BLASTX nr result
ID: Mentha28_contig00018293
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Mentha28_contig00018293
(904 letters)
Database: ./nr
38,876,450 sequences; 13,856,398,315 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_006345495.1| PREDICTED: RNA polymerase sigma factor sigD,... 195 2e-47
ref|XP_002272444.1| PREDICTED: RNA polymerase sigma factor rpoD-... 180 6e-43
emb|CBI24961.3| unnamed protein product [Vitis vinifera] 179 1e-42
ref|XP_004231123.1| PREDICTED: RNA polymerase sigma factor sigD,... 178 3e-42
ref|XP_006482924.1| PREDICTED: RNA polymerase sigma factor sigD,... 159 2e-36
ref|XP_006438958.1| hypothetical protein CICLE_v10033747mg [Citr... 159 2e-36
ref|XP_006379084.1| hypothetical protein POPTR_0009s06210g [Popu... 153 8e-35
ref|XP_006379082.1| hypothetical protein POPTR_0009s06210g [Popu... 153 8e-35
ref|XP_006379081.1| hypothetical protein POPTR_0009s06210g [Popu... 153 8e-35
ref|XP_006379080.1| hypothetical protein POPTR_0009s06210g [Popu... 153 8e-35
ref|XP_006851106.1| hypothetical protein AMTR_s00025p00248060 [A... 153 8e-35
ref|XP_004308689.1| PREDICTED: RNA polymerase sigma factor sigD,... 152 2e-34
ref|XP_007219201.1| hypothetical protein PRUPE_ppa017025mg [Prun... 152 2e-34
gb|EXB95293.1| RNA polymerase sigma factor rpoD [Morus notabilis] 148 3e-33
ref|XP_002517769.1| RNA polymerase sigma factor rpoD, putative [... 147 4e-33
ref|XP_006399871.1| hypothetical protein EUTSA_v10013654mg [Eutr... 147 7e-33
ref|XP_006379083.1| hypothetical protein POPTR_0009s06210g [Popu... 147 7e-33
dbj|BAJ34231.1| unnamed protein product [Thellungiella halophila] 147 7e-33
ref|NP_196877.1| sigma factor 4 [Arabidopsis thaliana] gi|752165... 143 1e-31
dbj|BAA78111.1| RNA polymerase sigma subunit SigD* [Arabidopsis ... 143 1e-31
>ref|XP_006345495.1| PREDICTED: RNA polymerase sigma factor sigD, chloroplastic-like
[Solanum tuberosum]
Length = 421
Score = 195 bits (496), Expect = 2e-47
Identities = 127/279 (45%), Positives = 166/279 (59%), Gaps = 9/279 (3%)
Frame = -2
Query: 810 MAVRSCSKHSPK--FPNISFSSSYSTKSHLCISNYATPLLHTPSNYSCSAVQQDTFLVPA 637
MA SCS HSP FP + S STK S +L+ P N S FL P
Sbjct: 1 MAAWSCSNHSPASLFP---YPSKLSTKPFFHYS-----ILYCPKNCS--------FLDPI 44
Query: 636 LQLAGAATAPPRRILEGQS---DVEWQHELCDEATIXXXXXXXXXXRTALKR---IYSXX 475
L A A +EG S D +++ + + KR YS
Sbjct: 45 HALTIEA-ANEAFTIEGSSLVFDTDFEESINKVEMFDEKIELALRRKNRRKRRRCCYSEC 103
