BLASTX nr result
ID: Mentha28_contig00012408
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Mentha28_contig00012408
(280 letters)
Database: ./nr
38,876,450 sequences; 13,856,398,315 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|EYU29217.1| hypothetical protein MIMGU_mgv1a000367mg [Mimulus... 99 3e-40
gb|AAY68200.1| RNA polymerase IV second largest subunit [Antirrh... 99 4e-40
gb|EPS73521.1| hypothetical protein M569_01229, partial [Genlise... 99 2e-38
ref|XP_003527775.1| PREDICTED: DNA-directed RNA polymerases IV a... 95 3e-35
ref|XP_003523670.1| PREDICTED: DNA-directed RNA polymerases IV a... 95 3e-35
ref|XP_004145500.1| PREDICTED: DNA-directed RNA polymerase D sub... 97 3e-35
ref|XP_007136942.1| hypothetical protein PHAVU_009G087100g [Phas... 95 4e-35
gb|EXB86677.1| DNA-directed RNA polymerase D subunit 2a [Morus n... 96 5e-35
ref|XP_002515428.1| DNA-directed RNA polymerase subunit, putativ... 97 8e-35
ref|XP_006406653.1| hypothetical protein EUTSA_v10019931mg [Eutr... 96 8e-35
ref|XP_006300099.1| hypothetical protein CARUB_v10016327mg [Caps... 96 8e-35
ref|XP_003603295.1| DNA-directed RNA polymerase subunit beta [Me... 95 1e-34
ref|XP_004288915.1| PREDICTED: DNA-directed RNA polymerase D sub... 96 1e-34
ref|XP_004501385.1| PREDICTED: DNA-directed RNA polymerase D sub... 95 1e-34
gb|AAY68198.1| RNA polymerase IV second largest subunit [Rhodode... 98 2e-34
ref|XP_006442883.1| hypothetical protein CICLE_v10018562mg [Citr... 96 3e-34
ref|XP_007011717.1| DNA-directed RNA polymerase isoform 1 [Theob... 96 3e-34
ref|NP_189020.2| nuclear RNA polymerase D2A [Arabidopsis thalian... 96 4e-34
dbj|BAD43874.1| putative DNA-directed RNA polymerase subunit [Ar... 96 4e-34
ref|XP_002883108.1| NRPD2a [Arabidopsis lyrata subsp. lyrata] gi... 95 5e-34
>gb|EYU29217.1| hypothetical protein MIMGU_mgv1a000367mg [Mimulus guttatus]
Length = 1211
Score = 99.0 bits (245), Expect(2) = 3e-40
Identities = 46/49 (93%), Positives = 47/49 (95%)
Frame = +3
Query: 132 GATFYQRLTHMAEDKVKFRNTGPVHPLTRQPVADRKQFGGIKFGEME*D 278
G TFYQRLTHMAEDKVKFRNTGPVHPLTRQPVADRK+FGGIKFGEME D
Sbjct: 1070 GPTFYQRLTHMAEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERD 1118
Score = 92.4 bits (228), Expect(2) = 3e-40
Identities = 42/46 (91%), Positives = 44/46 (95%)
Frame = +1
Query: 1 ATPFSTPSAEDITAQLHRLGYSRWGGERVYDGRTGEKVESLIFMGP 138
ATPFS+PS EDITAQLHRLG+SRWGGERVYDGRTGEKV SLIFMGP
Sbjct: 1026 ATPFSSPSVEDITAQLHRLGFSRWGGERVYDGRTGEKVNSLIFMGP 1071
