BLASTX nr result

ID: Mentha28_contig00012408 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Mentha28_contig00012408
         (280 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|EYU29217.1| hypothetical protein MIMGU_mgv1a000367mg [Mimulus...    99   3e-40
gb|AAY68200.1| RNA polymerase IV second largest subunit [Antirrh...    99   4e-40
gb|EPS73521.1| hypothetical protein M569_01229, partial [Genlise...    99   2e-38
ref|XP_003527775.1| PREDICTED: DNA-directed RNA polymerases IV a...    95   3e-35
ref|XP_003523670.1| PREDICTED: DNA-directed RNA polymerases IV a...    95   3e-35
ref|XP_004145500.1| PREDICTED: DNA-directed RNA polymerase D sub...    97   3e-35
ref|XP_007136942.1| hypothetical protein PHAVU_009G087100g [Phas...    95   4e-35
gb|EXB86677.1| DNA-directed RNA polymerase D subunit 2a [Morus n...    96   5e-35
ref|XP_002515428.1| DNA-directed RNA polymerase subunit, putativ...    97   8e-35
ref|XP_006406653.1| hypothetical protein EUTSA_v10019931mg [Eutr...    96   8e-35
ref|XP_006300099.1| hypothetical protein CARUB_v10016327mg [Caps...    96   8e-35
ref|XP_003603295.1| DNA-directed RNA polymerase subunit beta [Me...    95   1e-34
ref|XP_004288915.1| PREDICTED: DNA-directed RNA polymerase D sub...    96   1e-34
ref|XP_004501385.1| PREDICTED: DNA-directed RNA polymerase D sub...    95   1e-34
gb|AAY68198.1| RNA polymerase IV second largest subunit [Rhodode...    98   2e-34
ref|XP_006442883.1| hypothetical protein CICLE_v10018562mg [Citr...    96   3e-34
ref|XP_007011717.1| DNA-directed RNA polymerase isoform 1 [Theob...    96   3e-34
ref|NP_189020.2| nuclear RNA polymerase D2A [Arabidopsis thalian...    96   4e-34
dbj|BAD43874.1| putative DNA-directed RNA polymerase subunit [Ar...    96   4e-34
ref|XP_002883108.1| NRPD2a [Arabidopsis lyrata subsp. lyrata] gi...    95   5e-34

>gb|EYU29217.1| hypothetical protein MIMGU_mgv1a000367mg [Mimulus guttatus]
          Length = 1211

 Score = 99.0 bits (245), Expect(2) = 3e-40
 Identities = 46/49 (93%), Positives = 47/49 (95%)
 Frame = +3

Query: 132  GATFYQRLTHMAEDKVKFRNTGPVHPLTRQPVADRKQFGGIKFGEME*D 278
            G TFYQRLTHMAEDKVKFRNTGPVHPLTRQPVADRK+FGGIKFGEME D
Sbjct: 1070 GPTFYQRLTHMAEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERD 1118



 Score = 92.4 bits (228), Expect(2) = 3e-40
 Identities = 42/46 (91%), Positives = 44/46 (95%)
 Frame = +1

Query: 1    ATPFSTPSAEDITAQLHRLGYSRWGGERVYDGRTGEKVESLIFMGP 138
            ATPFS+PS EDITAQLHRLG+SRWGGERVYDGRTGEKV SLIFMGP
Sbjct: 1026 ATPFSSPSVEDITAQLHRLGFSRWGGERVYDGRTGEKVNSLIFMGP 1071


>gb|AAY68200.1| RNA polymerase IV second largest subunit [Antirrhinum majus]
          Length = 821

 Score = 98.6 bits (244), Expect(2) = 4e-40
 Identities = 45/49 (91%), Positives = 47/49 (95%)
 Frame = +3

Query: 132 GATFYQRLTHMAEDKVKFRNTGPVHPLTRQPVADRKQFGGIKFGEME*D 278
           G TFYQRLTHMAEDK+KFRNTGPVHPLTRQPVADRK+FGGIKFGEME D
Sbjct: 682 GPTFYQRLTHMAEDKIKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERD 730



