BLASTX nr result

ID: Mentha28_contig00025560 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Mentha28_contig00025560
         (1305 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CAA31653.1| polyprotein [Arabidopsis thaliana]                     63   2e-07
emb|CAB75481.1| copia-like polyprotein [Arabidopsis thaliana]          62   4e-07
gb|AAD32759.1| putative retroelement pol polyprotein [Arabidopsi...    62   4e-07
gb|AAF19226.1|AC007505_2 Highly similar to Ta1-3 polyprotein [Ar...    62   6e-07
pir||S23319 hypothetical protein 2 - Arabidopsis thaliana retrot...    62   7e-07
emb|CAA20201.1| putative transposable element [Arabidopsis thali...    61   9e-07
emb|CAN61272.1| hypothetical protein VITISV_039063 [Vitis vinifera]    60   2e-06
gb|AAD36943.1|AF069441_3 putative polyprotein [Arabidopsis thali...    60   3e-06
gb|AAD23690.1| putative retroelement pol polyprotein [Arabidopsi...    59   4e-06

>emb|CAA31653.1| polyprotein [Arabidopsis thaliana]
          Length = 1291

 Score = 63.2 bits (152), Expect = 2e-07
 Identities = 34/92 (36%), Positives = 54/92 (58%), Gaps = 7/92 (7%)
 Frame = -2

Query: 413 LDSCEECILRKSKKLPYAMGKQSSSLVLDYVHYKGLWRLSRIAQ*VEEDTSSLYF----- 249
           LD CE C++ K+KK+ + +GK +S  VL YVH   LW  + +   +   + + YF     
Sbjct: 479 LDFCENCVMGKAKKVSFNVGKHNSEDVLRYVH-ADLWGSTNVTPSL---SGNKYFLSIID 534

Query: 248 --SRKLWVYILKNKADAFIRFVEWYNEVENEK 159
             +RK+W+Y L++K + F RF EW   VEN++
Sbjct: 535 DKTRKVWLYFLRSKDETFDRFCEWKELVENQQ 566


>emb|CAB75481.1| copia-like polyprotein [Arabidopsis thaliana]
          Length = 1363

 Score = 62.4 bits (150), Expect = 4e-07
 Identities = 34/102 (33%), Positives = 55/102 (53%), Gaps = 4/102 (3%)
 Frame = -2

Query: 455 ITKKRNSEKSMPFKLDSCEECILRKSKKLPYAMGKQSSSLVLDYVHYKGLWRLSRIAQ*V 276
           + KK   +K     LD+CE+CI  ++KK+ + + +  +   L+YVH   LW    +   +
Sbjct: 463 LIKKGFLDKKKVSMLDTCEDCIYGRAKKIGFNLAQHDTKKKLEYVH-SDLWGAPTVPMSL 521

Query: 275 EEDTSSLYF----SRKLWVYILKNKADAFIRFVEWYNEVENE 162
                 + F    +RK+WVY LK K +AF +FV W + VEN+
Sbjct: 522 GNCQYFISFIDDYTRKVWVYFLKTKDEAFEKFVSWISLVENQ 563


>gb|AAD32759.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
          Length = 1356

 Score = 62.4 bits (150), Expect = 4e-07
 Identities = 38/116 (32%), Positives = 59/116 (50%), Gaps = 13/116 (11%)
 Frame = -2

Query: 470 HQRL*ITKKRNSE---------KSMPFKLDSCEECILRKSKKLPYAMGKQSSSLVLDYVH 318
           HQRL    ++N E         K     LD CE+CI  K+K+  +++    +   L+Y+H
Sbjct: 442 HQRLCHMSQKNMEILVRKGFLDKKKVSSLDVCEDCIYGKAKRKSFSLAHHDTKEKLEYIH 501

Query: 317 YKGLWRLSRIAQ*VEEDTSSLY----FSRKLWVYILKNKADAFIRFVEWYNEVENE 162
              LW    +   + +    +     F+RK+WVY +K K +AF +FVEW N VEN+
Sbjct: 502 -SDLWGAPFVPLSLGKCQYFMSIIDDFTRKVWVYFMKTKDEAFEKFVEWVNLVENQ 556


>gb|AAF19226.1|AC007505_2 Highly similar to Ta1-3 polyprotein [Arabidopsis thaliana]
          Length = 1356

 Score = 62.0 bits (149), Expect = 6e-07
 Identities = 33/92 (35%), Positives = 52/92 (56%), Gaps = 7/92 (7%)
 Frame = -2

Query: 416 KLDSCEECILRKSKKLPYAMGKQSSSLVLDYVHYKGLWRLSRIAQ*VEEDTSSLYF---- 249
           +L+ CE C++ KSKK+ + +GK +S   L YVH   LW    +   +   +   YF    
Sbjct: 468 ELEFCEHCVMGKSKKVSFNVGKHTSEDALSYVH-ADLWGSPNVTPSI---SGKQYFLSII 523

Query: 248 ---SRKLWVYILKNKADAFIRFVEWYNEVENE 162
              +RK+W+Y LK+K + F +F EW + VEN+
Sbjct: 524 DDKTRKVWLYFLKSKDETFDKFCEWKSLVENQ 555


