDICTED: multisubstrate pseudouridine synthase 7-like [Solanum
            tuberosum]
          Length = 685

 Score =  697 bits (1798), Expect = 0.0
 Identities = 350/530 (66%), Positives = 421/530 (79%)
 Frame = +1

Query: 82   MTSVEESDVGILCYISKLPGFRGILKQRYSDFIVNEVGLDGNVVHLTSLDCPSEIAEEKK 261
            M +++ESDVGI CYIS LPGFRGILKQRYSDFIVNEV LD NVVHLT L+ P E +E K 
Sbjct: 1    MKTMDESDVGISCYISNLPGFRGILKQRYSDFIVNEVDLDENVVHLTLLEAPKECSENKD 60

Query: 262  EKTDDLVDRDFSQEIESFRVLAGDADVEKLKKLIDQVVSGVHNNGESVVLSPSSDKSHRT 441
                D ++R +  EIESFR LAG++D +KLK  ID++ SG   + ES+VLSPSSDKSHRT
Sbjct: 61   VNISDQLNRSYVTEIESFRSLAGNSDADKLKAFIDELNSGADVSDESIVLSPSSDKSHRT 120

Query: 442  AIHNFFKERMKFLVTDTLDGPDSSSKCIRVRLXXXXXXXXXXXXXXXXXXXXXPYDSRGS 621
            AIHNFFKER+KFLVTDT+DG +  SKC+RVRL                      YDSRGS
Sbjct: 121  AIHNFFKERLKFLVTDTIDGVEDQSKCVRVRLNNDRNNGRGRSSRKRKDRDDKRYDSRGS 180

Query: 622  DNWPENIGKFLRFHLYKENKDTQEXXXXXXXXXXXXPRSFGFAGTKDKRSVSTQRVTVFK 801
            D+WP ++GKFLRFHL+KENKDTQE             RSFGFAGTKDKR+VSTQRVTVFK
Sbjct: 181  DSWPGHLGKFLRFHLFKENKDTQEALNVIAKMLGVQLRSFGFAGTKDKRAVSTQRVTVFK 240

Query: 802  QRASRLAALNQKLIGIKVGNFCHVNEGLVLGQLQGNRFTITLRSIIAENEDIIKAAATAL 981
            Q+AS+LAALN++LIGIKVG+FCHV EGL+LGQL GNRFTITLR + AE+EDIIKA+A AL
Sbjct: 241  QQASKLAALNKRLIGIKVGDFCHVKEGLLLGQLYGNRFTITLRGVSAESEDIIKASAVAL 300

Query: 982  GKNGFINYFGLQRFGSSSIPTHLIGAALLQGEWQAAVNMVLEPREGEKDATRKIREYYKE 1161
            GK+GFINYFGLQRFGSSS+PTHLIGAALL+GEW+AAV+++L+PREGEK+A   +REYYKE
Sbjct: 301  GKHGFINYFGLQRFGSSSVPTHLIGAALLRGEWKAAVSLILDPREGEKNAISTVREYYKE 360

Query: 1162 SGDIEGTIRQLPRHLVAERAILQCFRQCPGNYLQALLAIPRTLRMMYVHSYQSYLWNHAA 1341
            SGDI+GT+RQLPR+LVAE+AILQC ++ PGNYLQAL AIPRTLRMMYVHSYQSYLWNHAA
Sbjct: 361  SGDIDGTLRQLPRYLVAEKAILQCLKRSPGNYLQALKAIPRTLRMMYVHSYQSYLWNHAA 420

Query: 1342 SMRVQNYGFHQVVLGDLVFCNKEESEKELITSVLECGDDEGDDTHIDCDLEDVPVTDLSE 1521
            SMRVQ +GF QVVLGDLV+  +E   KE  + V EC D   ++     +L+++  TDL E
Sbjct: 421  SMRVQKHGFDQVVLGDLVYSKEEYKVKE--SFVAECEDVNDNNMDDYSNLDEISETDLPE 478

Query: 1522 VQNASVKVISKEDIAAGKYTIEDIILPLPGSRVSYPSNEIGKIYHDLAKK 1671
             +N  VKVI++ED+ +G Y I+D++LPLPGSRV YPSN+IG++Y DLA+K
Sbjct: 479  ERNIPVKVINEEDLKSGTYAIDDVLLPLPGSRVIYPSNDIGEVYCDLAQK 528


>ref|XP_006382775.1| hypothetical protein POPTR_0005s05300g [Populus trichocarpa]
            gi|550338143|gb|ERP60572.1| hypothetical protein
            POPTR_0005s05300g [Populus trichocarpa]
          Length = 752

 Score =  695 bits (1793), Expect = 0.0
 Identities = 354/565 (62%), Positives = 427/565 (75%), Gaps = 16/565 (2%)
 Frame = +1

Query: 25   VKPFKLQSPLLL*NPC---LASMTSVEESDVGILCYISKLPGFRGILKQRYSDFIVNEVG 195
            +KP+K Q   L  +     + S  S+EESDVGILCYIS+LPGFRGILKQRY+DFIVNEV 
Sbjct: 30   LKPYKGQPTRLATSRVPVPVPSTASMEESDVGILCYISQLPGFRGILKQRYADFIVNEVD 89

Query: 196  LDGNVVHLTSLDCPSEIAEEKKEKTDDLVDRDFSQ------EIESFRVLAGDADVEKLKK 357
             DGNVVHLT L+ P ++ EE KE    + D   S+      EIE FR LAGD+D EKL+ 
Sbjct: 90   TDGNVVHLTCLEPPPQMVEETKECGAKVSDEKMSESKSYEAEIELFRSLAGDSDAEKLES 149

Query: 358  LIDQVVS--GVHNNGESVVLSPSSDKSHRTAIHNFFKERMKFLVTDTLDGPDSSSKCIRV 531
            LI QV S  G  ++   +VLSP SDK+HRTA+HNFFK+  KFLVTDT DGPD+SSKCIRV
Sbjct: 150  LISQVDSCTGSEDSVPHIVLSPDSDKTHRTAVHNFFKQNFKFLVTDTTDGPDASSKCIRV 209

Query: 532  RLXXXXXXXXXXXXXXXXXXXXXPYDSRGSDNWPENIGKFLRFHLYKENKDTQEXXXXXX 711
            RL                     P+DSRGS NWPE++GKFLRFHLYKENKDTQE      
Sbjct: 210  RLDSGGHKNNGRNSKKRKERGEKPFDSRGSSNWPEHLGKFLRFHLYKENKDTQEALGIIG 269

Query: 712  XXXXXXPRSFGFAGTKDKRSVSTQRVTVFKQRASRLAALNQKLIGIKVGNFCHVNEGLVL 891
                   +SFGFAGTKDKR+VSTQRVTVFKQ+ASRLAALN +LIGIKVG+FCHV EGL+L
Sbjct: 270  KMLGIQSKSFGFAGTKDKRAVSTQRVTVFKQQASRLAALNDRLIGIKVGDFCHVKEGLLL 329

Query: 892  GQLQGNRFTITLRSIIAENEDIIKAAATALGKNGFINYFGLQRFGSSSIPTHLIGAALLQ 1071
            G+L GNRFT+TLR +IA++ED IKAAA +LG++GFINYFGLQRFG+ S+PTHLIGAALL+
Sbjct: 330  GRLLGNRFTVTLRGVIADSEDTIKAAADSLGRHGFINYFGLQRFGTGSVPTHLIGAALLR 389

Query: 1072 GEWQAAVNMVLEPREGE-----KDATRKIREYYKESGDIEGTIRQLPRHLVAERAILQCF 1236
            GEW+ AV+M+L+PREG+         RK REYYKES DIEGT+RQLPRHLVAERA+LQC 
Sbjct: 390  GEWKTAVSMILDPREGDILLLFPYVIRKAREYYKESNDIEGTLRQLPRHLVAERAVLQCL 449

Query: 1237 RQCPGNYLQALLAIPRTLRMMYVHSYQSYLWNHAASMRVQNYGFHQVVLGDLVFCNKEES 1416
            ++CPG+YLQA+ AIPRTLRMMYVH YQSYLWNHAAS RVQ YGF QV+LGDLV+C  ++S
Sbjct: 450  KKCPGDYLQAMKAIPRTLRMMYVHGYQSYLWNHAASERVQKYGFDQVLLGDLVYCKGDDS 509

Query: 1417 EKELITSVLECGDDEGDDTHIDCDLEDVPVTDLSEVQNASVKVISKEDIAAGKYTIEDII 1596
            EKE +    EC DD  DDT+    L++   TDL E +N  VKV++ ED++ G YT++D++
Sbjct: 510  EKETVGVNSECNDDNCDDTYDCSHLDETSGTDLLERKNTLVKVVTVEDMSTGNYTVDDVV 569

Query: 1597 LPLPGSRVSYPSNEIGKIYHDLAKK 1671
            LP+PGSRV +P+NEI K+YHDLAKK
Sbjct: 570  LPMPGSRVIFPTNEIAKVYHDLAKK 594


>emb|CBI34194.3| unnamed protein product [Vitis vinifera]
          Length = 693

 Score =  689 bits (1779), Expect = 0.0
 Identities = 347/530 (65%), Positives = 404/530 (76%)
 Frame = +1

Query: 82   MTSVEESDVGILCYISKLPGFRGILKQRYSDFIVNEVGLDGNVVHLTSLDCPSEIAEEKK 261
            M  +EESDVGI  YIS+LPGFRGILKQRY DFIVNEV  DGNVVHLTSLD P E  E+ +
Sbjct: 1    MKHLEESDVGISFYISQLPGFRGILKQRYCDFIVNEVDSDGNVVHLTSLDAPPESMEKNE 60

Query: 262  EKTDDLVDRDFSQEIESFRVLAGDADVEKLKKLIDQVVSGVHNNGESVVLSPSSDKSHRT 441
             K  D  ++ ++ EIE FR L GD+DVE LK LIDQV SG+ +    +VLS SSDKSHRT
Sbjct: 61   TKISDQSNKGYASEIELFRSLVGDSDVECLKGLIDQVASGIEDGVSPIVLSSSSDKSHRT 120