>gb|AAY68200.1| RNA polymerase IV second largest subunit [Antirrhinum majus]
Length = 821
Score = 98.6 bits (244), Expect(2) = 4e-40
Identities = 45/49 (91%), Positives = 47/49 (95%)
Frame = +3
Query: 132 GATFYQRLTHMAEDKVKFRNTGPVHPLTRQPVADRKQFGGIKFGEME*D 278
G TFYQRLTHMAEDK+KFRNTGPVHPLTRQPVADRK+FGGIKFGEME D
Sbjct: 682 GPTFYQRLTHMAEDKIKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERD 730
Score = 92.0 bits (227), Expect(2) = 4e-40
Identities = 42/46 (91%), Positives = 44/46 (95%)
Frame = +1
Query: 1 ATPFSTPSAEDITAQLHRLGYSRWGGERVYDGRTGEKVESLIFMGP 138
ATPFSTPS +DITAQLHRLG+SRWG ERVYDGRTGEKVESLIFMGP
Sbjct: 638 ATPFSTPSVDDITAQLHRLGFSRWGDERVYDGRTGEKVESLIFMGP 683
>gb|EPS73521.1| hypothetical protein M569_01229, partial [Genlisea aurea]
Length = 1205
Score = 99.0 bits (245), Expect(2) = 2e-38
Identities = 46/49 (93%), Positives = 47/49 (95%)
Frame = +3
Query: 132 GATFYQRLTHMAEDKVKFRNTGPVHPLTRQPVADRKQFGGIKFGEME*D 278
G TFYQRLTHMAEDKVKFRNTGPVHPLTRQPVADRK+FGGIKFGEME D
Sbjct: 1066 GPTFYQRLTHMAEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERD 1114
Score = 85.9 bits (211), Expect(2) = 2e-38
Identities = 38/46 (82%), Positives = 43/46 (93%)
Frame = +1
Query: 1 ATPFSTPSAEDITAQLHRLGYSRWGGERVYDGRTGEKVESLIFMGP 138
ATPFS+PS EDITAQLHRLG+SRWG E+VYDGRTGE ++SLIFMGP
Sbjct: 1022 ATPFSSPSVEDITAQLHRLGFSRWGAEKVYDGRTGEALKSLIFMGP 1067
>ref|XP_003527775.1| PREDICTED: DNA-directed RNA polymerases IV and V subunit 2-like
[Glycine max]
Length = 1205
Score = 95.1 bits (235), Expect(2) = 3e-35
Identities = 44/49 (89%), Positives = 46/49 (93%)
Frame = +3
Query: 132 GATFYQRLTHMAEDKVKFRNTGPVHPLTRQPVADRKQFGGIKFGEME*D 278
G TFYQRL HM+EDKVKFRNTGPVHPLTRQPVADRK+FGGIKFGEME D
Sbjct: 1066 GPTFYQRLHHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERD 1114
Score = 79.3 bits (194), Expect(2) = 3e-35
Identities = 36/46 (78%), Positives = 39/46 (84%)
Frame = +1
Query: 1 ATPFSTPSAEDITAQLHRLGYSRWGGERVYDGRTGEKVESLIFMGP 138
ATPFSTPS + IT QLHR G+SRWG ERVY+GRTGE V SLIFMGP
Sbjct: 1022 ATPFSTPSVDAITEQLHRAGFSRWGNERVYNGRTGEMVRSLIFMGP 1067
>ref|XP_003523670.1| PREDICTED: DNA-directed RNA polymerases IV and V subunit 2-like
[Glycine max]
Length = 1205
Score = 95.1 bits (235), Expect(2) = 3e-35
Identities = 44/49 (89%), Positives = 46/49 (93%)
Frame = +3
Query: 132 GATFYQRLTHMAEDKVKFRNTGPVHPLTRQPVADRKQFGGIKFGEME*D 278
G TFYQRL HM+EDKVKFRNTGPVHPLTRQPVADRK+FGGIKFGEME D
Sbjct: 1066 GPTFYQRLHHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERD 1114