>pir||S23319 hypothetical protein 2 - Arabidopsis thaliana retrotransposon Ta1-2
           (strain Landsberg) (fragment) gi|16384|emb|CAA37924.1|
           unnamed protein product [Arabidopsis thaliana]
          Length = 1084

 Score = 61.6 bits (148), Expect = 7e-07
 Identities = 34/93 (36%), Positives = 54/93 (58%), Gaps = 7/93 (7%)
 Frame = -2

Query: 416 KLDSCEECILRKSKKLPYAMGKQSSSLVLDYVHYKGLWRLSRIAQ*VEEDTSSLYF---- 249
           +LD CE C++ K+KK+ + MGK +S  VL YVH   LW  + +   +   + + YF    
Sbjct: 378 ELDFCENCVMGKAKKVSFNMGKHNSEYVLSYVH-ADLWGSTNVTPSL---SGNKYFLSII 433

Query: 248 ---SRKLWVYILKNKADAFIRFVEWYNEVENEK 159
              +RK+W+Y L++K + F RF E    VEN++
Sbjct: 434 DDKTRKVWLYFLRSKDETFDRFCERKELVENQQ 466


>emb|CAA20201.1| putative transposable element [Arabidopsis thaliana]
           gi|7268932|emb|CAB79135.1| putative transposable element
           [Arabidopsis thaliana]
          Length = 1308

 Score = 61.2 bits (147), Expect = 9e-07
 Identities = 35/98 (35%), Positives = 51/98 (52%)
 Frame = -2

Query: 455 ITKKRNSEKSMPFKLDSCEECILRKSKKLPYAMGKQSSSLVLDYVHYKGLWRLSRIAQ*V 276
           + +K   EK    +L  CE C++ KSKKL + +GK  +  VL Y+H   LW        +
Sbjct: 456 LAEKGLLEKKDIKELSFCENCVMGKSKKLSFNVGKHITDEVLGYIH-ADLWGKQYFLSII 514

Query: 275 EEDTSSLYFSRKLWVYILKNKADAFIRFVEWYNEVENE 162
           ++       SRK+W+  LK K + F RF EW   VEN+
Sbjct: 515 DDK------SRKVWLMFLKTKDETFERFCEWKELVENQ 546


>emb|CAN61272.1| hypothetical protein VITISV_039063 [Vitis vinifera]
          Length = 1643

 Score = 60.5 bits (145), Expect = 2e-06
 Identities = 34/90 (37%), Positives = 50/90 (55%), Gaps = 7/90 (7%)
 Frame = -2

Query: 416  KLDSCEECILRKSKKLPYAMGKQSSSLVLDYVHYKGLWRLSRIAQ*VEEDTSSLY----- 252
            KL  CE C++ K +++ ++MG  +++ VL+Y+H   LW  S     VE  +   Y     
Sbjct: 776  KLKFCETCVMGKQRRVKFSMGSHTTNGVLEYIH-SDLWGPSP----VESHSGCRYYVTFI 830

Query: 251  --FSRKLWVYILKNKADAFIRFVEWYNEVE 168
              FSRK+WVY LK K + F +F EW   VE
Sbjct: 831  DDFSRKVWVYFLKAKDEVFGKFKEWKTMVE 860


>gb|AAD36943.1|AF069441_3 putative polyprotein [Arabidopsis thaliana]
           gi|7267195|emb|CAB77906.1| putative polyprotein
           [Arabidopsis thaliana]
          Length = 778

 Score = 59.7 bits (143), Expect = 3e-06
 Identities = 35/102 (34%), Positives = 54/102 (52%), Gaps = 4/102 (3%)
 Frame = -2

Query: 455 ITKKRNSEKSMPFKLDSCEECILRKSKKLPYAMGKQSSSLVLDYVHYKGLWRLSRIAQ*V 276
           + KK   +K     LD+CE+CI  K+KK+ +   +  +   L+YVHY  LW    +   +
Sbjct: 346 LVKKGFLDKKKVSMLDTCEDCIYGKAKKIGFNFAQHDTKEKLEYVHY-DLWGAPTMPMAL 404

Query: 275 EEDTSSLYF----SRKLWVYILKNKADAFIRFVEWYNEVENE 162
                 + F    +RK+ VY LK K +AF +FV W + VEN+
Sbjct: 405 GNCQYFISFIDDHTRKVCVYFLKTKDEAFEKFVSWISLVENQ 446


>gb|AAD23690.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
          Length = 1333

 Score = 59.3 bits (142), Expect = 4e-06
 Identities = 34/102 (33%), Positives = 57/102 (55%), Gaps = 4/102 (3%)
 Frame = -2

Query: 455 ITKKRNSEKSMPFKLDSCEECILRKSKKLPYAMGKQSSSLVLDYVHYKGLWRLSRIAQ*V 276
           + KK   +K    KL++CE+CI  K+K++ + + +  +   L+YVH   LW    +   +
Sbjct: 434 LLKKGLLDKKKVSKLETCEDCIYGKAKRIGFNLAQHDTREKLEYVH-SDLWGAPSVPFSL 492

Query: 275 EEDTSSLYF----SRKLWVYILKNKADAFIRFVEWYNEVENE 162
            +    + F    +RK+ +Y LK K +AF +FVEW N VEN+
Sbjct: 493 GKCQYFISFIDDYTRKVRIYFLKTKDEAFDKFVEWANLVENQ 534


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