BLASTX nr result
ID: Mentha28_contig00011118
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Mentha28_contig00011118
(2698 letters)
Database: ./nr
38,876,450 sequences; 13,856,398,315 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|EYU28900.1| hypothetical protein MIMGU_mgv1a000798mg [Mimulus... 1332 0.0
ref|XP_004239009.1| PREDICTED: DNA-directed RNA polymerase 1, mi... 1287 0.0
ref|XP_006348633.1| PREDICTED: DNA-directed RNA polymerase 1, mi... 1286 0.0
sp|Q8L6J5.2|RPO1B_TOBAC RecName: Full=DNA-directed RNA polymeras... 1281 0.0
emb|CAC82574.2| phage-type RNA polymerase [Nicotiana tabacum] 1279 0.0
emb|CAC95019.1| mitochondrial RNA polymerase [Nicotiana sylvestris] 1278 0.0
sp|Q93Y94.1|RPOT1_NICSY RecName: Full=DNA-directed RNA polymeras... 1277 0.0
dbj|BAB69063.1| T7 bacteriophage-type single subunit RNA polymer... 1273 0.0
ref|XP_002267464.1| PREDICTED: DNA-directed RNA polymerase 1, mi... 1271 0.0
emb|CBI27412.3| unnamed protein product [Vitis vinifera] 1269 0.0
ref|XP_007225383.1| hypothetical protein PRUPE_ppa000780mg [Prun... 1251 0.0
ref|XP_002315996.2| DNA-directed RNA polymerase family protein [... 1240 0.0
ref|NP_001062659.1| Os09g0246200 [Oryza sativa Japonica Group] g... 1240 0.0
gb|EEE69251.1| hypothetical protein OsJ_28503 [Oryza sativa Japo... 1240 0.0
ref|XP_006660444.1| PREDICTED: DNA-directed RNA polymerase 1B, m... 1240 0.0
ref|XP_002461035.1| hypothetical protein SORBIDRAFT_02g039520 [S... 1228 0.0
ref|XP_002311418.2| hypothetical protein POPTR_0008s11200g [Popu... 1228 0.0
ref|XP_007045721.1| DNA-directed RNA polymerase isoform 1 [Theob... 1228 0.0
ref|XP_002514571.1| DNA-directed RNA polymerase 2, chloroplast/m... 1226 0.0
ref|XP_003577161.1| PREDICTED: DNA-directed RNA polymerase 2, ch... 1224 0.0
>gb|EYU28900.1| hypothetical protein MIMGU_mgv1a000798mg [Mimulus guttatus]
Length = 983
Score = 1332 bits (3447), Expect = 0.0
Identities = 644/809 (79%), Positives = 701/809 (86%)
Frame = +1
Query: 4 DMCEQKLAPNLPYVKSLFLGWFEPLRDAIAAEQELCKDSSRSTTHAPYFDQLPADMMAVI 183
DMCEQKLAPNLPY+KSLFLGWFEPLRDAIAAEQ+LCK+ +APYFDQLPA+MMAVI
Sbjct: 175 DMCEQKLAPNLPYIKSLFLGWFEPLRDAIAAEQDLCKEGKNRGAYAPYFDQLPAEMMAVI 234