Query: 442  AIHNFFKERMKFLVTDTLDGPDSSSKCIRVRLXXXXXXXXXXXXXXXXXXXXXPYDSRGS 621
            A+HNFFKE +KFLVTDT+DGPD+SSKCIRVRL                     P+DSRGS
Sbjct: 121  AVHNFFKENLKFLVTDTIDGPDTSSKCIRVRLNSGGSHNNGRNSRKRKDRRDKPFDSRGS 180

Query: 622  DNWPENIGKFLRFHLYKENKDTQEXXXXXXXXXXXXPRSFGFAGTKDKRSVSTQRVTVFK 801
            DNW E++GKFLRFHLYKENKDTQE            PRSFGFAGTKDKRSVSTQRVTVFK
Sbjct: 181  DNWSEHVGKFLRFHLYKENKDTQEAIGLIGKMLGIQPRSFGFAGTKDKRSVSTQRVTVFK 240

Query: 802  QRASRLAALNQKLIGIKVGNFCHVNEGLVLGQLQGNRFTITLRSIIAENEDIIKAAATAL 981
            Q A+RLAALN++LIGIKVG+FCHV EGLVLGQL GNRFTITLR ++A++E+ IKA+A AL
Sbjct: 241  QHANRLAALNERLIGIKVGDFCHVREGLVLGQLLGNRFTITLRGVVADSEETIKASADAL 300

Query: 982  GKNGFINYFGLQRFGSSSIPTHLIGAALLQGEWQAAVNMVLEPREGEKDATRKIREYYKE 1161
            G+ GFINYFGLQRFGS S+PTHLIGAALL+GEW+ AV+++L+PREG+     K REYYKE
Sbjct: 301  GRLGFINYFGLQRFGSGSVPTHLIGAALLRGEWETAVSLILDPREGD-ILLLKAREYYKE 359

Query: 1162 SGDIEGTIRQLPRHLVAERAILQCFRQCPGNYLQALLAIPRTLRMMYVHSYQSYLWNHAA 1341
            S DIEGT+RQ PRHLVAERAILQC ++ PGNYLQAL AIPRTLRMMYVHSYQSYLWNHAA
Sbjct: 360  SDDIEGTLRQFPRHLVAERAILQCLKKYPGNYLQALKAIPRTLRMMYVHSYQSYLWNHAA 419

Query: 1342 SMRVQNYGFHQVVLGDLVFCNKEESEKELITSVLECGDDEGDDTHIDCDLEDVPVTDLSE 1521
            SMRVQNYG  QVVLGDLV+C  + +EK       E  DD   D       +++  TDL E
Sbjct: 420  SMRVQNYGTKQVVLGDLVYCKGDNAEKVTRVVNSEFDDDGCSDAFDSSHFDEISETDLPE 479

Query: 1522 VQNASVKVISKEDIAAGKYTIEDIILPLPGSRVSYPSNEIGKIYHDLAKK 1671
             +N  VK +  ED+  G YTI+D++LPLPGSR  YP+N+I ++YHD AKK
Sbjct: 480  ERNDPVKALDAEDLLTGNYTIDDVVLPLPGSRAIYPTNDIAQVYHDFAKK 529


>ref|XP_004230110.1| PREDICTED: multisubstrate pseudouridine synthase 7-like [Solanum
            lycopersicum]
          Length = 685

 Score =  689 bits (1777), Expect = 0.0
 Identities = 346/530 (65%), Positives = 418/530 (78%)
 Frame = +1

Query: 82   MTSVEESDVGILCYISKLPGFRGILKQRYSDFIVNEVGLDGNVVHLTSLDCPSEIAEEKK 261
            M +++ESDVGI CYIS LPGFRGILKQRYSDFIVNEV LD NVVHL SL+ P E +E K 
Sbjct: 1    MKTMDESDVGISCYISNLPGFRGILKQRYSDFIVNEVDLDENVVHLNSLEAPKECSENKD 60

Query: 262  EKTDDLVDRDFSQEIESFRVLAGDADVEKLKKLIDQVVSGVHNNGESVVLSPSSDKSHRT 441
                D ++R +  EIESFR LAG++D +KLK  ID++ SG   + ES+VLSPSSDKSHRT
Sbjct: 61   VNISDQLNRSYVTEIESFRSLAGNSDADKLKAFIDELNSGADVSDESIVLSPSSDKSHRT 120

Query: 442  AIHNFFKERMKFLVTDTLDGPDSSSKCIRVRLXXXXXXXXXXXXXXXXXXXXXPYDSRGS 621
             IHNFFKER+KFLVTDT+DG +  SKC+RVRL                      YDSRGS
Sbjct: 121  EIHNFFKERLKFLVTDTIDGVEDQSKCVRVRLNNDRNNGRGRYSRKRKDRNDKRYDSRGS 180

Query: 622  DNWPENIGKFLRFHLYKENKDTQEXXXXXXXXXXXXPRSFGFAGTKDKRSVSTQRVTVFK 801
            D+WP ++GKFLRFHL+KENKDTQE             RSFGFAGTKDKR+VSTQRVTVFK
Sbjct: 181  DSWPGHLGKFLRFHLFKENKDTQEALNVIAKMLGVQLRSFGFAGTKDKRAVSTQRVTVFK 240

Query: 802  QRASRLAALNQKLIGIKVGNFCHVNEGLVLGQLQGNRFTITLRSIIAENEDIIKAAATAL 981
            Q+AS+LAALN++LIGIKVG+FCHV EGL+LGQL GNRFTITLR + AE+EDIIKA+A AL
Sbjct: 241  QQASKLAALNKRLIGIKVGDFCHVKEGLLLGQLYGNRFTITLRGVSAESEDIIKASAVAL 300

Query: 982  GKNGFINYFGLQRFGSSSIPTHLIGAALLQGEWQAAVNMVLEPREGEKDATRKIREYYKE 1161
            GK+GFINYFGLQRFGSSS+PTHLIGAALL+GEW+AAV+++L+PREGEK+    +REYYKE
Sbjct: 301  GKHGFINYFGLQRFGSSSVPTHLIGAALLRGEWKAAVSLILDPREGEKNTISTVREYYKE 360

Query: 1162 SGDIEGTIRQLPRHLVAERAILQCFRQCPGNYLQALLAIPRTLRMMYVHSYQSYLWNHAA 1341
            SGDI+GT+RQLPR+LVAE+AILQ  ++ PGNYLQAL AIPRTLRMMYVHSYQSYLWNHAA
Sbjct: 361  SGDIDGTLRQLPRYLVAEKAILQSLKRSPGNYLQALKAIPRTLRMMYVHSYQSYLWNHAA 420

Query: 1342 SMRVQNYGFHQVVLGDLVFCNKEESEKELITSVLECGDDEGDDTHIDCDLEDVPVTDLSE 1521
            SMRVQ +GF QVVLGDLV+  ++   KE  + V EC D   ++     +L+++  TDL E
Sbjct: 421  SMRVQKHGFDQVVLGDLVYSKEDYKVKE--SFVAECEDVNDNNMDDYSNLDEISETDLPE 478

Query: 1522 VQNASVKVISKEDIAAGKYTIEDIILPLPGSRVSYPSNEIGKIYHDLAKK 1671
             +N  VKVI++ED+ +G YTI+D++LPL GSRV YPSN+IG++Y DLA+K
Sbjct: 479  ERNIPVKVINEEDLKSGTYTIDDVLLPLSGSRVIYPSNDIGEVYRDLAQK 528


>gb|EXB39195.1| Multisubstrate pseudouridine synthase 7 [Morus notabilis]
          Length = 784

 Score =  685 bits (1768), Expect = 0.0
 Identities = 340/533 (63%), Positives = 410/533 (76%), Gaps = 2/533 (0%)
 Frame = +1

Query: 79   SMTSVEESDVGILCYISKLPGFRGILKQRYSDFIVNEVGLDGNVVHLTSLDCPSEIAEEK 258
            +M +++ESDVGI CYIS LPGFRGILKQRYSDFIVNEV  DGNVVHLTSLD P E  EE 
Sbjct: 59   AMKTLDESDVGIFCYISNLPGFRGILKQRYSDFIVNEVDTDGNVVHLTSLDAPPETREET 118

Query: 259  KEKTDDLVDRDFSQEIESFRVLAGDADVEKLKKLIDQVVSGVHNNGESVVLSPSSDKSHR 438
            + +T D   + ++ EIESFR LAGD+D E L+ LI+Q+ SG       +VLSPSSDKSHR
Sbjct: 119  RTETIDAGTKSYTSEIESFRCLAGDSDAESLEALINQINSGGGEEVSPIVLSPSSDKSHR 178

Query: 439  TAIHNFFKERMKFLVTDTLDGPDSSSKCIRVRLXXXXXXXXXXXXXXXXXXXXXPYDSRG 618
            T IHNFFK+  KFLVTDT+DGPD+SSKCIRVRL                     P+D RG
Sbjct: 179  TEIHNFFKKNFKFLVTDTVDGPDASSKCIRVRLNSGRHNNHGRNSKKRKERGDKPFDRRG 238

Query: 619  SDNWPENIGKFLRFHLYKENKDTQEXXXXXXXXXXXXPRSFGFAGTKDKRSVSTQRVTVF 798
            SD+WPE++GKFLRFHLYKENKD+QE            PRSFGFAGTKDKRSVSTQRVTVF
Sbjct: 239  SDDWPEHVGKFLRFHLYKENKDSQEALGLIGKMLGIQPRSFGFAGTKDKRSVSTQRVTVF 298

Query: 799  KQRASRLAALNQKLIGIKVGNFCHVNEGLVLGQLQGNRFTITLRSIIAENEDIIKAAATA 978
            KQRASRLAALN +LIGI+VG+FC+V E LVLGQL GNRFT+TLR ++A++E+ IKA+A+A
Sbjct: 299  KQRASRLAALNDRLIGIQVGDFCYVKEELVLGQLSGNRFTVTLRGVVADSEETIKASASA 358