 Score = 92.0 bits (227), Expect(2) = 4e-40
 Identities = 42/46 (91%), Positives = 44/46 (95%)
 Frame = +1

Query: 1   ATPFSTPSAEDITAQLHRLGYSRWGGERVYDGRTGEKVESLIFMGP 138
           ATPFSTPS +DITAQLHRLG+SRWG ERVYDGRTGEKVESLIFMGP
Sbjct: 638 ATPFSTPSVDDITAQLHRLGFSRWGDERVYDGRTGEKVESLIFMGP 683


>gb|EPS73521.1| hypothetical protein M569_01229, partial [Genlisea aurea]
          Length = 1205

 Score = 99.0 bits (245), Expect(2) = 2e-38
 Identities = 46/49 (93%), Positives = 47/49 (95%)
 Frame = +3

Query: 132  GATFYQRLTHMAEDKVKFRNTGPVHPLTRQPVADRKQFGGIKFGEME*D 278
            G TFYQRLTHMAEDKVKFRNTGPVHPLTRQPVADRK+FGGIKFGEME D
Sbjct: 1066 GPTFYQRLTHMAEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERD 1114



 Score = 85.9 bits (211), Expect(2) = 2e-38
 Identities = 38/46 (82%), Positives = 43/46 (93%)
 Frame = +1

Query: 1    ATPFSTPSAEDITAQLHRLGYSRWGGERVYDGRTGEKVESLIFMGP 138
            ATPFS+PS EDITAQLHRLG+SRWG E+VYDGRTGE ++SLIFMGP
Sbjct: 1022 ATPFSSPSVEDITAQLHRLGFSRWGAEKVYDGRTGEALKSLIFMGP 1067


>ref|XP_003527775.1| PREDICTED: DNA-directed RNA polymerases IV and V subunit 2-like
            [Glycine max]
          Length = 1205

 Score = 95.1 bits (235), Expect(2) = 3e-35
 Identities = 44/49 (89%), Positives = 46/49 (93%)
 Frame = +3

Query: 132  GATFYQRLTHMAEDKVKFRNTGPVHPLTRQPVADRKQFGGIKFGEME*D 278
            G TFYQRL HM+EDKVKFRNTGPVHPLTRQPVADRK+FGGIKFGEME D
Sbjct: 1066 GPTFYQRLHHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERD 1114



 Score = 79.3 bits (194), Expect(2) = 3e-35
 Identities = 36/46 (78%), Positives = 39/46 (84%)
 Frame = +1

Query: 1    ATPFSTPSAEDITAQLHRLGYSRWGGERVYDGRTGEKVESLIFMGP 138
            ATPFSTPS + IT QLHR G+SRWG ERVY+GRTGE V SLIFMGP
Sbjct: 1022 ATPFSTPSVDAITEQLHRAGFSRWGNERVYNGRTGEMVRSLIFMGP 1067


>ref|XP_003523670.1| PREDICTED: DNA-directed RNA polymerases IV and V subunit 2-like
            [Glycine max]
          Length = 1205

 Score = 95.1 bits (235), Expect(2) = 3e-35
 Identities = 44/49 (89%), Positives = 46/49 (93%)
 Frame = +3

Query: 132  GATFYQRLTHMAEDKVKFRNTGPVHPLTRQPVADRKQFGGIKFGEME*D 278
            G TFYQRL HM+EDKVKFRNTGPVHPLTRQPVADRK+FGGIKFGEME D
Sbjct: 1066 GPTFYQRLHHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERD 1114



 Score = 79.3 bits (194), Expect(2) = 3e-35
 Identities = 36/46 (78%), Positives = 39/46 (84%)
 Frame = +1

Query: 1    ATPFSTPSAEDITAQLHRLGYSRWGGERVYDGRTGEKVESLIFMGP 138
            ATPFSTPS + IT QLHR G+SRWG ERVY+GRTGE V SLIFMGP
Sbjct: 1022 ATPFSTPSVDAITEQLHRAGFSRWGNERVYNGRTGEMVRSLIFMGP 1067


