BLASTX nr result
ID: Mentha28_contig00011812
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Mentha28_contig00011812
(518 letters)
Database: ./nr
38,876,450 sequences; 13,856,398,315 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|EPS73521.1| hypothetical protein M569_01229, partial [Genlise... 225 1e-61
gb|AAY68200.1| RNA polymerase IV second largest subunit [Antirrh... 218 1e-59
gb|EYU29217.1| hypothetical protein MIMGU_mgv1a000367mg [Mimulus... 216 4e-59
ref|XP_004245914.1| PREDICTED: DNA-directed RNA polymerase D sub... 209 5e-57
ref|XP_002515428.1| DNA-directed RNA polymerase subunit, putativ... 209 5e-57
gb|AAY68198.1| RNA polymerase IV second largest subunit [Rhodode... 218 5e-57
ref|XP_006351506.1| PREDICTED: DNA-directed RNA polymerases IV a... 209 7e-57
ref|XP_004236361.1| PREDICTED: DNA-directed RNA polymerase D sub... 209 7e-57
emb|CBI21137.3| unnamed protein product [Vitis vinifera] 206 4e-56
ref|XP_002283296.1| PREDICTED: DNA-directed RNA polymerase D sub... 206 4e-56
ref|XP_006364477.1| PREDICTED: DNA-directed RNA polymerases IV a... 206 7e-56
gb|ABG29322.1| DNA-directed RNA polymerase II 135 kDa polypeptid... 206 8e-56
ref|XP_006442883.1| hypothetical protein CICLE_v10018562mg [Citr... 205 5e-55
ref|XP_002324332.2| DNA-directed RNA polymerase family protein [... 207 1e-54
ref|XP_007225442.1| hypothetical protein PRUPE_ppa000410mg [Prun... 201 7e-54
ref|XP_004288915.1| PREDICTED: DNA-directed RNA polymerase D sub... 199 9e-54
ref|XP_006300099.1| hypothetical protein CARUB_v10016327mg [Caps... 200 9e-54
dbj|BAD43874.1| putative DNA-directed RNA polymerase subunit [Ar... 197 2e-53
ref|NP_189020.2| nuclear RNA polymerase D2A [Arabidopsis thalian... 197 6e-53
ref|XP_002883108.1| NRPD2a [Arabidopsis lyrata subsp. lyrata] gi... 197 1e-52
>gb|EPS73521.1| hypothetical protein M569_01229, partial [Genlisea aurea]
Length = 1205
Score = 225 bits (573), Expect(2) = 1e-61
Identities = 107/123 (86%), Positives = 113/123 (91%)
Frame = -1
Query: 518 LTHMAEDKGKFRNTGPVHPLTRQPVADRKQFGGIKFGEME*DCLIAHGAAANLHERLFTL 339
LTHMAEDK KFRNTGPVHPLTRQPVADRK+FGGIKFGEME DCLIAHGAAANLHERLFTL
Sbjct: 1073 LTHMAEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTL 1132
Query: 338 RDSSQMHICRKCKKMANVIQRPVSGGKKIRGPYCRFCESVQDVVRVNVPYGAKLLARSSS 159
DSSQMHICRKCK MANVIQRPV GG+K+RGPYCRFCESV+DVVRVNVPYGAKLL +
Sbjct: 1133 SDSSQMHICRKCKNMANVIQRPVFGGRKVRGPYCRFCESVEDVVRVNVPYGAKLLCQELF 1192
Query: 158 AWG 150
+ G
Sbjct: 1193 SMG 1195
Score = 37.4 bits (85), Expect(2) = 1e-61
Identities = 15/18 (83%), Positives = 17/18 (94%)
Frame = -3
Query: 174 CQELFSMGISLSFETELC 121
