BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Mentha28_contig00013218
         (3808 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|EYU42342.1| hypothetical protein MIMGU_mgv1a000091mg [Mimulus...  2251   0.0  
ref|XP_004232527.1| PREDICTED: DNA-directed RNA polymerase II su...  2212   0.0  
ref|XP_006340787.1| PREDICTED: DNA-directed RNA polymerase II su...  2212   0.0  
ref|XP_002285900.1| PREDICTED: DNA-directed RNA polymerase II su...  2195   0.0  
ref|XP_006828844.1| hypothetical protein AMTR_s00001p00152770 [A...  2174   0.0  
gb|EXC35292.1| DNA-directed RNA polymerase II subunit rpb1 [Moru...  2153   0.0  
ref|XP_007203058.1| hypothetical protein PRUPE_ppa000093mg [Prun...  2153   0.0  
ref|XP_006659128.1| PREDICTED: DNA-directed RNA polymerase II su...  2148   0.0  
ref|XP_004169177.1| PREDICTED: DNA-directed RNA polymerase II su...  2145   0.0  
ref|XP_004146161.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed...  2145   0.0  
ref|XP_006467031.1| PREDICTED: DNA-directed RNA polymerase II su...  2143   0.0  
ref|XP_006467030.1| PREDICTED: DNA-directed RNA polymerase II su...  2143   0.0  
ref|XP_006467029.1| PREDICTED: DNA-directed RNA polymerase II su...  2143   0.0  
ref|XP_006467027.1| PREDICTED: DNA-directed RNA polymerase II su...  2143   0.0  
ref|XP_006425357.1| hypothetical protein CICLE_v10024686mg [Citr...  2143   0.0  
ref|XP_004287766.1| PREDICTED: DNA-directed RNA polymerase II su...  2142   0.0  
ref|XP_004972809.1| PREDICTED: DNA-directed RNA polymerase II su...  2139   0.0  
ref|XP_004972810.1| PREDICTED: DNA-directed RNA polymerase II su...  2137   0.0  
ref|XP_006590737.1| PREDICTED: DNA-directed RNA polymerase II su...  2136   0.0  
ref|XP_004512182.1| PREDICTED: DNA-directed RNA polymerase II su...  2134   0.0  

>gb|EYU42342.1| hypothetical protein MIMGU_mgv1a000091mg [Mimulus guttatus]
          Length = 1842

 Score = 2251 bits (5834), Expect = 0.0
 Identities = 1120/1179 (94%), Positives = 1151/1179 (97%), Gaps = 2/1179 (0%)
 Frame = +3

Query: 3    ARTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYI 182
            ARTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVE GPHPPPGKTGAKYI
Sbjct: 359  ARTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVENGPHPPPGKTGAKYI 418

Query: 183  IRDDGQRLDLRYLKKSSDQHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPY 362
            IRDDGQRLDLRYLKKSSDQHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPY
Sbjct: 419  IRDDGQRLDLRYLKKSSDQHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPY 478

Query: 363  STFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQANRPVMGIVQ 542
            STFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQANRPVMGIVQ
Sbjct: 479  STFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQANRPVMGIVQ 538

Query: 543  DTLLGCRKITKRDTFIDKDVFMNILMWWEDFDGKVPAPTILKPKPLWTGKQVFNLIIPRQ 722
            DTLLGCRKITKRDTFI+KDVFMNILMWWEDFDGKVPAP ILKP+PLWTGKQVFNLIIP+Q
Sbjct: 539  DTLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPAPAILKPRPLWTGKQVFNLIIPKQ 598

Query: 723  INLLRYSAWHQEGEKGFITPGDTQVRIEKGELLSGTLCKKTLGSSSGSLIHVIWEEVGPD 902
            INLLRYSAWHQE EKGFITPGDTQVRIEKGELL+GTLCKK LG+S+GSLIHVIWEEVGPD
Sbjct: 599  INLLRYSAWHQETEKGFITPGDTQVRIEKGELLTGTLCKKALGTSTGSLIHVIWEEVGPD 658

Query: 903  AARKFLGHTQWLVNYWLLQNAFSMGIGDTIADHDTMTKISETINKAKNEVNELIRAAQEK 1082
            AARKFLGHTQWLVNYWLLQNAFSMGIGDTIAD  TM KI+ETI+ AKNEV ELIRAAQEK
Sbjct: 659  AARKFLGHTQWLVNYWLLQNAFSMGIGDTIADAATMEKINETISNAKNEVKELIRAAQEK 718

Query: 1083 QLEAEPGRTMMESFENRVNQVLNKARDDAGSSAQKSLAESNNLKAMVTAGSKGSFINISQ 1262
            QLE EPGRTMMESFENRVNQVLNKARDDAGSSAQKSL+ESNNLKAMVTAGSKGSFINISQ
Sbjct: 719  QLEPEPGRTMMESFENRVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQ 778

Query: 1263 MTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLSPQEFFFHAMGG 1442
            MTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGL+PQEFFFHAMGG
Sbjct: 779  MTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGG 838

Query: 1443 REGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIES 1622
            REGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIES
Sbjct: 839  REGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIES 898

Query: 1623 QPLESLKLKRMDFNDMYKYEIDQPNWNPNYMLPEAVEDLKTIREIRSVFDAEVQKLEADR 1802
            QPLESLKLK+ DFNDMYKYEID  NWNPNYMLPEAVEDLKTIREIRSVFDAEV KLE DR
Sbjct: 899  QPLESLKLKKSDFNDMYKYEIDNSNWNPNYMLPEAVEDLKTIREIRSVFDAEVTKLEVDR 958

Query: 1803 FQLGTEIATTGDNSWPLPVNIKRLVLNAQKTFRVDFRRPSDMHPMEIVEAVDKLQERLKV 1982
            FQLGTEIATTGDNSWPLPVNIKRLVLNAQKTF+VDFRRPSDMHPMEIVEAVDKLQERLKV
Sbjct: 959  FQLGTEIATTGDNSWPLPVNIKRLVLNAQKTFKVDFRRPSDMHPMEIVEAVDKLQERLKV 1018

Query: 1983 VVGDDYLSLEAQKNATLFFNILLRSALASKRVLKEYRLTREAFDWVVGEIESRFLQSLVA 2162
            VVGDDYLS EAQKNATLFFNILLRSALASKRVLKEYRLTREAF+WV+GEIESRFLQSLVA
Sbjct: 1019 VVGDDYLSTEAQKNATLFFNILLRSALASKRVLKEYRLTREAFEWVIGEIESRFLQSLVA 1078

Query: 2163 AGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVF 2342
            AGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSV+
Sbjct: 1079 AGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVY 1138

Query: 2343 LKSGVSKTKEKAKNVQCALEYTTLRSVTQATEVWYDPDPMSTIIEEDVEFVKSYYEMPDE 2522
            LK  VSKTKEKAKNVQCALEYTTLRSVTQATEVWYDPDPMSTIIEEDVEFVKSYYEMPDE
Sbjct: 1139 LKPDVSKTKEKAKNVQCALEYTTLRSVTQATEVWYDPDPMSTIIEEDVEFVKSYYEMPDE 1198

Query: 2523 EIDPDKISPWLLRIELNREMMVDKKLSMADIAEKINLEFDDDLTCIFNDDNAEKLILRIR 2702
            EIDPDKISPWLLRIELNREMMVDKKLSMADIAEKIN EF DDLTCIFNDDNAEKLILRIR
Sbjct: 1199 EIDPDKISPWLLRIELNREMMVDKKLSMADIAEKINTEFSDDLTCIFNDDNAEKLILRIR 1258

Query: 2703 IMNDEAPKGEMNDESSEDDVFLKKIEGNMLTEMALRGIPDINKVFIKNGKVNKFDENEGF 2882
            IMN++APKGE+ DES+EDDVFLKKIEGNMLTEMALRGIPDINKVFIKN K+NKFDEN+GF
Sbjct: 1259 IMNEQAPKGELADESAEDDVFLKKIEGNMLTEMALRGIPDINKVFIKNSKLNKFDENDGF 1318

Query: 2883 KAENEWMLDTEGVNLLAVICHEDVDARRTTSNHLIEVIEVLGIEAVRKALLDELRVVISF 3062
            KAENEWMLDTEGVNLLAV+CHE+VD RRTTSNHLIEVIEVLGIEAVR++LLDELRVVISF
Sbjct: 1319 KAENEWMLDTEGVNLLAVMCHEEVDVRRTTSNHLIEVIEVLGIEAVRRSLLDELRVVISF 1378

Query: 3063 DGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAET 3242
            DGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAV+AET
Sbjct: 1379 DGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVFAET 1438

Query: 3243 DYLRGVTENIMLGQLAPIGTGDCALYMNEEMLKQAIEIPLPSYMEGGLEFGMTPGRSP-M 3419
            D LRGVTENIMLGQLAPIGTGDCAL +NE+MLKQAIEIPLPSYMEGGLEFGMTPGRSP  
Sbjct: 1439 DCLRGVTENIMLGQLAPIGTGDCALLLNEQMLKQAIEIPLPSYMEGGLEFGMTPGRSPHS 1498

Query: 3420 GTPYHDGMMSPNYML-SPNLRLSPVSDAQFSPYVGGVAF 3533
            GTPYHDGMMSPNY+L SPNLRLSPV+DAQFSPYVGG+AF
Sbjct: 1499 GTPYHDGMMSPNYLLMSPNLRLSPVTDAQFSPYVGGMAF 1537


>ref|XP_004232527.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1 [Solanum
            lycopersicum]
          Length = 1846

 Score = 2212 bits (5733), Expect = 0.0
 Identities = 1094/1178 (92%), Positives = 1144/1178 (97%), Gaps = 1/1178 (0%)
 Frame = +3

Query: 3    ARTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYI 182
            ARTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYI
Sbjct: 359  ARTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYI 418

Query: 183  IRDDGQRLDLRYLKKSSDQHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPY 362
            IRDDGQRLDLRYLKKSSDQHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPY
Sbjct: 419  IRDDGQRLDLRYLKKSSDQHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPY 478

Query: 363  STFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQANRPVMGIVQ 542
            STFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQANRPVMGIVQ
Sbjct: 479  STFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQANRPVMGIVQ 538

Query: 543  DTLLGCRKITKRDTFIDKDVFMNILMWWEDFDGKVPAPTILKPKPLWTGKQVFNLIIPRQ 722
            DTLLGCRK+TKRDTFI+KDVFMNILMWWEDFDGKVPAP ILKP+PLWTGKQVFNLIIP+Q
Sbjct: 539  DTLLGCRKVTKRDTFIEKDVFMNILMWWEDFDGKVPAPVILKPRPLWTGKQVFNLIIPKQ 598

Query: 723  INLLRYSAWHQEGEKGFITPGDTQVRIEKGELLSGTLCKKTLGSSSGSLIHVIWEEVGPD 902
            INLLRYSAWH + EKG+ITPGDTQVRIEKGELLSGTLCKKTLG+S+GSLIHVIWEEVGPD
Sbjct: 599  INLLRYSAWHNDSEKGYITPGDTQVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPD 658

Query: 903  AARKFLGHTQWLVNYWLLQNAFSMGIGDTIADHDTMTKISETINKAKNEVNELIRAAQEK 1082
            AARKFLGHTQWLVNYWLLQ AFS+GIGDTIAD  TM KI+ETI+ AK +V ELI+AAQEK
Sbjct: 659  AARKFLGHTQWLVNYWLLQQAFSIGIGDTIADASTMEKINETISNAKAKVKELIKAAQEK 718

Query: 1083 QLEAEPGRTMMESFENRVNQVLNKARDDAGSSAQKSLAESNNLKAMVTAGSKGSFINISQ 1262
             LEAEPGRTMMESFENRVNQVLNKARDDAGSSA+KSL+ESNNLKAMVTAGSKGSFINISQ
Sbjct: 719  LLEAEPGRTMMESFENRVNQVLNKARDDAGSSAEKSLSESNNLKAMVTAGSKGSFINISQ 778

Query: 1263 MTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLSPQEFFFHAMGG 1442
            MTACVGQQNVEGKRIPFGF+DRTLPHFTKDDYGPESRGFVENSYLRGL+PQEFFFHAMGG
Sbjct: 779  MTACVGQQNVEGKRIPFGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGG 838

Query: 1443 REGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIES 1622
            REGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMD+VWIE+
Sbjct: 839  REGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIET 898

Query: 1623 QPLESLKLKRMDFNDMYKYEIDQPNWNPNYMLPEAVEDLKTIREIRSVFDAEVQKLEADR 1802
            Q L+SLK K+  F+DMY YEID PNWNP+YMLPEAVEDLK IREIRSVFDAEVQKLEADR
Sbjct: 899  QKLDSLKAKKGTFDDMYAYEIDDPNWNPSYMLPEAVEDLKGIREIRSVFDAEVQKLEADR 958

Query: 1803 FQLGTEIATTGDNSWPLPVNIKRLVLNAQKTFRVDFRRPSDMHPMEIVEAVDKLQERLKV 1982
             QLGTEIA TGDNSWPLPVNI+RLVLNAQKTF++DFRRPSDMHPMEIVEAVDKLQERLKV
Sbjct: 959  HQLGTEIAVTGDNSWPLPVNIQRLVLNAQKTFKIDFRRPSDMHPMEIVEAVDKLQERLKV 1018

Query: 1983 VVGDDYLSLEAQKNATLFFNILLRSALASKRVLKEYRLTREAFDWVVGEIESRFLQSLVA 2162
            V GDDYLS+EAQKNATLFFNILLRSALASKRVLKEYRL+REAF+WVVGEIESRFLQSLVA
Sbjct: 1019 VPGDDYLSMEAQKNATLFFNILLRSALASKRVLKEYRLSREAFEWVVGEIESRFLQSLVA 1078

Query: 2163 AGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVF 2342
             GEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSV+
Sbjct: 1079 PGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVY 1138

Query: 2343 LKSGVSKTKEKAKNVQCALEYTTLRSVTQATEVWYDPDPMSTIIEEDVEFVKSYYEMPDE 2522
            LK  V KTKE+AK VQCALEYTTLRSVTQATEVWYDPDPMST+IEEDVEFVKSYYEMPDE
Sbjct: 1139 LKPEVGKTKERAKTVQCALEYTTLRSVTQATEVWYDPDPMSTLIEEDVEFVKSYYEMPDE 1198

Query: 2523 EIDPDKISPWLLRIELNREMMVDKKLSMADIAEKINLEFDDDLTCIFNDDNAEKLILRIR 2702
            EIDPDKISPWLLRIELNREMMVDKKLSMADIAEKINLEFDDDLTCIFNDDNAEKLILRIR
Sbjct: 1199 EIDPDKISPWLLRIELNREMMVDKKLSMADIAEKINLEFDDDLTCIFNDDNAEKLILRIR 1258

Query: 2703 IMNDEAPKGEMNDESSEDDVFLKKIEGNMLTEMALRGIPDINKVFIKNGKVNKFDENEGF 2882
            IMNDEAPKGE+ DES+EDDVFLKKIE NMLTEMALRGIPDINKVFIKN KV KFD+NEGF
Sbjct: 1259 IMNDEAPKGEL-DESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKNSKVQKFDDNEGF 1317

Query: 2883 KAENEWMLDTEGVNLLAVICHEDVDARRTTSNHLIEVIEVLGIEAVRKALLDELRVVISF 3062
            KAENEWMLDTEGVNLLAV+ HEDVDA RTTSNHLIEVIEVLGIEAVR++LLDELRVVISF
Sbjct: 1318 KAENEWMLDTEGVNLLAVMTHEDVDASRTTSNHLIEVIEVLGIEAVRRSLLDELRVVISF 1377

Query: 3063 DGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAET 3242
            DGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAV+AE+
Sbjct: 1378 DGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVFAES 1437

Query: 3243 DYLRGVTENIMLGQLAPIGTGDCALYMNEEMLKQAIEIPLPSYMEGGLEFGMTPGRSPM- 3419
            D+LRGVTENIMLGQLAPIGTG C+LY+NEEMLKQAIEIPLPSYMEGGLEFGMTPGRSP+ 
Sbjct: 1438 DHLRGVTENIMLGQLAPIGTGGCSLYLNEEMLKQAIEIPLPSYMEGGLEFGMTPGRSPIS 1497

Query: 3420 GTPYHDGMMSPNYMLSPNLRLSPVSDAQFSPYVGGVAF 3533
            GTPYHDGMMSPNY+LSPN+R+SP++DAQFSPYVGG+AF
Sbjct: 1498 GTPYHDGMMSPNYLLSPNMRMSPITDAQFSPYVGGMAF 1535


>ref|XP_006340787.1| PREDICTED: DNA-directed RNA polymerase II subunit 1-like [Solanum
            tuberosum]
          Length = 1839

 Score = 2212 bits (5731), Expect = 0.0
 Identities = 1093/1178 (92%), Positives = 1144/1178 (97%), Gaps = 1/1178 (0%)
 Frame = +3

Query: 3    ARTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYI 182
            ARTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYI
Sbjct: 359  ARTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYI 418

Query: 183  IRDDGQRLDLRYLKKSSDQHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPY 362
            IRDDGQRLDLRYLKKSSDQHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPY
Sbjct: 419  IRDDGQRLDLRYLKKSSDQHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPY 478

Query: 363  STFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQANRPVMGIVQ 542
            STFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQANRPVMGIVQ
Sbjct: 479  STFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQANRPVMGIVQ 538

Query: 543  DTLLGCRKITKRDTFIDKDVFMNILMWWEDFDGKVPAPTILKPKPLWTGKQVFNLIIPRQ 722
            DTLLGCRK+TKRDTFI+KDVFMNILMWWEDFDGKVPAP ILKP+PLWTGKQVFNLIIP+Q
Sbjct: 539  DTLLGCRKVTKRDTFIEKDVFMNILMWWEDFDGKVPAPVILKPRPLWTGKQVFNLIIPKQ 598

