BLASTX nr result
ID: Mentha28_contig00012804
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Mentha28_contig00012804
(950 letters)
Database: ./nr
38,876,450 sequences; 13,856,398,315 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_006494737.1| PREDICTED: DNA-directed RNA polymerase II su... 64 1e-07
ref|XP_006428010.1| hypothetical protein CICLE_v10026735mg [Citr... 64 1e-07
ref|XP_006428009.1| hypothetical protein CICLE_v10026735mg [Citr... 64 1e-07
gb|EYU36013.1| hypothetical protein MIMGU_mgv1a015994mg [Mimulus... 62 3e-07
ref|XP_002307132.1| hypothetical protein POPTR_0005s08690g [Popu... 62 3e-07
ref|XP_002282413.1| PREDICTED: DNA-directed RNA polymerase II su... 62 3e-07
ref|NP_196554.1| RNA polymerase II, Rpb4, core protein [Arabidop... 61 6e-07
ref|XP_002871392.1| RPB15.9 [Arabidopsis lyrata subsp. lyrata] g... 61 6e-07
ref|XP_007134240.1| hypothetical protein PHAVU_010G030200g [Phas... 60 1e-06
ref|XP_004509486.1| PREDICTED: DNA-directed RNA polymerase II su... 60 1e-06
gb|AFK35928.1| unknown [Lotus japonicus] 60 1e-06
ref|XP_003626908.1| DNA-directed RNA polymerase II subunit RPB4 ... 60 1e-06
ref|XP_003626907.1| DNA-directed RNA polymerase II subunit RPB4 ... 60 1e-06
ref|XP_007048135.1| RNA polymerase II, Rpb4, core protein isofor... 60 1e-06
ref|XP_006288864.1| hypothetical protein CARUB_v10002229mg [Caps... 60 1e-06
ref|XP_004138390.1| PREDICTED: DNA-directed RNA polymerase II su... 60 1e-06
ref|XP_002522014.1| DNA-directed RNA polymerase II, putative [Ri... 60 1e-06
gb|EXC19704.1| DNA-directed RNA polymerase II subunit [Morus not... 60 2e-06
gb|ABQ32301.1| putative 15.9 kDa subunit of RNA polymerase II [A... 60 2e-06
ref|NP_001236224.1| uncharacterized protein LOC100527704 [Glycin... 59 2e-06
>ref|XP_006494737.1| PREDICTED: DNA-directed RNA polymerase II subunit 4-like isoform X1
[Citrus sinensis]
Length = 169
Score = 63.5 bits (153), Expect = 1e-07
Identities = 31/32 (96%), Positives = 32/32 (100%)
Frame = +3
Query: 738 ETVEEAIAMVPSIKTRGRAHNDEAIEKMLNDL 833
ETVEEAIAMVPSIKTRGRAH+DEAIEKMLNDL
Sbjct: 131 ETVEEAIAMVPSIKTRGRAHDDEAIEKMLNDL 162
>ref|XP_006428010.1| hypothetical protein CICLE_v10026735mg [Citrus clementina]
gi|568884040|ref|XP_006494738.1| PREDICTED: DNA-directed
RNA polymerase II subunit 4-like isoform X2 [Citrus
sinensis] gi|557530000|gb|ESR41250.1| hypothetical
protein CICLE_v10026735mg [Citrus clementina]
Length = 138
Score = 63.5 bits (153), Expect = 1e-07
Identities = 31/32 (96%), Positives = 32/32 (100%)
Frame = +3
Query: 738 ETVEEAIAMVPSIKTRGRAHNDEAIEKMLNDL 833
ETVEEAIAMVPSIKTRGRAH+DEAIEKMLNDL
Sbjct: 100 ETVEEAIAMVPSIKTRGRAHDDEAIEKMLNDL 131
>ref|XP_006428009.1| hypothetical protein CICLE_v10026735mg [Citrus clementina]