>ref|XP_004145500.1| PREDICTED: DNA-directed RNA polymerase D subunit 2a-like [Cucumis
            sativus]
          Length = 1197

 Score = 96.7 bits (239), Expect(2) = 3e-35
 Identities = 45/49 (91%), Positives = 46/49 (93%)
 Frame = +3

Query: 132  GATFYQRLTHMAEDKVKFRNTGPVHPLTRQPVADRKQFGGIKFGEME*D 278
            G TFYQRL HMAEDKVKFRNTGPVHPLTRQPVADRK+FGGIKFGEME D
Sbjct: 1058 GPTFYQRLIHMAEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERD 1106



 Score = 77.8 bits (190), Expect(2) = 3e-35
 Identities = 35/46 (76%), Positives = 39/46 (84%)
 Frame = +1

Query: 1    ATPFSTPSAEDITAQLHRLGYSRWGGERVYDGRTGEKVESLIFMGP 138
            ATPFSTPS + IT QLHR G+SRWG ERVY+GRTGE + SLIFMGP
Sbjct: 1014 ATPFSTPSVDAITDQLHRAGFSRWGSERVYNGRTGEMMRSLIFMGP 1059


>ref|XP_007136942.1| hypothetical protein PHAVU_009G087100g [Phaseolus vulgaris]
            gi|561010029|gb|ESW08936.1| hypothetical protein
            PHAVU_009G087100g [Phaseolus vulgaris]
          Length = 1202

 Score = 95.1 bits (235), Expect(2) = 4e-35
 Identities = 44/49 (89%), Positives = 46/49 (93%)
 Frame = +3

Query: 132  GATFYQRLTHMAEDKVKFRNTGPVHPLTRQPVADRKQFGGIKFGEME*D 278
            G TFYQRL HM+EDKVKFRNTGPVHPLTRQPVADRK+FGGIKFGEME D
Sbjct: 1063 GPTFYQRLHHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERD 1111



 Score = 79.0 bits (193), Expect(2) = 4e-35
 Identities = 36/46 (78%), Positives = 39/46 (84%)
 Frame = +1

Query: 1    ATPFSTPSAEDITAQLHRLGYSRWGGERVYDGRTGEKVESLIFMGP 138
            ATPFSTPS + IT QLHR G+SRWG ERVY+GRTGE V SLIFMGP
Sbjct: 1019 ATPFSTPSVDAITDQLHRAGFSRWGNERVYNGRTGEMVRSLIFMGP 1064


>gb|EXB86677.1| DNA-directed RNA polymerase D subunit 2a [Morus notabilis]
          Length = 1196

 Score = 95.5 bits (236), Expect(2) = 5e-35
 Identities = 43/49 (87%), Positives = 46/49 (93%)
 Frame = +3

Query: 132  GATFYQRLTHMAEDKVKFRNTGPVHPLTRQPVADRKQFGGIKFGEME*D 278
            G TFYQRL HM+EDKVKFRNTGPVHPLTRQPVADRK+FGG+KFGEME D
Sbjct: 1057 GPTFYQRLVHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGVKFGEMERD 1105



 Score = 78.2 bits (191), Expect(2) = 5e-35
 Identities = 35/46 (76%), Positives = 39/46 (84%)
 Frame = +1

Query: 1    ATPFSTPSAEDITAQLHRLGYSRWGGERVYDGRTGEKVESLIFMGP 138
            ATPFSTPS + IT QLH+ G+SRWG ERVY+GRTGE V SLIFMGP
Sbjct: 1013 ATPFSTPSVDAITEQLHKAGFSRWGNERVYNGRTGEMVRSLIFMGP 1058


>ref|XP_002515428.1| DNA-directed RNA polymerase subunit, putative [Ricinus communis]
            gi|223545372|gb|EEF46877.1| DNA-directed RNA polymerase
            subunit, putative [Ricinus communis]
          Length = 1203