Query: 723  INLLRYSAWHQEGEKGFITPGDTQVRIEKGELLSGTLCKKTLGSSSGSLIHVIWEEVGPD 902
            INLLRYSAWH + EKG+ITPGDTQVRIEKGELLSGTLCKKTLG+S+GSLIHVIWEEVGPD
Sbjct: 599  INLLRYSAWHNDSEKGYITPGDTQVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPD 658

Query: 903  AARKFLGHTQWLVNYWLLQNAFSMGIGDTIADHDTMTKISETINKAKNEVNELIRAAQEK 1082
            AARKFLGHTQWLVNYWLLQ AFS+GIGDTIAD  TM KI+ETI+ AK +V ELI+AAQEK
Sbjct: 659  AARKFLGHTQWLVNYWLLQQAFSIGIGDTIADASTMEKINETISNAKAKVKELIKAAQEK 718

Query: 1083 QLEAEPGRTMMESFENRVNQVLNKARDDAGSSAQKSLAESNNLKAMVTAGSKGSFINISQ 1262
             LEAEPGRTMMESFENRVNQVLNKARDDAGSSA+KSL+ESNNLKAMVTAGSKGSFINISQ
Sbjct: 719  LLEAEPGRTMMESFENRVNQVLNKARDDAGSSAEKSLSESNNLKAMVTAGSKGSFINISQ 778

Query: 1263 MTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLSPQEFFFHAMGG 1442
            MTACVGQQNVEGKRIPFGF+DRTLPHFTKDDYGPESRGFVENSYLRGL+PQEFFFHAMGG
Sbjct: 779  MTACVGQQNVEGKRIPFGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGG 838

Query: 1443 REGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIES 1622
            REGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMD+VWIE+
Sbjct: 839  REGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIET 898

Query: 1623 QPLESLKLKRMDFNDMYKYEIDQPNWNPNYMLPEAVEDLKTIREIRSVFDAEVQKLEADR 1802
            Q L+SLK K+  F+DMY YEID PNWNP+YMLPEAVEDLK IREIRSVFDAEVQKLEADR
Sbjct: 899  QKLDSLKAKKGTFDDMYAYEIDDPNWNPSYMLPEAVEDLKGIREIRSVFDAEVQKLEADR 958

Query: 1803 FQLGTEIATTGDNSWPLPVNIKRLVLNAQKTFRVDFRRPSDMHPMEIVEAVDKLQERLKV 1982
             QLGTEIA TGDNSWPLPVNI+RLVLNAQKTF++DFRRPSDMHPMEIVEAVDKLQERLKV
Sbjct: 959  HQLGTEIAVTGDNSWPLPVNIQRLVLNAQKTFKIDFRRPSDMHPMEIVEAVDKLQERLKV 1018

Query: 1983 VVGDDYLSLEAQKNATLFFNILLRSALASKRVLKEYRLTREAFDWVVGEIESRFLQSLVA 2162
            V GDDYLS+EAQKNATLFFNILLRSALASKRVLKEYRL+REAF+WVVGEIESRFLQSLVA
Sbjct: 1019 VPGDDYLSMEAQKNATLFFNILLRSALASKRVLKEYRLSREAFEWVVGEIESRFLQSLVA 1078

Query: 2163 AGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVF 2342
             GEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSV+
Sbjct: 1079 PGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVY 1138

Query: 2343 LKSGVSKTKEKAKNVQCALEYTTLRSVTQATEVWYDPDPMSTIIEEDVEFVKSYYEMPDE 2522
            LK  V KTKE+AK VQCALEYTTLRSVTQATEVWYDPDPMST+IEEDVEFVKSYYEMPDE
Sbjct: 1139 LKPEVGKTKERAKTVQCALEYTTLRSVTQATEVWYDPDPMSTLIEEDVEFVKSYYEMPDE 1198

Query: 2523 EIDPDKISPWLLRIELNREMMVDKKLSMADIAEKINLEFDDDLTCIFNDDNAEKLILRIR 2702
            EIDPDKISPWLLRIELNREMMVDKKLSMADIAEKIN+EFDDDLTCIFNDDNAEKLILRIR
Sbjct: 1199 EIDPDKISPWLLRIELNREMMVDKKLSMADIAEKINVEFDDDLTCIFNDDNAEKLILRIR 1258

Query: 2703 IMNDEAPKGEMNDESSEDDVFLKKIEGNMLTEMALRGIPDINKVFIKNGKVNKFDENEGF 2882
            IMNDEAPKGE+ DES+EDDVFLKKIE NMLTEMALRGIPDINKVFIKN KV KFD+NEGF
Sbjct: 1259 IMNDEAPKGEL-DESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKNSKVQKFDDNEGF 1317

Query: 2883 KAENEWMLDTEGVNLLAVICHEDVDARRTTSNHLIEVIEVLGIEAVRKALLDELRVVISF 3062
            KAENEWMLDTEGVNLLAV+ HEDVDA RTTSNHLIEVIEVLGIEAVR++LLDELRVVISF
Sbjct: 1318 KAENEWMLDTEGVNLLAVMTHEDVDASRTTSNHLIEVIEVLGIEAVRRSLLDELRVVISF 1377

Query: 3063 DGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAET 3242
            DGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAV+AE+
Sbjct: 1378 DGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVFAES 1437

Query: 3243 DYLRGVTENIMLGQLAPIGTGDCALYMNEEMLKQAIEIPLPSYMEGGLEFGMTPGRSPM- 3419
            D+LRGVTENIMLGQLAPIGTG C+LY+NEEMLKQAIEIPLPSYMEGGLEFGMTPGRSP+ 
Sbjct: 1438 DHLRGVTENIMLGQLAPIGTGSCSLYLNEEMLKQAIEIPLPSYMEGGLEFGMTPGRSPIS 1497

Query: 3420 GTPYHDGMMSPNYMLSPNLRLSPVSDAQFSPYVGGVAF 3533
            GTPYHDGMMSPNY+LSPN+R+SP++DAQFSPYVGG+AF
Sbjct: 1498 GTPYHDGMMSPNYLLSPNMRMSPITDAQFSPYVGGMAF 1535


>ref|XP_002285900.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like [Vitis
            vinifera]
          Length = 1848

 Score = 2195 bits (5687), Expect = 0.0
 Identities = 1081/1178 (91%), Positives = 1141/1178 (96%), Gaps = 1/1178 (0%)
 Frame = +3

Query: 3    ARTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYI 182
            ARTVITPDPTINID+LGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYI
Sbjct: 359  ARTVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYI 418

Query: 183  IRDDGQRLDLRYLKKSSDQHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPY 362
            IR+DGQRLDLRYLKKSSD HLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPY
Sbjct: 419  IREDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPY 478

Query: 363  STFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQANRPVMGIVQ 542
            STFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQ+NRPVMGIVQ
Sbjct: 479  STFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQ 538

Query: 543  DTLLGCRKITKRDTFIDKDVFMNILMWWEDFDGKVPAPTILKPKPLWTGKQVFNLIIPRQ 722
            DTLLGCRKITKRDTFI+KDVFMNILMWWEDFDGK+PAP ILKP+PLWTGKQVFNLIIP+Q
Sbjct: 539  DTLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKIPAPAILKPRPLWTGKQVFNLIIPKQ 598

Query: 723  INLLRYSAWHQEGEKGFITPGDTQVRIEKGELLSGTLCKKTLGSSSGSLIHVIWEEVGPD 902
            INLLR SAWH E E GFITPGDTQVRIEKGELL+GTLCKKTLG+S+GSLIHVIWEEVGPD
Sbjct: 599  INLLRTSAWHSESETGFITPGDTQVRIEKGELLAGTLCKKTLGTSTGSLIHVIWEEVGPD 658

Query: 903  AARKFLGHTQWLVNYWLLQNAFSMGIGDTIADHDTMTKISETINKAKNEVNELIRAAQEK 1082
            AARKFLGHTQWLVNYWLLQN FS+GIGDTIAD  TM KI+ETI+KAKNEV ELIRAAQE+
Sbjct: 659  AARKFLGHTQWLVNYWLLQNGFSIGIGDTIADAATMEKINETISKAKNEVKELIRAAQER 718

Query: 1083 QLEAEPGRTMMESFENRVNQVLNKARDDAGSSAQKSLAESNNLKAMVTAGSKGSFINISQ 1262
            QLEAEPGRTMMESFENRVNQVLNKARDDAGSSAQKSL+ESNNLKAMVTAGSKGSFINISQ
Sbjct: 719  QLEAEPGRTMMESFENRVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQ 778

Query: 1263 MTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLSPQEFFFHAMGG 1442
            MTACVGQQNVEGKRIP+GF+DRTLPHFTKDDYGPESRGFVENSYLRGL+PQEFFFHAMGG
Sbjct: 779  MTACVGQQNVEGKRIPYGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGG 838

Query: 1443 REGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIES 1622
            REGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIE+
Sbjct: 839  REGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIET 898

Query: 1623 QPLESLKLKRMDFNDMYKYEIDQPNWNPNYMLPEAVEDLKTIREIRSVFDAEVQKLEADR 1802
            Q L+SLK+K+ +F+ ++KYEID  NWNP+YMLPE VEDLKTIRE R+VFDAEVQKLEADR
Sbjct: 899  QKLDSLKMKKGEFDRVFKYEIDDENWNPSYMLPEHVEDLKTIREFRNVFDAEVQKLEADR 958

Query: 1803 FQLGTEIATTGDNSWPLPVNIKRLVLNAQKTFRVDFRRPSDMHPMEIVEAVDKLQERLKV 1982
            FQLGTEIATTGDNSWP+PVN+KRL+ NAQKTF+VD RRPSDMHPMEIVEAVDKLQERLKV
Sbjct: 959  FQLGTEIATTGDNSWPMPVNLKRLIWNAQKTFKVDLRRPSDMHPMEIVEAVDKLQERLKV 1018

Query: 1983 VVGDDYLSLEAQKNATLFFNILLRSALASKRVLKEYRLTREAFDWVVGEIESRFLQSLVA 2162
            V GDD +S+EAQKNATLFFNILLRS  ASKRVLKEYRLTREAF+WV+GEIESRFLQSLVA
Sbjct: 1019 VPGDDLISMEAQKNATLFFNILLRSTFASKRVLKEYRLTREAFEWVIGEIESRFLQSLVA 1078

Query: 2163 AGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVF 2342
             GEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSV+
Sbjct: 1079 PGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVY 1138

Query: 2343 LKSGVSKTKEKAKNVQCALEYTTLRSVTQATEVWYDPDPMSTIIEEDVEFVKSYYEMPDE 2522
            LK  VSKTKE+AKNVQCALEYTTLRSVTQATEVWYDPDPMSTIIEEDV+FVKSYYEMPDE
Sbjct: 1139 LKPDVSKTKERAKNVQCALEYTTLRSVTQATEVWYDPDPMSTIIEEDVDFVKSYYEMPDE 1198

Query: 2523 EIDPDKISPWLLRIELNREMMVDKKLSMADIAEKINLEFDDDLTCIFNDDNAEKLILRIR 2702
            E+ P+KISPWLLRIELNREMMVDKKLSMADIAEKINLEFDDDLTCIFNDDNAEKLILRIR
Sbjct: 1199 EVAPEKISPWLLRIELNREMMVDKKLSMADIAEKINLEFDDDLTCIFNDDNAEKLILRIR 1258

Query: 2703 IMNDEAPKGEMNDESSEDDVFLKKIEGNMLTEMALRGIPDINKVFIKNGKVNKFDENEGF 2882
            IMNDEAPKGE+ DES+EDDVFLKKIE NMLTEMALRGIPDINKVFIK+GKVNKFDE+EGF
Sbjct: 1259 IMNDEAPKGELQDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKSGKVNKFDESEGF 1318

Query: 2883 KAENEWMLDTEGVNLLAVICHEDVDARRTTSNHLIEVIEVLGIEAVRKALLDELRVVISF 3062
            K E EWMLDTEGVNLLAV+CHEDVDARRTTSNHLIEVIEVLGIEAVR++LLDELRVVISF
Sbjct: 1319 KPEVEWMLDTEGVNLLAVMCHEDVDARRTTSNHLIEVIEVLGIEAVRRSLLDELRVVISF 1378

Query: 3063 DGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAET 3242
            DGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAET
Sbjct: 1379 DGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAET 1438

Query: 3243 DYLRGVTENIMLGQLAPIGTGDCALYMNEEMLKQAIEIPLPSYMEGGLEFGMTPGRSPM- 3419
            D+LRGVTENIMLGQLAPIGTGDCALY+N++ML+ AIE+ LPSYME GL+FGMTP RSP+ 
Sbjct: 1439 DFLRGVTENIMLGQLAPIGTGDCALYLNDQMLQHAIELQLPSYME-GLDFGMTPSRSPIT 1497

Query: 3420 GTPYHDGMMSPNYMLSPNLRLSPVSDAQFSPYVGGVAF 3533
            GTPYHDGMMSPNY+LSPNLRLSP++DAQFSPYVGG+AF
Sbjct: 1498 GTPYHDGMMSPNYLLSPNLRLSPITDAQFSPYVGGMAF 1535


>ref|XP_006828844.1| hypothetical protein AMTR_s00001p00152770 [Amborella trichopoda]
            gi|548833823|gb|ERM96260.1| hypothetical protein
            AMTR_s00001p00152770 [Amborella trichopoda]
          Length = 1844

 Score = 2174 bits (5632), Expect = 0.0
 Identities = 1073/1178 (91%), Positives = 1134/1178 (96%), Gaps = 1/1178 (0%)
 Frame = +3

Query: 3    ARTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYI 182
            ARTVITPDPTINID+LGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYI
Sbjct: 362  ARTVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYI 421

Query: 183  IRDDGQRLDLRYLKKSSDQHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPY 362
            IR+DGQRLDLRYLKKS D HLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPY
Sbjct: 422  IREDGQRLDLRYLKKSGDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPY 481

Query: 363  STFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQANRPVMGIVQ 542
            STFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQ+NRPVMGIVQ
Sbjct: 482  STFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQ 541

Query: 543  DTLLGCRKITKRDTFIDKDVFMNILMWWEDFDGKVPAPTILKPKPLWTGKQVFNLIIPRQ 722
            DTLLGCRKITKRDTFI+KDVFMNILMWWEDFDGK+PAP ILKP+PLWTGKQVFNLIIP+Q
Sbjct: 542  DTLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKIPAPAILKPRPLWTGKQVFNLIIPKQ 601

Query: 723  INLLRYSAWHQEGEKGFITPGDTQVRIEKGELLSGTLCKKTLGSSSGSLIHVIWEEVGPD 902
            INL+RYSAWH E E GFITPGDT VRIE+GELLSGTLCKKTLG+SSGSLIHVIWEEVGPD
Sbjct: 602  INLIRYSAWHSESESGFITPGDTCVRIERGELLSGTLCKKTLGTSSGSLIHVIWEEVGPD 661

Query: 903  AARKFLGHTQWLVNYWLLQNAFSMGIGDTIADHDTMTKISETINKAKNEVNELIRAAQEK 1082
            AARKFLGHTQWLVNYWLLQ AFS+GIGDTIAD  TM KI+ETI+KAKNEV ELI+AAQEK
Sbjct: 662  AARKFLGHTQWLVNYWLLQQAFSIGIGDTIADAATMEKINETISKAKNEVKELIKAAQEK 721

Query: 1083 QLEAEPGRTMMESFENRVNQVLNKARDDAGSSAQKSLAESNNLKAMVTAGSKGSFINISQ 1262
            QLEAEPGRTMMESFENRVNQVLNKARDDAGSSAQKSL+ESNNLKAMVTAGSKGSFINISQ
Sbjct: 722  QLEAEPGRTMMESFENRVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQ 781

Query: 1263 MTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLSPQEFFFHAMGG 1442
            MTACVGQQNVEGKRIPFGF DRTLPHFTKDDYGPESRGFVENSYLRGL+PQEFFFHAMGG
Sbjct: 782  MTACVGQQNVEGKRIPFGFNDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGG 841

Query: 1443 REGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIES 1622
            REGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIES
Sbjct: 842  REGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIES 901

Query: 1623 QPLESLKLKRMDFNDMYKYEIDQPNWNPNYMLPEAVEDLKTIREIRSVFDAEVQKLEADR 1802
            Q L+SLK+KR +F ++YKYEIDQ NW+P+YMLPE VEDLKTIRE ++VFDAEVQKLEADR
Sbjct: 902  QKLDSLKMKRAEFENVYKYEIDQENWSPSYMLPEHVEDLKTIREFQNVFDAEVQKLEADR 961

Query: 1803 FQLGTEIATTGDNSWPLPVNIKRLVLNAQKTFRVDFRRPSDMHPMEIVEAVDKLQERLKV 1982
             QLGTEI TTGDNSWP+PVN+KRL+ NAQK F+VD RRPSDMHPMEIVEAVDKLQERLKV
Sbjct: 962  HQLGTEITTTGDNSWPMPVNLKRLIWNAQKMFKVDLRRPSDMHPMEIVEAVDKLQERLKV 1021

Query: 1983 VVGDDYLSLEAQKNATLFFNILLRSALASKRVLKEYRLTREAFDWVVGEIESRFLQSLVA 2162
            V GDD +S+EAQKNATLFFNILLRS  ASKRVLKEYRLTREAFDWV+GEIESRFLQSLVA
Sbjct: 1022 VPGDDLMSIEAQKNATLFFNILLRSTFASKRVLKEYRLTREAFDWVIGEIESRFLQSLVA 1081

Query: 2163 AGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVF 2342
             GEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSV+
Sbjct: 1082 PGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVY 1141

Query: 2343 LKSGVSKTKEKAKNVQCALEYTTLRSVTQATEVWYDPDPMSTIIEEDVEFVKSYYEMPDE 2522
            LK  V+KTKEKAKNVQCALEYTTLRSVT+ATEVWYDPDPMSTIIEEDV+FV+SYYEMPDE
Sbjct: 1142 LKHEVNKTKEKAKNVQCALEYTTLRSVTEATEVWYDPDPMSTIIEEDVDFVRSYYEMPDE 1201

