BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Mentha28_contig00025756
         (949 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|EYU34894.1| hypothetical protein MIMGU_mgv1a005743mg [Mimulus...   383   e-104
gb|EYU34893.1| hypothetical protein MIMGU_mgv1a005743mg [Mimulus...   360   5e-97
ref|XP_006339932.1| PREDICTED: RNA polymerase II-associated prot...   301   2e-79
ref|XP_006339933.1| PREDICTED: RNA polymerase II-associated prot...   295   2e-77
ref|XP_004248819.1| PREDICTED: RNA polymerase II-associated prot...   291   3e-76
ref|XP_006339935.1| PREDICTED: RNA polymerase II-associated prot...   290   4e-76
ref|XP_007031159.1| Tetratricopeptide repeat (TPR)-like superfam...   286   1e-74
emb|CBI39598.3| unnamed protein product [Vitis vinifera]              285   1e-74
ref|XP_007031161.1| Tetratricopeptide repeat (TPR)-like superfam...   285   2e-74
ref|XP_007031158.1| Tetratricopeptide repeat-like superfamily pr...   285   2e-74
ref|XP_002277910.2| PREDICTED: RNA polymerase II-associated prot...   285   2e-74
ref|XP_006339934.1| PREDICTED: RNA polymerase II-associated prot...   283   9e-74
ref|XP_004302236.1| PREDICTED: RNA polymerase II-associated prot...   276   9e-72
ref|XP_006382393.1| hypothetical protein POPTR_0005s01710g [Popu...   275   1e-71
ref|XP_006392426.1| hypothetical protein EUTSA_v10023436mg [Eutr...   265   3e-68
ref|XP_004144746.1| PREDICTED: RNA polymerase II-associated prot...   262   1e-67
ref|XP_006433540.1| hypothetical protein CICLE_v10003914mg [Citr...   260   6e-67
ref|XP_006472205.1| PREDICTED: RNA polymerase II-associated prot...   257   4e-66
ref|NP_176039.2| carboxylate clamp-tetratricopeptide repeat prot...   257   4e-66
ref|NP_001185250.1| carboxylate clamp-tetratricopeptide repeat p...   257   4e-66

>gb|EYU34894.1| hypothetical protein MIMGU_mgv1a005743mg [Mimulus guttatus]
          Length = 472

 Score =  383 bits (984), Expect = e-104
 Identities = 201/302 (66%), Positives = 239/302 (79%), Gaps = 2/302 (0%)
 Frame = +1

Query: 46  MAKVPPKHSRDQLRDVEGLLNNLQDWELSFKEKDKKLRADTLGRGKL-DNPSQSSYNDSS 222
           MAK P KHSRD  +++EGLLNNLQDWELSFKEKDKK+R+D +G+ KL D   Q S N+  
Sbjct: 1   MAKTPSKHSRDLPQELEGLLNNLQDWELSFKEKDKKMRSDAVGKAKLKDQLGQPSGNNVG 60

Query: 223 RLSDNPRVDGRKTRDKTSSAYNTNTVRQHDHLKKYEELSQLASTVSSKEGVVDANSEKEL 402
           R  D+ +V  ++T +KT S  N +TV+Q+DHLK+YE LS+L+S V S E  VDANSEKEL
Sbjct: 61  RPYDSAKVHRKQTMEKTPSYENPSTVKQYDHLKEYEALSRLSSAVPSTESFVDANSEKEL 120

Query: 403 GNEFFKQKKFNEAIDCYSRSIALSPTAVAYANRAMAYIKVKRFQEAENDCTEALNLDDRY 582
           GNEFFKQKKF EAIDCYSRSIALSP+AVAYANRAMAYIK++RFQEAENDCTEALNLDDRY
Sbjct: 121 GNEFFKQKKFTEAIDCYSRSIALSPSAVAYANRAMAYIKIRRFQEAENDCTEALNLDDRY 180

Query: 583 IKAYSRRSTARKELGKLKQSIDDVEFALRLEPQNQDIKKQHAECKALLEKEIMKKASGAL 762
           IKAYSRRSTARKELGKLK+S+DD EFALRLEPQNQ+IKKQ AE K+LLEK I+KK SGAL
Sbjct: 181 IKAYSRRSTARKELGKLKESMDDAEFALRLEPQNQEIKKQFAESKSLLEKAILKKVSGAL 240

Query: 763 AGPLEGAHKGKVEADKKKYALNSPAGRVAKFVEDDSKAN-IIEVSNQESVEHKGSTILSN 939
            G +EGA  GK E DK        +GRV + +E++ K N   EV+   S+E K +++ SN
Sbjct: 241 TGSVEGAQPGKSEVDKNNNVQKPLSGRVTEILEENPKGNKSREVTADTSMEIKQNSVRSN 300

Query: 940 GS 945
           GS
Sbjct: 301 GS 302


>gb|EYU34893.1| hypothetical protein MIMGU_mgv1a005743mg [Mimulus guttatus]
          Length = 462

 Score =  360 bits (924), Expect = 5e-97
 Identities = 194/302 (64%), Positives = 229/302 (75%), Gaps = 2/302 (0%)
 Frame = +1

Query: 46  MAKVPPKHSRDQLRDVEGLLNNLQDWELSFKEKDKKLRADTLGRGKL-DNPSQSSYNDSS 222
           MAK P KHSRD            QDWELSFKEKDKK+R+D +G+ KL D   Q S N+  
Sbjct: 1   MAKTPSKHSRDLP----------QDWELSFKEKDKKMRSDAVGKAKLKDQLGQPSGNNVG 50

Query: 223 RLSDNPRVDGRKTRDKTSSAYNTNTVRQHDHLKKYEELSQLASTVSSKEGVVDANSEKEL 402
           R  D+ +V  ++T +KT S  N +TV+Q+DHLK+YE LS+L+S V S E  VDANSEKEL
Sbjct: 51  RPYDSAKVHRKQTMEKTPSYENPSTVKQYDHLKEYEALSRLSSAVPSTESFVDANSEKEL 110

Query: 403 GNEFFKQKKFNEAIDCYSRSIALSPTAVAYANRAMAYIKVKRFQEAENDCTEALNLDDRY 582
           GNEFFKQKKF EAIDCYSRSIALSP+AVAYANRAMAYIK++RFQEAENDCTEALNLDDRY
Sbjct: 111 GNEFFKQKKFTEAIDCYSRSIALSPSAVAYANRAMAYIKIRRFQEAENDCTEALNLDDRY 170