CQELFSMGISL F+TE+C
Sbjct: 1188 CQELFSMGISLKFDTEIC 1205
>gb|AAY68200.1| RNA polymerase IV second largest subunit [Antirrhinum majus]
Length = 821
Score = 218 bits (554), Expect(2) = 1e-59
Identities = 103/123 (83%), Positives = 112/123 (91%)
Frame = -1
Query: 518 LTHMAEDKGKFRNTGPVHPLTRQPVADRKQFGGIKFGEME*DCLIAHGAAANLHERLFTL 339
LTHMAEDK KFRNTGPVHPLTRQPVADRK+FGGIKFGEME DCLIAHGAAANLHERLFTL
Sbjct: 689 LTHMAEDKIKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTL 748
Query: 338 RDSSQMHICRKCKKMANVIQRPVSGGKKIRGPYCRFCESVQDVVRVNVPYGAKLLARSSS 159
DSSQMH+CRKC+ MANVIQR V GG+KIRGPYCRFC+SV+DVVR+NVPYGAKLL +
Sbjct: 749 SDSSQMHVCRKCQNMANVIQRSVFGGRKIRGPYCRFCDSVEDVVRLNVPYGAKLLCQELF 808
Query: 158 AWG 150
+ G
Sbjct: 809 SMG 811
Score = 38.1 bits (87), Expect(2) = 1e-59
Identities = 16/18 (88%), Positives = 17/18 (94%)
Frame = -3
Query: 174 CQELFSMGISLSFETELC 121
CQELFSMGISL F+TELC
Sbjct: 804 CQELFSMGISLKFDTELC 821
>gb|EYU29217.1| hypothetical protein MIMGU_mgv1a000367mg [Mimulus guttatus]
Length = 1211
Score = 216 bits (549), Expect(2) = 4e-59
Identities = 106/125 (84%), Positives = 112/125 (89%), Gaps = 2/125 (1%)
Frame = -1
Query: 518 LTHMAEDKGKFRNTGPVHPLTRQPVADRKQFGGIKFGEME*DCLIAHGAAANLHERLFTL 339
LTHMAEDK KFRNTGPVHPLTRQPVADRK+FGGIKFGEME DCLIAHGAAANLHERLFTL
Sbjct: 1077 LTHMAEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTL 1136
Query: 338 RDSSQMHICRKCKKMANVIQRPVS--GGKKIRGPYCRFCESVQDVVRVNVPYGAKLLARS 165
DSSQMHICRKCK MANVIQRP S GG+KIRGP+CR CESV+DVVRVNVPYGAKLL +
Sbjct: 1137 SDSSQMHICRKCKNMANVIQRPGSGGGGRKIRGPFCRVCESVEDVVRVNVPYGAKLLCQE 1196
Query: 164 SSAWG 150
+ G
Sbjct: 1197 LFSMG 1201
Score = 38.1 bits (87), Expect(2) = 4e-59
Identities = 16/18 (88%), Positives = 17/18 (94%)
Frame = -3
Query: 174 CQELFSMGISLSFETELC 121
CQELFSMGISL F+TELC
Sbjct: 1194 CQELFSMGISLKFDTELC 1211
>ref|XP_004245914.1| PREDICTED: DNA-directed RNA polymerase D subunit 2a-like [Solanum
lycopersicum]
Length = 1219
Score = 209 bits (533), Expect(2) = 5e-57
Identities = 101/123 (82%), Positives = 109/123 (88%)
Frame = -1
Query: 518 LTHMAEDKGKFRNTGPVHPLTRQPVADRKQFGGIKFGEME*DCLIAHGAAANLHERLFTL 339
L HMAEDK KFRNTGPVHPLTRQPVADRK+FGGIKFGEME DCLIAHGAAANLHERLFTL
Sbjct: 1088 LIHMAEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTL 1147
Query: 338 RDSSQMHICRKCKKMANVIQRPVSGGKKIRGPYCRFCESVQDVVRVNVPYGAKLLARSSS 159
DSSQMHIC KCK MANVIQRPV GG K+RGP+CRFCESV+D+V+V VPYGAKLL +
Sbjct: 1148 SDSSQMHICGKCKNMANVIQRPVPGG-KVRGPFCRFCESVEDIVKVGVPYGAKLLCQELF 1206
Query: 158 AWG 150
+ G
Sbjct: 1207 SMG 1209
Score = 37.4 bits (85), Expect(2) = 5e-57
Identities = 15/18 (83%), Positives = 17/18 (94%)
Frame = -3