Query: 2523 EIDPDKISPWLLRIELNREMMVDKKLSMADIAEKINLEFDDDLTCIFNDDNAEKLILRIR 2702
            E+ P+KISPWLLRIELNREMMVDKKLSMADIAEKINLEFDDDLTCIFNDDNAEKLILRIR
Sbjct: 1202 EVAPEKISPWLLRIELNREMMVDKKLSMADIAEKINLEFDDDLTCIFNDDNAEKLILRIR 1261

Query: 2703 IMNDEAPKGEMNDESSEDDVFLKKIEGNMLTEMALRGIPDINKVFIKNGKVNKFDENEGF 2882
            IMNDEAPKGE+ DESSEDDVFLKKIE NMLTEMALRGIPDINKVFIK+GK+NKFDENEGF
Sbjct: 1262 IMNDEAPKGELQDESSEDDVFLKKIESNMLTEMALRGIPDINKVFIKSGKINKFDENEGF 1321

Query: 2883 KAENEWMLDTEGVNLLAVICHEDVDARRTTSNHLIEVIEVLGIEAVRKALLDELRVVISF 3062
            K E EWMLDTEGVNLLAV+C+E+VDA RTTSNHLIEVI+VLGIEAVR+ALLDELRVVISF
Sbjct: 1322 KPEIEWMLDTEGVNLLAVMCNEEVDATRTTSNHLIEVIQVLGIEAVRRALLDELRVVISF 1381

Query: 3063 DGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAET 3242
            DGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAE 
Sbjct: 1382 DGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAEA 1441

Query: 3243 DYLRGVTENIMLGQLAPIGTGDCALYMNEEMLKQAIEIPLPSYMEGGLEFGMTPGRSPM- 3419
            D+LRGVTENIMLGQLAPIGTGDCALY+N++ML+QAIE+ LPSYME G++FGMTP RSPM 
Sbjct: 1442 DHLRGVTENIMLGQLAPIGTGDCALYLNDQMLQQAIELQLPSYME-GMDFGMTPSRSPMT 1500

Query: 3420 GTPYHDGMMSPNYMLSPNLRLSPVSDAQFSPYVGGVAF 3533
            GTPYH+GMMSP Y+LSPN+R SP++DAQFSPYVGG+AF
Sbjct: 1501 GTPYHEGMMSP-YLLSPNMRSSPITDAQFSPYVGGMAF 1537


>gb|EXC35292.1| DNA-directed RNA polymerase II subunit rpb1 [Morus notabilis]
          Length = 1866

 Score = 2153 bits (5579), Expect = 0.0
 Identities = 1064/1198 (88%), Positives = 1129/1198 (94%), Gaps = 21/1198 (1%)
 Frame = +3

Query: 3    ARTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYI 182
            ARTVITPDPTINID+LGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYI
Sbjct: 354  ARTVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYI 413

Query: 183  IRDDGQRLDLRYLKKSSDQHLELGYK--------------------VERHLNDGDFVLFN 302
            IRDDGQRLDLRYLKKSSD HLELGYK                    VERHLNDGDFVLFN
Sbjct: 414  IRDDGQRLDLRYLKKSSDHHLELGYKARLPILLLLLLFLGPWSGSVVERHLNDGDFVLFN 473

Query: 303  RQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELM 482
            RQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELM
Sbjct: 474  RQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELM 533

Query: 483  MVPKCIVSPQANRPVMGIVQDTLLGCRKITKRDTFIDKDVFMNILMWWEDFDGKVPAPTI 662
            MVPKCIVSPQ+NRPVMGIVQDTLLGCRKITKRDTFI+KDVFMNILMWWEDFDGKVPAP I
Sbjct: 534  MVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPAPAI 593

Query: 663  LKPKPLWTGKQVFNLIIPRQINLLRYSAWHQEGEKGFITPGDTQVRIEKGELLSGTLCKK 842
            LKP+PLWTGKQVFNLIIP+QINL R SAWH E E G+ITPGDT VRIEKGELLSGTLCKK
Sbjct: 594  LKPRPLWTGKQVFNLIIPKQINLNRTSAWHAESESGYITPGDTLVRIEKGELLSGTLCKK 653

Query: 843  TLGSSSGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNAFSMGIGDTIADHDTMTKIS 1022
            TLG+SSGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQN FS+GIGDTIAD  TM KI+
Sbjct: 654  TLGTSSGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNGFSIGIGDTIADASTMEKIN 713

Query: 1023 ETINKAKNEVNELIRAAQEKQLEAEPGRTMMESFENRVNQVLNKARDDAGSSAQKSLAES 1202
            ETI++AKN+V ELIR AQ K+LEAEPGRTMMESFEN+VNQVLNKARDDAGSSAQKSL+ES
Sbjct: 714  ETISRAKNDVKELIRKAQAKELEAEPGRTMMESFENKVNQVLNKARDDAGSSAQKSLSES 773

Query: 1203 NNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFV 1382
            NNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIP+GF+DRTLPHFTKDDYGPESRGFV
Sbjct: 774  NNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPYGFIDRTLPHFTKDDYGPESRGFV 833

Query: 1383 ENSYLRGLSPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSL 1562
            ENSYLRGL+PQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSL
Sbjct: 834  ENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSL 893

Query: 1563 GDVIQFLYGEDGMDAVWIESQPLESLKLKRMDFNDMYKYEIDQPNWNPNYMLPEAVEDLK 1742
            GDVIQFLYGEDGMD+VWIESQ L+SLK+K+ +F  +++YE D   WNP YMLPE VEDLK
Sbjct: 894  GDVIQFLYGEDGMDSVWIESQKLDSLKMKKTEFERVFRYEFDNETWNPTYMLPEHVEDLK 953

Query: 1743 TIREIRSVFDAEVQKLEADRFQLGTEIATTGDNSWPLPVNIKRLVLNAQKTFRVDFRRPS 1922
            TIRE R+VFDAEVQKLE+DR QLGTEIATTGDNSWPLPVN+KRL+ NAQKTF++DFRR S
Sbjct: 954  TIREFRNVFDAEVQKLESDRLQLGTEIATTGDNSWPLPVNLKRLIQNAQKTFKIDFRRTS 1013

Query: 1923 DMHPMEIVEAVDKLQERLKVVVGDDYLSLEAQKNATLFFNILLRSALASKRVLKEYRLTR 2102
            DMHPMEIVEA+DKLQERLKVV G+D LS+EAQKNATLFFNILLRS  ASKRVL+EYRLTR
Sbjct: 1014 DMHPMEIVEAIDKLQERLKVVPGEDPLSVEAQKNATLFFNILLRSTFASKRVLEEYRLTR 1073

Query: 2103 EAFDWVVGEIESRFLQSLVAAGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVP 2282
            E F+WV+GEIESRFLQSLVA GEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVP
Sbjct: 1074 EGFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVP 1133

Query: 2283 RLREIINVAKKIKTPSLSVFLKSGVSKTKEKAKNVQCALEYTTLRSVTQATEVWYDPDPM 2462
            RLREIINVAK+IKTPSLSVFLK   SKTKE+AK VQCALEYTTLRSVTQATEVWYDPDPM
Sbjct: 1134 RLREIINVAKRIKTPSLSVFLKPEASKTKERAKTVQCALEYTTLRSVTQATEVWYDPDPM 1193

Query: 2463 STIIEEDVEFVKSYYEMPDEEIDPDKISPWLLRIELNREMMVDKKLSMADIAEKINLEFD 2642
            STII+EDV+FV+SYYEMPDEEI+PDKISPWLLRIELNREMMVDKKLSMADIAEKIN+EFD
Sbjct: 1194 STIIDEDVDFVRSYYEMPDEEINPDKISPWLLRIELNREMMVDKKLSMADIAEKINVEFD 1253

Query: 2643 DDLTCIFNDDNAEKLILRIRIMNDEAPKGEMNDESSEDDVFLKKIEGNMLTEMALRGIPD 2822
            DDLTCIFNDDNAEKLILRIRIMNDEAPKG++ DE++EDDVFLKKIE NMLTEM+LRGIPD
Sbjct: 1254 DDLTCIFNDDNAEKLILRIRIMNDEAPKGDLTDEAAEDDVFLKKIESNMLTEMSLRGIPD 1313

Query: 2823 INKVFIKNGKVNKFDENEGFKAENEWMLDTEGVNLLAVICHEDVDARRTTSNHLIEVIEV 3002
            INKVFIK+GKVNKFDEN+GFK ENEWMLDTEGVNLLAVICHEDVDA+RTTSNHLIEVIEV
Sbjct: 1314 INKVFIKHGKVNKFDENDGFKPENEWMLDTEGVNLLAVICHEDVDAKRTTSNHLIEVIEV 1373

Query: 3003 LGIEAVRKALLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMM 3182
            LGIEAVR++LLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMM
Sbjct: 1374 LGIEAVRRSLLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMM 1433

Query: 3183 RCSFEETVDILLDAAVYAETDYLRGVTENIMLGQLAPIGTGDCALYMNEEMLKQAIEIPL 3362
            RCSFEETVDILLDAAVYAETDYLRGVTENIMLGQLAPIGTG CALY+N+EMLK AIE+ L
Sbjct: 1434 RCSFEETVDILLDAAVYAETDYLRGVTENIMLGQLAPIGTGGCALYLNDEMLKNAIELQL 1493

Query: 3363 PSYMEGGLEFGMTPGRSPM-GTPYHDGMMSPNYMLSPNLRLSPVSDAQFSPYVGGVAF 3533
            PSYM+ GL+FGMTP RSP+ GTPYH+GMMSP Y+LSPNLRLSP+SDAQFSPYVGG+AF
Sbjct: 1494 PSYMD-GLDFGMTPSRSPVSGTPYHEGMMSPGYLLSPNLRLSPISDAQFSPYVGGMAF 1550


>ref|XP_007203058.1| hypothetical protein PRUPE_ppa000093mg [Prunus persica]
            gi|462398589|gb|EMJ04257.1| hypothetical protein
            PRUPE_ppa000093mg [Prunus persica]
          Length = 1844

 Score = 2153 bits (5578), Expect = 0.0
 Identities = 1060/1178 (89%), Positives = 1124/1178 (95%), Gaps = 1/1178 (0%)
 Frame = +3

Query: 3    ARTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYI 182
            ARTVITPDP INIDQLGVPWSIALNLTYPETVTPYNIERLKELVE GPHPPPGKTGAKYI
Sbjct: 359  ARTVITPDPNINIDQLGVPWSIALNLTYPETVTPYNIERLKELVENGPHPPPGKTGAKYI 418

Query: 183  IRDDGQRLDLRYLKKSSDQHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPY 362
            IRDDGQRLDLRYLKKSSD HLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPY
Sbjct: 419  IRDDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPY 478

Query: 363  STFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQANRPVMGIVQ 542
            STFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQ+NRPVMGIVQ
Sbjct: 479  STFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQ 538

Query: 543  DTLLGCRKITKRDTFIDKDVFMNILMWWEDFDGKVPAPTILKPKPLWTGKQVFNLIIPRQ 722
            DTLLGCRKITKRDTFI+KDVFMNILMWWEDFDGKVPAP ILKP+PLWTGKQVFNLIIP+Q
Sbjct: 539  DTLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPAPAILKPRPLWTGKQVFNLIIPKQ 598

Query: 723  INLLRYSAWHQEGEKGFITPGDTQVRIEKGELLSGTLCKKTLGSSSGSLIHVIWEEVGPD 902
            INL R SAWH E E G ITPGDT VRIEKGELL+GTLCKK LG+S+GSLIHVIWEEVGPD
Sbjct: 599  INLQRTSAWHSEAESGNITPGDTFVRIEKGELLAGTLCKKALGTSTGSLIHVIWEEVGPD 658

Query: 903  AARKFLGHTQWLVNYWLLQNAFSMGIGDTIADHDTMTKISETINKAKNEVNELIRAAQEK 1082
            AARKFLGHTQWLVNYWLLQNAFS+GIGDTIAD  TM KI+ETI+KAKNEV +LI  AQ K
Sbjct: 659  AARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAATMEKINETISKAKNEVKDLISKAQSK 718

Query: 1083 QLEAEPGRTMMESFENRVNQVLNKARDDAGSSAQKSLAESNNLKAMVTAGSKGSFINISQ 1262
            QLEAEPGRTMM+SFEN+VNQVLN+ARDDAGSSAQKSL+ESNNLKAMVTAGSKGSFINISQ
Sbjct: 719  QLEAEPGRTMMDSFENKVNQVLNRARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQ 778

Query: 1263 MTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLSPQEFFFHAMGG 1442
            MTACVGQQNVEGKRIP+GF+DRTLPHFTKDDYGPESRGFVENSYLRGL+PQEFFFHAMGG
Sbjct: 779  MTACVGQQNVEGKRIPYGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGG 838

Query: 1443 REGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIES 1622
            REGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIES
Sbjct: 839  REGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIES 898

Query: 1623 QPLESLKLKRMDFNDMYKYEIDQPNWNPNYMLPEAVEDLKTIREIRSVFDAEVQKLEADR 1802
            Q L+SLK+K+ +F+  + YE+D  NWNP+YML E VEDLKTIRE R+VFDAEVQKLE DR
Sbjct: 899  QKLDSLKMKKSEFDKTFSYELDDENWNPDYMLHEHVEDLKTIREFRNVFDAEVQKLETDR 958

Query: 1803 FQLGTEIATTGDNSWPLPVNIKRLVLNAQKTFRVDFRRPSDMHPMEIVEAVDKLQERLKV 1982
             QLGTEIA TGDNSWPLPVN+KRL+ NAQKTF++DFRR SDMHPMEIVEA+DKLQERLKV
Sbjct: 959  LQLGTEIAVTGDNSWPLPVNLKRLIWNAQKTFKIDFRRTSDMHPMEIVEAIDKLQERLKV 1018

Query: 1983 VVGDDYLSLEAQKNATLFFNILLRSALASKRVLKEYRLTREAFDWVVGEIESRFLQSLVA 2162
            V GDD LS+EAQKNATLFF+ILLRS  ASKRVL EYRLTREAF+WV+GEIESRFLQSLVA
Sbjct: 1019 VPGDDLLSVEAQKNATLFFSILLRSTFASKRVLDEYRLTREAFEWVIGEIESRFLQSLVA 1078

Query: 2163 AGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVF 2342
             GEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAK+IKTPSLSV+
Sbjct: 1079 PGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKRIKTPSLSVY 1138

Query: 2343 LKSGVSKTKEKAKNVQCALEYTTLRSVTQATEVWYDPDPMSTIIEEDVEFVKSYYEMPDE 2522
            LK   +KTKE+AKNVQCALEYTTLRSVTQATEVWYDPDPMSTIIEEDV+FV SYYEMPDE
Sbjct: 1139 LKPEANKTKERAKNVQCALEYTTLRSVTQATEVWYDPDPMSTIIEEDVDFVNSYYEMPDE 1198

Query: 2523 EIDPDKISPWLLRIELNREMMVDKKLSMADIAEKINLEFDDDLTCIFNDDNAEKLILRIR 2702
            E++PDKISPWLLRIELNREMMVDKKLSMADIAEKINLEFDDDLTCIFNDDNAEKLILRIR
Sbjct: 1199 EVNPDKISPWLLRIELNREMMVDKKLSMADIAEKINLEFDDDLTCIFNDDNAEKLILRIR 1258

Query: 2703 IMNDEAPKGEMNDESSEDDVFLKKIEGNMLTEMALRGIPDINKVFIKNGKVNKFDENEGF 2882
            IMN EAPKGE+ DES+EDDVFLKKIE NMLTEMALRGIPDINKVFIK+GKVNKFD NEGF
Sbjct: 1259 IMNAEAPKGELVDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKHGKVNKFDPNEGF 1318

Query: 2883 KAENEWMLDTEGVNLLAVICHEDVDARRTTSNHLIEVIEVLGIEAVRKALLDELRVVISF 3062
            KAE EWMLDTEGVNLLAV+CH+DVDARRTTSNHLIE++E+LGIEAVR++LLDELRVVISF
Sbjct: 1319 KAEQEWMLDTEGVNLLAVLCHDDVDARRTTSNHLIEILEILGIEAVRRSLLDELRVVISF 1378

Query: 3063 DGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAET 3242
            DGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAV+AET
Sbjct: 1379 DGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVFAET 1438

Query: 3243 DYLRGVTENIMLGQLAPIGTGDCALYMNEEMLKQAIEIPLPSYMEGGLEFGMTPGRSPM- 3419
            DYLRGVTENIMLGQLAPIGTGDCALY+N+EMLK AIE+ LPSYM+ GL+FGMTP RSP+ 
Sbjct: 1439 DYLRGVTENIMLGQLAPIGTGDCALYLNDEMLKNAIELQLPSYMD-GLDFGMTPSRSPVS 1497

Query: 3420 GTPYHDGMMSPNYMLSPNLRLSPVSDAQFSPYVGGVAF 3533
            GTPYH+GMMSPNY+LSPNLRLSP+SDAQFSPYVGG+AF
Sbjct: 1498 GTPYHEGMMSPNYLLSPNLRLSPISDAQFSPYVGGMAF 1535


>ref|XP_006659128.1| PREDICTED: DNA-directed RNA polymerase II subunit 1-like [Oryza
            brachyantha]
          Length = 1855

 Score = 2148 bits (5566), Expect = 0.0
 Identities = 1049/1178 (89%), Positives = 1127/1178 (95%), Gaps = 1/1178 (0%)
 Frame = +3

Query: 3    ARTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYI 182
            ARTVITPDP INID+LGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYI
Sbjct: 359  ARTVITPDPNINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYI 418