Score = 79.3 bits (194), Expect(2) = 3e-35
Identities = 36/46 (78%), Positives = 39/46 (84%)
Frame = +1
Query: 1 ATPFSTPSAEDITAQLHRLGYSRWGGERVYDGRTGEKVESLIFMGP 138
ATPFSTPS + IT QLHR G+SRWG ERVY+GRTGE V SLIFMGP
Sbjct: 1022 ATPFSTPSVDAITEQLHRAGFSRWGNERVYNGRTGEMVRSLIFMGP 1067
>ref|XP_004145500.1| PREDICTED: DNA-directed RNA polymerase D subunit 2a-like [Cucumis
sativus]
Length = 1197
Score = 96.7 bits (239), Expect(2) = 3e-35
Identities = 45/49 (91%), Positives = 46/49 (93%)
Frame = +3
Query: 132 GATFYQRLTHMAEDKVKFRNTGPVHPLTRQPVADRKQFGGIKFGEME*D 278
G TFYQRL HMAEDKVKFRNTGPVHPLTRQPVADRK+FGGIKFGEME D
Sbjct: 1058 GPTFYQRLIHMAEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERD 1106
Score = 77.8 bits (190), Expect(2) = 3e-35
Identities = 35/46 (76%), Positives = 39/46 (84%)
Frame = +1
Query: 1 ATPFSTPSAEDITAQLHRLGYSRWGGERVYDGRTGEKVESLIFMGP 138
ATPFSTPS + IT QLHR G+SRWG ERVY+GRTGE + SLIFMGP
Sbjct: 1014 ATPFSTPSVDAITDQLHRAGFSRWGSERVYNGRTGEMMRSLIFMGP 1059
>ref|XP_007136942.1| hypothetical protein PHAVU_009G087100g [Phaseolus vulgaris]
gi|561010029|gb|ESW08936.1| hypothetical protein
PHAVU_009G087100g [Phaseolus vulgaris]
Length = 1202
Score = 95.1 bits (235), Expect(2) = 4e-35
Identities = 44/49 (89%), Positives = 46/49 (93%)
Frame = +3
Query: 132 GATFYQRLTHMAEDKVKFRNTGPVHPLTRQPVADRKQFGGIKFGEME*D 278
G TFYQRL HM+EDKVKFRNTGPVHPLTRQPVADRK+FGGIKFGEME D
Sbjct: 1063 GPTFYQRLHHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERD 1111
Score = 79.0 bits (193), Expect(2) = 4e-35
Identities = 36/46 (78%), Positives = 39/46 (84%)
Frame = +1
Query: 1 ATPFSTPSAEDITAQLHRLGYSRWGGERVYDGRTGEKVESLIFMGP 138
ATPFSTPS + IT QLHR G+SRWG ERVY+GRTGE V SLIFMGP
Sbjct: 1019 ATPFSTPSVDAITDQLHRAGFSRWGNERVYNGRTGEMVRSLIFMGP 1064
>gb|EXB86677.1| DNA-directed RNA polymerase D subunit 2a [Morus notabilis]
Length = 1196
Score = 95.5 bits (236), Expect(2) = 5e-35
Identities = 43/49 (87%), Positives = 46/49 (93%)
Frame = +3
Query: 132 GATFYQRLTHMAEDKVKFRNTGPVHPLTRQPVADRKQFGGIKFGEME*D 278
G TFYQRL HM+EDKVKFRNTGPVHPLTRQPVADRK+FGG+KFGEME D
Sbjct: 1057 GPTFYQRLVHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGVKFGEMERD 1105
Score = 78.2 bits (191), Expect(2) = 5e-35
Identities = 35/46 (76%), Positives = 39/46 (84%)
Frame = +1
Query: 1 ATPFSTPSAEDITAQLHRLGYSRWGGERVYDGRTGEKVESLIFMGP 138
ATPFSTPS + IT QLH+ G+SRWG ERVY+GRTGE V SLIFMGP
Sbjct: 1013 ATPFSTPSVDAITEQLHKAGFSRWGNERVYNGRTGEMVRSLIFMGP 1058