Query: 979  LGKNGFINYFGLQRFGSSSIPTHLIGAALLQGEWQAAVNMVLEPREGE--KDATRKIREY 1152
            LG+ GFINYFGLQRFGS S+PT+LIGA L +GEW+ AV+M+L+PREG+   D   K REY
Sbjct: 359  LGRRGFINYFGLQRFGSGSVPTYLIGAMLFRGEWKDAVHMILDPREGDILLDVITKAREY 418

Query: 1153 YKESGDIEGTIRQLPRHLVAERAILQCFRQCPGNYLQALLAIPRTLRMMYVHSYQSYLWN 1332
            YKE+ DI+GT+RQLPRHLVAE AILQC ++CPGNYLQAL AIPRTLRMMYVHSYQSYLWN
Sbjct: 419  YKETNDIDGTLRQLPRHLVAENAILQCLKKCPGNYLQALKAIPRTLRMMYVHSYQSYLWN 478

Query: 1333 HAASMRVQNYGFHQVVLGDLVFCNKEESEKELITSVLECGDDEGDDTHIDCDLEDVPVTD 1512
            HAAS RVQ YG  QVV+GDLVFC +   EK   T+  +C D++ +      D+++V   +
Sbjct: 479  HAASTRVQKYGTDQVVVGDLVFCKEHNIEKVKGTASADCKDEDSNAIFGSHDIDEVSGAE 538

Query: 1513 LSEVQNASVKVISKEDIAAGKYTIEDIILPLPGSRVSYPSNEIGKIYHDLAKK 1671
            L E +N  VKV++ EDI AG + I+D++LPLPGSRV  P+N+I ++YHDLAKK
Sbjct: 539  LPEERNNPVKVVAAEDILAGNFAIDDVVLPLPGSRVILPTNDIAQVYHDLAKK 591


>ref|XP_002512230.1| tRNA pseudouridine synthase d, putative [Ricinus communis]
            gi|223548191|gb|EEF49682.1| tRNA pseudouridine synthase
            d, putative [Ricinus communis]
          Length = 753

 Score =  685 bits (1767), Expect = 0.0
 Identities = 347/545 (63%), Positives = 429/545 (78%), Gaps = 15/545 (2%)
 Frame = +1

Query: 82   MTSVEESDVGILCYISKLPGFRGILKQRYSDFIVNEVGLDGNVVHLTSLDCPSEI---AE 252
            MT++EESDVGI CYISK+PGFRGILKQRYSDFIVNEV  +GNVVHLTSL  P EI   AE
Sbjct: 49   MTTIEESDVGISCYISKVPGFRGILKQRYSDFIVNEVDNNGNVVHLTSLHVPREIVEVAE 108

Query: 253  EKKEKTDDLVDRDFSQEIESFRVLAGDADVEKLKKLIDQVVSGVHN-NGESVVLSPSSDK 429
            E++E+  + V ++++ EIESFR LAGDAD ++L+  I+QV+S  +  N   ++LSP SDK
Sbjct: 109  EREEEITNQVGKNYAAEIESFRELAGDADTQRLEAFINQVISEDNCINISPILLSPDSDK 168

Query: 430  SHRTAIHNFFKERMKFLVTDTLDGPDSSSKCIRVRLXXXXXXXXXXXXXXXXXXXXX-PY 606
            +HRTA HNFFKE++KFLVTDT+DGPD+SSKCIRVRL                      P+
Sbjct: 169  AHRTATHNFFKEKLKFLVTDTVDGPDASSKCIRVRLNSRGNINEGNRNSKKRKDRNDKPF 228

Query: 607  DSRGSDNWPENIGKFLRFHLYKENKDTQEXXXXXXXXXXXXPRSFGFAGTKDKRSVSTQR 786
            DSRGSD+WPE++GKFLRFHLYKENKDTQE            PRSFGFAGTKDKRSVSTQR
Sbjct: 229  DSRGSDHWPEHLGKFLRFHLYKENKDTQEAIGLIGKMLGIQPRSFGFAGTKDKRSVSTQR 288

Query: 787  VTVFKQRASRLAALNQKLIGIKVGNFCHVNEGLVLGQLQGNRFTITLRSIIAENEDIIKA 966
            VTVFKQ ASRLAALN +LIGIKVG+FC+VNEGL+LGQL GNRFT+TLR ++A++ED IK 
Sbjct: 289  VTVFKQHASRLAALNDRLIGIKVGDFCYVNEGLLLGQLLGNRFTVTLRGVVADSEDTIKG 348

Query: 967  AATALGKNGFINYFGLQRFGSSSIPTHLIGAALLQGEWQAAVNMVLEPREGEKDA----- 1131
            +A +LG++GFINYFGLQRFGS S+PTHLIGAALL+GEW+ AV+M+L+PREG+        
Sbjct: 349  SADSLGRHGFINYFGLQRFGSGSVPTHLIGAALLRGEWKYAVSMILDPREGDILLLVICF 408

Query: 1132 --TRKIREYYKESGDIEGTIRQLPRHLVAERAILQCFRQCPGNYLQALLAIPRTLRMMYV 1305
               R  REYYKES DI+GT+RQLPR+L AERA+LQC ++CPGNYLQAL AIPRTLRMMYV
Sbjct: 409  MWMRMAREYYKESDDIDGTLRQLPRYLTAERAVLQCLKKCPGNYLQALKAIPRTLRMMYV 468

Query: 1306 HSYQSYLWNHAASMRVQNYGFHQVVLGDLVFCNKEESEKELITSVLECGDDEGDDTHIDC 1485
            HSYQSYLWNHAASMRVQ YG  QVV+GDLV+C  +++E+E+ ++   C DD+ +D +   
Sbjct: 469  HSYQSYLWNHAASMRVQKYGTDQVVVGDLVYCKGDDTEREIGSANSACEDDDCEDMYGCS 528

Query: 1486 DLEDVPVTDLSEVQNASVKV---ISKEDIAAGKYTIEDIILPLPGSRVSYPSNEIGKIYH 1656
            +L++   TDLSE ++  VKV   ++ ED++ G YTI D+ILP+PGSRVSYP+N+I K+YH
Sbjct: 529  NLDETSGTDLSERKDTLVKVEQAVNAEDLSTGNYTINDVILPMPGSRVSYPTNDIAKVYH 588

Query: 1657 DLAKK 1671
            DLA+K
Sbjct: 589  DLAEK 593


>ref|XP_007030612.1| Pseudouridine synthase family protein isoform 2 [Theobroma cacao]
            gi|508719217|gb|EOY11114.1| Pseudouridine synthase family
            protein isoform 2 [Theobroma cacao]
          Length = 732

 Score =  684 bits (1766), Expect = 0.0
 Identities = 340/543 (62%), Positives = 417/543 (76%)
 Frame = +1

Query: 43   QSPLLL*NPCLASMTSVEESDVGILCYISKLPGFRGILKQRYSDFIVNEVGLDGNVVHLT 222
            ++P++  +  L  MT++ ESDVGILC+IS LPGFRGILKQRYSDFIVNEV  +GNVVHLT
Sbjct: 30   KTPVIKSSNSLTLMTTITESDVGILCFISHLPGFRGILKQRYSDFIVNEVDTEGNVVHLT 89

Query: 223  SLDCPSEIAEEKKEKTDDLVDRDFSQEIESFRVLAGDADVEKLKKLIDQVVSGVHNNGES 402
            SLD P E  +E + KT D +++ ++ EI  FR LAGD D ++L+  I+Q+ SG   +   
Sbjct: 90   SLDAPPEAVQEGETKTPDQLNKCYASEIIKFRSLAGDTDADRLEAFINQITSGSEEDICP 149

Query: 403  VVLSPSSDKSHRTAIHNFFKERMKFLVTDTLDGPDSSSKCIRVRLXXXXXXXXXXXXXXX 582
            +VLSP SDKSHRTA+HNFFKE ++FLVTDT+DGPDSSSKCIRVRL               
Sbjct: 150  IVLSPDSDKSHRTAMHNFFKENLRFLVTDTVDGPDSSSKCIRVRLNSGNNNKGRNSKKRK 209

Query: 583  XXXXXXPYDSRGSDNWPENIGKFLRFHLYKENKDTQEXXXXXXXXXXXXPRSFGFAGTKD 762
                  PYDSRGS +WPE++GKFLRFHLYKENKDTQE            PRSFGFAGTKD
Sbjct: 210  ERGDK-PYDSRGSSHWPEHLGKFLRFHLYKENKDTQEALGLIGKMLGIQPRSFGFAGTKD 268

Query: 763  KRSVSTQRVTVFKQRASRLAALNQKLIGIKVGNFCHVNEGLVLGQLQGNRFTITLRSIIA 942
            KRSVSTQRVTVFKQ ASRLAALN++LIGIKVG+FC+V +  +LGQL GNRFTI LR I+A
Sbjct: 269  KRSVSTQRVTVFKQHASRLAALNERLIGIKVGDFCYVKDDFLLGQLLGNRFTIILRGIVA 328

Query: 943  ENEDIIKAAATALGKNGFINYFGLQRFGSSSIPTHLIGAALLQGEWQAAVNMVLEPREGE 1122
            ++E+ IKA+  +LG++GFINYFGLQRFGS SIPTH IGA LL+GEWQAA + +L+PREGE
Sbjct: 329  DSEETIKASVESLGRHGFINYFGLQRFGSGSIPTHRIGATLLRGEWQAAASTILDPREGE 388

Query: 1123 KDATRKIREYYKESGDIEGTIRQLPRHLVAERAILQCFRQCPGNYLQALLAIPRTLRMMY 1302
            +D   K REYYKE+GDIEGT+RQLPRHLVAERA+LQC ++CPGNYLQAL AIPRTLRMMY
Sbjct: 389  RDFVSKAREYYKETGDIEGTLRQLPRHLVAERAMLQCLKKCPGNYLQALKAIPRTLRMMY 448