Query: 583 IKAYSRRSTARKELGKLKQSIDDVEFALRLEPQNQDIKKQHAECKALLEKEIMKKASGAL 762
           IKAYSRRSTARKELGKLK+S+DD EFALRLEPQNQ+IKKQ AE K+LLEK I+KK SGAL
Sbjct: 171 IKAYSRRSTARKELGKLKESMDDAEFALRLEPQNQEIKKQFAESKSLLEKAILKKVSGAL 230

Query: 763 AGPLEGAHKGKVEADKKKYALNSPAGRVAKFVEDDSKAN-IIEVSNQESVEHKGSTILSN 939
            G +EGA  GK E DK        +GRV + +E++ K N   EV+   S+E K +++ SN
Sbjct: 231 TGSVEGAQPGKSEVDKNNNVQKPLSGRVTEILEENPKGNKSREVTADTSMEIKQNSVRSN 290

Query: 940 GS 945
           GS
Sbjct: 291 GS 292


>ref|XP_006339932.1| PREDICTED: RNA polymerase II-associated protein 3-like isoform X1
           [Solanum tuberosum]
          Length = 468

 Score =  301 bits (772), Expect = 2e-79
 Identities = 165/291 (56%), Positives = 212/291 (72%), Gaps = 2/291 (0%)
 Frame = +1

Query: 46  MAKVPPKHSRDQLRDVEGLLNNLQDWELSFKEKDKKLRADTLGRGKLDNPSQSSYNDSSR 225
           MAKVP KHSRDQ +D++GLLNNLQDWELS K KDKK+++   G+  L    +  ++ +S 
Sbjct: 1   MAKVPSKHSRDQFQDMQGLLNNLQDWELSLKGKDKKMKSQAHGKETL----REDWSRTSE 56

Query: 226 LSDNPRVDGRKTRDKTSSAYNTNTVRQHDHLKKYEELSQLASTVSSKEGVVDANSEKELG 405
           L  +P+V+G +    TS     +    +++ K Y  +S L+S + S+E  ++ANSEKELG
Sbjct: 57  LLTSPQVNGTRVGKSTSIR---SAAGPYNYSKNYNPISHLSSELISEESNINANSEKELG 113

Query: 406 NEFFKQKKFNEAIDCYSRSIALSPTAVAYANRAMAYIKVKRFQEAENDCTEALNLDDRYI 585
           NE FKQKKFNEAIDCYSRSIALSPTAV+YANRAMAY+K+KRFQEAENDCTEALNLDDRYI
Sbjct: 114 NECFKQKKFNEAIDCYSRSIALSPTAVSYANRAMAYLKIKRFQEAENDCTEALNLDDRYI 173

Query: 586 KAYSRRSTARKELGKLKQSIDDVEFALRLEPQNQDIKKQHAECKALLEKEIMKKASGALA 765
           KAYSRRST+RKELGKLK+SI+D EFALRLEPQN +IKKQ+ E KAL EKEI K+ SGA  
Sbjct: 174 KAYSRRSTSRKELGKLKESIEDAEFALRLEPQNPEIKKQYGEVKALYEKEIRKRVSGATD 233

Query: 766 GPLEGAHK-GK-VEADKKKYALNSPAGRVAKFVEDDSKANIIEVSNQESVE 912
              + A K GK +++     +++S + ++A+     +K N  +V     VE
Sbjct: 234 VSAQRAQKSGKTIKSGPVIQSVSSSSQKMAEVWTIPAKENNRDVPGTAKVE 284


>ref|XP_006339933.1| PREDICTED: RNA polymerase II-associated protein 3-like isoform X2
           [Solanum tuberosum]
          Length = 467

 Score =  295 bits (755), Expect = 2e-77
 Identities = 164/291 (56%), Positives = 211/291 (72%), Gaps = 2/291 (0%)
 Frame = +1

Query: 46  MAKVPPKHSRDQLRDVEGLLNNLQDWELSFKEKDKKLRADTLGRGKLDNPSQSSYNDSSR 225
           MAKVP KHSRDQ +D++GLLNNLQDWELS K KDKK+++   G+  L    +  ++ +S 
Sbjct: 1   MAKVPSKHSRDQFQDMQGLLNNLQDWELSLKGKDKKMKSQAHGKETL----REDWSRTSE 56

Query: 226 LSDNPRVDGRKTRDKTSSAYNTNTVRQHDHLKKYEELSQLASTVSSKEGVVDANSEKELG 405
           L  +P+V+G +    TS     +    +++ K Y  +S L+S + S+E  ++ANSEKELG
Sbjct: 57  LLTSPQVNGTRVGKSTSIR---SAAGPYNYSKNYNPISHLSSELISEESNINANSEKELG 113

Query: 406 NEFFKQKKFNEAIDCYSRSIALSPTAVAYANRAMAYIKVKRFQEAENDCTEALNLDDRYI 585
           NE FKQKKFNEAIDCYSRSIALSPTAV+YANRAMAY+K+KRFQEAENDCTEALNLDDRYI
Sbjct: 114 NECFKQKKFNEAIDCYSRSIALSPTAVSYANRAMAYLKIKRFQEAENDCTEALNLDDRYI 173

Query: 586 KAYSRRSTARKELGKLKQSIDDVEFALRLEPQNQDIKKQHAECKALLEKEIMKKASGALA 765
           KAYSRRST+RKELGKLK+SI+D EFALRLEPQN +IKKQ+ E KAL EK I K+ SGA  
Sbjct: 174 KAYSRRSTSRKELGKLKESIEDAEFALRLEPQNPEIKKQYGEVKALYEK-IRKRVSGATD 232

Query: 766 GPLEGAHK-GK-VEADKKKYALNSPAGRVAKFVEDDSKANIIEVSNQESVE 912
              + A K GK +++     +++S + ++A+     +K N  +V     VE
Sbjct: 233 VSAQRAQKSGKTIKSGPVIQSVSSSSQKMAEVWTIPAKENNRDVPGTAKVE 283