Query: 184 TMHKLMALLMTGGCRNGVRVIQAAGHVGEAIEHEVRIHKFLETSKRKNALNRTCDEERDP 363
TMHKLM LLMTGG RV+QAA H+GEAIEHEVRIHKFL+ KRKNALNRT +E DP
Sbjct: 235 TMHKLMGLLMTGGGNGSARVVQAACHIGEAIEHEVRIHKFLDNCKRKNALNRTSEEGPDP 294
Query: 364 AAKEQERLTXXXXXXXXXXXXXXXRRIVSRQDDLKSWGQEAQLKVGCRLIQILMDTAYIQ 543
AKEQ+RL R IV QDDLK WGQ+AQ+KVGCRLIQIL TAYIQ
Sbjct: 295 EAKEQDRLRKKVKILMKKQKVQQVRNIVRHQDDLKPWGQDAQVKVGCRLIQILTQTAYIQ 354
Query: 544 PPLDQMEDAPPDIRPAFVHALKSVETGKTSKRYGVIECDPIVRKGLEKTAKHMVIPYMPM 723
PP+DQ +D PDIRPAFVH LK VET K S+RYGVIECDP+VRKG+EKTA+HMVIPYMPM
Sbjct: 355 PPVDQRDDGAPDIRPAFVHTLKCVETLKGSRRYGVIECDPLVRKGMEKTARHMVIPYMPM 414
Query: 724 LVPPLNWTGYERGAYLFLPSYIMRTHGARQQREAVKKAPREQLEPVFKALNTLGNTKWRV 903
LVPPLNWTGYERGAYLFLPSY+MRTHGA+QQREAVK+ P+++LEP+F+ALNTLGNTKWRV
Sbjct: 415 LVPPLNWTGYERGAYLFLPSYMMRTHGAKQQREAVKRTPKQELEPIFQALNTLGNTKWRV 474
Query: 904 NKRILSVIDRIWANGGQLADLVDRXXXXXXXXXXXXXXXXIKKWRWNVKAVKKENSERHS 1083
NKRILSV+DRIWANGG+LADLVDR IKKW+W VKAVKK NSERHS
Sbjct: 475 NKRILSVVDRIWANGGRLADLVDREDLPLPEEPDTEDEAEIKKWKWKVKAVKKVNSERHS 534
Query: 1084 QRCDTELKLVVARKMKDEEGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRPL 1263
QRCD ELKL VARK+K+EEGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRPL
Sbjct: 535 QRCDIELKLAVARKIKEEEGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRPL 594
Query: 1264 GKSGLHWMKIQLANVYGGGVDKLSYEGRVSFTENNLEDIFDSADRPLEGRRWWLGAEDPF 1443
GKSGL W+K+ LAN+YGGGVDK SY+GR+SFTEN++EDIFDSADRPLEG+RWWLGAEDPF
Sbjct: 595 GKSGLQWLKVHLANLYGGGVDKFSYDGRISFTENHMEDIFDSADRPLEGKRWWLGAEDPF 654
Query: 1444 QCLATCVSLAEALRSPNPETVISHMPVHQDGSCNGLQHYAALGRDKLGAAAVNLTAGDKP 1623
QCLATC+SL EALRSP PE+ +S++PVHQDGSCNGLQHYAALGRDKLGAAAVNL AGDKP
Sbjct: 655 QCLATCMSLTEALRSPYPESTVSYIPVHQDGSCNGLQHYAALGRDKLGAAAVNLVAGDKP 714
Query: 1624 ADVYSGIAARVLEIMKTDAAGDPAIDPNAKHARLLIDQVDRKLVKQTVMTSVYGVTYIGA 1803
ADVYSGIAARVL+IMK DAA DPA DPN ARLLI+QVDRKLVKQTVMTSVYGVTYIGA
Sbjct: 715 ADVYSGIAARVLDIMKRDAAKDPADDPNVMRARLLINQVDRKLVKQTVMTSVYGVTYIGA 774
Query: 1804 RDQIKRRLKERHAIDDDSEMFACACYAAKTTLTALGEMFEAARSIMGWLGDCAKIIAMEN 1983
RDQIKRRLKER +++DD+E+FACACYAAKTTLTALGEMFEAARSIM WLGDCAKIIA EN
Sbjct: 775 RDQIKRRLKERASMEDDTELFACACYAAKTTLTALGEMFEAARSIMSWLGDCAKIIATEN 834