Query: 1303 VHSYQSYLWNHAASMRVQNYGFHQVVLGDLVFCNKEESEKELITSVLECGDDEGDDTHID 1482
            VHSYQSYLWNHAASMRV+ YG ++VVLGDLV+C   ++EK  +    E  D+  +D +  
Sbjct: 449  VHSYQSYLWNHAASMRVEKYGSNEVVLGDLVYCKGNDAEKVKVVP-SEHEDNNFEDAYDC 507

Query: 1483 CDLEDVPVTDLSEVQNASVKVISKEDIAAGKYTIEDIILPLPGSRVSYPSNEIGKIYHDL 1662
              L+++  TDL E +N  VK I+  DI+ G YTIED++LP+PGSR+ YP N+I  +YHD+
Sbjct: 508  SQLDEISGTDLPEGKNNLVKAITAADISTGNYTIEDVVLPMPGSRIIYPVNDIANVYHDM 567

Query: 1663 AKK 1671
            AKK
Sbjct: 568  AKK 570


>ref|XP_006471920.1| PREDICTED: multisubstrate pseudouridine synthase 7-like isoform X1
            [Citrus sinensis]
          Length = 739

 Score =  674 bits (1738), Expect = 0.0
 Identities = 336/535 (62%), Positives = 414/535 (77%), Gaps = 4/535 (0%)
 Frame = +1

Query: 79   SMTSVEESDVGILCYISKLPGFRGILKQRYSDFIVNEVGLDGNVVHLTSLDCPSEIA--E 252
            +M +V+ESD GILC+IS LPGFRGILKQRY DFIVNEV  D  VVHLTSLD P E A  E
Sbjct: 44   TMKTVDESDAGILCFISNLPGFRGILKQRYCDFIVNEVDTDRKVVHLTSLDVPPEEAAVE 103

Query: 253  EKKEKTDDLVDRDFSQEIESFRVLAGDADVEKLKKLIDQVVSGVHNNG-ESVVLSPSSDK 429
              + K  D ++R ++ EIESFR LAGD+D + L+ LI+QV SG + +    +VLS +SDK
Sbjct: 104  HNETKASDQLNRSYASEIESFRSLAGDSDAQCLETLINQVTSGKNEDSIPPIVLSANSDK 163

Query: 430  SHRTAIHNFFKERMKFLVTDTLDGPDSSSKCIRVRLXXXXXXXXXXXXXXXXXXXXX-PY 606
            SHRTAIHNFFK+  KFLVTDT+DGPD+SSKCIRVRL                      P+
Sbjct: 164  SHRTAIHNFFKDNFKFLVTDTVDGPDASSKCIRVRLNSGGNNNSMGRNSKKRKERGDNPF 223

Query: 607  DSRGSDNWPENIGKFLRFHLYKENKDTQEXXXXXXXXXXXXPRSFGFAGTKDKRSVSTQR 786
            DSRGS+NWPE +GKFLRFHLYKENKDTQE            PRSFGFAGTKDKRSVSTQR
Sbjct: 224  DSRGSENWPEQLGKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQR 283

Query: 787  VTVFKQRASRLAALNQKLIGIKVGNFCHVNEGLVLGQLQGNRFTITLRSIIAENEDIIKA 966
            VTVFKQRAS+LAALN++LIGI++G+FC+V EGL+LGQL GNRFTITLR ++ ++ED+IKA
Sbjct: 284  VTVFKQRASKLAALNKRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDSEDVIKA 343

Query: 967  AATALGKNGFINYFGLQRFGSSSIPTHLIGAALLQGEWQAAVNMVLEPREGEKDATRKIR 1146
            +A +LG+NGFINYFGLQRFGS S+PTHL+GA LL+GEW++AV M+L+PREGE++   K R
Sbjct: 344  SANSLGRNGFINYFGLQRFGSGSVPTHLVGATLLRGEWKSAVKMILDPREGERNEISKAR 403

Query: 1147 EYYKESGDIEGTIRQLPRHLVAERAILQCFRQCPGNYLQALLAIPRTLRMMYVHSYQSYL 1326
            EYYKE+ DI+GT+R+LPRHLVAERAILQC ++CPGNYLQAL AIPRTLRMMYVHSYQS+L
Sbjct: 404  EYYKETDDIDGTLRKLPRHLVAERAILQCLKKCPGNYLQALKAIPRTLRMMYVHSYQSFL 463

Query: 1327 WNHAASMRVQNYGFHQVVLGDLVFCNKEESEKELITSVLECGDDEGDDTHIDCDLEDVPV 1506
            WNHAAS RVQ +G   VV+GDLVFC  +++EKEL     E   +  +D      L++VP 
Sbjct: 464  WNHAASARVQKHGTEHVVVGDLVFCKGDDTEKELGCVNPEFEYESSNDADDSSHLDEVPE 523

Query: 1507 TDLSEVQNASVKVISKEDIAAGKYTIEDIILPLPGSRVSYPSNEIGKIYHDLAKK 1671
            TD  + ++  VK ++ EDI +GKYTI+D++LPLPGSRV YP N++ ++YH LA+K
Sbjct: 524  TDHPDGRHNLVKTVTAEDINSGKYTIDDVVLPLPGSRVIYPMNDVAEVYHHLAEK 578


>ref|XP_007208186.1| hypothetical protein PRUPE_ppa020985mg [Prunus persica]
            gi|462403828|gb|EMJ09385.1| hypothetical protein
            PRUPE_ppa020985mg [Prunus persica]
          Length = 691

 Score =  673 bits (1736), Expect = 0.0
 Identities = 336/534 (62%), Positives = 410/534 (76%), Gaps = 4/534 (0%)
 Frame = +1

Query: 82   MTSVEESDVGILCYISKLPGFRGILKQRYSDFIVNEVGLDGNVVHLTSLDCPSEIAEEKK 261
            M + EE DVGI CYIS+LPGFRGILKQRYSDF+VNEV  + NVVHLT+LD P+E  +E +
Sbjct: 1    MKTTEEPDVGIFCYISQLPGFRGILKQRYSDFMVNEVDTEENVVHLTNLDAPAETVKEIE 60

Query: 262  EKTDDLVDRDFSQEIESFRVLAGDADVEKLKKLIDQVVSGVHNNGESVVLSPSSDKSHRT 441
             KT D   +D++ EIESFR L    D E+L+ +I+Q+ SG  ++   +VLSP  DKSHRT
Sbjct: 61   TKTHDATSKDYTTEIESFRSLVDPDDAERLEAIINQINSGSEDSILPIVLSPDYDKSHRT 120

Query: 442  AIHNFFKERMKFLVTDTLDGPDSSSKCIRVRLXXXXXXXXXXXXXXXXXXXXXPYDSRGS 621
            A+HNFFKE  KFLVTDT+DGPD+SSKCIRVR+                     P+DSRGS
Sbjct: 121  AVHNFFKENFKFLVTDTVDGPDASSKCIRVRINSGGQNSRGRNSRKRKERGDKPFDSRGS 180

Query: 622  DNWPENIGKFLRFHLYKENKDTQEXXXXXXXXXXXXPRSFGFAGTKDKRSVSTQRVTVFK 801
            D+W EN+GKFLRFHLYKENKDTQE            PRSFGFAGTKDKR+V+TQRVTVFK
Sbjct: 181  DDWSENVGKFLRFHLYKENKDTQEALGIIAKMLGIQPRSFGFAGTKDKRAVTTQRVTVFK 240

Query: 802  QRASRLAALNQKLIGIKVGNFCHVNEGLVLGQLQGNRFTITLRSIIAENEDIIKAAATAL 981
            Q ASRLAALN +LIGIKVG+FC+V EGLVLGQL GNRFTITLR ++A++ED IKA+  AL
Sbjct: 241  QLASRLAALNDRLIGIKVGDFCYVKEGLVLGQLLGNRFTITLRGVVADSEDTIKASVIAL 300

Query: 982  GKNGFINYFGLQRFGSSSIPTHLIGAALLQGEWQAAVNMVLEPREGE--KDATRKIREYY 1155
            GK GFINYFGLQRFGS S+PTHLIGA LL+GEW++ V++ L+PREG+         REYY
Sbjct: 301  GKQGFINYFGLQRFGSGSVPTHLIGATLLRGEWKSTVSLFLDPREGDILLMLLGIAREYY 360

Query: 1156 KESGDIEGTIRQLPRHLVAERAILQCFRQCPGNYLQALLAIPRTLRMMYVHSYQSYLWNH 1335
            KE+ DIEGT+RQLPRHLV+E+AILQC ++CPGNYLQAL AIPRTLRMMYVHSYQSYLWNH
Sbjct: 361  KETNDIEGTLRQLPRHLVSEKAILQCLKKCPGNYLQALKAIPRTLRMMYVHSYQSYLWNH 420

Query: 1336 AASMRVQNYGFHQVVLGDLVFCNKEESEK--ELITSVLECGDDEGDDTHIDCDLEDVPVT 1509
            AASMRVQ YG  +VVLGDLV+C   E+EK  E+++S  +C D+ G+DT    DL+D+  T
Sbjct: 421  AASMRVQKYGTDRVVLGDLVYCKGNETEKVSEVVSS--KCVDENGNDTLDPIDLDDISGT 478

Query: 1510 DLSEVQNASVKVISKEDIAAGKYTIEDIILPLPGSRVSYPSNEIGKIYHDLAKK 1671
            +L E +   VK ++ EDI +G YTI+D++LP+PGSRV +P N+I  ++HDLAKK
Sbjct: 479  NLPEERLNLVKAVTAEDILSGNYTIDDVVLPMPGSRVIFPENDIAHVFHDLAKK 532


>ref|XP_004302031.1| PREDICTED: multisubstrate pseudouridine synthase 7-like isoform 2
            [Fragaria vesca subsp. vesca]
          Length = 693

 Score =  665 bits (1716), Expect = 0.0
 Identities = 328/533 (61%), Positives = 404/533 (75%), Gaps = 5/533 (0%)
 Frame = +1