gi|557529999|gb|ESR41249.1| hypothetical protein
CICLE_v10026735mg [Citrus clementina]
Length = 114
Score = 63.5 bits (153), Expect = 1e-07
Identities = 31/32 (96%), Positives = 32/32 (100%)
Frame = +3
Query: 738 ETVEEAIAMVPSIKTRGRAHNDEAIEKMLNDL 833
ETVEEAIAMVPSIKTRGRAH+DEAIEKMLNDL
Sbjct: 76 ETVEEAIAMVPSIKTRGRAHDDEAIEKMLNDL 107
>gb|EYU36013.1| hypothetical protein MIMGU_mgv1a015994mg [Mimulus guttatus]
Length = 138
Score = 62.4 bits (150), Expect = 3e-07
Identities = 30/32 (93%), Positives = 32/32 (100%)
Frame = +3
Query: 738 ETVEEAIAMVPSIKTRGRAHNDEAIEKMLNDL 833
ETVEEAIAMVPSIKTRGRAH+DEAIE+MLNDL
Sbjct: 100 ETVEEAIAMVPSIKTRGRAHDDEAIERMLNDL 131
>ref|XP_002307132.1| hypothetical protein POPTR_0005s08690g [Populus trichocarpa]
gi|224096326|ref|XP_002310604.1| hypothetical protein
POPTR_0007s06660g [Populus trichocarpa]
gi|222853507|gb|EEE91054.1| hypothetical protein
POPTR_0007s06660g [Populus trichocarpa]
gi|222856581|gb|EEE94128.1| hypothetical protein
POPTR_0005s08690g [Populus trichocarpa]
Length = 138
Score = 62.4 bits (150), Expect = 3e-07
Identities = 30/32 (93%), Positives = 32/32 (100%)
Frame = +3
Query: 738 ETVEEAIAMVPSIKTRGRAHNDEAIEKMLNDL 833
ETVEEAIAMVPSIKT+GRAH+DEAIEKMLNDL
Sbjct: 100 ETVEEAIAMVPSIKTKGRAHDDEAIEKMLNDL 131
>ref|XP_002282413.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB4 [Vitis
vinifera] gi|147856183|emb|CAN80281.1| hypothetical
protein VITISV_017448 [Vitis vinifera]
gi|302143481|emb|CBI22042.3| unnamed protein product
[Vitis vinifera]
Length = 138
Score = 62.4 bits (150), Expect = 3e-07
Identities = 30/32 (93%), Positives = 32/32 (100%)
Frame = +3
Query: 738 ETVEEAIAMVPSIKTRGRAHNDEAIEKMLNDL 833
ETVEEAIAMVPSIKT+GRAH+DEAIEKMLNDL
Sbjct: 100 ETVEEAIAMVPSIKTKGRAHDDEAIEKMLNDL 131
>ref|NP_196554.1| RNA polymerase II, Rpb4, core protein [Arabidopsis thaliana]
gi|75098524|sp|O48890.1|NRPB4_ARATH RecName:
Full=DNA-directed RNA polymerase II subunit 4; AltName:
Full=15.9 kDa subunit of RNA polymerase II; AltName:
Full=DNA-directed RNA polymerase II subunit D
gi|2760362|gb|AAB95261.1| 15.9 kDa subunit of RNA
polymerase II [Arabidopsis thaliana]
gi|9758970|dbj|BAB09413.1| 15.9 kDa subunit of RNA
polymerase II [Arabidopsis thaliana]
gi|21554212|gb|AAM63291.1| 15.9 kDa subunit of RNA
polymerase II [Arabidopsis thaliana]
gi|98960869|gb|ABF58918.1| At5g09920 [Arabidopsis
thaliana] gi|222423668|dbj|BAH19801.1| AT5G09920
[Arabidopsis thaliana] gi|332004084|gb|AED91467.1| RNA
polymerase II, Rpb4, core protein [Arabidopsis thaliana]
Length = 138
Score = 61.2 bits (147), Expect = 6e-07
Identities = 28/32 (87%), Positives = 32/32 (100%)
Frame = +3
Query: 738 ETVEEAIAMVPSIKTRGRAHNDEAIEKMLNDL 833
ETVEEA+AMVPS+KT+GRAH+DEAIEKMLNDL