>ref|XP_004248819.1| PREDICTED: RNA polymerase II-associated protein 3-like [Solanum
           lycopersicum]
          Length = 470

 Score =  291 bits (744), Expect = 3e-76
 Identities = 159/291 (54%), Positives = 208/291 (71%), Gaps = 2/291 (0%)
 Frame = +1

Query: 46  MAKVPPKHSRDQLRDVEGLLNNLQDWELSFKEKDKKLRADTLGRGKLDNPSQSSYNDSSR 225
           MA+VP  HSRDQ +D++GL NNLQDWEL+ K KDKK+++   G+  L    +  ++ +S 
Sbjct: 1   MARVPSNHSRDQFQDMQGLFNNLQDWELALKGKDKKMKSQAGGKETL----KEDWSRTSE 56

Query: 226 LSDNPRVDGRKTRDKTSSAYNTNTVRQHDHLKKYEELSQLASTVSSKEGVVDANSEKELG 405
              +P+ +G +   K++S    N    + + K Y  +S L+S + S+E  ++ANSEKELG
Sbjct: 57  PLTSPQANGTQQVGKSTSI--RNAAGPYSYSKNYNPISHLSSELISEESNINANSEKELG 114

Query: 406 NEFFKQKKFNEAIDCYSRSIALSPTAVAYANRAMAYIKVKRFQEAENDCTEALNLDDRYI 585
           NE FKQKKFNEAIDCYSRSIALSPTAV+YANRAMAY+K+KRFQEAENDCTEALNLDDRYI
Sbjct: 115 NECFKQKKFNEAIDCYSRSIALSPTAVSYANRAMAYLKIKRFQEAENDCTEALNLDDRYI 174

Query: 586 KAYSRRSTARKELGKLKQSIDDVEFALRLEPQNQDIKKQHAECKALLEKEIMKKASGALA 765
           KAYSRRST+RKELGKLK+SI+D EFAL LEP+N +IKKQ+ E KAL EKEI+K+ SGA  
Sbjct: 175 KAYSRRSTSRKELGKLKESIEDAEFALWLEPRNPEIKKQYGEVKALYEKEILKRVSGATD 234

Query: 766 GPLEGAHK-GK-VEADKKKYALNSPAGRVAKFVEDDSKANIIEVSNQESVE 912
              +G  K GK ++      +++S + +VA+     +K N  +V     VE
Sbjct: 235 VSAQGPQKSGKTIKIGPVIQSVSSSSQKVAEVRTIPAKENNRDVLGTAKVE 285


>ref|XP_006339935.1| PREDICTED: RNA polymerase II-associated protein 3-like isoform X4
           [Solanum tuberosum]
          Length = 419

 Score =  290 bits (743), Expect = 4e-76
 Identities = 150/237 (63%), Positives = 184/237 (77%)
 Frame = +1

Query: 46  MAKVPPKHSRDQLRDVEGLLNNLQDWELSFKEKDKKLRADTLGRGKLDNPSQSSYNDSSR 225
           MAKVP KHSRDQ +D++GLLNNLQDWELS K KDKK+++   G+  L    +  ++ +S 
Sbjct: 1   MAKVPSKHSRDQFQDMQGLLNNLQDWELSLKGKDKKMKSQAHGKETL----REDWSRTSE 56

Query: 226 LSDNPRVDGRKTRDKTSSAYNTNTVRQHDHLKKYEELSQLASTVSSKEGVVDANSEKELG 405
           L  +P+V+G +    TS     +    +++ K Y  +S L+S + S+E  ++ANSEKELG
Sbjct: 57  LLTSPQVNGTRVGKSTSIR---SAAGPYNYSKNYNPISHLSSELISEESNINANSEKELG 113

Query: 406 NEFFKQKKFNEAIDCYSRSIALSPTAVAYANRAMAYIKVKRFQEAENDCTEALNLDDRYI 585
           NE FKQKKFNEAIDCYSRSIALSPTAV+YANRAMAY+K+KRFQEAENDCTEALNLDDRYI
Sbjct: 114 NECFKQKKFNEAIDCYSRSIALSPTAVSYANRAMAYLKIKRFQEAENDCTEALNLDDRYI 173

Query: 586 KAYSRRSTARKELGKLKQSIDDVEFALRLEPQNQDIKKQHAECKALLEKEIMKKASG 756
           KAYSRRST+RKELGKLK+SI+D EFALRLEPQN +IKKQ+ E KAL EKE  +   G
Sbjct: 174 KAYSRRSTSRKELGKLKESIEDAEFALRLEPQNPEIKKQYGEVKALYEKENNRDVPG 230


>ref|XP_007031159.1| Tetratricopeptide repeat (TPR)-like superfamily protein, putative
           isoform 2 [Theobroma cacao] gi|508719764|gb|EOY11661.1|
           Tetratricopeptide repeat (TPR)-like superfamily protein,
           putative isoform 2 [Theobroma cacao]
          Length = 422

 Score =  286 bits (731), Expect = 1e-74
 Identities = 151/257 (58%), Positives = 190/257 (73%), Gaps = 1/257 (0%)
 Frame = +1

Query: 64  KHSRDQLRDVEGLLNNLQDWELSFKEKDKKLRADTLGRGKLDNPSQSSYNDSSRLSDNPR 243
           KHSRDQ  D +G LNNLQDWELS KEKDK ++              S  +D  +L  N +
Sbjct: 4   KHSRDQALDFQGFLNNLQDWELSLKEKDKIMK--------------SQASDKEQLKTNEK 49

Query: 244 VDGRKTRDKTSSAYNTNTVRQHDHLKKYEELSQLASTVSSKEGVVDANSEKELGNEFFKQ 423
             GR T   +    +T + RQ+D+L+ Y++ + L+S+  ++E + DA SEKELGNE+FKQ
Sbjct: 50  --GRPTGKSSLIDSSTTSSRQYDYLQNYDKFNSLSSSFVTEENMPDAASEKELGNEYFKQ 107

Query: 424 KKFNEAIDCYSRSIALSPTAVAYANRAMAYIKVKRFQEAENDCTEALNLDDRYIKAYSRR 603
           KKF EAIDCYSRSI LSPTAVA+ANRAMAY+K+K+FQEAE+DCTEALNLDDRYIKAYSRR
Sbjct: 108 KKFKEAIDCYSRSIGLSPTAVAHANRAMAYLKIKKFQEAEDDCTEALNLDDRYIKAYSRR 167

