BLASTX nr result
ID: Mentha28_contig00025560
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Mentha28_contig00025560
(1305 letters)
Database: ./nr
38,876,450 sequences; 13,856,398,315 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAA31653.1| polyprotein [Arabidopsis thaliana] 63 2e-07
emb|CAB75481.1| copia-like polyprotein [Arabidopsis thaliana] 62 4e-07
gb|AAD32759.1| putative retroelement pol polyprotein [Arabidopsi... 62 4e-07
gb|AAF19226.1|AC007505_2 Highly similar to Ta1-3 polyprotein [Ar... 62 6e-07
pir||S23319 hypothetical protein 2 - Arabidopsis thaliana retrot... 62 7e-07
emb|CAA20201.1| putative transposable element [Arabidopsis thali... 61 9e-07
emb|CAN61272.1| hypothetical protein VITISV_039063 [Vitis vinifera] 60 2e-06
gb|AAD36943.1|AF069441_3 putative polyprotein [Arabidopsis thali... 60 3e-06
gb|AAD23690.1| putative retroelement pol polyprotein [Arabidopsi... 59 4e-06
>emb|CAA31653.1| polyprotein [Arabidopsis thaliana]
Length = 1291
Score = 63.2 bits (152), Expect = 2e-07
Identities = 34/92 (36%), Positives = 54/92 (58%), Gaps = 7/92 (7%)
Frame = -2
Query: 413 LDSCEECILRKSKKLPYAMGKQSSSLVLDYVHYKGLWRLSRIAQ*VEEDTSSLYF----- 249
LD CE C++ K+KK+ + +GK +S VL YVH LW + + + + + YF
Sbjct: 479 LDFCENCVMGKAKKVSFNVGKHNSEDVLRYVH-ADLWGSTNVTPSL---SGNKYFLSIID 534
Query: 248 --SRKLWVYILKNKADAFIRFVEWYNEVENEK 159
+RK+W+Y L++K + F RF EW VEN++
Sbjct: 535 DKTRKVWLYFLRSKDETFDRFCEWKELVENQQ 566
>emb|CAB75481.1| copia-like polyprotein [Arabidopsis thaliana]
Length = 1363
Score = 62.4 bits (150), Expect = 4e-07
Identities = 34/102 (33%), Positives = 55/102 (53%), Gaps = 4/102 (3%)
Frame = -2
Query: 455 ITKKRNSEKSMPFKLDSCEECILRKSKKLPYAMGKQSSSLVLDYVHYKGLWRLSRIAQ*V 276
+ KK +K LD+CE+CI ++KK+ + + + + L+YVH LW + +
Sbjct: 463 LIKKGFLDKKKVSMLDTCEDCIYGRAKKIGFNLAQHDTKKKLEYVH-SDLWGAPTVPMSL 521
Query: 275 EEDTSSLYF----SRKLWVYILKNKADAFIRFVEWYNEVENE 162
+ F +RK+WVY LK K +AF +FV W + VEN+
Sbjct: 522 GNCQYFISFIDDYTRKVWVYFLKTKDEAFEKFVSWISLVENQ 563
>gb|AAD32759.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
Length = 1356
Score = 62.4 bits (150), Expect = 4e-07
Identities = 38/116 (32%), Positives = 59/116 (50%), Gaps = 13/116 (11%)
Frame = -2
Query: 470 HQRL*ITKKRNSE---------KSMPFKLDSCEECILRKSKKLPYAMGKQSSSLVLDYVH 318
HQRL ++N E K LD CE+CI K+K+ +++ + L+Y+H
Sbjct: 442 HQRLCHMSQKNMEILVRKGFLDKKKVSSLDVCEDCIYGKAKRKSFSLAHHDTKEKLEYIH 501
Query: 317 YKGLWRLSRIAQ*VEEDTSSLY----FSRKLWVYILKNKADAFIRFVEWYNEVENE 162
LW + + + + F+RK+WVY +K K +AF +FVEW N VEN+
Sbjct: 502 -SDLWGAPFVPLSLGKCQYFMSIIDDFTRKVWVYFMKTKDEAFEKFVEWVNLVENQ 556
>gb|AAF19226.1|AC007505_2 Highly similar to Ta1-3 polyprotein [Arabidopsis thaliana]
Length = 1356
Score = 62.0 bits (149), Expect = 6e-07
Identities = 33/92 (35%), Positives = 52/92 (56%), Gaps = 7/92 (7%)
Frame = -2
Query: 416 KLDSCEECILRKSKKLPYAMGKQSSSLVLDYVHYKGLWRLSRIAQ*VEEDTSSLYF---- 249
+L+ CE C++ KSKK+ + +GK +S L YVH LW + + + YF
Sbjct: 468 ELEFCEHCVMGKSKKVSFNVGKHTSEDALSYVH-ADLWGSPNVTPSI---SGKQYFLSII 523
Query: 248 ---SRKLWVYILKNKADAFIRFVEWYNEVENE 162