Query: 183  IRDDGQRLDLRYLKKSSDQHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPY 362
            IR+DGQRLDLRY+KKSSDQHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPY
Sbjct: 419  IREDGQRLDLRYVKKSSDQHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPY 478

Query: 363  STFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQANRPVMGIVQ 542
            STFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQ+NRPVMGIVQ
Sbjct: 479  STFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQ 538

Query: 543  DTLLGCRKITKRDTFIDKDVFMNILMWWEDFDGKVPAPTILKPKPLWTGKQVFNLIIPRQ 722
            DTLLGCRKITKRDT I+KDVFMNILMWWEDFDGKVPAP ILKP+P+WTGKQVFNLIIP+ 
Sbjct: 539  DTLLGCRKITKRDTLIEKDVFMNILMWWEDFDGKVPAPAILKPRPIWTGKQVFNLIIPKP 598

Query: 723  INLLRYSAWHQEGEKGFITPGDTQVRIEKGELLSGTLCKKTLGSSSGSLIHVIWEEVGPD 902
            INL+R+SAWH E E GFITPGDT VRIEKGELLSGTLCKKTLG+S+GSLIHVIWEEVGPD
Sbjct: 599  INLIRFSAWHSEAETGFITPGDTMVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPD 658

Query: 903  AARKFLGHTQWLVNYWLLQNAFSMGIGDTIADHDTMTKISETINKAKNEVNELIRAAQEK 1082
            AARKFLGHTQWLVNYWLLQN FS+GIGDTIAD  TM KI+ETI+ AKNEV ELI+ A +K
Sbjct: 659  AARKFLGHTQWLVNYWLLQNGFSIGIGDTIADAATMEKINETISTAKNEVKELIKQAHDK 718

Query: 1083 QLEAEPGRTMMESFENRVNQVLNKARDDAGSSAQKSLAESNNLKAMVTAGSKGSFINISQ 1262
             LEAEPGRTMMESFENRVNQVLNKARDDAGSSAQKSL+ESNNLKAMVTAGSKGSFINISQ
Sbjct: 719  HLEAEPGRTMMESFENRVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQ 778

Query: 1263 MTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLSPQEFFFHAMGG 1442
            MTACVGQQNVEGKRIPFGF+DRTLPHFTKDDYGPESRGFVENSYLRGL+PQEFFFHAMGG
Sbjct: 779  MTACVGQQNVEGKRIPFGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGG 838

Query: 1443 REGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIES 1622
            REGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIES
Sbjct: 839  REGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIES 898

Query: 1623 QPLESLKLKRMDFNDMYKYEIDQPNWNPNYMLPEAVEDLKTIREIRSVFDAEVQKLEADR 1802
            Q L+SLK+K+ +F+ +++YE+D  NW PNYMLPE VEDLKTIRE R+VF+AEVQKLEADR
Sbjct: 899  QKLDSLKMKKGEFDTVFRYELDDENWRPNYMLPEHVEDLKTIREFRNVFEAEVQKLEADR 958

Query: 1803 FQLGTEIATTGDNSWPLPVNIKRLVLNAQKTFRVDFRRPSDMHPMEIVEAVDKLQERLKV 1982
            FQLGTEIATTGDN+WP+PVN+KRL+ NAQKTF++D RRPSDMHPMEIVEA+DKLQERLKV
Sbjct: 959  FQLGTEIATTGDNTWPMPVNLKRLIWNAQKTFKIDLRRPSDMHPMEIVEAIDKLQERLKV 1018

Query: 1983 VVGDDYLSLEAQKNATLFFNILLRSALASKRVLKEYRLTREAFDWVVGEIESRFLQSLVA 2162
            V GDD +S+EAQKNATLFFNILLRS  ASKRVLKEYRLT+EAF+WV+GEIESRFLQSLVA
Sbjct: 1019 VPGDDAMSIEAQKNATLFFNILLRSTFASKRVLKEYRLTKEAFEWVIGEIESRFLQSLVA 1078

Query: 2163 AGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVF 2342
             GEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSV+
Sbjct: 1079 PGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVY 1138

Query: 2343 LKSGVSKTKEKAKNVQCALEYTTLRSVTQATEVWYDPDPMSTIIEEDVEFVKSYYEMPDE 2522
            LK  V+K KE AKNVQCALEYTTLRSVT ATE+WYDPDP+ TIIEEDVEFV+SYYEMPDE
Sbjct: 1139 LKPEVNKKKELAKNVQCALEYTTLRSVTHATEIWYDPDPLGTIIEEDVEFVRSYYEMPDE 1198

Query: 2523 EIDPDKISPWLLRIELNREMMVDKKLSMADIAEKINLEFDDDLTCIFNDDNAEKLILRIR 2702
            ++DPDKISPWLLRIELNREMMVDKKLSMADIAEKIN EFDDDL+CIFNDDNA+KLILR+R
Sbjct: 1199 DVDPDKISPWLLRIELNREMMVDKKLSMADIAEKINHEFDDDLSCIFNDDNADKLILRVR 1258

Query: 2703 IMNDEAPKGEMNDESSEDDVFLKKIEGNMLTEMALRGIPDINKVFIKNGKVNKFDENEGF 2882
            I NDEAPKGE+ DES+EDDVFLKKIE NMLTEMALRGIPDINKVFIK GKVNKF++N+GF
Sbjct: 1259 ITNDEAPKGEIQDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKYGKVNKFEDNDGF 1318

Query: 2883 KAENEWMLDTEGVNLLAVICHEDVDARRTTSNHLIEVIEVLGIEAVRKALLDELRVVISF 3062
            K +NEWMLDTEGVNLLAV+CHEDVDA RTTSNHLIEVIEVLGIEAVR+ALLDELRVVISF
Sbjct: 1319 KPDNEWMLDTEGVNLLAVMCHEDVDATRTTSNHLIEVIEVLGIEAVRRALLDELRVVISF 1378

Query: 3063 DGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAET 3242
            DGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGP+MRCSFEETVDILLDAAVYAE+
Sbjct: 1379 DGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPLMRCSFEETVDILLDAAVYAES 1438

Query: 3243 DYLRGVTENIMLGQLAPIGTGDCALYMNEEMLKQAIEIPLPSYMEGGLEFGMTPGRSPM- 3419
            DYLRGVTENIMLGQLAPIGTG CALY+N++ML+QAIE+ LPSY+E GL+FGMTP RSP+ 
Sbjct: 1439 DYLRGVTENIMLGQLAPIGTGGCALYLNDQMLQQAIELQLPSYVE-GLDFGMTPARSPIS 1497

Query: 3420 GTPYHDGMMSPNYMLSPNLRLSPVSDAQFSPYVGGVAF 3533
            GTPYH+GMMSP+Y+LSPN+R SP++DAQFSPYVGG+AF
Sbjct: 1498 GTPYHEGMMSPSYLLSPNIRASPITDAQFSPYVGGMAF 1535


>ref|XP_004169177.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like [Cucumis
            sativus]
          Length = 1853

 Score = 2145 bits (5559), Expect = 0.0
 Identities = 1058/1178 (89%), Positives = 1122/1178 (95%), Gaps = 1/1178 (0%)
 Frame = +3

Query: 3    ARTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYI 182
            ARTVITPDPTINID+LGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYI
Sbjct: 359  ARTVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYI 418

Query: 183  IRDDGQRLDLRYLKKSSDQHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPY 362
            IRDDGQRLDLRYLKKSSD HLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPY
Sbjct: 419  IRDDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPY 478

Query: 363  STFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQANRPVMGIVQ 542
            STFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQ+NRPVMGIVQ
Sbjct: 479  STFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQ 538

Query: 543  DTLLGCRKITKRDTFIDKDVFMNILMWWEDFDGKVPAPTILKPKPLWTGKQVFNLIIPRQ 722
            DTLLGCRKITKRDTFI KDVFMN LMWWEDFDGK+PAP ILKP+PLWTGKQVFNLIIP+Q
Sbjct: 539  DTLLGCRKITKRDTFITKDVFMNTLMWWEDFDGKIPAPAILKPQPLWTGKQVFNLIIPKQ 598

Query: 723  INLLRYSAWHQEGEKGFITPGDTQVRIEKGELLSGTLCKKTLGSSSGSLIHVIWEEVGPD 902
            INL R SAWH E E G ITPGDT VRIEKGELLSGTLCKK LG+S+GSLIHVIWEEVGPD
Sbjct: 599  INLTRTSAWHSESETGHITPGDTFVRIEKGELLSGTLCKKALGTSTGSLIHVIWEEVGPD 658

Query: 903  AARKFLGHTQWLVNYWLLQNAFSMGIGDTIADHDTMTKISETINKAKNEVNELIRAAQEK 1082
            AARKFLGHTQWLVNYWLLQNAFS+GIGDTIAD  TM KI+ETI+ AKNEV  LI+ AQE+
Sbjct: 659  AARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAATMEKINETISAAKNEVKNLIKKAQER 718

Query: 1083 QLEAEPGRTMMESFENRVNQVLNKARDDAGSSAQKSLAESNNLKAMVTAGSKGSFINISQ 1262
             LE EPGRTMM+SFEN+VNQVLNKARDDAGSSAQKSL+ESNNLKAMVTAGSKGSFINISQ
Sbjct: 719  SLEPEPGRTMMDSFENKVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQ 778

Query: 1263 MTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLSPQEFFFHAMGG 1442
            MTACVGQQNVEGKRIPFGF+DRTLPHFTKDDYGPESRGFVENSYLRGL+PQEFFFHAMGG
Sbjct: 779  MTACVGQQNVEGKRIPFGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGG 838

Query: 1443 REGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIES 1622
            REGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIES
Sbjct: 839  REGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIES 898

Query: 1623 QPLESLKLKRMDFNDMYKYEIDQPNWNPNYMLPEAVEDLKTIREIRSVFDAEVQKLEADR 1802
            Q L+SLK+K+ +F  +++YE +  NW PNYMLPE VEDLKTIRE R+VF+AEVQKLEADR
Sbjct: 899  QKLDSLKMKKKEFERIFRYEFEDENWKPNYMLPEHVEDLKTIREFRNVFEAEVQKLEADR 958

Query: 1803 FQLGTEIATTGDNSWPLPVNIKRLVLNAQKTFRVDFRRPSDMHPMEIVEAVDKLQERLKV 1982
            +QLGTEIATTG+NSWP+PVN+KRL+ NAQKTF++DFRR SDMHPMEIVEA+DKLQERLKV
Sbjct: 959  YQLGTEIATTGENSWPMPVNLKRLIQNAQKTFKIDFRRASDMHPMEIVEAIDKLQERLKV 1018

Query: 1983 VVGDDYLSLEAQKNATLFFNILLRSALASKRVLKEYRLTREAFDWVVGEIESRFLQSLVA 2162
            V G+D LS+EAQKNATLFFNILLRS  ASKRVL EYRLTREAF+WV+GEIESRFLQSLVA
Sbjct: 1019 VPGEDPLSVEAQKNATLFFNILLRSTFASKRVLDEYRLTREAFEWVIGEIESRFLQSLVA 1078

Query: 2163 AGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVF 2342
             GEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAK+IKTPSLSV+
Sbjct: 1079 PGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKRIKTPSLSVY 1138

Query: 2343 LKSGVSKTKEKAKNVQCALEYTTLRSVTQATEVWYDPDPMSTIIEEDVEFVKSYYEMPDE 2522
            LK   +KTKE+AK VQCALEYTTLRSVTQATEVWYDPDPMSTIIEED++FVKSYYEMPDE
Sbjct: 1139 LKPEANKTKERAKTVQCALEYTTLRSVTQATEVWYDPDPMSTIIEEDIDFVKSYYEMPDE 1198

Query: 2523 EIDPDKISPWLLRIELNREMMVDKKLSMADIAEKINLEFDDDLTCIFNDDNAEKLILRIR 2702
            EI P+KISPWLLRIELNREMMVDKKLSMA+IAEKINLEFDDDLTCIFNDDNAEKLILRIR
Sbjct: 1199 EIAPEKISPWLLRIELNREMMVDKKLSMANIAEKINLEFDDDLTCIFNDDNAEKLILRIR 1258

Query: 2703 IMNDEAPKGEMNDESSEDDVFLKKIEGNMLTEMALRGIPDINKVFIKNGKVNKFDENEGF 2882
            IMNDEAPKGE+ DES+EDDVFLKKIE NMLTEMALRGIPDINKVFIK GKVNKFDENEGF
Sbjct: 1259 IMNDEAPKGELTDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKCGKVNKFDENEGF 1318

Query: 2883 KAENEWMLDTEGVNLLAVICHEDVDARRTTSNHLIEVIEVLGIEAVRKALLDELRVVISF 3062
            K E EWMLDTEGVNLLAV+ HEDVDARRTTSNHLIEVIEVLGIEAVR++LLDELRVVISF
Sbjct: 1319 KPEMEWMLDTEGVNLLAVMTHEDVDARRTTSNHLIEVIEVLGIEAVRRSLLDELRVVISF 1378

Query: 3063 DGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAET 3242
            DGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAET
Sbjct: 1379 DGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAET 1438

Query: 3243 DYLRGVTENIMLGQLAPIGTGDCALYMNEEMLKQAIEIPLPSYMEGGLEFGMTPGRSPM- 3419
            D+LRGVTENIMLGQLAPIGTG CALY+N+EMLK AIE+ LPSY++ GL+FGMTP RSP+ 
Sbjct: 1439 DHLRGVTENIMLGQLAPIGTGGCALYLNDEMLKNAIELQLPSYID-GLDFGMTPSRSPIS 1497

Query: 3420 GTPYHDGMMSPNYMLSPNLRLSPVSDAQFSPYVGGVAF 3533
            GTPYH+GMMSPNY+LSPNLRLSP+SDAQFSPYVGG+AF
Sbjct: 1498 GTPYHEGMMSPNYLLSPNLRLSPISDAQFSPYVGGMAF 1535


>ref|XP_004146161.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase II
            subunit RPB1-like [Cucumis sativus]
          Length = 1832

 Score = 2145 bits (5559), Expect = 0.0
 Identities = 1058/1178 (89%), Positives = 1122/1178 (95%), Gaps = 1/1178 (0%)
 Frame = +3

Query: 3    ARTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYI 182
            ARTVITPDPTINID+LGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYI
Sbjct: 359  ARTVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYI 418

Query: 183  IRDDGQRLDLRYLKKSSDQHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPY 362
            IRDDGQRLDLRYLKKSSD HLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPY
Sbjct: 419  IRDDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPY 478

Query: 363  STFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQANRPVMGIVQ 542
            STFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQ+NRPVMGIVQ
Sbjct: 479  STFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQ 538

Query: 543  DTLLGCRKITKRDTFIDKDVFMNILMWWEDFDGKVPAPTILKPKPLWTGKQVFNLIIPRQ 722
            DTLLGCRKITKRDTFI KDVFMN LMWWEDFDGK+PAP ILKP+PLWTGKQVFNLIIP+Q
Sbjct: 539  DTLLGCRKITKRDTFITKDVFMNTLMWWEDFDGKIPAPAILKPQPLWTGKQVFNLIIPKQ 598

Query: 723  INLLRYSAWHQEGEKGFITPGDTQVRIEKGELLSGTLCKKTLGSSSGSLIHVIWEEVGPD 902
            INL R SAWH E E G ITPGDT VRIEKGELLSGTLCKK LG+S+GSLIHVIWEEVGPD
Sbjct: 599  INLTRTSAWHSESETGHITPGDTFVRIEKGELLSGTLCKKALGTSTGSLIHVIWEEVGPD 658

Query: 903  AARKFLGHTQWLVNYWLLQNAFSMGIGDTIADHDTMTKISETINKAKNEVNELIRAAQEK 1082
            AARKFLGHTQWLVNYWLLQNAFS+GIGDTIAD  TM KI+ETI+ AKNEV  LI+ AQE+
Sbjct: 659  AARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAATMEKINETISAAKNEVKNLIKKAQER 718

Query: 1083 QLEAEPGRTMMESFENRVNQVLNKARDDAGSSAQKSLAESNNLKAMVTAGSKGSFINISQ 1262
             LE EPGRTMM+SFEN+VNQVLNKARDDAGSSAQKSL+ESNNLKAMVTAGSKGSFINISQ
Sbjct: 719  SLEPEPGRTMMDSFENKVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQ 778

Query: 1263 MTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLSPQEFFFHAMGG 1442
            MTACVGQQNVEGKRIPFGF+DRTLPHFTKDDYGPESRGFVENSYLRGL+PQEFFFHAMGG
Sbjct: 779  MTACVGQQNVEGKRIPFGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGG 838

Query: 1443 REGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIES 1622
            REGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIES
Sbjct: 839  REGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIES 898

Query: 1623 QPLESLKLKRMDFNDMYKYEIDQPNWNPNYMLPEAVEDLKTIREIRSVFDAEVQKLEADR 1802
            Q L+SLK+K+ +F  +++YE +  NW PNYMLPE VEDLKTIRE R+VF+AEVQKLEADR
Sbjct: 899  QKLDSLKMKKKEFERIFRYEFEDENWKPNYMLPEHVEDLKTIREFRNVFEAEVQKLEADR 958

Query: 1803 FQLGTEIATTGDNSWPLPVNIKRLVLNAQKTFRVDFRRPSDMHPMEIVEAVDKLQERLKV 1982
            +QLGTEIATTG+NSWP+PVN+KRL+ NAQKTF++DFRR SDMHPMEIVEA+DKLQERLKV
Sbjct: 959  YQLGTEIATTGENSWPMPVNLKRLIQNAQKTFKIDFRRASDMHPMEIVEAIDKLQERLKV 1018

Query: 1983 VVGDDYLSLEAQKNATLFFNILLRSALASKRVLKEYRLTREAFDWVVGEIESRFLQSLVA 2162
            V G+D LS+EAQKNATLFFNILLRS  ASKRVL EYRLTREAF+WV+GEIESRFLQSLVA
Sbjct: 1019 VPGEDPLSVEAQKNATLFFNILLRSTFASKRVLDEYRLTREAFEWVIGEIESRFLQSLVA 1078