Query: 88   SVEESDVGILCYISKLPGFRGILKQRYSDFIVNEVGLDGNVVHLTSLDCPSEIAEEKKEK 267
            + +ES+VGI CYIS LPGFRGILKQRYSDF+VNEV ++GNVVHLT+L+ P E+ +E   K
Sbjct: 2    TTQESEVGIFCYISPLPGFRGILKQRYSDFMVNEVDMEGNVVHLTNLEAPPEVVKENGAK 61

Query: 268  TDDLVDRDFSQEIESFRVLAGDADVEKLKKLIDQVVSGVHNNGESVVLSPSSDKSHRTAI 447
            T+D   +D+S EIE FR LA   DVE+L+  I +V SG  +    +VLSP  DK HRTA+
Sbjct: 62   TEDAASKDYSAEIEKFRCLASGEDVERLEAFIREVNSGSEDGVMPIVLSPDYDKVHRTAV 121

Query: 448  HNFFKERMKFLVTDTLDGPDSSSKCIRVRLXXXXXXXXXXXXXXXXXXXXXPYDSRGSDN 627
            HNFFKE +KFLVTD +DGPD+SSKCIRVRL                     P+DSRG D+
Sbjct: 122  HNFFKENLKFLVTDAVDGPDASSKCIRVRLNSGGQNGRGRNSKKRKERGDKPFDSRGVDD 181

Query: 628  WPENIGKFLRFHLYKENKDTQEXXXXXXXXXXXXPRSFGFAGTKDKRSVSTQRVTVFKQR 807
            W E++GKFLRFHL+KENKDTQE            PR+FGFAGTKDKR+V+ QRVTVFKQ 
Sbjct: 182  WSEHVGKFLRFHLFKENKDTQEALGVIGKMLGIQPRAFGFAGTKDKRAVTCQRVTVFKQF 241

Query: 808  ASRLAALNQKLIGIKVGNFCHVNEGLVLGQLQGNRFTITLRSIIAENEDIIKAAATALGK 987
            ASRLAALN +LIGIKVG+FC+V EGL LGQL GNRFTITLR ++A++EDII+A+A ALGK
Sbjct: 242  ASRLAALNDRLIGIKVGDFCYVKEGLSLGQLLGNRFTITLRGVVADSEDIIQASANALGK 301

Query: 988  NGFINYFGLQRFGSSSIPTHLIGAALLQGEWQAAVNMVLEPREGEKDATRKIREYYKESG 1167
             GF+NYFGLQRFGS SIPTHLIGA+LL+GEW++ V+M+LEPREGE+D   + R+YYKES 
Sbjct: 302  QGFVNYFGLQRFGSGSIPTHLIGASLLRGEWKSTVSMMLEPREGERDVITEARKYYKESN 361

Query: 1168 DIEGTIRQLPRHLVAERAILQCFRQCPGNYLQALLAIPRTLRMMYVHSYQSYLWNHAASM 1347
            DI+GT+R+LPR+LVAERA+LQC ++CPGNY QAL A+PRTLRMMYVHSYQSYLWNHAASM
Sbjct: 362  DIDGTLRKLPRYLVAERAVLQCLKKCPGNYSQALKAVPRTLRMMYVHSYQSYLWNHAASM 421

Query: 1348 RVQNYGFHQVVLGDLVFCNKEESEKELITSVLEC-----GDDEGDDTHIDCDLEDVPVTD 1512
            RVQ YG  +VV+GDLV+C   E+EK       EC      D+  DDT     L+D+  T+
Sbjct: 422  RVQKYGTDRVVVGDLVYCKGHETEKVTGIVSSECVDENVNDENCDDTFDPNHLDDISETN 481

Query: 1513 LSEVQNASVKVISKEDIAAGKYTIEDIILPLPGSRVSYPSNEIGKIYHDLAKK 1671
            + E + + VK ++ EDI  G YTI+DI+LPLPGSRV +P N+I  ++HDLAKK
Sbjct: 482  VPEARVSLVKAVTAEDINNGTYTIDDIVLPLPGSRVIFPENDIAAVFHDLAKK 534


>ref|XP_004302030.1| PREDICTED: multisubstrate pseudouridine synthase 7-like isoform 1
            [Fragaria vesca subsp. vesca]
          Length = 701

 Score =  665 bits (1716), Expect = 0.0
 Identities = 328/533 (61%), Positives = 404/533 (75%), Gaps = 5/533 (0%)
 Frame = +1

Query: 88   SVEESDVGILCYISKLPGFRGILKQRYSDFIVNEVGLDGNVVHLTSLDCPSEIAEEKKEK 267
            + +ES+VGI CYIS LPGFRGILKQRYSDF+VNEV ++GNVVHLT+L+ P E+ +E   K
Sbjct: 2    TTQESEVGIFCYISPLPGFRGILKQRYSDFMVNEVDMEGNVVHLTNLEAPPEVVKENGAK 61

Query: 268  TDDLVDRDFSQEIESFRVLAGDADVEKLKKLIDQVVSGVHNNGESVVLSPSSDKSHRTAI 447
            T+D   +D+S EIE FR LA   DVE+L+  I +V SG  +    +VLSP  DK HRTA+
Sbjct: 62   TEDAASKDYSAEIEKFRCLASGEDVERLEAFIREVNSGSEDGVMPIVLSPDYDKVHRTAV 121

Query: 448  HNFFKERMKFLVTDTLDGPDSSSKCIRVRLXXXXXXXXXXXXXXXXXXXXXPYDSRGSDN 627
            HNFFKE +KFLVTD +DGPD+SSKCIRVRL                     P+DSRG D+
Sbjct: 122  HNFFKENLKFLVTDAVDGPDASSKCIRVRLNSGGQNGRGRNSKKRKERGDKPFDSRGVDD 181

Query: 628  WPENIGKFLRFHLYKENKDTQEXXXXXXXXXXXXPRSFGFAGTKDKRSVSTQRVTVFKQR 807
            W E++GKFLRFHL+KENKDTQE            PR+FGFAGTKDKR+V+ QRVTVFKQ 
Sbjct: 182  WSEHVGKFLRFHLFKENKDTQEALGVIGKMLGIQPRAFGFAGTKDKRAVTCQRVTVFKQF 241

Query: 808  ASRLAALNQKLIGIKVGNFCHVNEGLVLGQLQGNRFTITLRSIIAENEDIIKAAATALGK 987
            ASRLAALN +LIGIKVG+FC+V EGL LGQL GNRFTITLR ++A++EDII+A+A ALGK
Sbjct: 242  ASRLAALNDRLIGIKVGDFCYVKEGLSLGQLLGNRFTITLRGVVADSEDIIQASANALGK 301

Query: 988  NGFINYFGLQRFGSSSIPTHLIGAALLQGEWQAAVNMVLEPREGEKDATRKIREYYKESG 1167
             GF+NYFGLQRFGS SIPTHLIGA+LL+GEW++ V+M+LEPREGE+D   + R+YYKES 
Sbjct: 302  QGFVNYFGLQRFGSGSIPTHLIGASLLRGEWKSTVSMMLEPREGERDVITEARKYYKESN 361

Query: 1168 DIEGTIRQLPRHLVAERAILQCFRQCPGNYLQALLAIPRTLRMMYVHSYQSYLWNHAASM 1347
            DI+GT+R+LPR+LVAERA+LQC ++CPGNY QAL A+PRTLRMMYVHSYQSYLWNHAASM
Sbjct: 362  DIDGTLRKLPRYLVAERAVLQCLKKCPGNYSQALKAVPRTLRMMYVHSYQSYLWNHAASM 421

Query: 1348 RVQNYGFHQVVLGDLVFCNKEESEKELITSVLEC-----GDDEGDDTHIDCDLEDVPVTD 1512
            RVQ YG  +VV+GDLV+C   E+EK       EC      D+  DDT     L+D+  T+
Sbjct: 422  RVQKYGTDRVVVGDLVYCKGHETEKVTGIVSSECVDENVNDENCDDTFDPNHLDDISETN 481

Query: 1513 LSEVQNASVKVISKEDIAAGKYTIEDIILPLPGSRVSYPSNEIGKIYHDLAKK 1671
            + E + + VK ++ EDI  G YTI+DI+LPLPGSRV +P N+I  ++HDLAKK
Sbjct: 482  VPEARVSLVKAVTAEDINNGTYTIDDIVLPLPGSRVIFPENDIAAVFHDLAKK 534


>ref|XP_006432989.1| hypothetical protein CICLE_v10003382mg [Citrus clementina]
            gi|557535111|gb|ESR46229.1| hypothetical protein
            CICLE_v10003382mg [Citrus clementina]
          Length = 697

 Score =  664 bits (1714), Expect = 0.0
 Identities = 335/534 (62%), Positives = 411/534 (76%), Gaps = 4/534 (0%)
 Frame = +1

Query: 82   MTSVEESDVGILCYISKLPGFRGILKQRYSDFIVNEVGLDGNVVHLTSLDCPSEIA--EE 255
            M +V+ESD GILC+IS LPGFRGILKQRY DFIVNEV  D  VVHLTSLD P E A  E 
Sbjct: 1    MKTVDESDAGILCFISNLPGFRGILKQRYCDFIVNEVDTDRKVVHLTSLDVPPEEAAVEH 60

Query: 256  KKEKTDDLVDRDFSQEIESFRVLAGDADVEKLKKLIDQVVSGVHNNG-ESVVLSPSSDKS 432
             + K  D ++R ++ EIESFR LAGD+D + L+ LI+QV SG + +    +VLS +SDKS
Sbjct: 61   NETKASDQLNRSYASEIESFRSLAGDSDAQCLETLINQVTSGKNEDSIPPIVLSANSDKS 120

Query: 433  HRTAIHNFFKERMKFLVTDTLDGPDSSSKCIRVRLXXXXXXXXXXXXXXXXXXXXX-PYD 609
            HRTAIHNFFK+  KFLVTDT+DGPD+SSKCIRVRL                      P+D
Sbjct: 121  HRTAIHNFFKDNFKFLVTDTVDGPDASSKCIRVRLNSGGNNNSMGRNSKKRKERGDNPFD 180