Query: 604 STARKELGKLKQSIDDVEFALRLEPQNQDIKKQHAECKALLEKEIMKKASGALAGPLEGA 783
           +TARKELGKLK+SI+D EFALRLEP NQ+IKKQHAE K+L EKEI++KASG L   ++ A
Sbjct: 168 ATARKELGKLKESIEDTEFALRLEPNNQEIKKQHAEFKSLYEKEILQKASGVLRKSMQEA 227

Query: 784 HK-GKVEADKKKYALNS 831
            + GK E  +    ++S
Sbjct: 228 QEVGKSETKENGLGMHS 244


>emb|CBI39598.3| unnamed protein product [Vitis vinifera]
          Length = 1097

 Score =  285 bits (730), Expect = 1e-74
 Identities = 158/303 (52%), Positives = 212/303 (69%), Gaps = 8/303 (2%)
 Frame = +1

Query: 40   STMAKVPPKHSRDQLRDVEGLLNNLQDWELSFKEKDKKLRADTLGRGKLDNPS-QSSYND 216
            S   + P KH+RDQ  D +G L +LQDWELS KEKDKK++A    +   D P+ + +   
Sbjct: 623  SMATRFPSKHARDQALDFQGFLTDLQDWELSLKEKDKKMKAQAEEK---DVPTARGNVKH 679

Query: 217  SSRLSDNPRVDGRKTRDKTSSAYNTNTVRQHDHLKKYEELSQLASTVSSKEGVVDANSEK 396
            SS+LS +P V  R  + ++ +       RQH++ + ++ +S+++S+  ++E + DA SEK
Sbjct: 680  SSKLSSSPGVSLRLGQSRSDT-------RQHEYSRNHDAISRISSSFMTEESLPDAASEK 732

Query: 397  ELGNEFFKQKKFNEAIDCYSRSIALSPTAVAYANRAMAYIKVKRFQEAENDCTEALNLDD 576
            ELGNE+FKQ+KF EAIDCYSRSIAL PTAVAYANRAMAYIK+KRF+EAE+DC EALNLDD
Sbjct: 733  ELGNEYFKQRKFKEAIDCYSRSIALLPTAVAYANRAMAYIKIKRFREAEDDCMEALNLDD 792

Query: 577  RYIKAYSRRSTARKELGKLKQSIDDVEFALRLEPQNQDIKKQHAECKALLEKEIMKKASG 756
            RYIKAYSRR+TARKELGK K++ +D EFALRLEPQNQ+IKKQ+AE K+L EKEI++KASG
Sbjct: 793  RYIKAYSRRATARKELGKFKEATEDAEFALRLEPQNQEIKKQYAEAKSLYEKEILQKASG 852

Query: 757  ALAGPLEGAHK-GK----VEADKK--KYALNSPAGRVAKFVEDDSKANIIEVSNQESVEH 915
            AL   ++G  K GK    V AD +  +   +S  G     ++D         ++ E  E+
Sbjct: 853  ALKSSVQGLQKVGKSVVEVNADTQGVRSISSSSQGAGEAAIQDRFMVPANTSTSMEETEN 912

Query: 916  KGS 924
            KG+
Sbjct: 913  KGT 915


>ref|XP_007031161.1| Tetratricopeptide repeat (TPR)-like superfamily protein, putative
           isoform 4 [Theobroma cacao] gi|508719766|gb|EOY11663.1|
           Tetratricopeptide repeat (TPR)-like superfamily protein,
           putative isoform 4 [Theobroma cacao]
          Length = 421

 Score =  285 bits (728), Expect = 2e-74
 Identities = 149/257 (57%), Positives = 188/257 (73%), Gaps = 1/257 (0%)
 Frame = +1

Query: 64  KHSRDQLRDVEGLLNNLQDWELSFKEKDKKLRADTLGRGKLDNPSQSSYNDSSRLSDNPR 243
           KHSRDQ  D +G LNNLQDWELS KEKDK +++    + +L N                 
Sbjct: 4   KHSRDQALDFQGFLNNLQDWELSLKEKDKIMKSQASDKEQLTNEK--------------- 48

Query: 244 VDGRKTRDKTSSAYNTNTVRQHDHLKKYEELSQLASTVSSKEGVVDANSEKELGNEFFKQ 423
             GR T   +    +T + RQ+D+L+ Y++ + L+S+  ++E + DA SEKELGNE+FKQ
Sbjct: 49  --GRPTGKSSLIDSSTTSSRQYDYLQNYDKFNSLSSSFVTEENMPDAASEKELGNEYFKQ 106

Query: 424 KKFNEAIDCYSRSIALSPTAVAYANRAMAYIKVKRFQEAENDCTEALNLDDRYIKAYSRR 603
           KKF EAIDCYSRSI LSPTAVA+ANRAMAY+K+K+FQEAE+DCTEALNLDDRYIKAYSRR
Sbjct: 107 KKFKEAIDCYSRSIGLSPTAVAHANRAMAYLKIKKFQEAEDDCTEALNLDDRYIKAYSRR 166

Query: 604 STARKELGKLKQSIDDVEFALRLEPQNQDIKKQHAECKALLEKEIMKKASGALAGPLEGA 783
           +TARKELGKLK+SI+D EFALRLEP NQ+IKKQHAE K+L EKEI++KASG L   ++ A
Sbjct: 167 ATARKELGKLKESIEDTEFALRLEPNNQEIKKQHAEFKSLYEKEILQKASGVLRKSMQEA 226

Query: 784 HK-GKVEADKKKYALNS 831
            + GK E  +    ++S
Sbjct: 227 QEVGKSETKENGLGMHS 243


>ref|XP_007031158.1| Tetratricopeptide repeat-like superfamily protein, putative isoform
           1 [Theobroma cacao] gi|508719763|gb|EOY11660.1|
           Tetratricopeptide repeat-like superfamily protein,
           putative isoform 1 [Theobroma cacao]
          Length = 468

 Score =  285 bits (728), Expect = 2e-74
 Identities = 149/257 (57%), Positives = 188/257 (73%), Gaps = 1/257 (0%)
 Frame = +1