 Score = 96.7 bits (239), Expect(2) = 8e-35
 Identities = 45/49 (91%), Positives = 46/49 (93%)
 Frame = +3

Query: 132  GATFYQRLTHMAEDKVKFRNTGPVHPLTRQPVADRKQFGGIKFGEME*D 278
            G TFYQRL HMAEDKVKFRNTGPVHPLTRQPVADRK+FGGIKFGEME D
Sbjct: 1064 GPTFYQRLIHMAEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERD 1112



 Score = 76.3 bits (186), Expect(2) = 8e-35
 Identities = 36/46 (78%), Positives = 38/46 (82%)
 Frame = +1

Query: 1    ATPFSTPSAEDITAQLHRLGYSRWGGERVYDGRTGEKVESLIFMGP 138
            ATPFST S E IT QLHR G+SRWG ERVY+GRTGE V SLIFMGP
Sbjct: 1020 ATPFSTLSVEAITNQLHRAGFSRWGNERVYNGRTGEMVRSLIFMGP 1065


>ref|XP_006406653.1| hypothetical protein EUTSA_v10019931mg [Eutrema salsugineum]
            gi|557107799|gb|ESQ48106.1| hypothetical protein
            EUTSA_v10019931mg [Eutrema salsugineum]
          Length = 1169

 Score = 95.9 bits (237), Expect(2) = 8e-35
 Identities = 44/49 (89%), Positives = 46/49 (93%)
 Frame = +3

Query: 132  GATFYQRLTHMAEDKVKFRNTGPVHPLTRQPVADRKQFGGIKFGEME*D 278
            G TFYQRL HM+EDKVKFRNTGPVHPLTRQPVADRK+FGGIKFGEME D
Sbjct: 1029 GPTFYQRLVHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERD 1077



 Score = 77.0 bits (188), Expect(2) = 8e-35
 Identities = 34/46 (73%), Positives = 39/46 (84%)
 Frame = +1

Query: 1    ATPFSTPSAEDITAQLHRLGYSRWGGERVYDGRTGEKVESLIFMGP 138
            ATPFSTPS  +IT QLHR G+SRWG ERVY+GR+GE + SLIFMGP
Sbjct: 985  ATPFSTPSVSEITDQLHRAGFSRWGNERVYNGRSGEMMRSLIFMGP 1030


>ref|XP_006300099.1| hypothetical protein CARUB_v10016327mg [Capsella rubella]
            gi|482568808|gb|EOA32997.1| hypothetical protein
            CARUB_v10016327mg [Capsella rubella]
          Length = 1161

 Score = 95.9 bits (237), Expect(2) = 8e-35
 Identities = 44/49 (89%), Positives = 46/49 (93%)
 Frame = +3

Query: 132  GATFYQRLTHMAEDKVKFRNTGPVHPLTRQPVADRKQFGGIKFGEME*D 278
            G TFYQRL HM+EDKVKFRNTGPVHPLTRQPVADRK+FGGIKFGEME D
Sbjct: 1022 GPTFYQRLVHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERD 1070



 Score = 77.0 bits (188), Expect(2) = 8e-35
 Identities = 34/46 (73%), Positives = 39/46 (84%)
 Frame = +1

Query: 1    ATPFSTPSAEDITAQLHRLGYSRWGGERVYDGRTGEKVESLIFMGP 138
            ATPFSTPS  +IT QLHR G+SRWG ERVY+GR+GE + SLIFMGP
Sbjct: 978  ATPFSTPSISEITEQLHRAGFSRWGNERVYNGRSGEMMRSLIFMGP 1023


>ref|XP_003603295.1| DNA-directed RNA polymerase subunit beta [Medicago truncatula]
            gi|355492343|gb|AES73546.1| DNA-directed RNA polymerase
            subunit beta [Medicago truncatula]
          Length = 1237

 Score = 95.1 bits (235), Expect(2) = 1e-34
 Identities = 44/49 (89%), Positives = 46/49 (93%)
 Frame = +3