Query: 474 XXXXDGLVSVNKKVGKSRF-MTAKEEARFSWYLKERARVEAVRRGLIAETEGDEVSSNEW 298
G +N K K+ F +T +EEA++SWYLKE AR+E +R+ ++ ET ++SS +
Sbjct: 104 LEMEKGDRILNSKPLKTGFYLTHEEEAKYSWYLKEEARIEILRK-MVEETSEIDLSSKQL 162
Query: 297 AKAAGISRHKLDKILWKGRESEKRITSCYHGLVVSIASSYLGKGLTLQDLAQEGSIGLLR 118
AKAAG+S +LDK+L +ES+K+I CY GLVVS+A+SY GKGL+LQDL QEGSIGLL
Sbjct: 163 AKAAGMSTQRLDKLLINAKESQKKIIQCYRGLVVSVAASYQGKGLSLQDLIQEGSIGLLH 222
Query: 117 GAIKFDPEKGYKLSTYAYWWIRQSITRAIANKSKIIRLP 1
GA KF+P+KGYKLSTYAYWWIRQ+I+RA+ANKS++IRLP
Sbjct: 223 GAKKFNPKKGYKLSTYAYWWIRQAISRAVANKSRVIRLP 261
>ref|XP_002272444.1| PREDICTED: RNA polymerase sigma factor rpoD-like [Vitis vinifera]
Length = 426
Score = 180 bits (457), Expect = 6e-43
Identities = 120/271 (44%), Positives = 151/271 (55%)
Frame = -2
Query: 813 AMAVRSCSKHSPKFPNISFSSSYSTKSHLCISNYATPLLHTPSNYSCSAVQQDTFLVPAL 634
A A+ CS S P +S S+ T L N+ PLL PS S + D V A
Sbjct: 4 ATAIAICSSPSQYSPALS---SFQTTPSLKTLNHP-PLLLPPSPSSTFVLVSDDDAVVAA 59
Query: 633 QLAGAATAPPRRILEGQSDVEWQHELCDEATIXXXXXXXXXXRTALKRIYSXXXXXXDGL 454
A A + ++ V E +E R ++ + + +
Sbjct: 60 AAAEAVALASAAVEAARAAVWAAGEAGEEE--GGGCRVVRVRRRGVEALGMVEKWDGEEV 117
Query: 453 VSVNKKVGKSRFMTAKEEARFSWYLKERARVEAVRRGLIAETEGDEVSSNEWAKAAGISR 274
V+ +S +T +EEA F LKE A +EA RR IAET E +SN+WA+A GI R
Sbjct: 118 HEVSFGAARSAVLTPREEAEFCLCLKEEAGLEAARRR-IAETREHEPTSNQWAEAVGIKR 176
Query: 273 HKLDKILWKGRESEKRITSCYHGLVVSIASSYLGKGLTLQDLAQEGSIGLLRGAIKFDPE 94
LDK+L GRES +RI Y LVVSIA+ Y GKGL+LQDL QEGSIGLLRGA +FDP+
Sbjct: 177 SSLDKMLCNGRESRERINQSYRRLVVSIAARYQGKGLSLQDLIQEGSIGLLRGAERFDPD 236
Query: 93 KGYKLSTYAYWWIRQSITRAIANKSKIIRLP 1
+GYKLSTY YWWIRQ+I RAIANKS+IIRLP
Sbjct: 237 RGYKLSTYVYWWIRQAIVRAIANKSRIIRLP 267
>emb|CBI24961.3| unnamed protein product [Vitis vinifera]
Length = 319
Score = 179 bits (454), Expect = 1e-42
Identities = 93/143 (65%), Positives = 109/143 (76%)
Frame = -2
Query: 429 KSRFMTAKEEARFSWYLKERARVEAVRRGLIAETEGDEVSSNEWAKAAGISRHKLDKILW 250
+S +T +EEA F LKE A +EA RR IAET E +SN+WA+A GI R LDK+L
Sbjct: 19 RSAVLTPREEAEFCLCLKEEAGLEAARRR-IAETREHEPTSNQWAEAVGIKRSSLDKMLC 77
Query: 249 KGRESEKRITSCYHGLVVSIASSYLGKGLTLQDLAQEGSIGLLRGAIKFDPEKGYKLSTY 70
GRES +RI Y LVVSIA+ Y GKGL+LQDL QEGSIGLLRGA +FDP++GYKLSTY
Sbjct: 78 NGRESRERINQSYRRLVVSIAARYQGKGLSLQDLIQEGSIGLLRGAERFDPDRGYKLSTY 137
Query: 69 AYWWIRQSITRAIANKSKIIRLP 1
YWWIRQ+I RAIANKS+IIRLP