Query: 2163 AGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVF 2342
             GEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAK+IKTPSLSV+
Sbjct: 1079 PGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKRIKTPSLSVY 1138

Query: 2343 LKSGVSKTKEKAKNVQCALEYTTLRSVTQATEVWYDPDPMSTIIEEDVEFVKSYYEMPDE 2522
            LK   +KTKE+AK VQCALEYTTLRSVTQATEVWYDPDPMSTIIEED++FVKSYYEMPDE
Sbjct: 1139 LKPEANKTKERAKTVQCALEYTTLRSVTQATEVWYDPDPMSTIIEEDIDFVKSYYEMPDE 1198

Query: 2523 EIDPDKISPWLLRIELNREMMVDKKLSMADIAEKINLEFDDDLTCIFNDDNAEKLILRIR 2702
            EI P+KISPWLLRIELNREMMVDKKLSMA+IAEKINLEFDDDLTCIFNDDNAEKLILRIR
Sbjct: 1199 EIAPEKISPWLLRIELNREMMVDKKLSMANIAEKINLEFDDDLTCIFNDDNAEKLILRIR 1258

Query: 2703 IMNDEAPKGEMNDESSEDDVFLKKIEGNMLTEMALRGIPDINKVFIKNGKVNKFDENEGF 2882
            IMNDEAPKGE+ DES+EDDVFLKKIE NMLTEMALRGIPDINKVFIK GKVNKFDENEGF
Sbjct: 1259 IMNDEAPKGELTDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKCGKVNKFDENEGF 1318

Query: 2883 KAENEWMLDTEGVNLLAVICHEDVDARRTTSNHLIEVIEVLGIEAVRKALLDELRVVISF 3062
            K E EWMLDTEGVNLLAV+ HEDVDARRTTSNHLIEVIEVLGIEAVR++LLDELRVVISF
Sbjct: 1319 KPEMEWMLDTEGVNLLAVMTHEDVDARRTTSNHLIEVIEVLGIEAVRRSLLDELRVVISF 1378

Query: 3063 DGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAET 3242
            DGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAET
Sbjct: 1379 DGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAET 1438

Query: 3243 DYLRGVTENIMLGQLAPIGTGDCALYMNEEMLKQAIEIPLPSYMEGGLEFGMTPGRSPM- 3419
            D+LRGVTENIMLGQLAPIGTG CALY+N+EMLK AIE+ LPSY++ GL+FGMTP RSP+ 
Sbjct: 1439 DHLRGVTENIMLGQLAPIGTGGCALYLNDEMLKNAIELQLPSYID-GLDFGMTPSRSPIS 1497

Query: 3420 GTPYHDGMMSPNYMLSPNLRLSPVSDAQFSPYVGGVAF 3533
            GTPYH+GMMSPNY+LSPNLRLSP+SDAQFSPYVGG+AF
Sbjct: 1498 GTPYHEGMMSPNYLLSPNLRLSPISDAQFSPYVGGMAF 1535


>ref|XP_006467031.1| PREDICTED: DNA-directed RNA polymerase II subunit 1-like isoform X5
            [Citrus sinensis]
          Length = 1963

 Score = 2143 bits (5553), Expect = 0.0
 Identities = 1052/1178 (89%), Positives = 1125/1178 (95%), Gaps = 1/1178 (0%)
 Frame = +3

Query: 3    ARTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYI 182
            ARTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYI
Sbjct: 359  ARTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYI 418

Query: 183  IRDDGQRLDLRYLKKSSDQHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPY 362
            IRDDGQRLDLRYLKKSSD HLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPY
Sbjct: 419  IRDDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPY 478

Query: 363  STFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQANRPVMGIVQ 542
            STFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQ+NRPVMGIVQ
Sbjct: 479  STFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQ 538

Query: 543  DTLLGCRKITKRDTFIDKDVFMNILMWWEDFDGKVPAPTILKPKPLWTGKQVFNLIIPRQ 722
            DTLLGCRKITKRDTFI+KDVFMNILMWWEDFDGKVP PTILKP+PLWTGKQVFNLIIP+Q
Sbjct: 539  DTLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQ 598

Query: 723  INLLRYSAWHQEGEKGFITPGDTQVRIEKGELLSGTLCKKTLGSSSGSLIHVIWEEVGPD 902
            INL R +AWH + +KG +T GDT VRIEKGELLSGTLCKKTLG+S+GSLIHVIWEEVGPD
Sbjct: 599  INLFRTAAWHADNDKGILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPD 658

Query: 903  AARKFLGHTQWLVNYWLLQNAFSMGIGDTIADHDTMTKISETINKAKNEVNELIRAAQEK 1082
            AARKFLGHTQWLVNYWLLQNAFS+GIGDTIAD  TM  I++TI+KAKN V  LI+ AQ+K
Sbjct: 659  AARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDK 718

Query: 1083 QLEAEPGRTMMESFENRVNQVLNKARDDAGSSAQKSLAESNNLKAMVTAGSKGSFINISQ 1262
             LE EPGRTMMESFEN+VNQVLN ARD+AGSSAQKSL+ESNNLKAMVTAGSKGSFINISQ
Sbjct: 719  SLEPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQ 778

Query: 1263 MTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLSPQEFFFHAMGG 1442
            MTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGL+PQEFFFHAMGG
Sbjct: 779  MTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGG 838

Query: 1443 REGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIES 1622
            REGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMD+VWIES
Sbjct: 839  REGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIES 898

Query: 1623 QPLESLKLKRMDFNDMYKYEIDQPNWNPNYMLPEAVEDLKTIREIRSVFDAEVQKLEADR 1802
            Q L+SLK+K+ +F+  +++E+D+ NWNPNYML E ++DLKTI+E+R VFDAEVQKLEADR
Sbjct: 899  QTLDSLKMKKSEFDKAFRFEMDEENWNPNYMLQEYIDDLKTIKELRDVFDAEVQKLEADR 958

Query: 1803 FQLGTEIATTGDNSWPLPVNIKRLVLNAQKTFRVDFRRPSDMHPMEIVEAVDKLQERLKV 1982
            +QL TEIAT+GD+SWPLPVN+KRL+ NAQKTF+VD RRPSDMHPME+VEAVDKLQERLKV
Sbjct: 959  YQLATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKV 1018

Query: 1983 VVGDDYLSLEAQKNATLFFNILLRSALASKRVLKEYRLTREAFDWVVGEIESRFLQSLVA 2162
            V G+D LS+EAQKNATLFFNILLRS  ASKRVLKE+RLTREAF+WV+GEIESRFLQSLVA
Sbjct: 1019 VPGEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLVA 1078

Query: 2163 AGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVF 2342
             GEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVF
Sbjct: 1079 PGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVF 1138

Query: 2343 LKSGVSKTKEKAKNVQCALEYTTLRSVTQATEVWYDPDPMSTIIEEDVEFVKSYYEMPDE 2522
            LK GV+ TKE+AKNVQCALEYTTLRSVT+ATEVWYDPDPM TIIEEDVEFVKSYYEMPDE
Sbjct: 1139 LKPGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVEFVKSYYEMPDE 1198

Query: 2523 EIDPDKISPWLLRIELNREMMVDKKLSMADIAEKINLEFDDDLTCIFNDDNAEKLILRIR 2702
            +I P+KISPWLLRIELNREMMVDKKLSMA +AEKIN EFDDDLTCIFNDDNA+KLILRIR
Sbjct: 1199 DIAPEKISPWLLRIELNREMMVDKKLSMAAVAEKINQEFDDDLTCIFNDDNADKLILRIR 1258

Query: 2703 IMNDEAPKGEMNDESSEDDVFLKKIEGNMLTEMALRGIPDINKVFIKNGKVNKFDENEGF 2882
            IMNDEAPKGE+NDES+EDDVFLKKIE NMLTEMALRGIPDINKVFIK GK  K+D+NEGF
Sbjct: 1259 IMNDEAPKGELNDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKKGKTTKYDDNEGF 1318

Query: 2883 KAENEWMLDTEGVNLLAVICHEDVDARRTTSNHLIEVIEVLGIEAVRKALLDELRVVISF 3062
            K+E+EWMLDTEGVNLLAV+CHEDVDARRTTSNHLIE+IEVLGIEAVR+ALLDELRVVISF
Sbjct: 1319 KSEDEWMLDTEGVNLLAVMCHEDVDARRTTSNHLIEIIEVLGIEAVRRALLDELRVVISF 1378

Query: 3063 DGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAET 3242
            DGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAV+AE+
Sbjct: 1379 DGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVFAES 1438

Query: 3243 DYLRGVTENIMLGQLAPIGTGDCALYMNEEMLKQAIEIPLPSYMEGGLEFGMTPGRSPM- 3419
            DYLRGVTENIMLGQLAPIGTGDC+LY+N+EMLK AIE+ LPSYME GLEFGMTP RSP+ 
Sbjct: 1439 DYLRGVTENIMLGQLAPIGTGDCSLYLNDEMLKNAIELQLPSYME-GLEFGMTPARSPVS 1497

Query: 3420 GTPYHDGMMSPNYMLSPNLRLSPVSDAQFSPYVGGVAF 3533
            GTPYHDGMMSP Y+ SPNLRLSPV+DAQFSPYVGG+AF
Sbjct: 1498 GTPYHDGMMSPGYLFSPNLRLSPVTDAQFSPYVGGMAF 1535


>ref|XP_006467030.1| PREDICTED: DNA-directed RNA polymerase II subunit 1-like isoform X4
            [Citrus sinensis]
          Length = 1853

 Score = 2143 bits (5553), Expect = 0.0
 Identities = 1052/1178 (89%), Positives = 1125/1178 (95%), Gaps = 1/1178 (0%)
 Frame = +3

Query: 3    ARTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYI 182
            ARTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYI
Sbjct: 359  ARTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYI 418

Query: 183  IRDDGQRLDLRYLKKSSDQHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPY 362
            IRDDGQRLDLRYLKKSSD HLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPY
Sbjct: 419  IRDDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPY 478

Query: 363  STFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQANRPVMGIVQ 542
            STFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQ+NRPVMGIVQ
Sbjct: 479  STFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQ 538

Query: 543  DTLLGCRKITKRDTFIDKDVFMNILMWWEDFDGKVPAPTILKPKPLWTGKQVFNLIIPRQ 722
            DTLLGCRKITKRDTFI+KDVFMNILMWWEDFDGKVP PTILKP+PLWTGKQVFNLIIP+Q
Sbjct: 539  DTLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQ 598

Query: 723  INLLRYSAWHQEGEKGFITPGDTQVRIEKGELLSGTLCKKTLGSSSGSLIHVIWEEVGPD 902
            INL R +AWH + +KG +T GDT VRIEKGELLSGTLCKKTLG+S+GSLIHVIWEEVGPD
Sbjct: 599  INLFRTAAWHADNDKGILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPD 658

Query: 903  AARKFLGHTQWLVNYWLLQNAFSMGIGDTIADHDTMTKISETINKAKNEVNELIRAAQEK 1082
            AARKFLGHTQWLVNYWLLQNAFS+GIGDTIAD  TM  I++TI+KAKN V  LI+ AQ+K
Sbjct: 659  AARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDK 718

Query: 1083 QLEAEPGRTMMESFENRVNQVLNKARDDAGSSAQKSLAESNNLKAMVTAGSKGSFINISQ 1262
             LE EPGRTMMESFEN+VNQVLN ARD+AGSSAQKSL+ESNNLKAMVTAGSKGSFINISQ
Sbjct: 719  SLEPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQ 778

Query: 1263 MTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLSPQEFFFHAMGG 1442
            MTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGL+PQEFFFHAMGG
Sbjct: 779  MTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGG 838

Query: 1443 REGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIES 1622
            REGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMD+VWIES
Sbjct: 839  REGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIES 898

Query: 1623 QPLESLKLKRMDFNDMYKYEIDQPNWNPNYMLPEAVEDLKTIREIRSVFDAEVQKLEADR 1802
            Q L+SLK+K+ +F+  +++E+D+ NWNPNYML E ++DLKTI+E+R VFDAEVQKLEADR
Sbjct: 899  QTLDSLKMKKSEFDKAFRFEMDEENWNPNYMLQEYIDDLKTIKELRDVFDAEVQKLEADR 958

Query: 1803 FQLGTEIATTGDNSWPLPVNIKRLVLNAQKTFRVDFRRPSDMHPMEIVEAVDKLQERLKV 1982
            +QL TEIAT+GD+SWPLPVN+KRL+ NAQKTF+VD RRPSDMHPME+VEAVDKLQERLKV
Sbjct: 959  YQLATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKV 1018

Query: 1983 VVGDDYLSLEAQKNATLFFNILLRSALASKRVLKEYRLTREAFDWVVGEIESRFLQSLVA 2162
            V G+D LS+EAQKNATLFFNILLRS  ASKRVLKE+RLTREAF+WV+GEIESRFLQSLVA
Sbjct: 1019 VPGEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLVA 1078

Query: 2163 AGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVF 2342
             GEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVF
Sbjct: 1079 PGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVF 1138

Query: 2343 LKSGVSKTKEKAKNVQCALEYTTLRSVTQATEVWYDPDPMSTIIEEDVEFVKSYYEMPDE 2522
            LK GV+ TKE+AKNVQCALEYTTLRSVT+ATEVWYDPDPM TIIEEDVEFVKSYYEMPDE
Sbjct: 1139 LKPGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVEFVKSYYEMPDE 1198

Query: 2523 EIDPDKISPWLLRIELNREMMVDKKLSMADIAEKINLEFDDDLTCIFNDDNAEKLILRIR 2702
            +I P+KISPWLLRIELNREMMVDKKLSMA +AEKIN EFDDDLTCIFNDDNA+KLILRIR
Sbjct: 1199 DIAPEKISPWLLRIELNREMMVDKKLSMAAVAEKINQEFDDDLTCIFNDDNADKLILRIR 1258

Query: 2703 IMNDEAPKGEMNDESSEDDVFLKKIEGNMLTEMALRGIPDINKVFIKNGKVNKFDENEGF 2882
            IMNDEAPKGE+NDES+EDDVFLKKIE NMLTEMALRGIPDINKVFIK GK  K+D+NEGF
Sbjct: 1259 IMNDEAPKGELNDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKKGKTTKYDDNEGF 1318

Query: 2883 KAENEWMLDTEGVNLLAVICHEDVDARRTTSNHLIEVIEVLGIEAVRKALLDELRVVISF 3062
            K+E+EWMLDTEGVNLLAV+CHEDVDARRTTSNHLIE+IEVLGIEAVR+ALLDELRVVISF
Sbjct: 1319 KSEDEWMLDTEGVNLLAVMCHEDVDARRTTSNHLIEIIEVLGIEAVRRALLDELRVVISF 1378

Query: 3063 DGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAET 3242
            DGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAV+AE+
Sbjct: 1379 DGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVFAES 1438

Query: 3243 DYLRGVTENIMLGQLAPIGTGDCALYMNEEMLKQAIEIPLPSYMEGGLEFGMTPGRSPM- 3419
            DYLRGVTENIMLGQLAPIGTGDC+LY+N+EMLK AIE+ LPSYME GLEFGMTP RSP+ 
Sbjct: 1439 DYLRGVTENIMLGQLAPIGTGDCSLYLNDEMLKNAIELQLPSYME-GLEFGMTPARSPVS 1497

Query: 3420 GTPYHDGMMSPNYMLSPNLRLSPVSDAQFSPYVGGVAF 3533
            GTPYHDGMMSP Y+ SPNLRLSPV+DAQFSPYVGG+AF
Sbjct: 1498 GTPYHDGMMSPGYLFSPNLRLSPVTDAQFSPYVGGMAF 1535


>ref|XP_006467029.1| PREDICTED: DNA-directed RNA polymerase II subunit 1-like isoform X3
            [Citrus sinensis]
          Length = 1790

 Score = 2143 bits (5553), Expect = 0.0
 Identities = 1052/1178 (89%), Positives = 1125/1178 (95%), Gaps = 1/1178 (0%)
 Frame = +3

Query: 3    ARTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYI 182
            ARTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYI
Sbjct: 359  ARTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYI 418

Query: 183  IRDDGQRLDLRYLKKSSDQHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPY 362
            IRDDGQRLDLRYLKKSSD HLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPY
Sbjct: 419  IRDDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPY 478

Query: 363  STFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQANRPVMGIVQ 542
            STFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQ+NRPVMGIVQ
Sbjct: 479  STFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQ 538

Query: 543  DTLLGCRKITKRDTFIDKDVFMNILMWWEDFDGKVPAPTILKPKPLWTGKQVFNLIIPRQ 722
            DTLLGCRKITKRDTFI+KDVFMNILMWWEDFDGKVP PTILKP+PLWTGKQVFNLIIP+Q
Sbjct: 539  DTLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQ 598

Query: 723  INLLRYSAWHQEGEKGFITPGDTQVRIEKGELLSGTLCKKTLGSSSGSLIHVIWEEVGPD 902
            INL R +AWH + +KG +T GDT VRIEKGELLSGTLCKKTLG+S+GSLIHVIWEEVGPD
Sbjct: 599  INLFRTAAWHADNDKGILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPD 658

Query: 903  AARKFLGHTQWLVNYWLLQNAFSMGIGDTIADHDTMTKISETINKAKNEVNELIRAAQEK 1082
            AARKFLGHTQWLVNYWLLQNAFS+GIGDTIAD  TM  I++TI+KAKN V  LI+ AQ+K
Sbjct: 659  AARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDK 718

Query: 1083 QLEAEPGRTMMESFENRVNQVLNKARDDAGSSAQKSLAESNNLKAMVTAGSKGSFINISQ 1262
             LE EPGRTMMESFEN+VNQVLN ARD+AGSSAQKSL+ESNNLKAMVTAGSKGSFINISQ
Sbjct: 719  SLEPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQ 778