Query: 1984 QPVRWTTPLGLPVVQPYRKLGKQVIKTSLQNLTLQRETDKVMTKRQRSAFPPNFVHSLDS 2163
PVRWTTPLGLPVVQPYRKLG+ +IKTSLQ LTLQRETDKVM KRQR+AFPPNFVHSLD
Sbjct: 835 HPVRWTTPLGLPVVQPYRKLGRHMIKTSLQVLTLQRETDKVMAKRQRTAFPPNFVHSLDG 894
Query: 2164 SHMMMTATACSKAGLYFAGVHDSYWTHACDVDTMNQILREKFVELYEQPIXXXXXXXXXX 2343
SHMMMTA ACS+AGL FAGVHDSYWTHACDVD MN+ILREKFVELYE PI
Sbjct: 895 SHMMMTAIACSEAGLSFAGVHDSYWTHACDVDKMNEILREKFVELYEAPILENLLDGFQQ 954
Query: 2344 XXPKLKFPSLPERGDFDLKEVLGSTYFFN 2430
PKLKFP LPERGDFDL+EVL STYFFN
Sbjct: 955 SFPKLKFPPLPERGDFDLREVLDSTYFFN 983
>ref|XP_004239009.1| PREDICTED: DNA-directed RNA polymerase 1, mitochondrial-like [Solanum
lycopersicum]
Length = 993
Score = 1287 bits (3330), Expect = 0.0
Identities = 624/810 (77%), Positives = 693/810 (85%)
Frame = +1
Query: 1 VDMCEQKLAPNLPYVKSLFLGWFEPLRDAIAAEQELCKDSSRSTTHAPYFDQLPADMMAV 180
+DMCEQKLAPNLPY+KSLFLGWFEPL+DAIAAEQ+LC + +AP+FDQLPA+MMAV
Sbjct: 185 MDMCEQKLAPNLPYIKSLFLGWFEPLKDAIAAEQKLCDEGKNRGAYAPFFDQLPAEMMAV 244
Query: 181 ITMHKLMALLMTGGCRNGVRVIQAAGHVGEAIEHEVRIHKFLETSKRKNALNRTCDEERD 360
ITMHKLM LLMTGG RV+QAA H+GEAIEHE RIH+FLE +K KNAL+ + +E
Sbjct: 245 ITMHKLMGLLMTGGGSGSARVVQAASHIGEAIEHEARIHRFLEKTK-KNALDGSLEETAG 303
Query: 361 PAAKEQERLTXXXXXXXXXXXXXXXRRIVSRQDDLKSWGQEAQLKVGCRLIQILMDTAYI 540
KE+ERL R+IV +QDD K WGQ+ +KVGCRLIQIL++TAYI
Sbjct: 304 DIMKERERLRKKVKILMKKQKLQQVRKIVKQQDDEKPWGQDNLVKVGCRLIQILIETAYI 363
Query: 541 QPPLDQMEDAPPDIRPAFVHALKSVETGKTSKRYGVIECDPIVRKGLEKTAKHMVIPYMP 720
QPP DQ+ED PPDIRPAF+H LK+V+T K S+RYGVI+CDP+VRKGL+KTA+HMVIPYMP
Sbjct: 364 QPPNDQLEDCPPDIRPAFMHTLKTVDTVKGSRRYGVIQCDPLVRKGLDKTARHMVIPYMP 423
Query: 721 MLVPPLNWTGYERGAYLFLPSYIMRTHGARQQREAVKKAPREQLEPVFKALNTLGNTKWR 900
MLVPP NW+GY+RGAYLFLPSYIMRTHGA+QQREAVK+ P++QLEPVF+AL+TLGNTKWR
Sbjct: 424 MLVPPQNWSGYDRGAYLFLPSYIMRTHGAKQQREAVKRVPKKQLEPVFQALDTLGNTKWR 483
Query: 901 VNKRILSVIDRIWANGGQLADLVDRXXXXXXXXXXXXXXXXIKKWRWNVKAVKKENSERH 1080
VNKR+L ++DRIWA+GG+LADLVDR IKKW+W VKA KKEN ERH
Sbjct: 484 VNKRVLGILDRIWASGGRLADLVDREDVPLPEEPDTENEEEIKKWKWKVKAAKKENCERH 543
Query: 1081 SQRCDTELKLVVARKMKDEEGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRP 1260
SQRCD ELKL VARKMKDEEGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGILEF+EGRP