Query: 132  GATFYQRLTHMAEDKVKFRNTGPVHPLTRQPVADRKQFGGIKFGEME*D 278
            G TFYQRL HM+EDKVKFRNTGPVHPLTRQPVADRK+FGGIKFGEME D
Sbjct: 1098 GPTFYQRLHHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERD 1146



 Score = 77.0 bits (188), Expect(2) = 1e-34
 Identities = 36/46 (78%), Positives = 38/46 (82%)
 Frame = +1

Query: 1    ATPFSTPSAEDITAQLHRLGYSRWGGERVYDGRTGEKVESLIFMGP 138
            ATPFST S E IT QLHR G+SRWG ERVY+GRTGE V SLIFMGP
Sbjct: 1054 ATPFSTSSVEAITDQLHRAGFSRWGNERVYNGRTGEMVRSLIFMGP 1099


>ref|XP_004288915.1| PREDICTED: DNA-directed RNA polymerase D subunit 2a-like [Fragaria
            vesca subsp. vesca]
          Length = 1201

 Score = 95.5 bits (236), Expect(2) = 1e-34
 Identities = 44/49 (89%), Positives = 46/49 (93%)
 Frame = +3

Query: 132  GATFYQRLTHMAEDKVKFRNTGPVHPLTRQPVADRKQFGGIKFGEME*D 278
            G TFYQRL HM+EDKVKFRNTGPVHPLTRQPVADRK+FGGIKFGEME D
Sbjct: 1062 GPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERD 1110



 Score = 76.6 bits (187), Expect(2) = 1e-34
 Identities = 35/46 (76%), Positives = 38/46 (82%)
 Frame = +1

Query: 1    ATPFSTPSAEDITAQLHRLGYSRWGGERVYDGRTGEKVESLIFMGP 138
            ATPFST S +DIT QLHR G+SRWG ERVY+GRTGE V  LIFMGP
Sbjct: 1018 ATPFSTLSVDDITDQLHRAGFSRWGNERVYNGRTGEMVRQLIFMGP 1063


>ref|XP_004501385.1| PREDICTED: DNA-directed RNA polymerase D subunit 2a-like [Cicer
            arietinum]
          Length = 1199

 Score = 95.1 bits (235), Expect(2) = 1e-34
 Identities = 44/49 (89%), Positives = 46/49 (93%)
 Frame = +3

Query: 132  GATFYQRLTHMAEDKVKFRNTGPVHPLTRQPVADRKQFGGIKFGEME*D 278
            G TFYQRL HM+EDKVKFRNTGPVHPLTRQPVADRK+FGGIKFGEME D
Sbjct: 1060 GPTFYQRLHHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERD 1108



 Score = 77.0 bits (188), Expect(2) = 1e-34
 Identities = 36/46 (78%), Positives = 38/46 (82%)
 Frame = +1

Query: 1    ATPFSTPSAEDITAQLHRLGYSRWGGERVYDGRTGEKVESLIFMGP 138
            ATPFST S E IT QLHR G+SRWG ERVY+GRTGE V SLIFMGP
Sbjct: 1016 ATPFSTSSVEAITDQLHRAGFSRWGNERVYNGRTGEMVRSLIFMGP 1061


>gb|AAY68198.1| RNA polymerase IV second largest subunit [Rhododendron macrophyllum]
          Length = 1019

 Score = 97.8 bits (242), Expect(2) = 2e-34
 Identities = 45/49 (91%), Positives = 47/49 (95%)
 Frame = +3

Query: 132  GATFYQRLTHMAEDKVKFRNTGPVHPLTRQPVADRKQFGGIKFGEME*D 278
            G TFYQRLTHM+EDKVKFRNTGPVHPLTRQPVADRK+FGGIKFGEME D
Sbjct: 880  GPTFYQRLTHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERD 928



 Score = 73.9 bits (180), Expect(2) = 2e-34
 Identities = 32/46 (69%), Positives = 38/46 (82%)
 Frame = +1