Sbjct: 100 ETVEEAVAMVPSLKTKGRAHDDEAIEKMLNDL 131
>ref|XP_002871392.1| RPB15.9 [Arabidopsis lyrata subsp. lyrata]
gi|297317229|gb|EFH47651.1| RPB15.9 [Arabidopsis lyrata
subsp. lyrata]
Length = 138
Score = 61.2 bits (147), Expect = 6e-07
Identities = 28/32 (87%), Positives = 32/32 (100%)
Frame = +3
Query: 738 ETVEEAIAMVPSIKTRGRAHNDEAIEKMLNDL 833
ETVEEA+AMVPS+KT+GRAH+DEAIEKMLNDL
Sbjct: 100 ETVEEAVAMVPSLKTKGRAHDDEAIEKMLNDL 131
>ref|XP_007134240.1| hypothetical protein PHAVU_010G030200g [Phaseolus vulgaris]
gi|561007285|gb|ESW06234.1| hypothetical protein
PHAVU_010G030200g [Phaseolus vulgaris]
Length = 138
Score = 60.5 bits (145), Expect = 1e-06
Identities = 30/32 (93%), Positives = 31/32 (96%)
Frame = +3
Query: 738 ETVEEAIAMVPSIKTRGRAHNDEAIEKMLNDL 833
ETVEEAIAMVPSIKTRGRA +DEAIEKMLNDL
Sbjct: 100 ETVEEAIAMVPSIKTRGRAQDDEAIEKMLNDL 131
>ref|XP_004509486.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB4-like [Cicer
arietinum] gi|502155876|ref|XP_004510223.1| PREDICTED:
DNA-directed RNA polymerase II subunit RPB4-like [Cicer
arietinum]
Length = 138
Score = 60.5 bits (145), Expect = 1e-06
Identities = 30/32 (93%), Positives = 31/32 (96%)
Frame = +3
Query: 738 ETVEEAIAMVPSIKTRGRAHNDEAIEKMLNDL 833
ETVEEAIAMVPSIKTRGRA +DEAIEKMLNDL
Sbjct: 100 ETVEEAIAMVPSIKTRGRAQDDEAIEKMLNDL 131
>gb|AFK35928.1| unknown [Lotus japonicus]
Length = 138
Score = 60.5 bits (145), Expect = 1e-06
Identities = 30/32 (93%), Positives = 31/32 (96%)
Frame = +3
Query: 738 ETVEEAIAMVPSIKTRGRAHNDEAIEKMLNDL 833
ETVEEAIAMVPSIKTRGRA +DEAIEKMLNDL
Sbjct: 100 ETVEEAIAMVPSIKTRGRAQDDEAIEKMLNDL 131
>ref|XP_003626908.1| DNA-directed RNA polymerase II subunit RPB4 [Medicago truncatula]
gi|355520930|gb|AET01384.1| DNA-directed RNA polymerase
II subunit RPB4 [Medicago truncatula]
Length = 114
Score = 60.5 bits (145), Expect = 1e-06
Identities = 30/32 (93%), Positives = 31/32 (96%)
Frame = +3
Query: 738 ETVEEAIAMVPSIKTRGRAHNDEAIEKMLNDL 833
ETVEEAIAMVPSIKTRGRA +DEAIEKMLNDL
Sbjct: 76 ETVEEAIAMVPSIKTRGRAQDDEAIEKMLNDL 107
>ref|XP_003626907.1| DNA-directed RNA polymerase II subunit RPB4 [Medicago truncatula]
gi|355520929|gb|AET01383.1| DNA-directed RNA polymerase
II subunit RPB4 [Medicago truncatula]
gi|388497296|gb|AFK36714.1| unknown [Medicago
truncatula]
Length = 138
Score = 60.5 bits (145), Expect = 1e-06
Identities = 30/32 (93%), Positives = 31/32 (96%)
Frame = +3
Query: 738 ETVEEAIAMVPSIKTRGRAHNDEAIEKMLNDL 833
ETVEEAIAMVPSIKTRGRA +DEAIEKMLNDL
Sbjct: 100 ETVEEAIAMVPSIKTRGRAQDDEAIEKMLNDL 131
>ref|XP_007048135.1| RNA polymerase II, Rpb4, core protein isoform 1 [Theobroma cacao]
gi|590707933|ref|XP_007048136.1| RNA polymerase II,
Rpb4, core protein isoform 1 [Theobroma cacao]
gi|508700396|gb|EOX92292.1| RNA polymerase II, Rpb4,