>ref|XP_002515428.1| DNA-directed RNA polymerase subunit, putative [Ricinus communis]
gi|223545372|gb|EEF46877.1| DNA-directed RNA polymerase
subunit, putative [Ricinus communis]
Length = 1203
Score = 96.7 bits (239), Expect(2) = 8e-35
Identities = 45/49 (91%), Positives = 46/49 (93%)
Frame = +3
Query: 132 GATFYQRLTHMAEDKVKFRNTGPVHPLTRQPVADRKQFGGIKFGEME*D 278
G TFYQRL HMAEDKVKFRNTGPVHPLTRQPVADRK+FGGIKFGEME D
Sbjct: 1064 GPTFYQRLIHMAEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERD 1112
Score = 76.3 bits (186), Expect(2) = 8e-35
Identities = 36/46 (78%), Positives = 38/46 (82%)
Frame = +1
Query: 1 ATPFSTPSAEDITAQLHRLGYSRWGGERVYDGRTGEKVESLIFMGP 138
ATPFST S E IT QLHR G+SRWG ERVY+GRTGE V SLIFMGP
Sbjct: 1020 ATPFSTLSVEAITNQLHRAGFSRWGNERVYNGRTGEMVRSLIFMGP 1065
>ref|XP_006406653.1| hypothetical protein EUTSA_v10019931mg [Eutrema salsugineum]
gi|557107799|gb|ESQ48106.1| hypothetical protein
EUTSA_v10019931mg [Eutrema salsugineum]
Length = 1169
Score = 95.9 bits (237), Expect(2) = 8e-35
Identities = 44/49 (89%), Positives = 46/49 (93%)
Frame = +3
Query: 132 GATFYQRLTHMAEDKVKFRNTGPVHPLTRQPVADRKQFGGIKFGEME*D 278
G TFYQRL HM+EDKVKFRNTGPVHPLTRQPVADRK+FGGIKFGEME D
Sbjct: 1029 GPTFYQRLVHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERD 1077
Score = 77.0 bits (188), Expect(2) = 8e-35
Identities = 34/46 (73%), Positives = 39/46 (84%)
Frame = +1
Query: 1 ATPFSTPSAEDITAQLHRLGYSRWGGERVYDGRTGEKVESLIFMGP 138
ATPFSTPS +IT QLHR G+SRWG ERVY+GR+GE + SLIFMGP
Sbjct: 985 ATPFSTPSVSEITDQLHRAGFSRWGNERVYNGRSGEMMRSLIFMGP 1030
>ref|XP_006300099.1| hypothetical protein CARUB_v10016327mg [Capsella rubella]
gi|482568808|gb|EOA32997.1| hypothetical protein
CARUB_v10016327mg [Capsella rubella]
Length = 1161
Score = 95.9 bits (237), Expect(2) = 8e-35
Identities = 44/49 (89%), Positives = 46/49 (93%)
Frame = +3
Query: 132 GATFYQRLTHMAEDKVKFRNTGPVHPLTRQPVADRKQFGGIKFGEME*D 278
G TFYQRL HM+EDKVKFRNTGPVHPLTRQPVADRK+FGGIKFGEME D
Sbjct: 1022 GPTFYQRLVHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERD 1070
Score = 77.0 bits (188), Expect(2) = 8e-35
Identities = 34/46 (73%), Positives = 39/46 (84%)
Frame = +1
Query: 1 ATPFSTPSAEDITAQLHRLGYSRWGGERVYDGRTGEKVESLIFMGP 138
ATPFSTPS +IT QLHR G+SRWG ERVY+GR+GE + SLIFMGP
Sbjct: 978 ATPFSTPSISEITEQLHRAGFSRWGNERVYNGRSGEMMRSLIFMGP 1023
>ref|XP_003603295.1| DNA-directed RNA polymerase subunit beta [Medicago truncatula]
gi|355492343|gb|AES73546.1| DNA-directed RNA polymerase