Query: 64  KHSRDQLRDVEGLLNNLQDWELSFKEKDKKLRADTLGRGKLDNPSQSSYNDSSRLSDNPR 243
           KHSRDQ  D +G LNNLQDWELS KEKDK +++    + +L N                 
Sbjct: 4   KHSRDQALDFQGFLNNLQDWELSLKEKDKIMKSQASDKEQLTNEK--------------- 48

Query: 244 VDGRKTRDKTSSAYNTNTVRQHDHLKKYEELSQLASTVSSKEGVVDANSEKELGNEFFKQ 423
             GR T   +    +T + RQ+D+L+ Y++ + L+S+  ++E + DA SEKELGNE+FKQ
Sbjct: 49  --GRPTGKSSLIDSSTTSSRQYDYLQNYDKFNSLSSSFVTEENMPDAASEKELGNEYFKQ 106

Query: 424 KKFNEAIDCYSRSIALSPTAVAYANRAMAYIKVKRFQEAENDCTEALNLDDRYIKAYSRR 603
           KKF EAIDCYSRSI LSPTAVA+ANRAMAY+K+K+FQEAE+DCTEALNLDDRYIKAYSRR
Sbjct: 107 KKFKEAIDCYSRSIGLSPTAVAHANRAMAYLKIKKFQEAEDDCTEALNLDDRYIKAYSRR 166

Query: 604 STARKELGKLKQSIDDVEFALRLEPQNQDIKKQHAECKALLEKEIMKKASGALAGPLEGA 783
           +TARKELGKLK+SI+D EFALRLEP NQ+IKKQHAE K+L EKEI++KASG L   ++ A
Sbjct: 167 ATARKELGKLKESIEDTEFALRLEPNNQEIKKQHAEFKSLYEKEILQKASGVLRKSMQEA 226

Query: 784 HK-GKVEADKKKYALNS 831
            + GK E  +    ++S
Sbjct: 227 QEVGKSETKENGLGMHS 243


>ref|XP_002277910.2| PREDICTED: RNA polymerase II-associated protein 3-like [Vitis
           vinifera]
          Length = 474

 Score =  285 bits (728), Expect = 2e-74
 Identities = 157/299 (52%), Positives = 211/299 (70%), Gaps = 8/299 (2%)
 Frame = +1

Query: 52  KVPPKHSRDQLRDVEGLLNNLQDWELSFKEKDKKLRADTLGRGKLDNPS-QSSYNDSSRL 228
           + P KH+RDQ  D +G L +LQDWELS KEKDKK++A    +   D P+ + +   SS+L
Sbjct: 4   RFPSKHARDQALDFQGFLTDLQDWELSLKEKDKKMKAQAEEK---DVPTARGNVKHSSKL 60

Query: 229 SDNPRVDGRKTRDKTSSAYNTNTVRQHDHLKKYEELSQLASTVSSKEGVVDANSEKELGN 408
           S +P V  R  + ++ +       RQH++ + ++ +S+++S+  ++E + DA SEKELGN
Sbjct: 61  SSSPGVSLRLGQSRSDT-------RQHEYSRNHDAISRISSSFMTEESLPDAASEKELGN 113

Query: 409 EFFKQKKFNEAIDCYSRSIALSPTAVAYANRAMAYIKVKRFQEAENDCTEALNLDDRYIK 588
           E+FKQ+KF EAIDCYSRSIAL PTAVAYANRAMAYIK+KRF+EAE+DC EALNLDDRYIK
Sbjct: 114 EYFKQRKFKEAIDCYSRSIALLPTAVAYANRAMAYIKIKRFREAEDDCMEALNLDDRYIK 173

Query: 589 AYSRRSTARKELGKLKQSIDDVEFALRLEPQNQDIKKQHAECKALLEKEIMKKASGALAG 768
           AYSRR+TARKELGK K++ +D EFALRLEPQNQ+IKKQ+AE K+L EKEI++KASGAL  
Sbjct: 174 AYSRRATARKELGKFKEATEDAEFALRLEPQNQEIKKQYAEAKSLYEKEILQKASGALKS 233

Query: 769 PLEGAHK-GK----VEADKK--KYALNSPAGRVAKFVEDDSKANIIEVSNQESVEHKGS 924
            ++G  K GK    V AD +  +   +S  G     ++D         ++ E  E+KG+
Sbjct: 234 SVQGLQKVGKSVVEVNADTQGVRSISSSSQGAGEAAIQDRFMVPANTSTSMEETENKGT 292


>ref|XP_006339934.1| PREDICTED: RNA polymerase II-associated protein 3-like isoform X3
           [Solanum tuberosum]
          Length = 461

 Score =  283 bits (723), Expect = 9e-74
 Identities = 159/291 (54%), Positives = 206/291 (70%), Gaps = 2/291 (0%)
 Frame = +1

Query: 46  MAKVPPKHSRDQLRDVEGLLNNLQDWELSFKEKDKKLRADTLGRGKLDNPSQSSYNDSSR 225
           MAKVP KHSRDQ +D++GLLNNLQDWELS K KDKK+++   G+  L    +  ++ +S 
Sbjct: 1   MAKVPSKHSRDQFQDMQGLLNNLQDWELSLKGKDKKMKSQAHGKETL----REDWSRTSE 56

Query: 226 LSDNPRVDGRKTRDKTSSAYNTNTVRQHDHLKKYEELSQLASTVSSKEGVVDANSEKELG 405
           L  +P+V+G +    TS     +    +++ K Y  +S L+S + S+E  ++ANSEKEL 
Sbjct: 57  LLTSPQVNGTRVGKSTSIR---SAAGPYNYSKNYNPISHLSSELISEESNINANSEKEL- 112

Query: 406 NEFFKQKKFNEAIDCYSRSIALSPTAVAYANRAMAYIKVKRFQEAENDCTEALNLDDRYI 585
                 KKFNEAIDCYSRSIALSPTAV+YANRAMAY+K+KRFQEAENDCTEALNLDDRYI
Sbjct: 113 ------KKFNEAIDCYSRSIALSPTAVSYANRAMAYLKIKRFQEAENDCTEALNLDDRYI 166