core protein isoform 1 [Theobroma cacao]
gi|508700397|gb|EOX92293.1| RNA polymerase II, Rpb4,
core protein isoform 1 [Theobroma cacao]
Length = 138
Score = 60.1 bits (144), Expect = 1e-06
Identities = 28/32 (87%), Positives = 32/32 (100%)
Frame = +3
Query: 738 ETVEEAIAMVPSIKTRGRAHNDEAIEKMLNDL 833
ETVEEAIAMVPSIKT+GRAH+D+AIE+MLNDL
Sbjct: 100 ETVEEAIAMVPSIKTKGRAHDDDAIERMLNDL 131
>ref|XP_006288864.1| hypothetical protein CARUB_v10002229mg [Capsella rubella]
gi|482557570|gb|EOA21762.1| hypothetical protein
CARUB_v10002229mg [Capsella rubella]
Length = 138
Score = 60.1 bits (144), Expect = 1e-06
Identities = 27/32 (84%), Positives = 32/32 (100%)
Frame = +3
Query: 738 ETVEEAIAMVPSIKTRGRAHNDEAIEKMLNDL 833
ETVEEA+AMVPS+KT+GRAH+D+AIEKMLNDL
Sbjct: 100 ETVEEAVAMVPSLKTKGRAHDDDAIEKMLNDL 131
>ref|XP_004138390.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB4-like
[Cucumis sativus] gi|449526195|ref|XP_004170099.1|
PREDICTED: DNA-directed RNA polymerase II subunit
RPB4-like [Cucumis sativus]
Length = 138
Score = 60.1 bits (144), Expect = 1e-06
Identities = 28/32 (87%), Positives = 31/32 (96%)
Frame = +3
Query: 738 ETVEEAIAMVPSIKTRGRAHNDEAIEKMLNDL 833
ETVEEAIAMVPS+KT+GR H+DEAIEKMLNDL
Sbjct: 100 ETVEEAIAMVPSLKTKGRVHDDEAIEKMLNDL 131
>ref|XP_002522014.1| DNA-directed RNA polymerase II, putative [Ricinus communis]
gi|223538818|gb|EEF40418.1| DNA-directed RNA polymerase
II, putative [Ricinus communis]
Length = 138
Score = 60.1 bits (144), Expect = 1e-06
Identities = 29/32 (90%), Positives = 31/32 (96%)
Frame = +3
Query: 738 ETVEEAIAMVPSIKTRGRAHNDEAIEKMLNDL 833
ETVEEAIAMVPSIKT+GRAH+DEAIEKML DL
Sbjct: 100 ETVEEAIAMVPSIKTKGRAHDDEAIEKMLTDL 131
>gb|EXC19704.1| DNA-directed RNA polymerase II subunit [Morus notabilis]
Length = 121
Score = 59.7 bits (143), Expect = 2e-06
Identities = 28/32 (87%), Positives = 32/32 (100%)
Frame = +3
Query: 738 ETVEEAIAMVPSIKTRGRAHNDEAIEKMLNDL 833
ETVEEAIAMVPSI+++GRAH+DEAIEKMLNDL
Sbjct: 83 ETVEEAIAMVPSIRSKGRAHDDEAIEKMLNDL 114
>gb|ABQ32301.1| putative 15.9 kDa subunit of RNA polymerase II [Artemisia annua]
Length = 138
Score = 59.7 bits (143), Expect = 2e-06
Identities = 28/32 (87%), Positives = 31/32 (96%)
Frame = +3
Query: 738 ETVEEAIAMVPSIKTRGRAHNDEAIEKMLNDL 833
ETVEEAIAMVPSIK+RGR H+DEAIEKMLND+
Sbjct: 100 ETVEEAIAMVPSIKSRGRGHDDEAIEKMLNDM 131
>ref|NP_001236224.1| uncharacterized protein LOC100527704 [Glycine max]
gi|255632992|gb|ACU16850.1| unknown [Glycine max]
Length = 195
Score = 59.3 bits (142), Expect = 2e-06
Identities = 31/43 (72%), Positives = 34/43 (79%)
Frame = +3
Query: 738 ETVEEAIAMVPSIKTRGRAHNDEAIEKMLNDLFYFLCMNDISK 866
ETVEEAIAMVPSIK+RGRA +DEAIEKMLNDL +N K
Sbjct: 100 ETVEEAIAMVPSIKSRGRAQDDEAIEKMLNDLSLIKNLNKYVK 142