Sbjct: 138 VYWWIRQAIVRAIANKSRIIRLP 160
>ref|XP_004231123.1| PREDICTED: RNA polymerase sigma factor sigD, chloroplastic-like
[Solanum lycopersicum]
Length = 442
Score = 178 bits (451), Expect = 3e-42
Identities = 126/300 (42%), Positives = 164/300 (54%), Gaps = 30/300 (10%)
Frame = -2
Query: 810 MAVRSCSKHSPK--FPNISFSSSYSTKSHLCISNYATPLLHTPSNYSCSAVQQDTFLVPA 637
MA SCS HSP FP + S ST+ +A +L+ P N S FL P
Sbjct: 1 MAAWSCSNHSPASLFP---YPSKLSTQPF-----FAYSILYCPKNCS--------FLDPI 44
Query: 636 LQLAGAATAPPRRILEGQS---DVEWQHELCDEATIXXXXXXXXXXRTALKR---IYSXX 475
L A A +EG S D +++ + KR YS
Sbjct: 45 HALTIEA-ANEAFTIEGSSLVFDTDFEESSDKVEMFDEKIELALRRKKRRKRRRCCYSEC 103
Query: 474 XXXXDGLVSVNKKVGKSRF-MTAKEEARFSWYLK---------------------ERARV 361
N K K+ F +T KEEA++SWYLK E AR+
Sbjct: 104 LEMEKEDNIFNLKPLKTGFYLTHKEEAKYSWYLKVNNNVYHRELDAGAESGWVKREEARI 163
Query: 360 EAVRRGLIAETEGDEVSSNEWAKAAGISRHKLDKILWKGRESEKRITSCYHGLVVSIASS 181
E +R+ ++ ET ++SS + AKAAG+S +LDK+L +ES+K+I CY GLVVS+A+S
Sbjct: 164 EILRK-MVEETSEIDLSSKQLAKAAGMSTRRLDKLLINAKESQKKIIQCYRGLVVSVAAS 222
Query: 180 YLGKGLTLQDLAQEGSIGLLRGAIKFDPEKGYKLSTYAYWWIRQSITRAIANKSKIIRLP 1
Y GKGL+LQDL QEGSIGLL GA KF+P+KGYKLSTYAYWWIRQ+I+RA+ANKS++IRLP
Sbjct: 223 YQGKGLSLQDLIQEGSIGLLHGAKKFNPKKGYKLSTYAYWWIRQAISRAVANKSRVIRLP 282
>ref|XP_006482924.1| PREDICTED: RNA polymerase sigma factor sigD, chloroplastic-like
[Citrus sinensis]
Length = 436
Score = 159 bits (401), Expect = 2e-36
Identities = 81/140 (57%), Positives = 104/140 (74%)
Frame = -2
Query: 420 FMTAKEEARFSWYLKERARVEAVRRGLIAETEGDEVSSNEWAKAAGISRHKLDKILWKGR 241
++T EEA + LKE A++E R+ +A+ E E S + AKA G+ + K+DKIL K R
Sbjct: 139 YLTPSEEAEICYSLKEGAKLEEARK-TVAQAEEHESISKQLAKATGMKQSKVDKILCKER 197
Query: 240 ESEKRITSCYHGLVVSIASSYLGKGLTLQDLAQEGSIGLLRGAIKFDPEKGYKLSTYAYW 61
ES++RI Y LVVSIA+ Y GKGL+L+DL QEGSIGLLRGA +F+PE+GYKLSTY YW
Sbjct: 198 ESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYW 257
Query: 60 WIRQSITRAIANKSKIIRLP 1
WI+Q+I R IANKS+ IRLP
Sbjct: 258 WIKQAIIRTIANKSRTIRLP 277
>ref|XP_006438958.1| hypothetical protein CICLE_v10033747mg [Citrus clementina]
gi|557541154|gb|ESR52198.1| hypothetical protein
CICLE_v10033747mg [Citrus clementina]
Length = 436
Score = 159 bits (401), Expect = 2e-36
Identities = 81/140 (57%), Positives = 104/140 (74%)
Frame = -2
Query: 420 FMTAKEEARFSWYLKERARVEAVRRGLIAETEGDEVSSNEWAKAAGISRHKLDKILWKGR 241
++T EEA + LKE A++E R+ +A+ E E S + AKA G+ + K+DKIL K R