Query: 1263 MTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLSPQEFFFHAMGG 1442
            MTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGL+PQEFFFHAMGG
Sbjct: 779  MTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGG 838

Query: 1443 REGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIES 1622
            REGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMD+VWIES
Sbjct: 839  REGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIES 898

Query: 1623 QPLESLKLKRMDFNDMYKYEIDQPNWNPNYMLPEAVEDLKTIREIRSVFDAEVQKLEADR 1802
            Q L+SLK+K+ +F+  +++E+D+ NWNPNYML E ++DLKTI+E+R VFDAEVQKLEADR
Sbjct: 899  QTLDSLKMKKSEFDKAFRFEMDEENWNPNYMLQEYIDDLKTIKELRDVFDAEVQKLEADR 958

Query: 1803 FQLGTEIATTGDNSWPLPVNIKRLVLNAQKTFRVDFRRPSDMHPMEIVEAVDKLQERLKV 1982
            +QL TEIAT+GD+SWPLPVN+KRL+ NAQKTF+VD RRPSDMHPME+VEAVDKLQERLKV
Sbjct: 959  YQLATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKV 1018

Query: 1983 VVGDDYLSLEAQKNATLFFNILLRSALASKRVLKEYRLTREAFDWVVGEIESRFLQSLVA 2162
            V G+D LS+EAQKNATLFFNILLRS  ASKRVLKE+RLTREAF+WV+GEIESRFLQSLVA
Sbjct: 1019 VPGEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLVA 1078

Query: 2163 AGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVF 2342
             GEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVF
Sbjct: 1079 PGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVF 1138

Query: 2343 LKSGVSKTKEKAKNVQCALEYTTLRSVTQATEVWYDPDPMSTIIEEDVEFVKSYYEMPDE 2522
            LK GV+ TKE+AKNVQCALEYTTLRSVT+ATEVWYDPDPM TIIEEDVEFVKSYYEMPDE
Sbjct: 1139 LKPGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVEFVKSYYEMPDE 1198

Query: 2523 EIDPDKISPWLLRIELNREMMVDKKLSMADIAEKINLEFDDDLTCIFNDDNAEKLILRIR 2702
            +I P+KISPWLLRIELNREMMVDKKLSMA +AEKIN EFDDDLTCIFNDDNA+KLILRIR
Sbjct: 1199 DIAPEKISPWLLRIELNREMMVDKKLSMAAVAEKINQEFDDDLTCIFNDDNADKLILRIR 1258

Query: 2703 IMNDEAPKGEMNDESSEDDVFLKKIEGNMLTEMALRGIPDINKVFIKNGKVNKFDENEGF 2882
            IMNDEAPKGE+NDES+EDDVFLKKIE NMLTEMALRGIPDINKVFIK GK  K+D+NEGF
Sbjct: 1259 IMNDEAPKGELNDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKKGKTTKYDDNEGF 1318

Query: 2883 KAENEWMLDTEGVNLLAVICHEDVDARRTTSNHLIEVIEVLGIEAVRKALLDELRVVISF 3062
            K+E+EWMLDTEGVNLLAV+CHEDVDARRTTSNHLIE+IEVLGIEAVR+ALLDELRVVISF
Sbjct: 1319 KSEDEWMLDTEGVNLLAVMCHEDVDARRTTSNHLIEIIEVLGIEAVRRALLDELRVVISF 1378

Query: 3063 DGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAET 3242
            DGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAV+AE+
Sbjct: 1379 DGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVFAES 1438

Query: 3243 DYLRGVTENIMLGQLAPIGTGDCALYMNEEMLKQAIEIPLPSYMEGGLEFGMTPGRSPM- 3419
            DYLRGVTENIMLGQLAPIGTGDC+LY+N+EMLK AIE+ LPSYME GLEFGMTP RSP+ 
Sbjct: 1439 DYLRGVTENIMLGQLAPIGTGDCSLYLNDEMLKNAIELQLPSYME-GLEFGMTPARSPVS 1497

Query: 3420 GTPYHDGMMSPNYMLSPNLRLSPVSDAQFSPYVGGVAF 3533
            GTPYHDGMMSP Y+ SPNLRLSPV+DAQFSPYVGG+AF
Sbjct: 1498 GTPYHDGMMSPGYLFSPNLRLSPVTDAQFSPYVGGMAF 1535


>ref|XP_006467027.1| PREDICTED: DNA-directed RNA polymerase II subunit 1-like isoform X1
            [Citrus sinensis] gi|568825318|ref|XP_006467028.1|
            PREDICTED: DNA-directed RNA polymerase II subunit 1-like
            isoform X2 [Citrus sinensis]
          Length = 1860

 Score = 2143 bits (5553), Expect = 0.0
 Identities = 1052/1178 (89%), Positives = 1125/1178 (95%), Gaps = 1/1178 (0%)
 Frame = +3

Query: 3    ARTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYI 182
            ARTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYI
Sbjct: 359  ARTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYI 418

Query: 183  IRDDGQRLDLRYLKKSSDQHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPY 362
            IRDDGQRLDLRYLKKSSD HLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPY
Sbjct: 419  IRDDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPY 478

Query: 363  STFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQANRPVMGIVQ 542
            STFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQ+NRPVMGIVQ
Sbjct: 479  STFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQ 538

Query: 543  DTLLGCRKITKRDTFIDKDVFMNILMWWEDFDGKVPAPTILKPKPLWTGKQVFNLIIPRQ 722
            DTLLGCRKITKRDTFI+KDVFMNILMWWEDFDGKVP PTILKP+PLWTGKQVFNLIIP+Q
Sbjct: 539  DTLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQ 598

Query: 723  INLLRYSAWHQEGEKGFITPGDTQVRIEKGELLSGTLCKKTLGSSSGSLIHVIWEEVGPD 902
            INL R +AWH + +KG +T GDT VRIEKGELLSGTLCKKTLG+S+GSLIHVIWEEVGPD
Sbjct: 599  INLFRTAAWHADNDKGILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPD 658

Query: 903  AARKFLGHTQWLVNYWLLQNAFSMGIGDTIADHDTMTKISETINKAKNEVNELIRAAQEK 1082
            AARKFLGHTQWLVNYWLLQNAFS+GIGDTIAD  TM  I++TI+KAKN V  LI+ AQ+K
Sbjct: 659  AARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDK 718

Query: 1083 QLEAEPGRTMMESFENRVNQVLNKARDDAGSSAQKSLAESNNLKAMVTAGSKGSFINISQ 1262
             LE EPGRTMMESFEN+VNQVLN ARD+AGSSAQKSL+ESNNLKAMVTAGSKGSFINISQ
Sbjct: 719  SLEPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQ 778

Query: 1263 MTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLSPQEFFFHAMGG 1442
            MTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGL+PQEFFFHAMGG
Sbjct: 779  MTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGG 838

Query: 1443 REGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIES 1622
            REGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMD+VWIES
Sbjct: 839  REGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIES 898

Query: 1623 QPLESLKLKRMDFNDMYKYEIDQPNWNPNYMLPEAVEDLKTIREIRSVFDAEVQKLEADR 1802
            Q L+SLK+K+ +F+  +++E+D+ NWNPNYML E ++DLKTI+E+R VFDAEVQKLEADR
Sbjct: 899  QTLDSLKMKKSEFDKAFRFEMDEENWNPNYMLQEYIDDLKTIKELRDVFDAEVQKLEADR 958

Query: 1803 FQLGTEIATTGDNSWPLPVNIKRLVLNAQKTFRVDFRRPSDMHPMEIVEAVDKLQERLKV 1982
            +QL TEIAT+GD+SWPLPVN+KRL+ NAQKTF+VD RRPSDMHPME+VEAVDKLQERLKV
Sbjct: 959  YQLATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKV 1018

Query: 1983 VVGDDYLSLEAQKNATLFFNILLRSALASKRVLKEYRLTREAFDWVVGEIESRFLQSLVA 2162
            V G+D LS+EAQKNATLFFNILLRS  ASKRVLKE+RLTREAF+WV+GEIESRFLQSLVA
Sbjct: 1019 VPGEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLVA 1078

Query: 2163 AGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVF 2342
             GEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVF
Sbjct: 1079 PGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVF 1138

Query: 2343 LKSGVSKTKEKAKNVQCALEYTTLRSVTQATEVWYDPDPMSTIIEEDVEFVKSYYEMPDE 2522
            LK GV+ TKE+AKNVQCALEYTTLRSVT+ATEVWYDPDPM TIIEEDVEFVKSYYEMPDE
Sbjct: 1139 LKPGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVEFVKSYYEMPDE 1198

Query: 2523 EIDPDKISPWLLRIELNREMMVDKKLSMADIAEKINLEFDDDLTCIFNDDNAEKLILRIR 2702
            +I P+KISPWLLRIELNREMMVDKKLSMA +AEKIN EFDDDLTCIFNDDNA+KLILRIR
Sbjct: 1199 DIAPEKISPWLLRIELNREMMVDKKLSMAAVAEKINQEFDDDLTCIFNDDNADKLILRIR 1258

Query: 2703 IMNDEAPKGEMNDESSEDDVFLKKIEGNMLTEMALRGIPDINKVFIKNGKVNKFDENEGF 2882
            IMNDEAPKGE+NDES+EDDVFLKKIE NMLTEMALRGIPDINKVFIK GK  K+D+NEGF
Sbjct: 1259 IMNDEAPKGELNDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKKGKTTKYDDNEGF 1318

Query: 2883 KAENEWMLDTEGVNLLAVICHEDVDARRTTSNHLIEVIEVLGIEAVRKALLDELRVVISF 3062
            K+E+EWMLDTEGVNLLAV+CHEDVDARRTTSNHLIE+IEVLGIEAVR+ALLDELRVVISF
Sbjct: 1319 KSEDEWMLDTEGVNLLAVMCHEDVDARRTTSNHLIEIIEVLGIEAVRRALLDELRVVISF 1378

Query: 3063 DGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAET 3242
            DGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAV+AE+
Sbjct: 1379 DGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVFAES 1438

Query: 3243 DYLRGVTENIMLGQLAPIGTGDCALYMNEEMLKQAIEIPLPSYMEGGLEFGMTPGRSPM- 3419
            DYLRGVTENIMLGQLAPIGTGDC+LY+N+EMLK AIE+ LPSYME GLEFGMTP RSP+ 
Sbjct: 1439 DYLRGVTENIMLGQLAPIGTGDCSLYLNDEMLKNAIELQLPSYME-GLEFGMTPARSPVS 1497

Query: 3420 GTPYHDGMMSPNYMLSPNLRLSPVSDAQFSPYVGGVAF 3533
            GTPYHDGMMSP Y+ SPNLRLSPV+DAQFSPYVGG+AF
Sbjct: 1498 GTPYHDGMMSPGYLFSPNLRLSPVTDAQFSPYVGGMAF 1535


>ref|XP_006425357.1| hypothetical protein CICLE_v10024686mg [Citrus clementina]
            gi|557527347|gb|ESR38597.1| hypothetical protein
            CICLE_v10024686mg [Citrus clementina]
          Length = 1860

 Score = 2143 bits (5553), Expect = 0.0
 Identities = 1052/1178 (89%), Positives = 1125/1178 (95%), Gaps = 1/1178 (0%)
 Frame = +3

Query: 3    ARTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYI 182
            ARTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYI
Sbjct: 359  ARTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYI 418

Query: 183  IRDDGQRLDLRYLKKSSDQHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPY 362
            IRDDGQRLDLRYLKKSSD HLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPY
Sbjct: 419  IRDDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPY 478

Query: 363  STFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQANRPVMGIVQ 542
            STFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQ+NRPVMGIVQ
Sbjct: 479  STFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQ 538

Query: 543  DTLLGCRKITKRDTFIDKDVFMNILMWWEDFDGKVPAPTILKPKPLWTGKQVFNLIIPRQ 722
            DTLLGCRKITKRDTFI+KDVFMNILMWWEDFDGKVP PTILKP+PLWTGKQVFNLIIP+Q
Sbjct: 539  DTLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQ 598

Query: 723  INLLRYSAWHQEGEKGFITPGDTQVRIEKGELLSGTLCKKTLGSSSGSLIHVIWEEVGPD 902
            INL R +AWH + +KG +T GDT VRIEKGELLSGTLCKKTLG+S+GSLIHVIWEEVGPD
Sbjct: 599  INLFRTAAWHADNDKGILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPD 658

Query: 903  AARKFLGHTQWLVNYWLLQNAFSMGIGDTIADHDTMTKISETINKAKNEVNELIRAAQEK 1082
            AARKFLGHTQWLVNYWLLQNAFS+GIGDTIAD  TM  I++TI+KAKN V  LI+ AQ+K
Sbjct: 659  AARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDK 718

Query: 1083 QLEAEPGRTMMESFENRVNQVLNKARDDAGSSAQKSLAESNNLKAMVTAGSKGSFINISQ 1262
             LE EPGRTMMESFEN+VNQVLN ARD+AGSSAQKSL+ESNNLKAMVTAGSKGSFINISQ
Sbjct: 719  SLEPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQ 778

Query: 1263 MTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLSPQEFFFHAMGG 1442
            MTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGL+PQEFFFHAMGG
Sbjct: 779  MTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGG 838

Query: 1443 REGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIES 1622
            REGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMD+VWIES
Sbjct: 839  REGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIES 898

Query: 1623 QPLESLKLKRMDFNDMYKYEIDQPNWNPNYMLPEAVEDLKTIREIRSVFDAEVQKLEADR 1802
            Q L+SLK+K+ +F+  +++E+D+ NWNPNYML E ++DLKTI+E+R VFDAEVQKLEADR
Sbjct: 899  QTLDSLKMKKSEFDKAFRFEMDEENWNPNYMLQEYIDDLKTIKELRDVFDAEVQKLEADR 958

Query: 1803 FQLGTEIATTGDNSWPLPVNIKRLVLNAQKTFRVDFRRPSDMHPMEIVEAVDKLQERLKV 1982
            +QL TEIAT+GD+SWPLPVN+KRL+ NAQKTF+VD RRPSDMHPME+VEAVDKLQERLKV
Sbjct: 959  YQLATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKV 1018

Query: 1983 VVGDDYLSLEAQKNATLFFNILLRSALASKRVLKEYRLTREAFDWVVGEIESRFLQSLVA 2162
            V G+D LS+EAQKNATLFFNILLRS  ASKRVLKE+RLTREAF+WV+GEIESRFLQSLVA
Sbjct: 1019 VPGEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLVA 1078

Query: 2163 AGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVF 2342
             GEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVF
Sbjct: 1079 PGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVF 1138

Query: 2343 LKSGVSKTKEKAKNVQCALEYTTLRSVTQATEVWYDPDPMSTIIEEDVEFVKSYYEMPDE 2522
            LK GV+ TKE+AKNVQCALEYTTLRSVT+ATEVWYDPDPM TIIEEDVEFVKSYYEMPDE
Sbjct: 1139 LKPGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVEFVKSYYEMPDE 1198

Query: 2523 EIDPDKISPWLLRIELNREMMVDKKLSMADIAEKINLEFDDDLTCIFNDDNAEKLILRIR 2702
            +I P+KISPWLLRIELNREMMVDKKLSMA +AEKIN EFDDDLTCIFNDDNA+KLILRIR
Sbjct: 1199 DIAPEKISPWLLRIELNREMMVDKKLSMAAVAEKINQEFDDDLTCIFNDDNADKLILRIR 1258

Query: 2703 IMNDEAPKGEMNDESSEDDVFLKKIEGNMLTEMALRGIPDINKVFIKNGKVNKFDENEGF 2882
            IMNDEAPKGE+NDES+EDDVFLKKIE NMLTEMALRGIPDINKVFIK GK  K+D+NEGF
Sbjct: 1259 IMNDEAPKGELNDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKKGKTTKYDDNEGF 1318

Query: 2883 KAENEWMLDTEGVNLLAVICHEDVDARRTTSNHLIEVIEVLGIEAVRKALLDELRVVISF 3062
            K+E+EWMLDTEGVNLLAV+CHEDVDARRTTSNHLIE+IEVLGIEAVR+ALLDELRVVISF
Sbjct: 1319 KSEDEWMLDTEGVNLLAVMCHEDVDARRTTSNHLIEIIEVLGIEAVRRALLDELRVVISF 1378

Query: 3063 DGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAET 3242
            DGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAV+AE+
Sbjct: 1379 DGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVFAES 1438

Query: 3243 DYLRGVTENIMLGQLAPIGTGDCALYMNEEMLKQAIEIPLPSYMEGGLEFGMTPGRSPM- 3419
            DYLRGVTENIMLGQLAPIGTGDC+LY+N+EMLK AIE+ LPSYME GLEFGMTP RSP+ 
Sbjct: 1439 DYLRGVTENIMLGQLAPIGTGDCSLYLNDEMLKNAIELQLPSYME-GLEFGMTPARSPVS 1497

Query: 3420 GTPYHDGMMSPNYMLSPNLRLSPVSDAQFSPYVGGVAF 3533
            GTPYHDGMMSP Y+ SPNLRLSPV+DAQFSPYVGG+AF
Sbjct: 1498 GTPYHDGMMSPGYLFSPNLRLSPVTDAQFSPYVGGMAF 1535


>ref|XP_004287766.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like [Fragaria
            vesca subsp. vesca]
          Length = 1842

 Score = 2142 bits (5549), Expect = 0.0
 Identities = 1050/1178 (89%), Positives = 1121/1178 (95%), Gaps = 1/1178 (0%)
 Frame = +3

Query: 3    ARTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYI 182
            ARTVITPDP INIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYI
Sbjct: 357  ARTVITPDPNINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYI 416

Query: 183  IRDDGQRLDLRYLKKSSDQHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPY 362
            IRDDGQRLDLRYLKKSSD HLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPY
Sbjct: 417  IRDDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPY 476