Query: 610  SRGSDNWPENIGKFLRFHLYKENKDTQEXXXXXXXXXXXXPRSFGFAGTKDKRSVSTQRV 789
            SRGS+NWPE +GKFLRFHLYKENKDTQE            PRSFGFAGTKDKRSVSTQRV
Sbjct: 181  SRGSENWPEQLGKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRV 240

Query: 790  TVFKQRASRLAALNQKLIGIKVGNFCHVNEGLVLGQLQGNRFTITLRSIIAENEDIIKAA 969
            TVFKQRAS+LAALN++LIGI++G+FC+V EGL+LGQL GNRFTITLR ++ ++ED+IKA+
Sbjct: 241  TVFKQRASKLAALNKRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDSEDVIKAS 300

Query: 970  ATALGKNGFINYFGLQRFGSSSIPTHLIGAALLQGEWQAAVNMVLEPREGEKDATRKIRE 1149
            A +LG+NGFINYFGLQRFGS S+PTHL+GA LL+GEW++AV M+L+PREG+     K RE
Sbjct: 301  ANSLGRNGFINYFGLQRFGSGSVPTHLVGATLLRGEWKSAVKMILDPREGD-ILLFKARE 359

Query: 1150 YYKESGDIEGTIRQLPRHLVAERAILQCFRQCPGNYLQALLAIPRTLRMMYVHSYQSYLW 1329
            YYKE+ DI+GT+R+LPRHLVAERAILQC ++CPGNYLQAL AIPRTLRMMYVHSYQS+LW
Sbjct: 360  YYKETDDIDGTLRKLPRHLVAERAILQCLKKCPGNYLQALKAIPRTLRMMYVHSYQSFLW 419

Query: 1330 NHAASMRVQNYGFHQVVLGDLVFCNKEESEKELITSVLECGDDEGDDTHIDCDLEDVPVT 1509
            NHAAS RVQ +G   VV+GDLVFC  +++EKEL     E   +  +D      L++VP T
Sbjct: 420  NHAASARVQKHGTEHVVVGDLVFCKGDDTEKELGCVNPEFEYESSNDADDSSHLDEVPET 479

Query: 1510 DLSEVQNASVKVISKEDIAAGKYTIEDIILPLPGSRVSYPSNEIGKIYHDLAKK 1671
            D  + ++  VK ++ EDI +GKYTI+D++LPLPGSRV YP N++ ++YH LA+K
Sbjct: 480  DHPDGRHNLVKTVTAEDINSGKYTIDDVVLPLPGSRVIYPMNDVAEVYHHLAEK 533


>ref|XP_007030611.1| Pseudouridine synthase family protein, putative isoform 1 [Theobroma
            cacao] gi|508719216|gb|EOY11113.1| Pseudouridine synthase
            family protein, putative isoform 1 [Theobroma cacao]
          Length = 763

 Score =  661 bits (1706), Expect = 0.0
 Identities = 338/574 (58%), Positives = 419/574 (72%), Gaps = 31/574 (5%)
 Frame = +1

Query: 43   QSPLLL*NPCLASMTSVEESDVGILCYISKLPGFRGILKQRYSDFIVNEVGLDGNVVHLT 222
            ++P++  +  L  MT++ ESDVGILC+IS LPGFRGILKQRYSDFIVNEV  +GNVVHLT
Sbjct: 30   KTPVIKSSNSLTLMTTITESDVGILCFISHLPGFRGILKQRYSDFIVNEVDTEGNVVHLT 89

Query: 223  SLDCPSEI-------------AEEKKEKTDDLVDRDFSQEIESFRVLAGDADVEKLKKLI 363
            SLD P E+              +E + KT D +++ ++ EI  FR LAGD D ++L+  I
Sbjct: 90   SLDAPPEVMIDVFSLNKFTQAVQEGETKTPDQLNKCYASEIIKFRSLAGDTDADRLEAFI 149

Query: 364  DQVVSGVHNNGESVVLSPSSDKSHRTAIHNFFKERMKFLVTDTLDGPDSSSKCIRVRLXX 543
            +Q+ SG   +   +VLSP SDKSHRTA+HNFFKE ++FLVTDT+DGPDSSSKCIRVRL  
Sbjct: 150  NQITSGSEEDICPIVLSPDSDKSHRTAMHNFFKENLRFLVTDTVDGPDSSSKCIRVRLNS 209

Query: 544  XXXXXXXXXXXXXXXXXXXPYDSRGSDNWPENIGKFLRFHLYKENKDTQEXXXXXXXXXX 723
                               PYDSRGS +WPE++GKFLRFHLYKENKDTQE          
Sbjct: 210  GNNNKGRNSKKRKERGDK-PYDSRGSSHWPEHLGKFLRFHLYKENKDTQEALGLIGKMLG 268

Query: 724  XXPRSFGFAGTKDKRSVSTQRVTVFKQRASRLAALNQKLIGIKVGNFCHVNEGLVLGQLQ 903
              PRSFGFAGTKDKRSVSTQRVTVFKQ ASRLAALN++LIGIKVG+FC+V +  +LGQL 
Sbjct: 269  IQPRSFGFAGTKDKRSVSTQRVTVFKQHASRLAALNERLIGIKVGDFCYVKDDFLLGQLL 328

Query: 904  GNRFTITLRSIIAENEDIIKAAATALGKNGFINYFGLQRFGSSSIPTHLIGAALLQGEWQ 1083
            GNRFTI LR I+A++E+ IKA+  +LG++GFINYFGLQRFGS SIPTH IGA LL+GEWQ
Sbjct: 329  GNRFTIILRGIVADSEETIKASVESLGRHGFINYFGLQRFGSGSIPTHRIGATLLRGEWQ 388

Query: 1084 AAVNMVLEPREGEKDA------------------TRKIREYYKESGDIEGTIRQLPRHLV 1209
            AA + +L+PREG+  +                  T++ REYYKE+GDIEGT+RQLPRHLV
Sbjct: 389  AAASTILDPREGDILSLTFFFPFLLGKALFRCLTTQRAREYYKETGDIEGTLRQLPRHLV 448

Query: 1210 AERAILQCFRQCPGNYLQALLAIPRTLRMMYVHSYQSYLWNHAASMRVQNYGFHQVVLGD 1389
            AERA+LQC ++CPGNYLQAL AIPRTLRMMYVHSYQSYLWNHAASMRV+ YG ++VVLGD
Sbjct: 449  AERAMLQCLKKCPGNYLQALKAIPRTLRMMYVHSYQSYLWNHAASMRVEKYGSNEVVLGD 508

Query: 1390 LVFCNKEESEKELITSVLECGDDEGDDTHIDCDLEDVPVTDLSEVQNASVKVISKEDIAA 1569
            LV+C   ++EK  +    E  D+  +D +    L+++  TDL E +N  VK I+  DI+ 
Sbjct: 509  LVYCKGNDAEKVKVVP-SEHEDNNFEDAYDCSQLDEISGTDLPEGKNNLVKAITAADIST 567

Query: 1570 GKYTIEDIILPLPGSRVSYPSNEIGKIYHDLAKK 1671
            G YTIED++LP+PGSR+ YP N+I  +YHD+AKK
Sbjct: 568  GNYTIEDVVLPMPGSRIIYPVNDIANVYHDMAKK 601


>ref|NP_187133.3| pseudouridine synthase [Arabidopsis thaliana]
            gi|52354299|gb|AAU44470.1| hypothetical protein AT3G04820
            [Arabidopsis thaliana] gi|61742699|gb|AAX55170.1|
            hypothetical protein At3g04820 [Arabidopsis thaliana]
            gi|332640619|gb|AEE74140.1| pseudouridine synthase
            [Arabidopsis thaliana]
          Length = 715

 Score =  661 bits (1706), Expect = 0.0
 Identities = 334/533 (62%), Positives = 413/533 (77%), Gaps = 3/533 (0%)
 Frame = +1

Query: 82   MTSVEESDVGILCYISKLPGFRGILKQRYSDFIVNEVGLDGNVVHLTSLDCPSEIA--EE 255
            M +V+E+DVGI C+IS+LPGFRGILKQRY+DFIVNEV +DGNVVHLTSLD P E+A  EE
Sbjct: 37   MKTVDEADVGISCFISQLPGFRGILKQRYADFIVNEVDMDGNVVHLTSLDLPPEMAVKEE 96

Query: 256  KKEKTDDLVDRDFSQEIESFRVLAGDADVEKLKKLIDQVVSGVHNNGESVVLSPSSDKSH 435
             K K+ D V ++++  +ESF+ ++   D E+L+ LI+QV SG       VVL PSSDKS 
Sbjct: 97   DKAKSCDNVPQNYTSAVESFKSISSVTDAERLEILINQVTSGTDGEVLPVVLDPSSDKSK 156

Query: 436  RTAIHNFFKERMKFLVTDTLDGPDSSSKCIRVRLXXXXXXXXXXXXXXXXXXXXXPYDSR 615
            RTAIHNF KE  KFLVTDT+DGPDS+SKCIRVR+                     P+DSR
Sbjct: 157  RTAIHNFVKENFKFLVTDTVDGPDSTSKCIRVRVNSGANNNRGNRSKKRKERGDKPFDSR 216

Query: 616  GSDNWPENIGKFLRFHLYKENKDTQEXXXXXXXXXXXXPRSFGFAGTKDKRSVSTQRVTV 795
            GS++WPE++GKFLRFHLYKENKDTQE            P+SFGF+GTKDKRSVSTQRVTV
Sbjct: 217  GSEHWPEHVGKFLRFHLYKENKDTQEALGLIGKMLGVQPKSFGFSGTKDKRSVSTQRVTV 276