Sbjct: 139 YLTPSEEAEICYSLKEGAKLEEARK-TVAQAEEHESISKQLAKATGMKQSKVDKILCKER 197
Query: 240 ESEKRITSCYHGLVVSIASSYLGKGLTLQDLAQEGSIGLLRGAIKFDPEKGYKLSTYAYW 61
ES++RI Y LVVSIA+ Y GKGL+L+DL QEGSIGLLRGA +F+PE+GYKLSTY YW
Sbjct: 198 ESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYW 257
Query: 60 WIRQSITRAIANKSKIIRLP 1
WI+Q+I R IANKS+ IRLP
Sbjct: 258 WIKQAIIRTIANKSRTIRLP 277
>ref|XP_006379084.1| hypothetical protein POPTR_0009s06210g [Populus trichocarpa]
gi|550331146|gb|ERP56881.1| hypothetical protein
POPTR_0009s06210g [Populus trichocarpa]
Length = 423
Score = 153 bits (387), Expect = 8e-35
Identities = 77/143 (53%), Positives = 105/143 (73%)
Frame = -2
Query: 429 KSRFMTAKEEARFSWYLKERARVEAVRRGLIAETEGDEVSSNEWAKAAGISRHKLDKILW 250
K +++ KEEA FS LK AR+EA RR I E + + +S + AKA + ++ +D +L
Sbjct: 122 KRGYLSPKEEAEFSMCLKHEARIEAARRR-IGEVQELDPTSKQLAKALRMEKNSVDNVLC 180
Query: 249 KGRESEKRITSCYHGLVVSIASSYLGKGLTLQDLAQEGSIGLLRGAIKFDPEKGYKLSTY 70
KGRES ++I Y LVVSIA+SY KGL+LQDL QEGSIGLLRGA +FDP++GYKLSTY
Sbjct: 181 KGRESREKIIRSYRRLVVSIATSYQDKGLSLQDLIQEGSIGLLRGAERFDPQRGYKLSTY 240
Query: 69 AYWWIRQSITRAIANKSKIIRLP 1
YWWI+++I AI+N ++++RLP
Sbjct: 241 VYWWIKEAILTAISNNTRMVRLP 263
>ref|XP_006379082.1| hypothetical protein POPTR_0009s06210g [Populus trichocarpa]
gi|550331144|gb|ERP56879.1| hypothetical protein
POPTR_0009s06210g [Populus trichocarpa]
Length = 284
Score = 153 bits (387), Expect = 8e-35
Identities = 77/143 (53%), Positives = 105/143 (73%)
Frame = -2
Query: 429 KSRFMTAKEEARFSWYLKERARVEAVRRGLIAETEGDEVSSNEWAKAAGISRHKLDKILW 250
K +++ KEEA FS LK AR+EA RR I E + + +S + AKA + ++ +D +L
Sbjct: 122 KRGYLSPKEEAEFSMCLKHEARIEAARRR-IGEVQELDPTSKQLAKALRMEKNSVDNVLC 180
Query: 249 KGRESEKRITSCYHGLVVSIASSYLGKGLTLQDLAQEGSIGLLRGAIKFDPEKGYKLSTY 70
KGRES ++I Y LVVSIA+SY KGL+LQDL QEGSIGLLRGA +FDP++GYKLSTY
Sbjct: 181 KGRESREKIIRSYRRLVVSIATSYQDKGLSLQDLIQEGSIGLLRGAERFDPQRGYKLSTY 240
Query: 69 AYWWIRQSITRAIANKSKIIRLP 1
YWWI+++I AI+N ++++RLP
Sbjct: 241 VYWWIKEAILTAISNNTRMVRLP 263
>ref|XP_006379081.1| hypothetical protein POPTR_0009s06210g [Populus trichocarpa]
gi|550331143|gb|ERP56878.1| hypothetical protein
POPTR_0009s06210g [Populus trichocarpa]
Length = 276
Score = 153 bits (387), Expect = 8e-35
Identities = 77/143 (53%), Positives = 105/143 (73%)
Frame = -2
Query: 429 KSRFMTAKEEARFSWYLKERARVEAVRRGLIAETEGDEVSSNEWAKAAGISRHKLDKILW 250