Query: 586 KAYSRRSTARKELGKLKQSIDDVEFALRLEPQNQDIKKQHAECKALLEKEIMKKASGALA 765
           KAYSRRST+RKELGKLK+SI+D EFALRLEPQN +IKKQ+ E KAL EKEI K+ SGA  
Sbjct: 167 KAYSRRSTSRKELGKLKESIEDAEFALRLEPQNPEIKKQYGEVKALYEKEIRKRVSGATD 226

Query: 766 GPLEGAHK-GK-VEADKKKYALNSPAGRVAKFVEDDSKANIIEVSNQESVE 912
              + A K GK +++     +++S + ++A+     +K N  +V     VE
Sbjct: 227 VSAQRAQKSGKTIKSGPVIQSVSSSSQKMAEVWTIPAKENNRDVPGTAKVE 277


>ref|XP_004302236.1| PREDICTED: RNA polymerase II-associated protein 3-like [Fragaria
           vesca subsp. vesca]
          Length = 407

 Score =  276 bits (706), Expect = 9e-72
 Identities = 148/252 (58%), Positives = 184/252 (73%)
 Frame = +1

Query: 46  MAKVPPKHSRDQLRDVEGLLNNLQDWELSFKEKDKKLRADTLGRGKLDNPSQSSYNDSSR 225
           MA+ P KH RDQ  D +G L++LQDWELS K+KDKK+R           P Q        
Sbjct: 1   MARAPSKHGRDQALDFQGFLSDLQDWELSLKDKDKKMR-----------PQQ-------- 41

Query: 226 LSDNPRVDGRKTRDKTSSAYNTNTVRQHDHLKKYEELSQLASTVSSKEGVVDANSEKELG 405
               P  +  K+RD  +S+Y+TN          YE ++ ++S+ +S++G+ DA SEK+LG
Sbjct: 42  ----PNKEAPKSRDFGTSSYSTN----------YEPMNTVSSSFTSEDGLPDAASEKDLG 87

Query: 406 NEFFKQKKFNEAIDCYSRSIALSPTAVAYANRAMAYIKVKRFQEAENDCTEALNLDDRYI 585
           NE+FKQKKF EAIDCYSRSIAL+PTAVA+ANRAM+YIK+KRFQEAENDCTEALNLDDRYI
Sbjct: 88  NEYFKQKKFKEAIDCYSRSIALTPTAVAFANRAMSYIKIKRFQEAENDCTEALNLDDRYI 147

Query: 586 KAYSRRSTARKELGKLKQSIDDVEFALRLEPQNQDIKKQHAECKALLEKEIMKKASGALA 765
           KAYSRR+TARKELGKLK+SI+D EFALRLEP NQ+IKKQ+AE K+L EK I++K SGA+ 
Sbjct: 148 KAYSRRATARKELGKLKESIEDAEFALRLEPHNQEIKKQYAEAKSLYEKGILQKVSGAI- 206

Query: 766 GPLEGAHKGKVE 801
             +    K KVE
Sbjct: 207 -KISEQDKQKVE 217


>ref|XP_006382393.1| hypothetical protein POPTR_0005s01710g [Populus trichocarpa]
           gi|550337753|gb|ERP60190.1| hypothetical protein
           POPTR_0005s01710g [Populus trichocarpa]
          Length = 402

 Score =  275 bits (704), Expect = 1e-71
 Identities = 148/263 (56%), Positives = 195/263 (74%), Gaps = 2/263 (0%)
 Frame = +1

Query: 46  MAKVPPKHSRDQLRDVEGLLNNLQDWELSFKEKDKKLRADTLGRGKLDNPSQSSYNDSSR 225
           MA+VP KH RDQ  D +G LN+LQDWEL  K+ DKK++                    SR
Sbjct: 1   MARVPGKHGRDQALDFQGFLNDLQDWEL-LKDTDKKMKK------------------KSR 41

Query: 226 LSDNPRVDGRKTRDKTSSAYNTNTVR-QHDHLKKYEELSQLASTVSSKEGVVDANSEKEL 402
            SD    +  ++  KTS+A ++ +   Q+++ + +  +++L+S+ ++ E  VDA +EKEL
Sbjct: 42  ASDVKIGEDGRSEGKTSAADSSRSGSGQYEYSRNFGAINRLSSSFTTDEITVDATTEKEL 101

Query: 403 GNEFFKQKKFNEAIDCYSRSIALSPTAVAYANRAMAYIKVKRFQEAENDCTEALNLDDRY 582
           GNE+FKQKKFNEAI+CYSRSIALSPTAVAYANRAMAY+K+KRF+EAE+DCTEALNLDDRY
Sbjct: 102 GNEYFKQKKFNEAIECYSRSIALSPTAVAYANRAMAYLKIKRFREAEDDCTEALNLDDRY 161

Query: 583 IKAYSRRSTARKELGKLKQSIDDVEFALRLEPQNQDIKKQHAECKALLEKEIMKKASGAL 762
           IKAYSRR+TARKELGKLK+SI+D EFAL+LEP NQ+IKKQ+AE K+L EKEI++KASG L
Sbjct: 162 IKAYSRRATARKELGKLKESIEDSEFALKLEPNNQEIKKQYAEVKSLYEKEILQKASGTL 221

Query: 763 AGPLEGAHK-GKVEADKKKYALN 828
              L+G  + G+ EA    +A++
Sbjct: 222 RSSLQGTQQGGRSEASVNGHAVH 244


>ref|XP_006392426.1| hypothetical protein EUTSA_v10023436mg [Eutrema salsugineum]
           gi|557088932|gb|ESQ29712.1| hypothetical protein
           EUTSA_v10023436mg [Eutrema salsugineum]
          Length = 473

 Score =  265 bits (676), Expect = 3e-68
 Identities = 154/311 (49%), Positives = 201/311 (64%), Gaps = 14/311 (4%)
 Frame = +1

Query: 46  MAKVPPKHSRDQLRDVEGLLNNLQDWELSFKEKDKKLRADTLGRGKLDNPSQSSYNDSSR 225
           MA+ P KH RDQ +D +G LN+LQDWELS K+KDKK++ +      L NP          
Sbjct: 1   MARSPSKHGRDQTQDFQGFLNDLQDWELSLKDKDKKIKQN------LSNP---------- 44