Query: 796  FKQRASRLAALNQKLIGIKVGNFCHVNEGLVLGQLQGNRFTITLRSIIAENEDIIKAAAT 975
            FKQ+AS+LAALN++L GIKVG+FC+V EGL+LGQL GNRFTITLR ++A++E+ IK +A 
Sbjct: 277  FKQQASKLAALNKRLFGIKVGDFCNVKEGLLLGQLMGNRFTITLRGVVADSEETIKQSAE 336

Query: 976  ALGKNGFINYFGLQRFGSSSIPTHLIGAALLQGEWQAAVNMVLEPREGEKDATRKIREYY 1155
            +LGK+GFINYFGLQRFGS S+PTH +GAALL+GEW+ AV+M+L+PRE E+      REYY
Sbjct: 337  SLGKDGFINYFGLQRFGSGSVPTHHVGAALLKGEWKDAVDMILDPRETERHVVNDAREYY 396

Query: 1156 KESGDIEGTIRQLPRHLVAERAILQCFRQCPGNYLQALLAIPRTLRMMYVHSYQSYLWNH 1335
            KE+GDI+GT+RQLPR+LVAERAILQC ++CPGNYLQAL  IPRTLRMMYVHSYQSYLWN+
Sbjct: 397  KETGDIDGTLRQLPRYLVAERAILQCLKKCPGNYLQALKGIPRTLRMMYVHSYQSYLWNN 456

Query: 1336 AASMRVQNYGFHQVVLGDLVFCNKEESEKELITSVLECGDDEGDDTHIDCD-LEDVPVTD 1512
            AAS+RV+NYG  QVVLGDLV   K ++ K ++ S L    +E  +  +DCD ++D  V D
Sbjct: 457  AASLRVKNYGTSQVVLGDLV-STKVDAAKRMVDS-LTSEHNESSEEALDCDQVDDTAVVD 514

Query: 1513 LSEVQNASVKVISKEDIAAGKYTIEDIILPLPGSRVSYPSNEIGKIYHDLAKK 1671
            L   ++  VKV+S ED+ AG Y+  DI+LPLPGSRV YPSN+I +IYHDLAKK
Sbjct: 515  LPAERSDLVKVVSIEDLEAGTYSTSDIVLPLPGSRVIYPSNDIAEIYHDLAKK 567


>ref|XP_004142573.1| PREDICTED: putative pseudouridine synthase C1A4.09-like [Cucumis
            sativus]
          Length = 719

 Score =  652 bits (1682), Expect = 0.0
 Identities = 334/548 (60%), Positives = 412/548 (75%), Gaps = 5/548 (0%)
 Frame = +1

Query: 73   LASMT--SVEESDVGILCYISKLPGFRGILKQRYSDFIVNEVGLDGNVVHLTSLDCPSE- 243
            +A MT  SV ESDVGIL YIS LPGFRGILKQRYSDFIVNEV  DGNVVHLTSLD P E 
Sbjct: 35   IAVMTTKSVGESDVGILSYISSLPGFRGILKQRYSDFIVNEVDTDGNVVHLTSLDAPPEV 94

Query: 244  IAEEKKEKTDDLVDRDFSQEIESFRVLAGDADVEKLKKLIDQVVSGVHNNGESVVLSPSS 423
            I  E          + ++ EIE FR LAGD+D E L+  + Q+ SGV+++   +V SP +
Sbjct: 95   IVSESGPTIVHSTSQSYASEIELFRSLAGDSDAEILEIFLKQINSGVNDDILPIVFSPDT 154

Query: 424  DKSHRTAIHNFFKERMKFLVTDTLDGPDSSSKCIRVRLXXXXXXXXXXXXXXXXXXXXXP 603
            DK+HRTA+HNFFK + KFLVTDT+DGPDSSSKC+RVR+                     P
Sbjct: 155  DKTHRTAVHNFFK-KFKFLVTDTIDGPDSSSKCVRVRVDSGAQNNRGRFSKKRKERGDKP 213

Query: 604  YDSRGSDNWPENIGKFLRFHLYKENKDTQEXXXXXXXXXXXXPRSFGFAGTKDKRSVSTQ 783
            +DSRGSDNWPE++GKFLRFHLYKENKDTQE             RSFGFAGTKDKRS+STQ
Sbjct: 214  FDSRGSDNWPEHVGKFLRFHLYKENKDTQEALGLIGKMLGIQTRSFGFAGTKDKRSISTQ 273

Query: 784  RVTVFKQRASRLAALNQKLIGIKVGNFCHVNEGLVLGQLQGNRFTITLRSIIAENEDIIK 963
            RVTVFKQ ASR+AALN +LIGIK+GNF ++ EGL+LGQL GNRFTITLR ++A +ED+IK
Sbjct: 274  RVTVFKQHASRIAALNDRLIGIKLGNFSYIQEGLLLGQLLGNRFTITLRGVVANSEDVIK 333

Query: 964  AAATALGKNGFINYFGLQRFGSSSIPTHLIGAALLQGEWQAAVNMVLEPREGEKDATRKI 1143
            A+A ALG++GFINYFGLQRFGS S+PTHL+GA+LL+GEW+ AVNM+L+PREG+     + 
Sbjct: 334  ASAEALGRHGFINYFGLQRFGSGSVPTHLVGASLLRGEWKGAVNMILDPREGDILLLMRA 393

Query: 1144 REYYKESGDIEGTIRQLPRHLVAERAILQCFRQCPGNYLQALLAIPRTLRMMYVHSYQSY 1323
            R+YYKES DI+GT++QLPR+LVAERAILQC ++CPGNYLQAL AIPRTLRMMYVHSYQSY
Sbjct: 394  RDYYKESDDIDGTLKQLPRYLVAERAILQCLKKCPGNYLQALKAIPRTLRMMYVHSYQSY 453

Query: 1324 LWNHAASMRVQNYGFHQVVLGDLVFCNKEESEKELITSVLECGDDE-GDDTHID-CDLED 1497
            LWNHAASMRVQ YG  +VV+GDLV+C +  +E   + +  E  D++ GD    D C LE+
Sbjct: 454  LWNHAASMRVQKYGIDKVVVGDLVYCKENHTETAAVQNSEEYEDEDCGDANSYDSCHLEE 513

Query: 1498 VPVTDLSEVQNASVKVISKEDIAAGKYTIEDIILPLPGSRVSYPSNEIGKIYHDLAKKVH 1677
            V    L   ++  VK ++  D+ +G +TI+D++LPLPGSRV YP+N+I ++Y+DLA K  
Sbjct: 514  VCKLGLPTERHKLVKAVTAGDVLSGNFTIDDVVLPLPGSRVLYPTNDIAEVYNDLATK-- 571

Query: 1678 DSM*YLNS 1701
            DS+   NS
Sbjct: 572  DSISLTNS 579


>ref|XP_006408145.1| hypothetical protein EUTSA_v10022286mg, partial [Eutrema salsugineum]
            gi|557109291|gb|ESQ49598.1| hypothetical protein
            EUTSA_v10022286mg, partial [Eutrema salsugineum]
          Length = 692

 Score =  645 bits (1663), Expect = 0.0
 Identities = 329/539 (61%), Positives = 411/539 (76%), Gaps = 3/539 (0%)
 Frame = +1

Query: 64   NPCLASMTSVEESDVGILCYISKLPGFRGILKQRYSDFIVNEVGLDGNVVHLTSLDCPSE 243
            NP L S  +V+ESDVGI C+IS+LPGFRGILKQRY+DFIVNEV +DGNVVHLTSLD   E
Sbjct: 34   NP-LESKKTVDESDVGISCFISQLPGFRGILKQRYADFIVNEVDMDGNVVHLTSLDVSPE 92

Query: 244  IAEEKKEKT--DDLVDRDFSQEIESFRVLAGDADVEKLKKLIDQVVSGVHNNGESVVLSP 417
            + E+++EKT   D V + ++  IESFR ++   D E+L+ LI+QV S   +    VV  P
Sbjct: 93   MDEKEEEKTKSSDDVPQSYASAIESFRSISSVTDAERLETLINQVTSVTDDEISPVVFDP 152

Query: 418  SSDKSHRTAIHNFFKERMKFLVTDTLDGPDSSSKCIRVRLXXXXXXXXXXXXXXXXXXXX 597
            SSDKS RTAIHNF KE  KFLVTDT+DGPD +SKCIRVR+                    
Sbjct: 153  SSDKSKRTAIHNFVKENFKFLVTDTVDGPDPTSKCIRVRVNSADHNSRGKRSKKRKERGD 212

Query: 598  XPYDSRGSDNWPENIGKFLRFHLYKENKDTQEXXXXXXXXXXXXPRSFGFAGTKDKRSVS 777
             P+DSRGS++WPE++GKF++FHLYKENKDTQE            P+SFGF+GTKDKRSVS
Sbjct: 213  KPFDSRGSEHWPEHLGKFVKFHLYKENKDTQEALGLIGKMLGVQPKSFGFSGTKDKRSVS 272

Query: 778  TQRVTVFKQRASRLAALNQKLIGIKVGNFCHVNEGLVLGQLQGNRFTITLRSIIAENEDI 957
            +QRVTVFKQ+AS+LAALN++L GIKVG+FCHV EGL+LGQL GNRFTITLR ++A++E+ 
Sbjct: 273  SQRVTVFKQQASKLAALNKRLFGIKVGDFCHVKEGLLLGQLMGNRFTITLRGVVADSEET 332

Query: 958  IKAAATALGKNGFINYFGLQRFGSSSIPTHLIGAALLQGEWQAAVNMVLEPREGEKDATR 1137
            IK +A +LGK+GFINYFGLQRFGS S+PTH +GAA+L+GEW+ AV+M+L+PRE       
Sbjct: 333  IKKSAESLGKDGFINYFGLQRFGSGSVPTHHVGAAVLKGEWKEAVDMILDPRE-----IN 387

Query: 1138 KIREYYKESGDIEGTIRQLPRHLVAERAILQCFRQCPGNYLQALLAIPRTLRMMYVHSYQ 1317
            + REYYKE+GDI+GT+RQLPR+LVAERAILQC ++CPGNYLQAL  IPRTLRMMYVHSYQ
Sbjct: 388  EAREYYKETGDIDGTLRQLPRYLVAERAILQCLKKCPGNYLQALKGIPRTLRMMYVHSYQ 447