subunit beta [Medicago truncatula]
Length = 1237
Score = 95.1 bits (235), Expect(2) = 1e-34
Identities = 44/49 (89%), Positives = 46/49 (93%)
Frame = +3
Query: 132 GATFYQRLTHMAEDKVKFRNTGPVHPLTRQPVADRKQFGGIKFGEME*D 278
G TFYQRL HM+EDKVKFRNTGPVHPLTRQPVADRK+FGGIKFGEME D
Sbjct: 1098 GPTFYQRLHHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERD 1146
Score = 77.0 bits (188), Expect(2) = 1e-34
Identities = 36/46 (78%), Positives = 38/46 (82%)
Frame = +1
Query: 1 ATPFSTPSAEDITAQLHRLGYSRWGGERVYDGRTGEKVESLIFMGP 138
ATPFST S E IT QLHR G+SRWG ERVY+GRTGE V SLIFMGP
Sbjct: 1054 ATPFSTSSVEAITDQLHRAGFSRWGNERVYNGRTGEMVRSLIFMGP 1099
>ref|XP_004288915.1| PREDICTED: DNA-directed RNA polymerase D subunit 2a-like [Fragaria
vesca subsp. vesca]
Length = 1201
Score = 95.5 bits (236), Expect(2) = 1e-34
Identities = 44/49 (89%), Positives = 46/49 (93%)
Frame = +3
Query: 132 GATFYQRLTHMAEDKVKFRNTGPVHPLTRQPVADRKQFGGIKFGEME*D 278
G TFYQRL HM+EDKVKFRNTGPVHPLTRQPVADRK+FGGIKFGEME D
Sbjct: 1062 GPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERD 1110
Score = 76.6 bits (187), Expect(2) = 1e-34
Identities = 35/46 (76%), Positives = 38/46 (82%)
Frame = +1
Query: 1 ATPFSTPSAEDITAQLHRLGYSRWGGERVYDGRTGEKVESLIFMGP 138
ATPFST S +DIT QLHR G+SRWG ERVY+GRTGE V LIFMGP
Sbjct: 1018 ATPFSTLSVDDITDQLHRAGFSRWGNERVYNGRTGEMVRQLIFMGP 1063
>ref|XP_004501385.1| PREDICTED: DNA-directed RNA polymerase D subunit 2a-like [Cicer
arietinum]
Length = 1199
Score = 95.1 bits (235), Expect(2) = 1e-34
Identities = 44/49 (89%), Positives = 46/49 (93%)
Frame = +3
Query: 132 GATFYQRLTHMAEDKVKFRNTGPVHPLTRQPVADRKQFGGIKFGEME*D 278
G TFYQRL HM+EDKVKFRNTGPVHPLTRQPVADRK+FGGIKFGEME D
Sbjct: 1060 GPTFYQRLHHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERD 1108
Score = 77.0 bits (188), Expect(2) = 1e-34
Identities = 36/46 (78%), Positives = 38/46 (82%)
Frame = +1
Query: 1 ATPFSTPSAEDITAQLHRLGYSRWGGERVYDGRTGEKVESLIFMGP 138
ATPFST S E IT QLHR G+SRWG ERVY+GRTGE V SLIFMGP
Sbjct: 1016 ATPFSTSSVEAITDQLHRAGFSRWGNERVYNGRTGEMVRSLIFMGP 1061
>gb|AAY68198.1| RNA polymerase IV second largest subunit [Rhododendron macrophyllum]
Length = 1019
Score = 97.8 bits (242), Expect(2) = 2e-34
Identities = 45/49 (91%), Positives = 47/49 (95%)
Frame = +3
Query: 132 GATFYQRLTHMAEDKVKFRNTGPVHPLTRQPVADRKQFGGIKFGEME*D 278
G TFYQRLTHM+EDKVKFRNTGPVHPLTRQPVADRK+FGGIKFGEME D
Sbjct: 880 GPTFYQRLTHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERD 928