Query: 174 CQELFSMGISLSFETELC 121
CQELFSMGISL F+TE+C
Sbjct: 1202 CQELFSMGISLKFDTEIC 1219
>ref|XP_002515428.1| DNA-directed RNA polymerase subunit, putative [Ricinus communis]
gi|223545372|gb|EEF46877.1| DNA-directed RNA polymerase
subunit, putative [Ricinus communis]
Length = 1203
Score = 209 bits (533), Expect(2) = 5e-57
Identities = 99/123 (80%), Positives = 109/123 (88%)
Frame = -1
Query: 518 LTHMAEDKGKFRNTGPVHPLTRQPVADRKQFGGIKFGEME*DCLIAHGAAANLHERLFTL 339
L HMAEDK KFRNTGPVHPLTRQPVADRK+FGGIKFGEME DCLIAHGA+ANLHERLFTL
Sbjct: 1071 LIHMAEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGASANLHERLFTL 1130
Query: 338 RDSSQMHICRKCKKMANVIQRPVSGGKKIRGPYCRFCESVQDVVRVNVPYGAKLLARSSS 159
DSSQMHIC+KCK +ANVIQR V GG+KIRGPYCR CESV ++V+VNVPYGAKLL +
Sbjct: 1131 SDSSQMHICQKCKNVANVIQRAVPGGRKIRGPYCRVCESVDEIVKVNVPYGAKLLCQELF 1190
Query: 158 AWG 150
+ G
Sbjct: 1191 SMG 1193
Score = 37.4 bits (85), Expect(2) = 5e-57
Identities = 16/18 (88%), Positives = 16/18 (88%)
Frame = -3
Query: 174 CQELFSMGISLSFETELC 121
CQELFSMGISL FET LC
Sbjct: 1186 CQELFSMGISLKFETRLC 1203
>gb|AAY68198.1| RNA polymerase IV second largest subunit [Rhododendron macrophyllum]
Length = 1019
Score = 218 bits (554), Expect(2) = 5e-57
Identities = 103/123 (83%), Positives = 112/123 (91%)
Frame = -1
Query: 518 LTHMAEDKGKFRNTGPVHPLTRQPVADRKQFGGIKFGEME*DCLIAHGAAANLHERLFTL 339
LTHM+EDK KFRNTGPVHPLTRQPVADRK+FGGIKFGEME DCLIAHGAAANLHERLFTL
Sbjct: 887 LTHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTL 946
Query: 338 RDSSQMHICRKCKKMANVIQRPVSGGKKIRGPYCRFCESVQDVVRVNVPYGAKLLARSSS 159
DSSQMHICRKC +ANVIQR V GG+KIRGPYCRFCESV+++VRVNVPYGAKLLA+
Sbjct: 947 SDSSQMHICRKCNNIANVIQRAVPGGRKIRGPYCRFCESVEEIVRVNVPYGAKLLAQELF 1006
Query: 158 AWG 150
+ G
Sbjct: 1007 SMG 1009
Score = 29.3 bits (64), Expect(2) = 5e-57
Identities = 12/16 (75%), Positives = 15/16 (93%)
Frame = -3
Query: 171 QELFSMGISLSFETEL 124
QELFSMGI++ F+TEL
Sbjct: 1003 QELFSMGITMKFDTEL 1018
>ref|XP_006351506.1| PREDICTED: DNA-directed RNA polymerases IV and V subunit 2-like
[Solanum tuberosum]
Length = 1217
Score = 209 bits (532), Expect(2) = 7e-57
Identities = 101/123 (82%), Positives = 109/123 (88%)
Frame = -1
Query: 518 LTHMAEDKGKFRNTGPVHPLTRQPVADRKQFGGIKFGEME*DCLIAHGAAANLHERLFTL 339
L HMAEDK KFRNTGPVHPLTRQPVADRK+FGGIKFGEME DCLIAHGAAANLHERLFTL
Sbjct: 1086 LIHMAEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTL 1145
Query: 338 RDSSQMHICRKCKKMANVIQRPVSGGKKIRGPYCRFCESVQDVVRVNVPYGAKLLARSSS 159
DSSQMHIC KCK MANVIQR V GG K+RGP+CRFCESV+D+V+VNVPYGAKLL +
Sbjct: 1146 SDSSQMHICGKCKNMANVIQRTVQGG-KVRGPFCRFCESVEDIVKVNVPYGAKLLCQELF 1204
Query: 158 AWG 150
+ G