K +++ KEEA FS LK AR+EA RR I E + + +S + AKA + ++ +D +L
Sbjct: 122 KRGYLSPKEEAEFSMCLKHEARIEAARRR-IGEVQELDPTSKQLAKALRMEKNSVDNVLC 180
Query: 249 KGRESEKRITSCYHGLVVSIASSYLGKGLTLQDLAQEGSIGLLRGAIKFDPEKGYKLSTY 70
KGRES ++I Y LVVSIA+SY KGL+LQDL QEGSIGLLRGA +FDP++GYKLSTY
Sbjct: 181 KGRESREKIIRSYRRLVVSIATSYQDKGLSLQDLIQEGSIGLLRGAERFDPQRGYKLSTY 240
Query: 69 AYWWIRQSITRAIANKSKIIRLP 1
YWWI+++I AI+N ++++RLP
Sbjct: 241 VYWWIKEAILTAISNNTRMVRLP 263
>ref|XP_006379080.1| hypothetical protein POPTR_0009s06210g [Populus trichocarpa]
gi|550331142|gb|ERP56877.1| hypothetical protein
POPTR_0009s06210g [Populus trichocarpa]
Length = 331
Score = 153 bits (387), Expect = 8e-35
Identities = 77/143 (53%), Positives = 105/143 (73%)
Frame = -2
Query: 429 KSRFMTAKEEARFSWYLKERARVEAVRRGLIAETEGDEVSSNEWAKAAGISRHKLDKILW 250
K +++ KEEA FS LK AR+EA RR I E + + +S + AKA + ++ +D +L
Sbjct: 122 KRGYLSPKEEAEFSMCLKHEARIEAARRR-IGEVQELDPTSKQLAKALRMEKNSVDNVLC 180
Query: 249 KGRESEKRITSCYHGLVVSIASSYLGKGLTLQDLAQEGSIGLLRGAIKFDPEKGYKLSTY 70
KGRES ++I Y LVVSIA+SY KGL+LQDL QEGSIGLLRGA +FDP++GYKLSTY
Sbjct: 181 KGRESREKIIRSYRRLVVSIATSYQDKGLSLQDLIQEGSIGLLRGAERFDPQRGYKLSTY 240
Query: 69 AYWWIRQSITRAIANKSKIIRLP 1
YWWI+++I AI+N ++++RLP
Sbjct: 241 VYWWIKEAILTAISNNTRMVRLP 263
>ref|XP_006851106.1| hypothetical protein AMTR_s00025p00248060 [Amborella trichopoda]
gi|548854777|gb|ERN12687.1| hypothetical protein
AMTR_s00025p00248060 [Amborella trichopoda]
Length = 449
Score = 153 bits (387), Expect = 8e-35
Identities = 78/147 (53%), Positives = 102/147 (69%)
Frame = -2
Query: 441 KKVGKSRFMTAKEEARFSWYLKERARVEAVRRGLIAETEGDEVSSNEWAKAAGISRHKLD 262
K ++T +EEA FS L+E AR+E +RR L E G E S +WA+A G+ ++
Sbjct: 143 KSSSSEDYLTRREEAEFSLCLREGARLEGIRRKL-REKRGREPSRGQWAEAVGMRESSME 201
Query: 261 KILWKGRESEKRITSCYHGLVVSIASSYLGKGLTLQDLAQEGSIGLLRGAIKFDPEKGYK 82
+ L RE RIT+ Y LVVSIA+SY GKG++L DL QEGS+GLLRGA +FD +GYK
Sbjct: 202 RRLGIARECRNRITNSYRRLVVSIATSYPGKGMSLSDLIQEGSLGLLRGAERFDHRRGYK 261
Query: 81 LSTYAYWWIRQSITRAIANKSKIIRLP 1
LSTY YWWI+Q+I +AIA KS+I+RLP
Sbjct: 262 LSTYVYWWIKQAIIKAIATKSRIVRLP 288
>ref|XP_004308689.1| PREDICTED: RNA polymerase sigma factor sigD, chloroplastic-like
[Fragaria vesca subsp. vesca]
Length = 452
Score = 152 bits (384), Expect = 2e-34
Identities = 80/140 (57%), Positives = 100/140 (71%)
Frame = -2
Query: 420 FMTAKEEARFSWYLKERARVEAVRRGLIAETEGDEVSSNEWAKAAGISRHKLDKILWKGR 241