Score = 73.9 bits (180), Expect(2) = 2e-34
Identities = 32/46 (69%), Positives = 38/46 (82%)
Frame = +1
Query: 1 ATPFSTPSAEDITAQLHRLGYSRWGGERVYDGRTGEKVESLIFMGP 138
ATPFST S + +T QLHR G+SRWG ERVY+GRTGE + SL+FMGP
Sbjct: 836 ATPFSTLSVDAVTDQLHRAGFSRWGSERVYNGRTGEMIHSLVFMGP 881
>ref|XP_006442883.1| hypothetical protein CICLE_v10018562mg [Citrus clementina]
gi|568850178|ref|XP_006478802.1| PREDICTED: DNA-directed
RNA polymerases IV and V subunit 2-like [Citrus sinensis]
gi|557545145|gb|ESR56123.1| hypothetical protein
CICLE_v10018562mg [Citrus clementina]
Length = 1198
Score = 95.5 bits (236), Expect(2) = 3e-34
Identities = 44/49 (89%), Positives = 46/49 (93%)
Frame = +3
Query: 132 GATFYQRLTHMAEDKVKFRNTGPVHPLTRQPVADRKQFGGIKFGEME*D 278
G TFYQRL HM+EDKVKFRNTGPVHPLTRQPVADRK+FGGIKFGEME D
Sbjct: 1059 GPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERD 1107
Score = 75.5 bits (184), Expect(2) = 3e-34
Identities = 33/46 (71%), Positives = 39/46 (84%)
Frame = +1
Query: 1 ATPFSTPSAEDITAQLHRLGYSRWGGERVYDGRTGEKVESLIFMGP 138
ATPF+TPS + IT QLHR G+S+WG ER+YDGRTGE V SLIF+GP
Sbjct: 1015 ATPFATPSVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGP 1060
>ref|XP_007011717.1| DNA-directed RNA polymerase isoform 1 [Theobroma cacao]
gi|508782080|gb|EOY29336.1| DNA-directed RNA polymerase
isoform 1 [Theobroma cacao]
Length = 1184
Score = 95.5 bits (236), Expect(2) = 3e-34
Identities = 44/49 (89%), Positives = 46/49 (93%)
Frame = +3
Query: 132 GATFYQRLTHMAEDKVKFRNTGPVHPLTRQPVADRKQFGGIKFGEME*D 278
G TFYQRL HMAEDKVKFRNTGPVHPLTRQPVADRK++GGIKFGEME D
Sbjct: 1045 GPTFYQRLIHMAEDKVKFRNTGPVHPLTRQPVADRKRYGGIKFGEMERD 1093
Score = 75.5 bits (184), Expect(2) = 3e-34
Identities = 35/46 (76%), Positives = 38/46 (82%)
Frame = +1
Query: 1 ATPFSTPSAEDITAQLHRLGYSRWGGERVYDGRTGEKVESLIFMGP 138
ATPFST S + IT QLHR G+SRWG ERVY+GRTGE V SLIFMGP
Sbjct: 1001 ATPFSTISVDAITEQLHRAGFSRWGNERVYNGRTGEMVRSLIFMGP 1046
>ref|NP_189020.2| nuclear RNA polymerase D2A [Arabidopsis thaliana]
gi|334185578|ref|NP_001189957.1| nuclear RNA polymerase
D2A [Arabidopsis thaliana]
gi|75335101|sp|Q9LK40.1|NRPD2_ARATH RecName:
Full=DNA-directed RNA polymerases IV and V subunit 2;
AltName: Full=DNA-directed RNA polymerase D subunit 2a;
Short=AtNRPD2a; Short=Nuclear RNA polymerase D 2a;
AltName: Full=Nuclear RNA polymerase E 2; AltName:
Full=Protein DEFECTIVE IN MERISTEM SILENCING 2; AltName:
Full=Protein DEFECTIVE IN RNA-DIRECTED DNA METHYLATION 2;