Sbjct: 1205 SMG 1207
Score = 37.4 bits (85), Expect(2) = 7e-57
Identities = 15/18 (83%), Positives = 17/18 (94%)
Frame = -3
Query: 174 CQELFSMGISLSFETELC 121
CQELFSMGISL F+TE+C
Sbjct: 1200 CQELFSMGISLKFDTEIC 1217
>ref|XP_004236361.1| PREDICTED: DNA-directed RNA polymerase D subunit 2a [Solanum
lycopersicum]
Length = 1217
Score = 209 bits (532), Expect(2) = 7e-57
Identities = 101/123 (82%), Positives = 109/123 (88%)
Frame = -1
Query: 518 LTHMAEDKGKFRNTGPVHPLTRQPVADRKQFGGIKFGEME*DCLIAHGAAANLHERLFTL 339
L HMAEDK KFRNTGPVHPLTRQPVADRK+FGGIKFGEME DCLIAHGAAANLHERLFTL
Sbjct: 1086 LIHMAEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTL 1145
Query: 338 RDSSQMHICRKCKKMANVIQRPVSGGKKIRGPYCRFCESVQDVVRVNVPYGAKLLARSSS 159
DSSQMHIC KCK MANVIQR V GG K+RGP+CRFCESV+D+V+VNVPYGAKLL +
Sbjct: 1146 SDSSQMHICGKCKNMANVIQRTVQGG-KVRGPFCRFCESVEDIVKVNVPYGAKLLCQELF 1204
Query: 158 AWG 150
+ G
Sbjct: 1205 SMG 1207
Score = 37.4 bits (85), Expect(2) = 7e-57
Identities = 15/18 (83%), Positives = 17/18 (94%)
Frame = -3
Query: 174 CQELFSMGISLSFETELC 121
CQELFSMGISL F+TE+C
Sbjct: 1200 CQELFSMGISLKFDTEIC 1217
>emb|CBI21137.3| unnamed protein product [Vitis vinifera]
Length = 1220
Score = 206 bits (523), Expect(2) = 4e-56
Identities = 94/123 (76%), Positives = 110/123 (89%)
Frame = -1
Query: 518 LTHMAEDKGKFRNTGPVHPLTRQPVADRKQFGGIKFGEME*DCLIAHGAAANLHERLFTL 339
L HMAEDK KFRNTGPVHPLTRQPV+DRK+FGGIKFGEME DCLIAHGAAANLHERLFTL
Sbjct: 1088 LIHMAEDKVKFRNTGPVHPLTRQPVSDRKRFGGIKFGEMERDCLIAHGAAANLHERLFTL 1147
Query: 338 RDSSQMHICRKCKKMANVIQRPVSGGKKIRGPYCRFCESVQDVVRVNVPYGAKLLARSSS 159
DS+ MHICR+CK ++NVIQR V+GG+K+RGPYCR+CES +++V+VNVPYGAKLL +
Sbjct: 1148 SDSAYMHICRRCKNISNVIQRSVAGGRKVRGPYCRYCESSEEIVKVNVPYGAKLLCQELF 1207
Query: 158 AWG 150
+ G
Sbjct: 1208 SMG 1210
Score = 38.1 bits (87), Expect(2) = 4e-56
Identities = 16/18 (88%), Positives = 17/18 (94%)
Frame = -3
Query: 174 CQELFSMGISLSFETELC 121
CQELFSMGISL FET+LC
Sbjct: 1203 CQELFSMGISLKFETQLC 1220
>ref|XP_002283296.1| PREDICTED: DNA-directed RNA polymerase D subunit 2a-like [Vitis
vinifera]
Length = 1198
Score = 206 bits (523), Expect(2) = 4e-56
Identities = 94/123 (76%), Positives = 110/123 (89%)
Frame = -1
Query: 518 LTHMAEDKGKFRNTGPVHPLTRQPVADRKQFGGIKFGEME*DCLIAHGAAANLHERLFTL 339
L HMAEDK KFRNTGPVHPLTRQPV+DRK+FGGIKFGEME DCLIAHGAAANLHERLFTL
Sbjct: 1066 LIHMAEDKVKFRNTGPVHPLTRQPVSDRKRFGGIKFGEMERDCLIAHGAAANLHERLFTL 1125
Query: 338 RDSSQMHICRKCKKMANVIQRPVSGGKKIRGPYCRFCESVQDVVRVNVPYGAKLLARSSS 159
DS+ MHICR+CK ++NVIQR V+GG+K+RGPYCR+CES +++V+VNVPYGAKLL +
Sbjct: 1126 SDSAYMHICRRCKNISNVIQRSVAGGRKVRGPYCRYCESSEEIVKVNVPYGAKLLCQELF 1185
Query: 158 AWG 150
+ G