+++ +EEA LKE A++E+ R E + E +S + A A I +DK++ R
Sbjct: 155 YLSPREEADCCMSLKEGAKLES-ERTRFTEAQEHEPTSKQLANAMRIKMSSIDKVICNRR 213
Query: 240 ESEKRITSCYHGLVVSIASSYLGKGLTLQDLAQEGSIGLLRGAIKFDPEKGYKLSTYAYW 61
ES++RI Y GLVVS+ASSY GKGL+LQDL QEGSIGLLRGA KFDPE+G KLSTY YW
Sbjct: 214 ESQERIIKSYRGLVVSVASSYQGKGLSLQDLIQEGSIGLLRGAEKFDPERGLKLSTYVYW 273
Query: 60 WIRQSITRAIANKSKIIRLP 1
WIRQ+I RAI NKS+IIRLP
Sbjct: 274 WIRQAIIRAIENKSRIIRLP 293
>ref|XP_007219201.1| hypothetical protein PRUPE_ppa017025mg [Prunus persica]
gi|462415663|gb|EMJ20400.1| hypothetical protein
PRUPE_ppa017025mg [Prunus persica]
Length = 440
Score = 152 bits (383), Expect = 2e-34
Identities = 80/139 (57%), Positives = 101/139 (72%)
Frame = -2
Query: 417 MTAKEEARFSWYLKERARVEAVRRGLIAETEGDEVSSNEWAKAAGISRHKLDKILWKGRE 238
++ +EEA LKE AR+E+ R + E + E +S + AKA G+ +DK+L K RE
Sbjct: 144 LSPREEAECCLSLKEGARLES-ERFRVVEAQKHEPTSKQLAKAMGMKMRSIDKVLCKRRE 202
Query: 237 SEKRITSCYHGLVVSIASSYLGKGLTLQDLAQEGSIGLLRGAIKFDPEKGYKLSTYAYWW 58
S+++I Y GLVVS+ASSY GKGL+ QDL QEGSIGLLRGA KFD E+ +KLSTY YWW
Sbjct: 203 SQEKIIRSYRGLVVSVASSYQGKGLSFQDLIQEGSIGLLRGAEKFDHEREWKLSTYVYWW 262
Query: 57 IRQSITRAIANKSKIIRLP 1
IRQ+I RAI NKS+IIRLP
Sbjct: 263 IRQAIIRAIENKSRIIRLP 281
>gb|EXB95293.1| RNA polymerase sigma factor rpoD [Morus notabilis]
Length = 422
Score = 148 bits (374), Expect = 3e-33
Identities = 76/143 (53%), Positives = 101/143 (70%)
Frame = -2
Query: 429 KSRFMTAKEEARFSWYLKERARVEAVRRGLIAETEGDEVSSNEWAKAAGISRHKLDKILW 250
K +++ +EEA LKE A++EA R + +E E +S E AKA G+ +DK+L
Sbjct: 119 KLGYLSPREEAECCLILKEGAKLEATRLRM-TNSEDHEPTSKELAKAMGMEMRSIDKMLC 177
Query: 249 KGRESEKRITSCYHGLVVSIASSYLGKGLTLQDLAQEGSIGLLRGAIKFDPEKGYKLSTY 70
RES++RI+ Y LVVS+A+ Y GKGL+ DL QEGS+GLLRGA KFDP++G KLSTY
Sbjct: 178 DKRESQERISRSYRRLVVSVAAGYQGKGLSFPDLIQEGSVGLLRGAQKFDPQRGNKLSTY 237
Query: 69 AYWWIRQSITRAIANKSKIIRLP 1
YWWIRQ+I RAI NKS+++RLP
Sbjct: 238 VYWWIRQAIIRAIENKSRVVRLP 260
>ref|XP_002517769.1| RNA polymerase sigma factor rpoD, putative [Ricinus communis]
gi|223543041|gb|EEF44576.1| RNA polymerase sigma factor
rpoD, putative [Ricinus communis]
Length = 389
Score = 147 bits (372), Expect = 4e-33
Identities = 77/140 (55%), Positives = 104/140 (74%)
Frame = -2
Query: 420 FMTAKEEARFSWYLKERARVEAVRRGLIAETEGDEVSSNEWAKAAGISRHKLDKILWKGR 241
++++ EEA F LK+ ARVEA RR IAET+ E +S + A+A + + +DKIL KGR
Sbjct: 116 YLSSIEEAEFCLCLKDHARVEAARRR-IAETQEHEPTSKQLAEALRMRKKNVDKILCKGR 174