Query: 1   ATPFSTPSAEDITAQLHRLGYSRWGGERVYDGRTGEKVESLIFMGP 138
           ATPFST S + +T QLHR G+SRWG ERVY+GRTGE + SL+FMGP
Sbjct: 836 ATPFSTLSVDAVTDQLHRAGFSRWGSERVYNGRTGEMIHSLVFMGP 881


>ref|XP_006442883.1| hypothetical protein CICLE_v10018562mg [Citrus clementina]
            gi|568850178|ref|XP_006478802.1| PREDICTED: DNA-directed
            RNA polymerases IV and V subunit 2-like [Citrus sinensis]
            gi|557545145|gb|ESR56123.1| hypothetical protein
            CICLE_v10018562mg [Citrus clementina]
          Length = 1198

 Score = 95.5 bits (236), Expect(2) = 3e-34
 Identities = 44/49 (89%), Positives = 46/49 (93%)
 Frame = +3

Query: 132  GATFYQRLTHMAEDKVKFRNTGPVHPLTRQPVADRKQFGGIKFGEME*D 278
            G TFYQRL HM+EDKVKFRNTGPVHPLTRQPVADRK+FGGIKFGEME D
Sbjct: 1059 GPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERD 1107



 Score = 75.5 bits (184), Expect(2) = 3e-34
 Identities = 33/46 (71%), Positives = 39/46 (84%)
 Frame = +1

Query: 1    ATPFSTPSAEDITAQLHRLGYSRWGGERVYDGRTGEKVESLIFMGP 138
            ATPF+TPS + IT QLHR G+S+WG ER+YDGRTGE V SLIF+GP
Sbjct: 1015 ATPFATPSVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGP 1060


>ref|XP_007011717.1| DNA-directed RNA polymerase isoform 1 [Theobroma cacao]
            gi|508782080|gb|EOY29336.1| DNA-directed RNA polymerase
            isoform 1 [Theobroma cacao]
          Length = 1184

 Score = 95.5 bits (236), Expect(2) = 3e-34
 Identities = 44/49 (89%), Positives = 46/49 (93%)
 Frame = +3

Query: 132  GATFYQRLTHMAEDKVKFRNTGPVHPLTRQPVADRKQFGGIKFGEME*D 278
            G TFYQRL HMAEDKVKFRNTGPVHPLTRQPVADRK++GGIKFGEME D
Sbjct: 1045 GPTFYQRLIHMAEDKVKFRNTGPVHPLTRQPVADRKRYGGIKFGEMERD 1093



 Score = 75.5 bits (184), Expect(2) = 3e-34
 Identities = 35/46 (76%), Positives = 38/46 (82%)
 Frame = +1

Query: 1    ATPFSTPSAEDITAQLHRLGYSRWGGERVYDGRTGEKVESLIFMGP 138
            ATPFST S + IT QLHR G+SRWG ERVY+GRTGE V SLIFMGP
Sbjct: 1001 ATPFSTISVDAITEQLHRAGFSRWGNERVYNGRTGEMVRSLIFMGP 1046


>ref|NP_189020.2| nuclear RNA polymerase D2A [Arabidopsis thaliana]
            gi|334185578|ref|NP_001189957.1| nuclear RNA polymerase
            D2A [Arabidopsis thaliana]
            gi|75335101|sp|Q9LK40.1|NRPD2_ARATH RecName:
            Full=DNA-directed RNA polymerases IV and V subunit 2;
            AltName: Full=DNA-directed RNA polymerase D subunit 2a;
            Short=AtNRPD2a; Short=Nuclear RNA polymerase D 2a;
            AltName: Full=Nuclear RNA polymerase E 2; AltName:
            Full=Protein DEFECTIVE IN MERISTEM SILENCING 2; AltName:
            Full=Protein DEFECTIVE IN RNA-DIRECTED DNA METHYLATION 2;
            AltName: Full=RNA polymerase IV subunit 2a; Short=POL IV
            2a gi|9293951|dbj|BAB01854.1| DNA-directed RNA
            polymerase, subunit B [Arabidopsis thaliana]
            gi|57791156|gb|AAW56422.1| polymerase IV second largest
            subunit [Arabidopsis thaliana] gi|62183738|gb|AAX73261.1|
            RNA polymerase IV second-largest subunit [Arabidopsis
            thaliana] gi|332643291|gb|AEE76812.1| nuclear RNA
            polymerase D2A [Arabidopsis thaliana]
            gi|332643292|gb|AEE76813.1| nuclear RNA polymerase D2A
            [Arabidopsis thaliana]
          Length = 1172