Sbjct: 1186 SMG 1188
Score = 38.1 bits (87), Expect(2) = 4e-56
Identities = 16/18 (88%), Positives = 17/18 (94%)
Frame = -3
Query: 174 CQELFSMGISLSFETELC 121
CQELFSMGISL FET+LC
Sbjct: 1181 CQELFSMGISLKFETQLC 1198
>ref|XP_006364477.1| PREDICTED: DNA-directed RNA polymerases IV and V subunit 2-like
[Solanum tuberosum]
Length = 1219
Score = 206 bits (523), Expect(2) = 7e-56
Identities = 100/123 (81%), Positives = 108/123 (87%)
Frame = -1
Query: 518 LTHMAEDKGKFRNTGPVHPLTRQPVADRKQFGGIKFGEME*DCLIAHGAAANLHERLFTL 339
L HMAEDK KFRNTGPVHPLTRQPVADRK+FGGIKFGEME DCLIAHGAAANLHERLFTL
Sbjct: 1088 LIHMAEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTL 1147
Query: 338 RDSSQMHICRKCKKMANVIQRPVSGGKKIRGPYCRFCESVQDVVRVNVPYGAKLLARSSS 159
DSSQMHIC KCK MANVIQR GG KIRGP+CRFCESV+D+V+V+VPYGAKLL +
Sbjct: 1148 SDSSQMHICGKCKNMANVIQRSAPGG-KIRGPFCRFCESVEDIVKVDVPYGAKLLCQELF 1206
Query: 158 AWG 150
+ G
Sbjct: 1207 SMG 1209
Score = 37.4 bits (85), Expect(2) = 7e-56
Identities = 15/18 (83%), Positives = 17/18 (94%)
Frame = -3
Query: 174 CQELFSMGISLSFETELC 121
CQELFSMGISL F+TE+C
Sbjct: 1202 CQELFSMGISLKFDTEIC 1219
>gb|ABG29322.1| DNA-directed RNA polymerase II 135 kDa polypeptide, putative
[Solanum bulbocastanum]
Length = 304
Score = 206 bits (523), Expect(2) = 8e-56
Identities = 100/123 (81%), Positives = 108/123 (87%)
Frame = -1
Query: 518 LTHMAEDKGKFRNTGPVHPLTRQPVADRKQFGGIKFGEME*DCLIAHGAAANLHERLFTL 339
L HMAEDK KFRNTGPVHPLTRQPVADRK+FGGIKFGEME DCLIAHGAAANLHERLFTL
Sbjct: 173 LIHMAEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTL 232
Query: 338 RDSSQMHICRKCKKMANVIQRPVSGGKKIRGPYCRFCESVQDVVRVNVPYGAKLLARSSS 159
DSSQMHIC KCK MANVIQR GG KIRGP+CRFCESV+D+V+V+VPYGAKLL +
Sbjct: 233 SDSSQMHICGKCKNMANVIQRSAPGG-KIRGPFCRFCESVEDIVKVDVPYGAKLLCQELF 291
Query: 158 AWG 150
+ G
Sbjct: 292 SMG 294
Score = 37.4 bits (85), Expect(2) = 8e-56
Identities = 15/18 (83%), Positives = 17/18 (94%)
Frame = -3
Query: 174 CQELFSMGISLSFETELC 121
CQELFSMGISL F+TE+C
Sbjct: 287 CQELFSMGISLKFDTEIC 304
>ref|XP_006442883.1| hypothetical protein CICLE_v10018562mg [Citrus clementina]
gi|568850178|ref|XP_006478802.1| PREDICTED: DNA-directed
RNA polymerases IV and V subunit 2-like [Citrus sinensis]
gi|557545145|gb|ESR56123.1| hypothetical protein
CICLE_v10018562mg [Citrus clementina]
Length = 1198
Score = 205 bits (521), Expect(2) = 5e-55
Identities = 96/123 (78%), Positives = 106/123 (86%)
Frame = -1
Query: 518 LTHMAEDKGKFRNTGPVHPLTRQPVADRKQFGGIKFGEME*DCLIAHGAAANLHERLFTL 339
L HM+EDK KFRNTGPVHPLTRQPVADRK+FGGIKFGEME DCLIAHGAAANLHERLFTL
Sbjct: 1066 LIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTL 1125