+RK+W+Y LK+K + F +F EW + VEN+
Sbjct: 524 DDKTRKVWLYFLKSKDETFDKFCEWKSLVENQ 555
>pir||S23319 hypothetical protein 2 - Arabidopsis thaliana retrotransposon Ta1-2
(strain Landsberg) (fragment) gi|16384|emb|CAA37924.1|
unnamed protein product [Arabidopsis thaliana]
Length = 1084
Score = 61.6 bits (148), Expect = 7e-07
Identities = 34/93 (36%), Positives = 54/93 (58%), Gaps = 7/93 (7%)
Frame = -2
Query: 416 KLDSCEECILRKSKKLPYAMGKQSSSLVLDYVHYKGLWRLSRIAQ*VEEDTSSLYF---- 249
+LD CE C++ K+KK+ + MGK +S VL YVH LW + + + + + YF
Sbjct: 378 ELDFCENCVMGKAKKVSFNMGKHNSEYVLSYVH-ADLWGSTNVTPSL---SGNKYFLSII 433
Query: 248 ---SRKLWVYILKNKADAFIRFVEWYNEVENEK 159
+RK+W+Y L++K + F RF E VEN++
Sbjct: 434 DDKTRKVWLYFLRSKDETFDRFCERKELVENQQ 466
>emb|CAA20201.1| putative transposable element [Arabidopsis thaliana]
gi|7268932|emb|CAB79135.1| putative transposable element
[Arabidopsis thaliana]
Length = 1308
Score = 61.2 bits (147), Expect = 9e-07
Identities = 35/98 (35%), Positives = 51/98 (52%)
Frame = -2
Query: 455 ITKKRNSEKSMPFKLDSCEECILRKSKKLPYAMGKQSSSLVLDYVHYKGLWRLSRIAQ*V 276
+ +K EK +L CE C++ KSKKL + +GK + VL Y+H LW +
Sbjct: 456 LAEKGLLEKKDIKELSFCENCVMGKSKKLSFNVGKHITDEVLGYIH-ADLWGKQYFLSII 514
Query: 275 EEDTSSLYFSRKLWVYILKNKADAFIRFVEWYNEVENE 162
++ SRK+W+ LK K + F RF EW VEN+
Sbjct: 515 DDK------SRKVWLMFLKTKDETFERFCEWKELVENQ 546
>emb|CAN61272.1| hypothetical protein VITISV_039063 [Vitis vinifera]
Length = 1643
Score = 60.5 bits (145), Expect = 2e-06
Identities = 34/90 (37%), Positives = 50/90 (55%), Gaps = 7/90 (7%)
Frame = -2
Query: 416 KLDSCEECILRKSKKLPYAMGKQSSSLVLDYVHYKGLWRLSRIAQ*VEEDTSSLY----- 252
KL CE C++ K +++ ++MG +++ VL+Y+H LW S VE + Y
Sbjct: 776 KLKFCETCVMGKQRRVKFSMGSHTTNGVLEYIH-SDLWGPSP----VESHSGCRYYVTFI 830
Query: 251 --FSRKLWVYILKNKADAFIRFVEWYNEVE 168
FSRK+WVY LK K + F +F EW VE
Sbjct: 831 DDFSRKVWVYFLKAKDEVFGKFKEWKTMVE 860
>gb|AAD36943.1|AF069441_3 putative polyprotein [Arabidopsis thaliana]
gi|7267195|emb|CAB77906.1| putative polyprotein
[Arabidopsis thaliana]
Length = 778
Score = 59.7 bits (143), Expect = 3e-06
Identities = 35/102 (34%), Positives = 54/102 (52%), Gaps = 4/102 (3%)
Frame = -2
Query: 455 ITKKRNSEKSMPFKLDSCEECILRKSKKLPYAMGKQSSSLVLDYVHYKGLWRLSRIAQ*V 276
+ KK +K LD+CE+CI K+KK+ + + + L+YVHY LW + +
Sbjct: 346 LVKKGFLDKKKVSMLDTCEDCIYGKAKKIGFNFAQHDTKEKLEYVHY-DLWGAPTMPMAL 404
Query: 275 EEDTSSLYF----SRKLWVYILKNKADAFIRFVEWYNEVENE 162
+ F +RK+ VY LK K +AF +FV W + VEN+
Sbjct: 405 GNCQYFISFIDDHTRKVCVYFLKTKDEAFEKFVSWISLVENQ 446
>gb|AAD23690.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
Length = 1333
Score = 59.3 bits (142), Expect = 4e-06
Identities = 34/102 (33%), Positives = 57/102 (55%), Gaps = 4/102 (3%)
Frame = -2
Query: 455 ITKKRNSEKSMPFKLDSCEECILRKSKKLPYAMGKQSSSLVLDYVHYKGLWRLSRIAQ*V 276
+ KK +K KL++CE+CI K+K++ + + + + L+YVH LW + +
Sbjct: 434 LLKKGLLDKKKVSKLETCEDCIYGKAKRIGFNLAQHDTREKLEYVH-SDLWGAPSVPFSL 492
Query: 275 EEDTSSLYF----SRKLWVYILKNKADAFIRFVEWYNEVENE 162
+ + F +RK+ +Y LK K +AF +FVEW N VEN+
Sbjct: 493 GKCQYFISFIDDYTRKVRIYFLKTKDEAFDKFVEWANLVENQ 534