Query: 226 LSDNPRVDGRKTRDKTSSAYNTNTVRQHDHLKKYEELSQLASTVSSKEGVVDANSEKELG 405
                          TS  +  +   Q+D +KKY  +S L+S+ +  E  +DANSEKE G
Sbjct: 45  ---------------TSEKFRPSGSGQYDFVKKYGPMSGLSSSFADDESPLDANSEKEQG 89

Query: 406 NEFFKQKKFNEAIDCYSRSIALSPTAVAYANRAMAYIKVKRFQEAENDCTEALNLDDRYI 585
           NE+FKQKKFNEAIDCYSRSIALSP AVA+ANRAMAY+K+KR++EAE DCTEALNLDDRY 
Sbjct: 90  NEYFKQKKFNEAIDCYSRSIALSPNAVAFANRAMAYLKIKRYREAEIDCTEALNLDDRYT 149

Query: 586 KAYSRRSTARKELGKLKQSIDDVEFALRLEPQNQDIKKQHAECKALLEKEIMKKASGALA 765
           KAYSRR+TARK LG +K++++D EFALRLEPQ+Q+++KQ+A+ K+LLEKEI++KASGA+ 
Sbjct: 150 KAYSRRATARKALGMVKEAMEDAEFALRLEPQSQELQKQYADIKSLLEKEIIEKASGAMQ 209

Query: 766 GPLEGAHKGKVEADKKKYALNS----PAGRVAK----FVEDDSKAN------IIEVSNQE 903
              +   K     DKK    N+    P   VAK     V   S++N      +IE  + E
Sbjct: 210 STAQELLK-TAGLDKKAKIPNTDTKKPVTLVAKTNGDMVRPVSRSNESSGKKLIESVDPE 268

Query: 904 SVEHKGSTILS 936
               +GS  +S
Sbjct: 269 EKHKEGSKKIS 279


>ref|XP_004144746.1| PREDICTED: RNA polymerase II-associated protein 3-like [Cucumis
           sativus] gi|449517788|ref|XP_004165926.1| PREDICTED: RNA
           polymerase II-associated protein 3-like [Cucumis
           sativus]
          Length = 458

 Score =  262 bits (670), Expect = 1e-67
 Identities = 136/238 (57%), Positives = 172/238 (72%)
 Frame = +1

Query: 46  MAKVPPKHSRDQLRDVEGLLNNLQDWELSFKEKDKKLRADTLGRGKLDNPSQSSYNDSSR 225
           MA    KH RDQL D +G LN+LQDWE+SFK KDKKL+   +G+ K D            
Sbjct: 1   MADSSAKHGRDQLLDFQGFLNDLQDWEVSFKGKDKKLKPQAIGKEKED------------ 48

Query: 226 LSDNPRVDGRKTRDKTSSAYNTNTVRQHDHLKKYEELSQLASTVSSKEGVVDANSEKELG 405
                    R+  +K S+A         D++K+Y+ +++L+    ++   VDA SEKE G
Sbjct: 49  ---------RRQTEKASAA---------DYMKQYDAVNRLSRNFQTEGSFVDAASEKEQG 90

Query: 406 NEFFKQKKFNEAIDCYSRSIALSPTAVAYANRAMAYIKVKRFQEAENDCTEALNLDDRYI 585
           NE+FKQKKF EAIDCYSRSIALSPTAVA+ANRAMAY+K++RFQEAE+DCTEALNLDDRYI
Sbjct: 91  NEYFKQKKFKEAIDCYSRSIALSPTAVAFANRAMAYLKIRRFQEAEDDCTEALNLDDRYI 150

Query: 586 KAYSRRSTARKELGKLKQSIDDVEFALRLEPQNQDIKKQHAECKALLEKEIMKKASGA 759
           KAYSRR+TARKELGK K++++D EFA RLEP NQ+IKKQHA+ +A + K I++KASGA
Sbjct: 151 KAYSRRATARKELGKAKEALEDAEFAQRLEPNNQEIKKQHADLRAFVGKAILEKASGA 208


>ref|XP_006433540.1| hypothetical protein CICLE_v10003914mg [Citrus clementina]
            gi|557535662|gb|ESR46780.1| hypothetical protein
            CICLE_v10003914mg [Citrus clementina]
          Length = 977

 Score =  260 bits (664), Expect = 6e-67
 Identities = 141/243 (58%), Positives = 179/243 (73%)
 Frame = +1

Query: 34   FRSTMAKVPPKHSRDQLRDVEGLLNNLQDWELSFKEKDKKLRADTLGRGKLDNPSQSSYN 213
            +++   K+PP H+RDQ  D +G LN+LQDW+LS  EKDKK++                + 
Sbjct: 533  YKAINEKMPP-HNRDQALDFQGFLNDLQDWDLSLHEKDKKMK----------------HK 575

Query: 214  DSSRLSDNPRVDGRKTRDKTSSAYNTNTVRQHDHLKKYEELSQLASTVSSKEGVVDANSE 393
             SS+  DN      K+ +K S + N+       + + Y+ +S+++S++ ++E   DA SE
Sbjct: 576  ASSK--DNLVSSSLKSGEKPSPSGNS-------YSRNYDPVSRISSSLMNEESTPDATSE 626

Query: 394  KELGNEFFKQKKFNEAIDCYSRSIALSPTAVAYANRAMAYIKVKRFQEAENDCTEALNLD 573
            KELGNE FKQKKF EAIDCYSRSIALSPTAVAYANRAMAY+K++RFQEAE+DCTEALNLD
Sbjct: 627  KELGNECFKQKKFKEAIDCYSRSIALSPTAVAYANRAMAYLKLRRFQEAEDDCTEALNLD 686

Query: 574  DRYIKAYSRRSTARKELGKLKQSIDDVEFALRLEPQNQDIKKQHAECKALLEKEIMKKAS 753
            DRYIKAYSRR+TARKELGKLK+SI+D EFALRLEPQNQ+IKKQ AE K+L EKE+ +KAS
Sbjct: 687  DRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKSLYEKEVFQKAS 746

Query: 754  GAL 762
              L
Sbjct: 747  KTL 749


>ref|XP_006472205.1| PREDICTED: RNA polymerase II-associated protein 3-like [Citrus
           sinensis]
          Length = 438