AltName: Full=RNA polymerase IV subunit 2a; Short=POL IV
2a gi|9293951|dbj|BAB01854.1| DNA-directed RNA
polymerase, subunit B [Arabidopsis thaliana]
gi|57791156|gb|AAW56422.1| polymerase IV second largest
subunit [Arabidopsis thaliana] gi|62183738|gb|AAX73261.1|
RNA polymerase IV second-largest subunit [Arabidopsis
thaliana] gi|332643291|gb|AEE76812.1| nuclear RNA
polymerase D2A [Arabidopsis thaliana]
gi|332643292|gb|AEE76813.1| nuclear RNA polymerase D2A
[Arabidopsis thaliana]
Length = 1172
Score = 95.9 bits (237), Expect(2) = 4e-34
Identities = 44/49 (89%), Positives = 46/49 (93%)
Frame = +3
Query: 132 GATFYQRLTHMAEDKVKFRNTGPVHPLTRQPVADRKQFGGIKFGEME*D 278
G TFYQRL HM+EDKVKFRNTGPVHPLTRQPVADRK+FGGIKFGEME D
Sbjct: 1033 GPTFYQRLVHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERD 1081
Score = 74.7 bits (182), Expect(2) = 4e-34
Identities = 32/46 (69%), Positives = 38/46 (82%)
Frame = +1
Query: 1 ATPFSTPSAEDITAQLHRLGYSRWGGERVYDGRTGEKVESLIFMGP 138
ATPFSTP +IT QLHR G+SRWG ERVY+GR+GE + S+IFMGP
Sbjct: 989 ATPFSTPGVTEITEQLHRAGFSRWGNERVYNGRSGEMMRSMIFMGP 1034
>dbj|BAD43874.1| putative DNA-directed RNA polymerase subunit [Arabidopsis thaliana]
Length = 639
Score = 95.9 bits (237), Expect(2) = 4e-34
Identities = 44/49 (89%), Positives = 46/49 (93%)
Frame = +3
Query: 132 GATFYQRLTHMAEDKVKFRNTGPVHPLTRQPVADRKQFGGIKFGEME*D 278
G TFYQRL HM+EDKVKFRNTGPVHPLTRQPVADRK+FGGIKFGEME D
Sbjct: 500 GPTFYQRLVHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERD 548
Score = 74.7 bits (182), Expect(2) = 4e-34
Identities = 32/46 (69%), Positives = 38/46 (82%)
Frame = +1
Query: 1 ATPFSTPSAEDITAQLHRLGYSRWGGERVYDGRTGEKVESLIFMGP 138
ATPFSTP +IT QLHR G+SRWG ERVY+GR+GE + S+IFMGP
Sbjct: 456 ATPFSTPGVTEITEQLHRAGFSRWGNERVYNGRSGEMMRSMIFMGP 501
>ref|XP_002883108.1| NRPD2a [Arabidopsis lyrata subsp. lyrata] gi|297328948|gb|EFH59367.1|
NRPD2a [Arabidopsis lyrata subsp. lyrata]
Length = 1169
Score = 94.7 bits (234), Expect(2) = 5e-34
Identities = 43/49 (87%), Positives = 46/49 (93%)
Frame = +3
Query: 132 GATFYQRLTHMAEDKVKFRNTGPVHPLTRQPVADRKQFGGIKFGEME*D 278
G TFYQRL HM+EDKVKFRNTGPVHPLTRQPVAD+K+FGGIKFGEME D
Sbjct: 1030 GPTFYQRLVHMSEDKVKFRNTGPVHPLTRQPVADKKRFGGIKFGEMERD 1078
Score = 75.5 bits (184), Expect(2) = 5e-34
Identities = 33/46 (71%), Positives = 38/46 (82%)
Frame = +1
Query: 1 ATPFSTPSAEDITAQLHRLGYSRWGGERVYDGRTGEKVESLIFMGP 138
ATPFSTP +IT QLHR G+SRWG ERVY+GR+GE + SLIFMGP
Sbjct: 986 ATPFSTPGVTEITEQLHRAGFSRWGNERVYNGRSGEMMRSLIFMGP 1031