Query: 363  STFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQANRPVMGIVQ 542
            STFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQ+NRPVMGIVQ
Sbjct: 477  STFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQ 536

Query: 543  DTLLGCRKITKRDTFIDKDVFMNILMWWEDFDGKVPAPTILKPKPLWTGKQVFNLIIPRQ 722
            DTLLGCRKITKRDTFI+KDVFMNILMWWEDFDGKVPAP ILKP+PLWTGKQVFNLIIP+Q
Sbjct: 537  DTLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPAPAILKPRPLWTGKQVFNLIIPKQ 596

Query: 723  INLLRYSAWHQEGEKGFITPGDTQVRIEKGELLSGTLCKKTLGSSSGSLIHVIWEEVGPD 902
            INL R SAWH E E G ITPGDT VRIEKGELLSGTLCKK LG+S+GSLIHVIWEEVGPD
Sbjct: 597  INLQRTSAWHSESETGNITPGDTHVRIEKGELLSGTLCKKALGTSTGSLIHVIWEEVGPD 656

Query: 903  AARKFLGHTQWLVNYWLLQNAFSMGIGDTIADHDTMTKISETINKAKNEVNELIRAAQEK 1082
            AARKFLGHTQWLVNYWLLQNAFS+GIGDTIAD  TM KI+ETI+KAKNEV ELI  AQ K
Sbjct: 657  AARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAATMEKINETISKAKNEVKELISKAQSK 716

Query: 1083 QLEAEPGRTMMESFENRVNQVLNKARDDAGSSAQKSLAESNNLKAMVTAGSKGSFINISQ 1262
             LE EPGRTMM+SFEN+VNQVLN+ARDDAGSSAQKSL+ESNNLKAMVTAGSKGSFINISQ
Sbjct: 717  SLEPEPGRTMMDSFENKVNQVLNRARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQ 776

Query: 1263 MTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLSPQEFFFHAMGG 1442
            MTACVGQQNVEGKRIP+GF+DRTLPHFTKDDYGPESRGFVENSYLRGL+PQEFFFHAMGG
Sbjct: 777  MTACVGQQNVEGKRIPYGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGG 836

Query: 1443 REGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIES 1622
            REGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIES
Sbjct: 837  REGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIES 896

Query: 1623 QPLESLKLKRMDFNDMYKYEIDQPNWNPNYMLPEAVEDLKTIREIRSVFDAEVQKLEADR 1802
            Q L+SLK+K+ +F+  + Y  D  NWNP+YMLPE VEDLKTIRE R+VFDAEV KLE DR
Sbjct: 897  QKLDSLKMKKKEFDKTFAYVFDDENWNPDYMLPEHVEDLKTIREFRNVFDAEVSKLETDR 956

Query: 1803 FQLGTEIATTGDNSWPLPVNIKRLVLNAQKTFRVDFRRPSDMHPMEIVEAVDKLQERLKV 1982
             QLGTEIA TGDNSWPLPVN+KRL+ NAQKTF++DFRR SDMHPMEIVEA+DKLQERL+V
Sbjct: 957  LQLGTEIAVTGDNSWPLPVNLKRLIWNAQKTFKIDFRRTSDMHPMEIVEAIDKLQERLRV 1016

Query: 1983 VVGDDYLSLEAQKNATLFFNILLRSALASKRVLKEYRLTREAFDWVVGEIESRFLQSLVA 2162
            V GDD LS+EAQKNATLFFNILLRS  ASKRVL+EYRLTREAF+WV+GEIESRFLQSLVA
Sbjct: 1017 VPGDDLLSVEAQKNATLFFNILLRSTFASKRVLEEYRLTREAFEWVIGEIESRFLQSLVA 1076

Query: 2163 AGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVF 2342
             GEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAK+IKTPSLSV+
Sbjct: 1077 PGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKRIKTPSLSVY 1136

Query: 2343 LKSGVSKTKEKAKNVQCALEYTTLRSVTQATEVWYDPDPMSTIIEEDVEFVKSYYEMPDE 2522
            LK   +KTKE+AKNVQCALEYTTLRSVTQATEVWYDPDPMST+IEED++FV+SYYEMPDE
Sbjct: 1137 LKPEANKTKERAKNVQCALEYTTLRSVTQATEVWYDPDPMSTLIEEDLDFVRSYYEMPDE 1196

Query: 2523 EIDPDKISPWLLRIELNREMMVDKKLSMADIAEKINLEFDDDLTCIFNDDNAEKLILRIR 2702
            E++PDKISPWLLRIELNREMMVDKKLSMADIAEKINLEFD DLTCIFNDDNAEKLILRIR
Sbjct: 1197 EVNPDKISPWLLRIELNREMMVDKKLSMADIAEKINLEFDGDLTCIFNDDNAEKLILRIR 1256

Query: 2703 IMNDEAPKGEMNDESSEDDVFLKKIEGNMLTEMALRGIPDINKVFIKNGKVNKFDENEGF 2882
            IMN+E PKG+  DES+EDDVFLKKIE NMLTEMALRGIPDINKVFIK+GKVNKFD+NEGF
Sbjct: 1257 IMNEETPKGDSQDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKHGKVNKFDQNEGF 1316

Query: 2883 KAENEWMLDTEGVNLLAVICHEDVDARRTTSNHLIEVIEVLGIEAVRKALLDELRVVISF 3062
            KAE EWMLDTEGVNLLAV+CH+DVDA+RTTSNHLIE+IEVLGIEAVR++LLDELRVVISF
Sbjct: 1317 KAEQEWMLDTEGVNLLAVLCHDDVDAKRTTSNHLIEIIEVLGIEAVRRSLLDELRVVISF 1376

Query: 3063 DGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAET 3242
            DGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDA+V+AET
Sbjct: 1377 DGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDASVFAET 1436

Query: 3243 DYLRGVTENIMLGQLAPIGTGDCALYMNEEMLKQAIEIPLPSYMEGGLEFGMTPGRSPM- 3419
            D+LRGVTENIMLGQLAPIGTGDCALY+N+EMLK AIE+ LPSY++ GL+FGMTP RSP+ 
Sbjct: 1437 DHLRGVTENIMLGQLAPIGTGDCALYLNDEMLKNAIELQLPSYVD-GLDFGMTPSRSPVS 1495

Query: 3420 GTPYHDGMMSPNYMLSPNLRLSPVSDAQFSPYVGGVAF 3533
            GTP+ DGMMSPNY+LSPN+R+SP+SDAQFSPYVGG+AF
Sbjct: 1496 GTPFRDGMMSPNYLLSPNMRMSPISDAQFSPYVGGMAF 1533


>ref|XP_004972809.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like isoform
            X1 [Setaria italica]
          Length = 1852

 Score = 2139 bits (5543), Expect = 0.0
 Identities = 1046/1179 (88%), Positives = 1127/1179 (95%), Gaps = 2/1179 (0%)
 Frame = +3

Query: 3    ARTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYI 182
            ARTVITPDP INID+LGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYI
Sbjct: 359  ARTVITPDPNINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYI 418

Query: 183  IRDDGQRLDLRYLKKSSDQHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPY 362
            IR+DGQRLDLRY+KKSSDQHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPY
Sbjct: 419  IREDGQRLDLRYVKKSSDQHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPY 478

Query: 363  STFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQANRPVMGIVQ 542
            STFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQ+NRPVMGIVQ
Sbjct: 479  STFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQ 538

Query: 543  DTLLGCRKITKRDTFIDKDVFMNILMWWEDFDGKVPAPTILKPKPLWTGKQVFNLIIPRQ 722
            DTLLGCRKITKRDT I+KDVFMN LMWW+DFDGK+PAP ILKP+P+WTGKQVFNLIIP+Q
Sbjct: 539  DTLLGCRKITKRDTLIEKDVFMNTLMWWQDFDGKIPAPAILKPRPIWTGKQVFNLIIPKQ 598

Query: 723  INLLRYSAWHQEGEKGFITPGDTQVRIEKGELLSGTLCKKTLGSSSGSLIHVIWEEVGPD 902
            INL+R+SAWH E E GFITPGDT VRIEKGELLSGTLCKK+LG+ SGSLIHVIWEEVGPD
Sbjct: 599  INLIRFSAWHSETETGFITPGDTMVRIEKGELLSGTLCKKSLGTGSGSLIHVIWEEVGPD 658

Query: 903  AARKFLGHTQWLVNYWLLQNAFSMGIGDTIADHDTMTKISETINKAKNEVNELIRAAQEK 1082
            AARKFLGHTQWLVNYWLLQ  FS+GIGDTIAD  TM KI+ETI+KAKNEV ELI+ AQ+K
Sbjct: 659  AARKFLGHTQWLVNYWLLQQGFSIGIGDTIADAATMEKINETISKAKNEVKELIKQAQDK 718

Query: 1083 QLEAEPGRTMMESFENRVNQVLNKARDDAGSSAQKSLAESNNLKAMVTAGSKGSFINISQ 1262
             LEAEPGRTMMESFENRVNQVLNKARDDAGSSAQKSL+ESNNLKAMVTAGSKGSFINISQ
Sbjct: 719  HLEAEPGRTMMESFENRVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQ 778

Query: 1263 MTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLSPQEFFFHAMGG 1442
            MTACVGQQNVEGKRIPFGF+DRTLPHFTKDDYGPESRGFVENSYLRGL+PQEFFFHAMGG
Sbjct: 779  MTACVGQQNVEGKRIPFGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGG 838

Query: 1443 REGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIES 1622
            REGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIES
Sbjct: 839  REGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIES 898

Query: 1623 QPLESLKLKRMDFNDMYKYEIDQPNWNPNYMLPEAVEDLKTIREIRSVFDAEVQKLEADR 1802
            Q L+SLK+K+ +F+++++YE+D  NW PNYMLPE V+DLKTIRE R+VF+AEVQKLEADR
Sbjct: 899  QKLDSLKMKKGEFDNVFRYELDDENWRPNYMLPEHVDDLKTIREFRNVFEAEVQKLEADR 958

Query: 1803 FQLGTEIATTGDNSWPLPVNIKRLVLNAQKTFRVDFRRPSDMHPMEIVEAVDKLQERLKV 1982
            FQLGTEI TTGDNSWP+PVN+KRL+ NAQKTF++DFRRPSDMHPMEIVEA+DKLQERLKV
Sbjct: 959  FQLGTEITTTGDNSWPMPVNLKRLIWNAQKTFKIDFRRPSDMHPMEIVEAIDKLQERLKV 1018

Query: 1983 VVGDDYLSLEAQKNATLFFNILLRSALASKRVLKEYRLTREAFDWVVGEIESRFLQSLVA 2162
            V GDD +S+EAQKNATLFFNILLRS  ASKRVLKEYRLT+EAF+WV+GEIESRFLQSLVA
Sbjct: 1019 VPGDDAMSIEAQKNATLFFNILLRSTFASKRVLKEYRLTKEAFEWVIGEIESRFLQSLVA 1078

Query: 2163 AGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVF 2342
             GEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSV+
Sbjct: 1079 PGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVY 1138

Query: 2343 LKSGVSKTKEKAKNVQCALEYTTLRSVTQATEVWYDPDPMSTIIEEDVEFVKSYYEMPDE 2522
            LK  V+K KE AKNVQCALEYTTLRSVT ATE+WYDPDP+ TIIEEDVEFV+SYYEMPDE
Sbjct: 1139 LKPEVNKKKELAKNVQCALEYTTLRSVTHATEIWYDPDPLGTIIEEDVEFVRSYYEMPDE 1198

Query: 2523 EIDPDKISPWLLRIELNREMMVDKKLSMADIAEKINLEFDDDLTCIFNDDNAEKLILRIR 2702
            +IDPDKISPWLLRIELNREMM+DKKLSMADIAEKIN EFDDDL+CIFNDDNA+KLILRIR
Sbjct: 1199 DIDPDKISPWLLRIELNREMMIDKKLSMADIAEKINREFDDDLSCIFNDDNADKLILRIR 1258

Query: 2703 IMNDEAPKGEMNDESSEDDVFLKKIEGNMLTEMALRGIPDINKVFIKNGKVNKFDENEGF 2882
            I ND+APKGE+ DES+EDDVFLKKIEGNMLTEMALRGIPDINKVFIK+GKVNKFD++EGF
Sbjct: 1259 ITNDDAPKGEIQDESAEDDVFLKKIEGNMLTEMALRGIPDINKVFIKHGKVNKFDQSEGF 1318

Query: 2883 KAENEWMLDTEGVNLLAVICHEDVDARRTTSNHLIEVIEVLGIEAVRKALLDELRVVISF 3062
            KA+NEWMLDTEGVNLLAV+CHEDVDA RTTSNHLIEVIEVLGIEAVR++LLDELRVVISF
Sbjct: 1319 KADNEWMLDTEGVNLLAVMCHEDVDATRTTSNHLIEVIEVLGIEAVRRSLLDELRVVISF 1378

Query: 3063 DGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAET 3242
            DGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGP+MRCSFEETVDILLDAAVYAE 
Sbjct: 1379 DGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPLMRCSFEETVDILLDAAVYAEA 1438

Query: 3243 DYLRGVTENIMLGQLAPIGTGDCALYMNEEMLKQAIEIPLPSYMEGGLEFGMTPGRSPM- 3419
            D LRGVTENIMLGQLAPIGTG CALY+N++ML+QAIE+ LPSY+E GL+FGMTP RSP+ 
Sbjct: 1439 DLLRGVTENIMLGQLAPIGTGGCALYLNDQMLQQAIELQLPSYVE-GLDFGMTPARSPIS 1497

Query: 3420 GTPYHDGMMSPNYMLSPNLRLSPV-SDAQFSPYVGGVAF 3533
            GTPYH+GMMSP+Y+LSPN+R SP+ +DA FSPYVG +AF
Sbjct: 1498 GTPYHEGMMSPSYLLSPNIRASPINTDASFSPYVGHMAF 1536


>ref|XP_004972810.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like isoform
            X2 [Setaria italica]
          Length = 1852

 Score = 2137 bits (5538), Expect = 0.0
 Identities = 1045/1179 (88%), Positives = 1126/1179 (95%), Gaps = 2/1179 (0%)
 Frame = +3

Query: 3    ARTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYI 182
            ARTVITPDP INID+LGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYI
Sbjct: 359  ARTVITPDPNINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYI 418

Query: 183  IRDDGQRLDLRYLKKSSDQHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPY 362
            IR+DGQRLDLRY+KKSSDQHL+LGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPY
Sbjct: 419  IREDGQRLDLRYVKKSSDQHLDLGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPY 478

Query: 363  STFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQANRPVMGIVQ 542
            STFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQ+NRPVMGIVQ
Sbjct: 479  STFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQ 538

Query: 543  DTLLGCRKITKRDTFIDKDVFMNILMWWEDFDGKVPAPTILKPKPLWTGKQVFNLIIPRQ 722
            DTLLGCRKITKRDT I+KDVFMNILMWW+DFDGK+PAP ILKP+P+WTGKQVFNLIIP+Q
Sbjct: 539  DTLLGCRKITKRDTLIEKDVFMNILMWWQDFDGKIPAPAILKPRPIWTGKQVFNLIIPKQ 598

Query: 723  INLLRYSAWHQEGEKGFITPGDTQVRIEKGELLSGTLCKKTLGSSSGSLIHVIWEEVGPD 902
            INL+R+SAWH E E GFITPGDT VRIEKGELLSGTLCKK+LG+ SGSLIHVIWEEVGPD
Sbjct: 599  INLIRFSAWHSETETGFITPGDTMVRIEKGELLSGTLCKKSLGTGSGSLIHVIWEEVGPD 658

Query: 903  AARKFLGHTQWLVNYWLLQNAFSMGIGDTIADHDTMTKISETINKAKNEVNELIRAAQEK 1082
            AARKFLGHTQWLVNYWLLQ  FS+GIGDTIAD  TM KI+ETI+KAKNEV ELI+ A E 
Sbjct: 659  AARKFLGHTQWLVNYWLLQQGFSIGIGDTIADAATMEKINETISKAKNEVKELIKQAHEN 718

Query: 1083 QLEAEPGRTMMESFENRVNQVLNKARDDAGSSAQKSLAESNNLKAMVTAGSKGSFINISQ 1262
             LEAEPGRTMMESFENRVNQVLNKARDDAGSSAQKSL+ESNNLKAMVTAGSKGSFINISQ
Sbjct: 719  HLEAEPGRTMMESFENRVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQ 778

Query: 1263 MTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLSPQEFFFHAMGG 1442
            MTACVGQQNVEGKRIPFGF+DRTLPHFTKDDYGPESRGFVENSYLRGL+PQEFFFHAMGG
Sbjct: 779  MTACVGQQNVEGKRIPFGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGG 838

Query: 1443 REGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIES 1622
            REGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIES
Sbjct: 839  REGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIES 898

Query: 1623 QPLESLKLKRMDFNDMYKYEIDQPNWNPNYMLPEAVEDLKTIREIRSVFDAEVQKLEADR 1802
            Q L+SLK+K+ +F+++++YE+D  NW PNYMLPE V+DLKTIRE R+VF+AEVQKLEADR
Sbjct: 899  QKLDSLKMKKGEFDNVFRYELDDENWRPNYMLPEHVDDLKTIREFRNVFEAEVQKLEADR 958

Query: 1803 FQLGTEIATTGDNSWPLPVNIKRLVLNAQKTFRVDFRRPSDMHPMEIVEAVDKLQERLKV 1982
            FQLGTEI TTGDNSWP+PVN+KRL+ NAQKTF++DFRRPSDMHPMEIVEA+DKLQERLKV
Sbjct: 959  FQLGTEITTTGDNSWPMPVNLKRLIWNAQKTFKIDFRRPSDMHPMEIVEAIDKLQERLKV 1018