 Score =  257 bits (657), Expect = 4e-66
 Identities = 137/233 (58%), Positives = 168/233 (72%)
 Frame = +1

Query: 64  KHSRDQLRDVEGLLNNLQDWELSFKEKDKKLRADTLGRGKLDNPSQSSYNDSSRLSDNPR 243
           KH+RDQ  D +G LN+LQDW+LS  EKDKK++     +  L + S  S            
Sbjct: 3   KHNRDQALDFQGFLNDLQDWDLSLNEKDKKMKHKASSKDNLVSSSLKS------------ 50

Query: 244 VDGRKTRDKTSSAYNTNTVRQHDHLKKYEELSQLASTVSSKEGVVDANSEKELGNEFFKQ 423
               K    + ++Y+ N          Y+ +S ++S++ ++E   DA SEKELGNE FKQ
Sbjct: 51  ---AKKPSPSGNSYSRN----------YDPVSHISSSLMNEESTPDATSEKELGNECFKQ 97

Query: 424 KKFNEAIDCYSRSIALSPTAVAYANRAMAYIKVKRFQEAENDCTEALNLDDRYIKAYSRR 603
           KKF EAIDCYSRSIALSPTAVAYANRAMAY+K++RFQEAE+DCTEALNLDDRYIKAYSRR
Sbjct: 98  KKFKEAIDCYSRSIALSPTAVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRR 157

Query: 604 STARKELGKLKQSIDDVEFALRLEPQNQDIKKQHAECKALLEKEIMKKASGAL 762
           +TARKELGKLK+SI+D EFALRLEPQNQ+IKKQ AE K+L EKE+ +KAS  L
Sbjct: 158 ATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKSLYEKEVFQKASKTL 210


>ref|NP_176039.2| carboxylate clamp-tetratricopeptide repeat protein [Arabidopsis
           thaliana] gi|53828529|gb|AAU94374.1| At1g56440
           [Arabidopsis thaliana] gi|59958350|gb|AAX12885.1|
           At1g56440 [Arabidopsis thaliana]
           gi|110743110|dbj|BAE99447.1| hypothetical protein
           [Arabidopsis thaliana] gi|332195274|gb|AEE33395.1|
           carboxylate clamp-tetratricopeptide repeat [Arabidopsis
           thaliana]
          Length = 476

 Score =  257 bits (657), Expect = 4e-66
 Identities = 134/239 (56%), Positives = 175/239 (73%)
 Frame = +1

Query: 46  MAKVPPKHSRDQLRDVEGLLNNLQDWELSFKEKDKKLRADTLGRGKLDNPSQSSYNDSSR 225
           MA+ P KH RDQ +D +G  N+LQDWELS K+KDKK++           P+ SS      
Sbjct: 1   MARSPSKHGRDQTQDFQGFFNDLQDWELSLKDKDKKIK---------QQPANSS------ 45

Query: 226 LSDNPRVDGRKTRDKTSSAYNTNTVRQHDHLKKYEELSQLASTVSSKEGVVDANSEKELG 405
              NP          +S  +  +   ++D  KKY  +  L+S++   E ++D++SEKE G
Sbjct: 46  ---NP----------SSETFRPSGSGKYDFAKKYRSIRDLSSSLIG-ESLLDSSSEKEQG 91

Query: 406 NEFFKQKKFNEAIDCYSRSIALSPTAVAYANRAMAYIKVKRFQEAENDCTEALNLDDRYI 585
           NEFFKQKKFNEAIDCYSRSIALSP AV YANRAMAY+K+KR++EAE DCTEALNLDDRYI
Sbjct: 92  NEFFKQKKFNEAIDCYSRSIALSPNAVTYANRAMAYLKIKRYREAEVDCTEALNLDDRYI 151

Query: 586 KAYSRRSTARKELGKLKQSIDDVEFALRLEPQNQDIKKQHAECKALLEKEIMKKASGAL 762
           KAYSRR+TARKELG +K++ +D EFALRLEP++Q++KKQ+A+ K+LLEKEI++KA+GA+
Sbjct: 152 KAYSRRATARKELGMIKEAKEDAEFALRLEPESQELKKQYADIKSLLEKEIIEKATGAM 210


>ref|NP_001185250.1| carboxylate clamp-tetratricopeptide repeat protein [Arabidopsis
           thaliana] gi|332195275|gb|AEE33396.1| carboxylate
           clamp-tetratricopeptide repeat [Arabidopsis thaliana]
          Length = 494

 Score =  257 bits (657), Expect = 4e-66
 Identities = 134/239 (56%), Positives = 175/239 (73%)
 Frame = +1

Query: 46  MAKVPPKHSRDQLRDVEGLLNNLQDWELSFKEKDKKLRADTLGRGKLDNPSQSSYNDSSR 225
           MA+ P KH RDQ +D +G  N+LQDWELS K+KDKK++           P+ SS      
Sbjct: 1   MARSPSKHGRDQTQDFQGFFNDLQDWELSLKDKDKKIK---------QQPANSS------ 45

Query: 226 LSDNPRVDGRKTRDKTSSAYNTNTVRQHDHLKKYEELSQLASTVSSKEGVVDANSEKELG 405
              NP          +S  +  +   ++D  KKY  +  L+S++   E ++D++SEKE G
Sbjct: 46  ---NP----------SSETFRPSGSGKYDFAKKYRSIRDLSSSLIG-ESLLDSSSEKEQG 91

Query: 406 NEFFKQKKFNEAIDCYSRSIALSPTAVAYANRAMAYIKVKRFQEAENDCTEALNLDDRYI 585
           NEFFKQKKFNEAIDCYSRSIALSP AV YANRAMAY+K+KR++EAE DCTEALNLDDRYI
Sbjct: 92  NEFFKQKKFNEAIDCYSRSIALSPNAVTYANRAMAYLKIKRYREAEVDCTEALNLDDRYI 151

Query: 586 KAYSRRSTARKELGKLKQSIDDVEFALRLEPQNQDIKKQHAECKALLEKEIMKKASGAL 762
           KAYSRR+TARKELG +K++ +D EFALRLEP++Q++KKQ+A+ K+LLEKEI++KA+GA+
Sbjct: 152 KAYSRRATARKELGMIKEAKEDAEFALRLEPESQELKKQYADIKSLLEKEIIEKATGAM 210