Query: 240 ESEKRITSCYHGLVVSIASSYLGKGLTLQDLAQEGSIGLLRGAIKFDPEKGYKLSTYAYW 61
+S +RIT Y LV+SIA+ Y GKGL+LQDL QEGSIGLLRGA +FDP++G KLSTY YW
Sbjct: 175 QSRERITGNYRRLVLSIANRYRGKGLSLQDLIQEGSIGLLRGAERFDPKRGNKLSTYVYW 234
Query: 60 WIRQSITRAIANKSKIIRLP 1
WI+++I +I+ S+I+R P
Sbjct: 235 WIKEAIITSISINSRIVRQP 254
>ref|XP_006399871.1| hypothetical protein EUTSA_v10013654mg [Eutrema salsugineum]
gi|557100961|gb|ESQ41324.1| hypothetical protein
EUTSA_v10013654mg [Eutrema salsugineum]
Length = 421
Score = 147 bits (370), Expect = 7e-33
Identities = 76/151 (50%), Positives = 104/151 (68%)
Frame = -2
Query: 453 VSVNKKVGKSRFMTAKEEARFSWYLKERARVEAVRRGLIAETEGDEVSSNEWAKAAGISR 274
+SV +S F++ EE + YLKE A++E V + E +E+ S + G +
Sbjct: 113 ISVPVAASRSGFLSRLEEVQLCLYLKEGAKLENVGTSV----EENEIVSVLLSSGKGKKK 168
Query: 273 HKLDKILWKGRESEKRITSCYHGLVVSIASSYLGKGLTLQDLAQEGSIGLLRGAIKFDPE 94
++IL + RE+ ++IT CY LVVSIA+ Y GKGL LQDL QEGSIGLLRGA +FDPE
Sbjct: 169 RSANEILCRRREAREKITRCYRRLVVSIATGYQGKGLNLQDLIQEGSIGLLRGAERFDPE 228
Query: 93 KGYKLSTYAYWWIRQSITRAIANKSKIIRLP 1
+GYKLSTY YWWI+Q+I RAIA+KS++++LP
Sbjct: 229 RGYKLSTYVYWWIKQAILRAIAHKSRLVKLP 259
>ref|XP_006379083.1| hypothetical protein POPTR_0009s06210g [Populus trichocarpa]
gi|550331145|gb|ERP56880.1| hypothetical protein
POPTR_0009s06210g [Populus trichocarpa]
Length = 419
Score = 147 bits (370), Expect = 7e-33
Identities = 75/141 (53%), Positives = 102/141 (72%)
Frame = -2
Query: 429 KSRFMTAKEEARFSWYLKERARVEAVRRGLIAETEGDEVSSNEWAKAAGISRHKLDKILW 250
K +++ KEEA FS LK AR+EA RR I E + + +S + AKA + ++ +D +L
Sbjct: 122 KRGYLSPKEEAEFSMCLKHEARIEAARRR-IGEVQELDPTSKQLAKALRMEKNSVDNVLC 180
Query: 249 KGRESEKRITSCYHGLVVSIASSYLGKGLTLQDLAQEGSIGLLRGAIKFDPEKGYKLSTY 70
KGRES ++I Y LVVSIA+SY KGL+LQDL QEGSIGLLRGA +FDP++GYKLSTY
Sbjct: 181 KGRESREKIIRSYRRLVVSIATSYQDKGLSLQDLIQEGSIGLLRGAERFDPQRGYKLSTY 240
Query: 69 AYWWIRQSITRAIANKSKIIR 7
YWWI+++I AI+N +++ R
Sbjct: 241 VYWWIKEAILTAISNNTRMRR 261
>dbj|BAJ34231.1| unnamed protein product [Thellungiella halophila]
Length = 269
Score = 147 bits (370), Expect = 7e-33
Identities = 76/151 (50%), Positives = 104/151 (68%)
Frame = -2
Query: 453 VSVNKKVGKSRFMTAKEEARFSWYLKERARVEAVRRGLIAETEGDEVSSNEWAKAAGISR 274
+SV +S F++ EE + YLKE A++E V + E +E+ S + G +
Sbjct: 113 ISVPVAASRSGFLSRLEEVQLCLYLKEGAKLENVGTSV----EENEIVSVLLSSGKGKKK 168
Query: 273 HKLDKILWKGRESEKRITSCYHGLVVSIASSYLGKGLTLQDLAQEGSIGLLRGAIKFDPE 94