Query: 1983 VVGDDYLSLEAQKNATLFFNILLRSALASKRVLKEYRLTREAFDWVVGEIESRFLQSLVA 2162
            V GDD +S+EAQKNATLFFNILLRS  ASKRVLKEYRLT+EAF+WV+GEIESRFLQSLVA
Sbjct: 1019 VPGDDAMSIEAQKNATLFFNILLRSTFASKRVLKEYRLTKEAFEWVIGEIESRFLQSLVA 1078

Query: 2163 AGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVF 2342
             GEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSV+
Sbjct: 1079 PGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVY 1138

Query: 2343 LKSGVSKTKEKAKNVQCALEYTTLRSVTQATEVWYDPDPMSTIIEEDVEFVKSYYEMPDE 2522
            LK  V+K KE AKNVQCALEYTTLRSVT ATE+WYDPDP+ TIIEEDVEFV+SYYEMPDE
Sbjct: 1139 LKPEVNKKKELAKNVQCALEYTTLRSVTHATEIWYDPDPLGTIIEEDVEFVRSYYEMPDE 1198

Query: 2523 EIDPDKISPWLLRIELNREMMVDKKLSMADIAEKINLEFDDDLTCIFNDDNAEKLILRIR 2702
            +IDPDKISPWLLRIELNREMM+DKKLSMADIAEKIN EFDDDL+CIFNDDNA+KLILRIR
Sbjct: 1199 DIDPDKISPWLLRIELNREMMIDKKLSMADIAEKINREFDDDLSCIFNDDNADKLILRIR 1258

Query: 2703 IMNDEAPKGEMNDESSEDDVFLKKIEGNMLTEMALRGIPDINKVFIKNGKVNKFDENEGF 2882
            I ND+APKGE+ DES+EDDVFLKKIEGNMLTEMALRGIPDINKVFIK+GKVNKFD++EGF
Sbjct: 1259 ITNDDAPKGEIQDESAEDDVFLKKIEGNMLTEMALRGIPDINKVFIKHGKVNKFDQSEGF 1318

Query: 2883 KAENEWMLDTEGVNLLAVICHEDVDARRTTSNHLIEVIEVLGIEAVRKALLDELRVVISF 3062
            KA+NEWMLDTEGVNLLAV+CHEDVDA RTTSNHLIEVIEVLGIEAVR++LLDELRVVISF
Sbjct: 1319 KADNEWMLDTEGVNLLAVMCHEDVDATRTTSNHLIEVIEVLGIEAVRRSLLDELRVVISF 1378

Query: 3063 DGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAET 3242
            DGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGP+MRCSFEETVDILLDAAVYAE 
Sbjct: 1379 DGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPLMRCSFEETVDILLDAAVYAEA 1438

Query: 3243 DYLRGVTENIMLGQLAPIGTGDCALYMNEEMLKQAIEIPLPSYMEGGLEFGMTPGRSPM- 3419
            D LRGVTENIMLGQLAPIGTG CALY+N++ML+QAIE+ LPSY+E GL+FGMTP RSP+ 
Sbjct: 1439 DLLRGVTENIMLGQLAPIGTGGCALYLNDQMLQQAIELQLPSYVE-GLDFGMTPARSPIS 1497

Query: 3420 GTPYHDGMMSPNYMLSPNLRLSPV-SDAQFSPYVGGVAF 3533
            GTPYH+GMMSP+Y+LSPN+R SP+ +DA FSPYVG +AF
Sbjct: 1498 GTPYHEGMMSPSYLLSPNIRASPINTDASFSPYVGHMAF 1536


>ref|XP_006590737.1| PREDICTED: DNA-directed RNA polymerase II subunit 1-like [Glycine
            max]
          Length = 1827

 Score = 2136 bits (5535), Expect = 0.0
 Identities = 1052/1178 (89%), Positives = 1122/1178 (95%), Gaps = 1/1178 (0%)
 Frame = +3

Query: 3    ARTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYI 182
            ARTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYI
Sbjct: 359  ARTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYI 418

Query: 183  IRDDGQRLDLRYLKKSSDQHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPY 362
            IRDDGQRLDLRYLKKSSD HLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPY
Sbjct: 419  IRDDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPY 478

Query: 363  STFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQANRPVMGIVQ 542
            STFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQ+NRPVMGIVQ
Sbjct: 479  STFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQ 538

Query: 543  DTLLGCRKITKRDTFIDKDVFMNILMWWEDFDGKVPAPTILKPKPLWTGKQVFNLIIPRQ 722
            DTLLGCRKITKRDTFI KDVFMNILMWWEDFDGKVPAP ILKP+PLWTGKQVFNLIIP+Q
Sbjct: 539  DTLLGCRKITKRDTFITKDVFMNILMWWEDFDGKVPAPAILKPEPLWTGKQVFNLIIPKQ 598

Query: 723  INLLRYSAWHQEGEKGFITPGDTQVRIEKGELLSGTLCKKTLGSSSGSLIHVIWEEVGPD 902
            INL+RYS+WH E E+G ITPGDT VRIEKGELL+GTLCKKTLG+S+GSLIHVIWEEVGPD
Sbjct: 599  INLIRYSSWHSESERGSITPGDTMVRIEKGELLTGTLCKKTLGTSTGSLIHVIWEEVGPD 658

Query: 903  AARKFLGHTQWLVNYWLLQNAFSMGIGDTIADHDTMTKISETINKAKNEVNELIRAAQEK 1082
            AARKFLGHTQWLVNYWLLQNAFS+GIGDTIAD  TM  I++TI+ AK +V +LIR AQEK
Sbjct: 659  AARKFLGHTQWLVNYWLLQNAFSIGIGDTIADASTMETINQTISAAKEKVKQLIREAQEK 718

Query: 1083 QLEAEPGRTMMESFENRVNQVLNKARDDAGSSAQKSLAESNNLKAMVTAGSKGSFINISQ 1262
            +LEAEPGRTMM+SFENRVNQ LN+ARDDAG+SAQKSL+ESNNLKAMVTAGSKGSFINISQ
Sbjct: 719  KLEAEPGRTMMDSFENRVNQTLNRARDDAGNSAQKSLSESNNLKAMVTAGSKGSFINISQ 778

Query: 1263 MTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLSPQEFFFHAMGG 1442
            MTACVGQQNVEGKRIP+GF+DRTLPHFTKDDYGPESRGFVENSYLRGL+PQEFFFHAMGG
Sbjct: 779  MTACVGQQNVEGKRIPYGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGG 838

Query: 1443 REGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIES 1622
            REGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIE+
Sbjct: 839  REGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIET 898

Query: 1623 QPLESLKLKRMDFNDMYKYEIDQPNWNPNYMLPEAVEDLKTIREIRSVFDAEVQKLEADR 1802
            Q L+SLK+K+ +F+ +++YE D  NW P YML E VEDLKTIRE R+VF+AEVQKLEADR
Sbjct: 899  QKLDSLKMKKTEFDRVFRYEFDDENWKPTYMLEEPVEDLKTIREFRNVFEAEVQKLEADR 958

Query: 1803 FQLGTEIATTGDNSWPLPVNIKRLVLNAQKTFRVDFRRPSDMHPMEIVEAVDKLQERLKV 1982
            +QL TEIATTGD+S PLPVN+KRL+ NAQKTF+VDFRRPSDMHPMEIVEA+DKLQERLKV
Sbjct: 959  YQLATEIATTGDSSLPLPVNLKRLIWNAQKTFKVDFRRPSDMHPMEIVEAIDKLQERLKV 1018

Query: 1983 VVGDDYLSLEAQKNATLFFNILLRSALASKRVLKEYRLTREAFDWVVGEIESRFLQSLVA 2162
            V G+D LS EAQKNATL FNILLRS  ASKRVL+EYRL+REAF+WVVGEIESRFLQSLVA
Sbjct: 1019 VPGEDLLSQEAQKNATLLFNILLRSTFASKRVLEEYRLSREAFEWVVGEIESRFLQSLVA 1078

Query: 2163 AGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVF 2342
            +GEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAK+IKTPSLSV+
Sbjct: 1079 SGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKRIKTPSLSVY 1138

Query: 2343 LKSGVSKTKEKAKNVQCALEYTTLRSVTQATEVWYDPDPMSTIIEEDVEFVKSYYEMPDE 2522
            L+S V KTKE+AK+VQCALEYTTLRSVTQATEVWYDPDPMSTIIEED +FVKSYYEMPDE
Sbjct: 1139 LRSDVGKTKERAKSVQCALEYTTLRSVTQATEVWYDPDPMSTIIEEDADFVKSYYEMPDE 1198

Query: 2523 EIDPDKISPWLLRIELNREMMVDKKLSMADIAEKINLEFDDDLTCIFNDDNAEKLILRIR 2702
            E+  +KISPWLLRIELNREMMVDKKLSMADIAEKINLEFDDDLTCIFNDDNAEKLILRIR
Sbjct: 1199 EVALEKISPWLLRIELNREMMVDKKLSMADIAEKINLEFDDDLTCIFNDDNAEKLILRIR 1258

Query: 2703 IMNDEAPKGEMNDESSEDDVFLKKIEGNMLTEMALRGIPDINKVFIKNGKVNKFDENEGF 2882
            IMNDEAPKGE+ DES+EDDVFLKKIE NMLTEM LRGIPDINKVFIKN KV KFDEN+GF
Sbjct: 1259 IMNDEAPKGEIQDESAEDDVFLKKIESNMLTEMTLRGIPDINKVFIKNTKVQKFDENQGF 1318

Query: 2883 KAENEWMLDTEGVNLLAVICHEDVDARRTTSNHLIEVIEVLGIEAVRKALLDELRVVISF 3062
            K   EWMLDTEGVNLLAV+CHEDVDA RTTSNHLIEVIEVLGIEAVR+ALLDELRVVISF
Sbjct: 1319 KPNEEWMLDTEGVNLLAVMCHEDVDATRTTSNHLIEVIEVLGIEAVRRALLDELRVVISF 1378

Query: 3063 DGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAET 3242
            DGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAET
Sbjct: 1379 DGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAET 1438

Query: 3243 DYLRGVTENIMLGQLAPIGTGDCALYMNEEMLKQAIEIPLPSYMEGGLEFGMTPGRSPM- 3419
            DYLRGVTENIMLGQLAPIGTG+CALY+N+EMLK AIE+ LPSYM+ GL+FGMTP RSP+ 
Sbjct: 1439 DYLRGVTENIMLGQLAPIGTGECALYLNDEMLKNAIELQLPSYMD-GLDFGMTPARSPIS 1497

Query: 3420 GTPYHDGMMSPNYMLSPNLRLSPVSDAQFSPYVGGVAF 3533
            GTPYH+G+MSP+Y+LSPNLRLSP SDAQFSPYVGG+AF
Sbjct: 1498 GTPYHEGLMSPSYLLSPNLRLSPTSDAQFSPYVGGMAF 1535


>ref|XP_004512182.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like [Cicer
            arietinum]
          Length = 1834

 Score = 2134 bits (5530), Expect = 0.0
 Identities = 1053/1178 (89%), Positives = 1121/1178 (95%), Gaps = 1/1178 (0%)
 Frame = +3

Query: 3    ARTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYI 182
            ARTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYI
Sbjct: 359  ARTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYI 418

Query: 183  IRDDGQRLDLRYLKKSSDQHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPY 362
            IRDDGQRLDLRYLKKSSD HLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPY
Sbjct: 419  IRDDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPY 478

Query: 363  STFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQANRPVMGIVQ 542
            STFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQ+NRPVMGIVQ
Sbjct: 479  STFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQ 538

Query: 543  DTLLGCRKITKRDTFIDKDVFMNILMWWEDFDGKVPAPTILKPKPLWTGKQVFNLIIPRQ 722
            D+LLGCRKITKRDTFI KDVFMNILMWWEDFDGKVP PTILKP+P+WTGKQVFNLIIP+Q
Sbjct: 539  DSLLGCRKITKRDTFISKDVFMNILMWWEDFDGKVPTPTILKPEPMWTGKQVFNLIIPKQ 598

Query: 723  INLLRYSAWHQEGEKGFITPGDTQVRIEKGELLSGTLCKKTLGSSSGSLIHVIWEEVGPD 902
            INL+RYS+WH E EKG ITPGDT VRIEKGELL+GTLCKKTLG+S+GSLIHVIWEEVGPD
Sbjct: 599  INLIRYSSWHNENEKGPITPGDTMVRIEKGELLTGTLCKKTLGTSTGSLIHVIWEEVGPD 658

Query: 903  AARKFLGHTQWLVNYWLLQNAFSMGIGDTIADHDTMTKISETINKAKNEVNELIRAAQEK 1082
            AARKFLGHTQWLVNYWLLQNAFS+GIGDTIAD  TM  I++TI++AK +V +LIR AQEK
Sbjct: 659  AARKFLGHTQWLVNYWLLQNAFSIGIGDTIADASTMETINQTISQAKEKVKQLIREAQEK 718

Query: 1083 QLEAEPGRTMMESFENRVNQVLNKARDDAGSSAQKSLAESNNLKAMVTAGSKGSFINISQ 1262
            +LEAEPGRTMMESFENRVNQ LN+ARDDAG+SAQKSL+ESNNLKAMVTAGSKGSFINISQ
Sbjct: 719  KLEAEPGRTMMESFENRVNQTLNRARDDAGNSAQKSLSESNNLKAMVTAGSKGSFINISQ 778

Query: 1263 MTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLSPQEFFFHAMGG 1442
            MTACVGQQNVEGKRIPFGF+DRTLPHFTKDDYGPESRGFVENSYLRGL+PQEFFFHAMGG
Sbjct: 779  MTACVGQQNVEGKRIPFGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGG 838

Query: 1443 REGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIES 1622
            REGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIE+
Sbjct: 839  REGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIET 898

Query: 1623 QPLESLKLKRMDFNDMYKYEIDQPNWNPNYMLPEAVEDLKTIREIRSVFDAEVQKLEADR 1802
            Q L+SLK+K+ DF+  ++YE D  NW P YML E VEDLKTIRE R+VF+AEVQKL+ADR
Sbjct: 899  QKLDSLKMKKADFDRAFRYEFDDENWKPTYMLEEPVEDLKTIREFRNVFEAEVQKLDADR 958

Query: 1803 FQLGTEIATTGDNSWPLPVNIKRLVLNAQKTFRVDFRRPSDMHPMEIVEAVDKLQERLKV 1982
            FQL TEIATTGD+S PLPVN+KRL+ NAQKTF+VDFRRPSDMHPMEIVEA+DKLQERLKV
Sbjct: 959  FQLATEIATTGDSSLPLPVNLKRLIWNAQKTFKVDFRRPSDMHPMEIVEAIDKLQERLKV 1018

Query: 1983 VVGDDYLSLEAQKNATLFFNILLRSALASKRVLKEYRLTREAFDWVVGEIESRFLQSLVA 2162
            V GDD LS EAQKNATL FNILLRS  ASKRVL+EYRL+REAF+WVVGEIESRFLQSLVA
Sbjct: 1019 VPGDDLLSQEAQKNATLLFNILLRSTFASKRVLEEYRLSREAFEWVVGEIESRFLQSLVA 1078

Query: 2163 AGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVF 2342
            +GEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAK+IKTPSLSV+
Sbjct: 1079 SGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKRIKTPSLSVY 1138

Query: 2343 LKSGVSKTKEKAKNVQCALEYTTLRSVTQATEVWYDPDPMSTIIEEDVEFVKSYYEMPDE 2522
            LK  V KTKE+AK+VQCALEYTTLRSVTQATEVWYDPDPMSTIIEEDV+FVKSYYEMPDE
Sbjct: 1139 LKPEVCKTKERAKSVQCALEYTTLRSVTQATEVWYDPDPMSTIIEEDVDFVKSYYEMPDE 1198

Query: 2523 EIDPDKISPWLLRIELNREMMVDKKLSMADIAEKINLEFDDDLTCIFNDDNAEKLILRIR 2702
            E+  +KISPWLLRIELNREMMVDKKLSMADIAEKINLEFDDDLTCIFNDDNAEKLILRIR
Sbjct: 1199 EVALEKISPWLLRIELNREMMVDKKLSMADIAEKINLEFDDDLTCIFNDDNAEKLILRIR 1258

Query: 2703 IMNDEAPKGEMNDESSEDDVFLKKIEGNMLTEMALRGIPDINKVFIKNGKVNKFDENEGF 2882
            IMNDEAPKGE+ DES+EDDVFLKKIE NMLTEM LRGI DINKVFIKN K+ KFDENEGF
Sbjct: 1259 IMNDEAPKGEIQDESAEDDVFLKKIESNMLTEMTLRGIADINKVFIKNTKIQKFDENEGF 1318

Query: 2883 KAENEWMLDTEGVNLLAVICHEDVDARRTTSNHLIEVIEVLGIEAVRKALLDELRVVISF 3062
            K   EWMLDTEGVNLLAV+CHEDVDA+RTTSNHLIEVIEVLGIEAVR++LLDELRVVISF
Sbjct: 1319 KPYEEWMLDTEGVNLLAVMCHEDVDAKRTTSNHLIEVIEVLGIEAVRRSLLDELRVVISF 1378

Query: 3063 DGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAET 3242
            DGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAET
Sbjct: 1379 DGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAET 1438

Query: 3243 DYLRGVTENIMLGQLAPIGTGDCALYMNEEMLKQAIEIPLPSYMEGGLEFGMTPGRSPM- 3419
            DYLRGVTENIMLGQLAPIGTG+CAL +N+EMLK AIE+ LPSYME GL+FGMTPGRSP+ 
Sbjct: 1439 DYLRGVTENIMLGQLAPIGTGECALLLNDEMLKNAIELQLPSYME-GLDFGMTPGRSPIS 1497

Query: 3420 GTPYHDGMMSPNYMLSPNLRLSPVSDAQFSPYVGGVAF 3533
             TPYH+G+MSP+Y+LSPNLRLSP +DAQFSPYVGG+AF
Sbjct: 1498 ATPYHEGLMSPSYLLSPNLRLSPTNDAQFSPYVGGMAF 1535