Query: 338 RDSSQMHICRKCKKMANVIQRPVSGGKKIRGPYCRFCESVQDVVRVNVPYGAKLLARSSS 159
DS QMHICRKCK +ANVIQR V GG+K+RGPYCR C+S D+V+ NVPYGAKLL +
Sbjct: 1126 SDSYQMHICRKCKNVANVIQRVVGGGRKVRGPYCRICDSGDDIVKANVPYGAKLLCQELF 1185
Query: 158 AWG 150
+ G
Sbjct: 1186 SMG 1188
Score = 35.4 bits (80), Expect(2) = 5e-55
Identities = 14/18 (77%), Positives = 16/18 (88%)
Frame = -3
Query: 174 CQELFSMGISLSFETELC 121
CQELFSMGI+L F+TE C
Sbjct: 1181 CQELFSMGITLKFDTEFC 1198
>ref|XP_002324332.2| DNA-directed RNA polymerase family protein [Populus trichocarpa]
gi|550317882|gb|EEF02897.2| DNA-directed RNA polymerase
family protein [Populus trichocarpa]
Length = 1181
Score = 207 bits (527), Expect(2) = 1e-54
Identities = 98/123 (79%), Positives = 109/123 (88%)
Frame = -1
Query: 518 LTHMAEDKGKFRNTGPVHPLTRQPVADRKQFGGIKFGEME*DCLIAHGAAANLHERLFTL 339
L HMAEDK KFRNTGPVHPLTRQPVADRK+FGGIKFGEME DCLIAHGA+ANLHERLFTL
Sbjct: 1049 LVHMAEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGASANLHERLFTL 1108
Query: 338 RDSSQMHICRKCKKMANVIQRPVSGGKKIRGPYCRFCESVQDVVRVNVPYGAKLLARSSS 159
DSS+MHIC+KCK +ANVIQR V GG+KIRGPYCR CESV D+V+V+VPYGAKLL +
Sbjct: 1109 SDSSEMHICQKCKNVANVIQRGVPGGRKIRGPYCRVCESVDDLVKVSVPYGAKLLCQELF 1168
Query: 158 AWG 150
+ G
Sbjct: 1169 SMG 1171
Score = 31.6 bits (70), Expect(2) = 1e-54
Identities = 13/17 (76%), Positives = 15/17 (88%)
Frame = -3
Query: 174 CQELFSMGISLSFETEL 124
CQELFSMGISL F+T +
Sbjct: 1164 CQELFSMGISLKFDTRV 1180
>ref|XP_007225442.1| hypothetical protein PRUPE_ppa000410mg [Prunus persica]
gi|462422378|gb|EMJ26641.1| hypothetical protein
PRUPE_ppa000410mg [Prunus persica]
Length = 1200
Score = 201 bits (510), Expect(2) = 7e-54
Identities = 94/123 (76%), Positives = 107/123 (86%)
Frame = -1
Query: 518 LTHMAEDKGKFRNTGPVHPLTRQPVADRKQFGGIKFGEME*DCLIAHGAAANLHERLFTL 339
L HM+EDK KFRNTGPVHPLTRQPVADRK+FGGIKFGEME DCLIAHGA+ANLHERLFTL
Sbjct: 1068 LIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGASANLHERLFTL 1127
Query: 338 RDSSQMHICRKCKKMANVIQRPVSGGKKIRGPYCRFCESVQDVVRVNVPYGAKLLARSSS 159
DSSQMH+C+KCK +A VI R V+GG+KIRGP+CR C+S D+VRVNVPYGAKLL +
Sbjct: 1128 SDSSQMHVCQKCKNVAYVILRTVAGGRKIRGPHCRICDSADDLVRVNVPYGAKLLCQELF 1187
Query: 158 AWG 150
+ G
Sbjct: 1188 SMG 1190
Score = 35.8 bits (81), Expect(2) = 7e-54
Identities = 15/18 (83%), Positives = 15/18 (83%)
Frame = -3
Query: 174 CQELFSMGISLSFETELC 121
CQELFSMGISL FET C
Sbjct: 1183 CQELFSMGISLKFETRFC 1200
>ref|XP_004288915.1| PREDICTED: DNA-directed RNA polymerase D subunit 2a-like [Fragaria
vesca subsp. vesca]
Length = 1201
Score = 199 bits (505), Expect(2) = 9e-54
Identities = 92/123 (74%), Positives = 107/123 (86%)
Frame = -1