++IL + RE+ ++IT CY LVVSIA+ Y GKGL LQDL QEGSIGLLRGA +FDPE
Sbjct: 169 RSANEILCRRREAREKITRCYRRLVVSIATGYQGKGLNLQDLIQEGSIGLLRGAERFDPE 228
Query: 93 KGYKLSTYAYWWIRQSITRAIANKSKIIRLP 1
+GYKLSTY YWWI+Q+I RAIA+KS++++LP
Sbjct: 229 RGYKLSTYVYWWIKQAILRAIAHKSRLVKLP 259
>ref|NP_196877.1| sigma factor 4 [Arabidopsis thaliana]
gi|75216509|sp|Q9ZSL6.1|SIGD_ARATH RecName: Full=RNA
polymerase sigma factor sigD, chloroplastic; Short=Sigma
factor D; Short=Sigma-D; AltName: Full=RNA polymerase
sigma factor sig4; Short=Atsig4; Short=Sigma factor 4;
Flags: Precursor gi|3983260|gb|AAC97954.1| sigma-like
factor [Arabidopsis thaliana] gi|4972296|dbj|BAA78110.1|
RNA polymerase sigma subunit SigD [Arabidopsis thaliana]
gi|9758039|dbj|BAB08700.1| sigma-like factor
[Arabidopsis thaliana] gi|332004550|gb|AED91933.1| sigma
factor 4 [Arabidopsis thaliana]
Length = 419
Score = 143 bits (360), Expect = 1e-31
Identities = 76/147 (51%), Positives = 102/147 (69%), Gaps = 2/147 (1%)
Frame = -2
Query: 435 VGKSR--FMTAKEEARFSWYLKERARVEAVRRGLIAETEGDEVSSNEWAKAAGISRHKLD 262
VG SR F++ EE + YLKE A++E L E +E+ S A G + +
Sbjct: 115 VGASRSGFLSRLEEVQLCLYLKEGAKLE----NLGTSVEENEMVSVLLASGRGKKKRSAN 170
Query: 261 KILWKGRESEKRITSCYHGLVVSIASSYLGKGLTLQDLAQEGSIGLLRGAIKFDPEKGYK 82
+IL + +E+ ++IT CY LVVSIA+ Y GKGL LQDL QEGSIGLLRGA +FDP++GYK
Sbjct: 171 EILCRRKEAREKITRCYRRLVVSIATGYQGKGLNLQDLIQEGSIGLLRGAERFDPDRGYK 230
Query: 81 LSTYAYWWIRQSITRAIANKSKIIRLP 1
LSTY YWWI+Q+I RAIA+KS++++LP
Sbjct: 231 LSTYVYWWIKQAILRAIAHKSRLVKLP 257
>dbj|BAA78111.1| RNA polymerase sigma subunit SigD* [Arabidopsis thaliana]
gi|16649075|gb|AAL24389.1| sigma-like factor
[Arabidopsis thaliana] gi|21387209|gb|AAM48008.1|
sigma-like factor [Arabidopsis thaliana]
Length = 267
Score = 143 bits (360), Expect = 1e-31
Identities = 76/147 (51%), Positives = 102/147 (69%), Gaps = 2/147 (1%)
Frame = -2
Query: 435 VGKSR--FMTAKEEARFSWYLKERARVEAVRRGLIAETEGDEVSSNEWAKAAGISRHKLD 262
VG SR F++ EE + YLKE A++E L E +E+ S A G + +
Sbjct: 115 VGASRSGFLSRLEEVQLCLYLKEGAKLE----NLGTSVEENEMVSVLLASGRGKKKRSAN 170
Query: 261 KILWKGRESEKRITSCYHGLVVSIASSYLGKGLTLQDLAQEGSIGLLRGAIKFDPEKGYK 82
+IL + +E+ ++IT CY LVVSIA+ Y GKGL LQDL QEGSIGLLRGA +FDP++GYK
Sbjct: 171 EILCRRKEAREKITRCYRRLVVSIATGYQGKGLNLQDLIQEGSIGLLRGAERFDPDRGYK 230
Query: 81 LSTYAYWWIRQSITRAIANKSKIIRLP 1
LSTY YWWI+Q+I RAIA+KS++++LP
Sbjct: 231 LSTYVYWWIKQAILRAIAHKSRLVKLP 257