 Score = 95.9 bits (237), Expect(2) = 4e-34
 Identities = 44/49 (89%), Positives = 46/49 (93%)
 Frame = +3

Query: 132  GATFYQRLTHMAEDKVKFRNTGPVHPLTRQPVADRKQFGGIKFGEME*D 278
            G TFYQRL HM+EDKVKFRNTGPVHPLTRQPVADRK+FGGIKFGEME D
Sbjct: 1033 GPTFYQRLVHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERD 1081



 Score = 74.7 bits (182), Expect(2) = 4e-34
 Identities = 32/46 (69%), Positives = 38/46 (82%)
 Frame = +1

Query: 1    ATPFSTPSAEDITAQLHRLGYSRWGGERVYDGRTGEKVESLIFMGP 138
            ATPFSTP   +IT QLHR G+SRWG ERVY+GR+GE + S+IFMGP
Sbjct: 989  ATPFSTPGVTEITEQLHRAGFSRWGNERVYNGRSGEMMRSMIFMGP 1034


>dbj|BAD43874.1| putative DNA-directed RNA polymerase subunit [Arabidopsis thaliana]
          Length = 639

 Score = 95.9 bits (237), Expect(2) = 4e-34
 Identities = 44/49 (89%), Positives = 46/49 (93%)
 Frame = +3

Query: 132 GATFYQRLTHMAEDKVKFRNTGPVHPLTRQPVADRKQFGGIKFGEME*D 278
           G TFYQRL HM+EDKVKFRNTGPVHPLTRQPVADRK+FGGIKFGEME D
Sbjct: 500 GPTFYQRLVHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERD 548



 Score = 74.7 bits (182), Expect(2) = 4e-34
 Identities = 32/46 (69%), Positives = 38/46 (82%)
 Frame = +1

Query: 1   ATPFSTPSAEDITAQLHRLGYSRWGGERVYDGRTGEKVESLIFMGP 138
           ATPFSTP   +IT QLHR G+SRWG ERVY+GR+GE + S+IFMGP
Sbjct: 456 ATPFSTPGVTEITEQLHRAGFSRWGNERVYNGRSGEMMRSMIFMGP 501


>ref|XP_002883108.1| NRPD2a [Arabidopsis lyrata subsp. lyrata] gi|297328948|gb|EFH59367.1|
            NRPD2a [Arabidopsis lyrata subsp. lyrata]
          Length = 1169

 Score = 94.7 bits (234), Expect(2) = 5e-34
 Identities = 43/49 (87%), Positives = 46/49 (93%)
 Frame = +3

Query: 132  GATFYQRLTHMAEDKVKFRNTGPVHPLTRQPVADRKQFGGIKFGEME*D 278
            G TFYQRL HM+EDKVKFRNTGPVHPLTRQPVAD+K+FGGIKFGEME D
Sbjct: 1030 GPTFYQRLVHMSEDKVKFRNTGPVHPLTRQPVADKKRFGGIKFGEMERD 1078



 Score = 75.5 bits (184), Expect(2) = 5e-34
 Identities = 33/46 (71%), Positives = 38/46 (82%)
 Frame = +1

Query: 1    ATPFSTPSAEDITAQLHRLGYSRWGGERVYDGRTGEKVESLIFMGP 138
            ATPFSTP   +IT QLHR G+SRWG ERVY+GR+GE + SLIFMGP
Sbjct: 986  ATPFSTPGVTEITEQLHRAGFSRWGNERVYNGRSGEMMRSLIFMGP 1031


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