Query: 518 LTHMAEDKGKFRNTGPVHPLTRQPVADRKQFGGIKFGEME*DCLIAHGAAANLHERLFTL 339
L HM+EDK KFRNTGPVHPLTRQPVADRK+FGGIKFGEME DCLIAHGA+ANLHERLFTL
Sbjct: 1069 LIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGASANLHERLFTL 1128
Query: 338 RDSSQMHICRKCKKMANVIQRPVSGGKKIRGPYCRFCESVQDVVRVNVPYGAKLLARSSS 159
DSS M++C+KC+ ANVI+R ++GG+KIRGPYCR C+S D+VRVNVPYGAKLL +
Sbjct: 1129 SDSSLMNVCQKCQNAANVIERKLTGGRKIRGPYCRVCDSADDIVRVNVPYGAKLLCQELF 1188
Query: 158 AWG 150
+ G
Sbjct: 1189 SMG 1191
Score = 37.4 bits (85), Expect(2) = 9e-54
Identities = 16/18 (88%), Positives = 16/18 (88%)
Frame = -3
Query: 174 CQELFSMGISLSFETELC 121
CQELFSMGISL FET LC
Sbjct: 1184 CQELFSMGISLKFETRLC 1201
>ref|XP_006300099.1| hypothetical protein CARUB_v10016327mg [Capsella rubella]
gi|482568808|gb|EOA32997.1| hypothetical protein
CARUB_v10016327mg [Capsella rubella]
Length = 1161
Score = 200 bits (509), Expect(2) = 9e-54
Identities = 97/123 (78%), Positives = 104/123 (84%)
Frame = -1
Query: 518 LTHMAEDKGKFRNTGPVHPLTRQPVADRKQFGGIKFGEME*DCLIAHGAAANLHERLFTL 339
L HM+EDK KFRNTGPVHPLTRQPVADRK+FGGIKFGEME DCLIAHGA+ANLHERLFTL
Sbjct: 1029 LVHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGASANLHERLFTL 1088
Query: 338 RDSSQMHICRKCKKMANVIQRPVSGGKKIRGPYCRFCESVQDVVRVNVPYGAKLLARSSS 159
DSSQMHICRKCK ANVI+R S G+KIRGPYCR CES VVRV VPYGAKLL +
Sbjct: 1089 SDSSQMHICRKCKTYANVIERTPSSGRKIRGPYCRVCESPDHVVRVYVPYGAKLLCQELF 1148
Query: 158 AWG 150
+ G
Sbjct: 1149 SMG 1151
Score = 35.8 bits (81), Expect(2) = 9e-54
Identities = 14/18 (77%), Positives = 18/18 (100%)
Frame = -3
Query: 174 CQELFSMGISLSFETELC 121
CQELFSMGI+L+F+T+LC
Sbjct: 1144 CQELFSMGITLNFDTKLC 1161
>dbj|BAD43874.1| putative DNA-directed RNA polymerase subunit [Arabidopsis thaliana]
Length = 639
Score = 197 bits (502), Expect(2) = 2e-53
Identities = 96/123 (78%), Positives = 103/123 (83%)
Frame = -1
Query: 518 LTHMAEDKGKFRNTGPVHPLTRQPVADRKQFGGIKFGEME*DCLIAHGAAANLHERLFTL 339
L HM+EDK KFRNTGPVHPLTRQPVADRK+FGGIKFGEME DCLIAHGA+ANLHERLFTL
Sbjct: 507 LVHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGASANLHERLFTL 566
Query: 338 RDSSQMHICRKCKKMANVIQRPVSGGKKIRGPYCRFCESVQDVVRVNVPYGAKLLARSSS 159
DSSQMHICRKCK ANVI+R S G+KIRGPYCR C S VVRV VPYGAKLL +
Sbjct: 567 SDSSQMHICRKCKTYANVIERTPSSGRKIRGPYCRVCVSSDHVVRVYVPYGAKLLCQELF 626
Query: 158 AWG 150
+ G
Sbjct: 627 SMG 629
Score = 37.4 bits (85), Expect(2) = 2e-53
Identities = 15/18 (83%), Positives = 18/18 (100%)
Frame = -3
Query: 174 CQELFSMGISLSFETELC 121
CQELFSMGI+L+F+TELC
Sbjct: 622 CQELFSMGITLNFDTELC 639
>ref|NP_189020.2| nuclear RNA polymerase D2A [Arabidopsis thaliana]
gi|334185578|ref|NP_001189957.1| nuclear RNA polymerase