Query: 1318 SYLWNHAASMRVQNYGFHQVVLGDLVFCNKEESEKELITSVLECGDDEGDDTHIDCD-LE 1494
            SYLWN+AAS+RVQ YG +QVVLGDLV    +++++  I   L     E ++  +DCD L+
Sbjct: 448  SYLWNNAASLRVQKYGTNQVVLGDLVSTKVDDAKR--IVGSLTSEHKENNEEALDCDQLD 505

Query: 1495 DVPVTDLSEVQNASVKVISKEDIAAGKYTIEDIILPLPGSRVSYPSNEIGKIYHDLAKK 1671
            D  V DLS  ++  VKV+  ED+ AG Y+  DI+LPLPGSRV YPSN+I +IYH+LAKK
Sbjct: 506  DTAVVDLSGERSDLVKVVDIEDMEAGTYSTSDIVLPLPGSRVIYPSNDIAEIYHNLAKK 564


>ref|XP_002884472.1| pseudouridylate synthase [Arabidopsis lyrata subsp. lyrata]
            gi|297330312|gb|EFH60731.1| pseudouridylate synthase
            [Arabidopsis lyrata subsp. lyrata]
          Length = 710

 Score =  640 bits (1650), Expect = 0.0
 Identities = 331/534 (61%), Positives = 401/534 (75%), Gaps = 4/534 (0%)
 Frame = +1

Query: 82   MTSVEESDVGILCYISKLPGFRGILKQR-YSDFIVNEVGLDGNVVHLTSLDCPSE--IAE 252
            MT+V+E+DVGI C+IS+LPGFRGILKQR Y+DFIVNEV +DGNVVHLTSLD P E  + E
Sbjct: 37   MTTVDEADVGISCFISQLPGFRGILKQRSYADFIVNEVDIDGNVVHLTSLDLPPEMDVKE 96

Query: 253  EKKEKTDDLVDRDFSQEIESFRVLAGDADVEKLKKLIDQVVSGVHNNGESVVLSPSSDKS 432
            E K KT D V ++++  IESFR ++   D E+L+ LI+QV SG  +    VVL PSSDKS
Sbjct: 97   EDKTKTSDNVPQNYTSAIESFRSISSVTDAERLETLINQVTSGTDDEISPVVLDPSSDKS 156

Query: 433  HRTAIHNFFKERMKFLVTDTLDGPDSSSKCIRVRLXXXXXXXXXXXXXXXXXXXXXPYDS 612
             RTAIHNF KE  KFLVTDT+DGPDS+SKCIRVR+                     P+DS
Sbjct: 157  KRTAIHNFVKENFKFLVTDTVDGPDSTSKCIRVRVNSGAHNNRGNRSKKRKERGDKPFDS 216

Query: 613  RGSDNWPENIGKFLRFHLYKENKDTQEXXXXXXXXXXXXPRSFGFAGTKDKRSVSTQRVT 792
            RGS++WPE++GKFLRFHLYKENKDTQE            P+SFGF+GTKDKRSVSTQRVT
Sbjct: 217  RGSEHWPEHVGKFLRFHLYKENKDTQEALGLIGKMLGVQPKSFGFSGTKDKRSVSTQRVT 276

Query: 793  VFKQRASRLAALNQKLIGIKVGNFCHVNEGLVLGQLQGNRFTITLRSIIAENEDIIKAAA 972
            VFKQ+AS+LAALN++L GIKVG+FCHV EGL+LGQL GNRFTITLR ++A++E+ IK +A
Sbjct: 277  VFKQQASKLAALNKRLFGIKVGDFCHVKEGLLLGQLMGNRFTITLRGVVADSEETIKKSA 336

Query: 973  TALGKNGFINYFGLQRFGSSSIPTHLIGAALLQGEWQAAVNMVLEPREGEKDATRKIREY 1152
             +LGK+GFINYFGLQRFGS S+PTH +GAALL+GEW+ A                  REY
Sbjct: 337  ESLGKDGFINYFGLQRFGSGSVPTHHVGAALLKGEWKDA------ECSNAWHVVNDAREY 390

Query: 1153 YKESGDIEGTIRQLPRHLVAERAILQCFRQCPGNYLQALLAIPRTLRMMYVHSYQSYLWN 1332
            YKE+GDI+GT+RQLPR+LVAERAILQC ++CPGNYLQAL  IPRTLRMMYVHSYQSYLWN
Sbjct: 391  YKETGDIDGTLRQLPRYLVAERAILQCLKKCPGNYLQALKGIPRTLRMMYVHSYQSYLWN 450

Query: 1333 HAASMRVQNYGFHQVVLGDLVFCNKEESEKELITSVLECGDDEGDDTHIDCD-LEDVPVT 1509
            +AAS+RV  YG  QVVLGDLV   K ++EK ++ S L    +E  +  +DCD ++D  V 
Sbjct: 451  NAASLRVTKYGTSQVVLGDLV-STKVDAEKRMVDS-LTSEHNESSEEALDCDQVDDTAVV 508

Query: 1510 DLSEVQNASVKVISKEDIAAGKYTIEDIILPLPGSRVSYPSNEIGKIYHDLAKK 1671
            DL   ++  VKV+S ED+ AG Y   DI+LPLPGSRV YPSN+I +IYHDLAKK
Sbjct: 509  DLPAERSDLVKVVSIEDLEAGTYLTSDIVLPLPGSRVIYPSNDIAEIYHDLAKK 562


>ref|XP_006300094.1| hypothetical protein CARUB_v10016322mg [Capsella rubella]
            gi|482568803|gb|EOA32992.1| hypothetical protein
            CARUB_v10016322mg [Capsella rubella]
          Length = 704

 Score =  634 bits (1635), Expect = e-179
 Identities = 324/536 (60%), Positives = 400/536 (74%), Gaps = 3/536 (0%)
 Frame = +1

Query: 73   LASMTSVEESDVGILCYISKLPGFRGILKQRYSDFIVNEVGLDGNVVHLTSLDCPSE--I 246
            +  M +V+E+DVGI C+IS+LPGFRGILKQRY+DFIVNEV ++GNVVHLTSLD P E  +
Sbjct: 36   IEGMKTVDEADVGISCFISQLPGFRGILKQRYADFIVNEVDINGNVVHLTSLDLPPEMDV 95

Query: 247  AEEKKEKTDDLVDRDFSQEIESFRVLAGDADVEKLKKLIDQVVSGVHNNGESVVLSPSSD 426
             EE K K+ D V ++++  IESF+ ++   D E+L+ LI+QV SG  +    VVL PSSD
Sbjct: 96   KEEDKTKSSDNVPQNYTSAIESFKSISNATDAERLETLINQVTSGTDDEISPVVLDPSSD 155

Query: 427  KSHRTAIHNFFKERMKFLVTDTLDGPDSSSKCIRVRLXXXXXXXXXXXXXXXXXXXXXPY 606
            KS RTAIHNF KE  KFLVTDT+DGPDS+SKCIRVR+                     P+
Sbjct: 156  KSKRTAIHNFVKENFKFLVTDTVDGPDSTSKCIRVRVNSGAHNNRGNRSKKRKERGDKPF 215

Query: 607  DSRGSDNWPENIGKFLRFHLYKENKDTQEXXXXXXXXXXXXPRSFGFAGTKDKRSVSTQR 786
            DSRGS++WPE++GKFLRFHLYKENKDTQE            P+SFGF+GTKDKRSVSTQ 
Sbjct: 216  DSRGSEHWPEHVGKFLRFHLYKENKDTQEALGLIGKMLGVQPKSFGFSGTKDKRSVSTQC 275

Query: 787  VTVFKQRASRLAALNQKLIGIKVGNFCHVNEGLVLGQLQGNRFTITLRSIIAENEDIIKA 966
            VTVFKQ+AS+LAALN++L GIKVG+FCHV EGL+LGQL GNRFTITLR ++A++E+ IK 
Sbjct: 276  VTVFKQQASKLAALNKRLFGIKVGDFCHVKEGLLLGQLMGNRFTITLRGVVADSEETIKK 335

Query: 967  AATALGKNGFINYFGLQRFGSSSIPTHLIGAALLQGEWQAAVNMVLEPREGEKDATRKIR 1146
            +A +LGK+GFINYFGLQRFGS S+PTH +GAALL+GEW+ A       R          R
Sbjct: 336  SAESLGKDGFINYFGLQRFGSGSVPTHHVGAALLKGEWKDA------ERINAWHVVNDAR 389

Query: 1147 EYYKESGDIEGTIRQLPRHLVAERAILQCFRQCPGNYLQALLAIPRTLRMMYVHSYQSYL 1326
            EYYKE+GDI+GT+RQLPR+LVAERAILQC ++CPGNYLQAL  IPRTLRMMYVHSYQSYL
Sbjct: 390  EYYKETGDIDGTLRQLPRYLVAERAILQCLKKCPGNYLQALKGIPRTLRMMYVHSYQSYL 449

Query: 1327 WNHAASMRVQNYGFHQVVLGDLVFCNKEESEKELITSVLECGDDEGDDTHIDCD-LEDVP 1503
            WN+AAS+RV+ YG  QVVLGDLV    + ++K   TS       E ++  +DCD ++D  
Sbjct: 450  WNNAASLRVKKYGTSQVVLGDLVSTKIDATKKMADTS----EHKENNEDALDCDQVDDTA 505

Query: 1504 VTDLSEVQNASVKVISKEDIAAGKYTIEDIILPLPGSRVSYPSNEIGKIYHDLAKK 1671
            + DL   ++  VKV+S ED+ AG Y+  DI+LPLPGSRV YPSN+I +IYHDLAKK
Sbjct: 506  IVDLPAERSDLVKVVSVEDLEAGTYSTSDIVLPLPGSRVIYPSNDIAEIYHDLAKK 561