D2A [Arabidopsis thaliana]
gi|75335101|sp|Q9LK40.1|NRPD2_ARATH RecName:
Full=DNA-directed RNA polymerases IV and V subunit 2;
AltName: Full=DNA-directed RNA polymerase D subunit 2a;
Short=AtNRPD2a; Short=Nuclear RNA polymerase D 2a;
AltName: Full=Nuclear RNA polymerase E 2; AltName:
Full=Protein DEFECTIVE IN MERISTEM SILENCING 2; AltName:
Full=Protein DEFECTIVE IN RNA-DIRECTED DNA METHYLATION 2;
AltName: Full=RNA polymerase IV subunit 2a; Short=POL IV
2a gi|9293951|dbj|BAB01854.1| DNA-directed RNA
polymerase, subunit B [Arabidopsis thaliana]
gi|57791156|gb|AAW56422.1| polymerase IV second largest
subunit [Arabidopsis thaliana] gi|62183738|gb|AAX73261.1|
RNA polymerase IV second-largest subunit [Arabidopsis
thaliana] gi|332643291|gb|AEE76812.1| nuclear RNA
polymerase D2A [Arabidopsis thaliana]
gi|332643292|gb|AEE76813.1| nuclear RNA polymerase D2A
[Arabidopsis thaliana]
Length = 1172
Score = 197 bits (502), Expect(2) = 6e-53
Identities = 96/123 (78%), Positives = 103/123 (83%)
Frame = -1
Query: 518 LTHMAEDKGKFRNTGPVHPLTRQPVADRKQFGGIKFGEME*DCLIAHGAAANLHERLFTL 339
L HM+EDK KFRNTGPVHPLTRQPVADRK+FGGIKFGEME DCLIAHGA+ANLHERLFTL
Sbjct: 1040 LVHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGASANLHERLFTL 1099
Query: 338 RDSSQMHICRKCKKMANVIQRPVSGGKKIRGPYCRFCESVQDVVRVNVPYGAKLLARSSS 159
DSSQMHICRKCK ANVI+R S G+KIRGPYCR C S VVRV VPYGAKLL +
Sbjct: 1100 SDSSQMHICRKCKTYANVIERTPSSGRKIRGPYCRVCVSSDHVVRVYVPYGAKLLCQELF 1159
Query: 158 AWG 150
+ G
Sbjct: 1160 SMG 1162
Score = 35.8 bits (81), Expect(2) = 6e-53
Identities = 14/18 (77%), Positives = 18/18 (100%)
Frame = -3
Query: 174 CQELFSMGISLSFETELC 121
CQELFSMGI+L+F+T+LC
Sbjct: 1155 CQELFSMGITLNFDTKLC 1172
>ref|XP_002883108.1| NRPD2a [Arabidopsis lyrata subsp. lyrata] gi|297328948|gb|EFH59367.1|
NRPD2a [Arabidopsis lyrata subsp. lyrata]
Length = 1169
Score = 197 bits (500), Expect(2) = 1e-52
Identities = 95/123 (77%), Positives = 103/123 (83%)
Frame = -1
Query: 518 LTHMAEDKGKFRNTGPVHPLTRQPVADRKQFGGIKFGEME*DCLIAHGAAANLHERLFTL 339
L HM+EDK KFRNTGPVHPLTRQPVAD+K+FGGIKFGEME DCLIAHGA+ANLHERLFTL
Sbjct: 1037 LVHMSEDKVKFRNTGPVHPLTRQPVADKKRFGGIKFGEMERDCLIAHGASANLHERLFTL 1096
Query: 338 RDSSQMHICRKCKKMANVIQRPVSGGKKIRGPYCRFCESVQDVVRVNVPYGAKLLARSSS 159
DSSQMHICRKCK ANVI+R S G+KIRGPYCR C S VVRV VPYGAKLL +
Sbjct: 1097 SDSSQMHICRKCKTYANVIERTPSSGRKIRGPYCRVCASSDHVVRVYVPYGAKLLCQELF 1156
Query: 158 AWG 150
+ G
Sbjct: 1157 SMG 1159
Score = 35.8 bits (81), Expect(2) = 1e-52
Identities = 14/18 (77%), Positives = 18/18 (100%)
Frame = -3
Query: 174 CQELFSMGISLSFETELC 121
CQELFSMGI+L+F+T+LC
Sbjct: 1152 CQELFSMGITLNFDTKLC 1169