Sbjct: 544 SQRCDIELKLAVARKMKDEEGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGILEFSEGRP 603
Query: 1261 LGKSGLHWMKIQLANVYGGGVDKLSYEGRVSFTENNLEDIFDSADRPLEGRRWWLGAEDP 1440
LGKSGL W+KI LANVYGGGVDKLS EGR +F+EN++EDIFDSADRPLEGRRWWLGAEDP
Sbjct: 604 LGKSGLRWLKIHLANVYGGGVDKLSCEGRAAFSENHVEDIFDSADRPLEGRRWWLGAEDP 663
Query: 1441 FQCLATCVSLAEALRSPNPETVISHMPVHQDGSCNGLQHYAALGRDKLGAAAVNLTAGDK 1620
FQCLATC+S++EALRSP+PET ISHMP+HQDGSCNGLQHYAALGRDKLGAAAVNL AGDK
Sbjct: 664 FQCLATCISISEALRSPSPETSISHMPIHQDGSCNGLQHYAALGRDKLGAAAVNLVAGDK 723
Query: 1621 PADVYSGIAARVLEIMKTDAAGDPAIDPNAKHARLLIDQVDRKLVKQTVMTSVYGVTYIG 1800
PADVYSGIAARVL+IMK DA DPA DPN ARLLI+QVDRKLVKQTVMTSVYGVTYIG
Sbjct: 724 PADVYSGIAARVLDIMKRDADKDPATDPNVMRARLLINQVDRKLVKQTVMTSVYGVTYIG 783
Query: 1801 ARDQIKRRLKERHAIDDDSEMFACACYAAKTTLTALGEMFEAARSIMGWLGDCAKIIAME 1980
ARDQIKRRLKER AI+DD+E+FA ACYAAKTTLTALGEMFEAARSIM WLGDCAKIIAME
Sbjct: 784 ARDQIKRRLKERGAIEDDNELFAAACYAAKTTLTALGEMFEAARSIMSWLGDCAKIIAME 843
Query: 1981 NQPVRWTTPLGLPVVQPYRKLGKQVIKTSLQNLTLQRETDKVMTKRQRSAFPPNFVHSLD 2160
NQPVRWTTPLGLPVVQPYRKLG+ +IKTSLQ LTLQRETDKVM KRQR+AFPPNFVHSLD
Sbjct: 844 NQPVRWTTPLGLPVVQPYRKLGRHLIKTSLQILTLQRETDKVMVKRQRTAFPPNFVHSLD 903
Query: 2161 SSHMMMTATACSKAGLYFAGVHDSYWTHACDVDTMNQILREKFVELYEQPIXXXXXXXXX 2340
SHMMMTA AC +AGL FAGVHDSYWTHA DVD MN+ILREKFVELY+ PI
Sbjct: 904 GSHMMMTAIACKEAGLSFAGVHDSYWTHASDVDQMNKILREKFVELYDAPILENLLESFQ 963
Query: 2341 XXXPKLKFPSLPERGDFDLKEVLGSTYFFN 2430
P L+FP LPERGDFDL+EVL S YFFN
Sbjct: 964 QSFPDLQFPPLPERGDFDLREVLESPYFFN 993
>ref|XP_006348633.1| PREDICTED: DNA-directed RNA polymerase 1, mitochondrial-like [Solanum
tuberosum]
Length = 993
Score = 1286 bits (3329), Expect = 0.0
Identities = 622/810 (76%), Positives = 693/810 (85%)
Frame = +1
Query: 1 VDMCEQKLAPNLPYVKSLFLGWFEPLRDAIAAEQELCKDSSRSTTHAPYFDQLPADMMAV 180
+DMCEQKLAPNLPY+KSLFLGWFEPLRDAIAAEQ+LC + +AP+FDQLPA+MMAV
Sbjct: 185 MDMCEQKLAPNLPYIKSLFLGWFEPLRDAIAAEQKLCDEGKNRGAYAPFFDQLPAEMMAV 244
Query: 181 ITMHKLMALLMTGGCRNGVRVIQAAGHVGEAIEHEVRIHKFLETSKRKNALNRTCDEERD 360
ITMHKLM LLMTGG RV+QAA H+GEAIEHE RIH+FLE +K KNAL+ + +E
Sbjct: 245 ITMHKLMGLLMTGGGSGSARVVQAASHIGEAIEHEARIHRFLEKTK-KNALDGSLEETAG 303
Query: 361 PAAKEQERLTXXXXXXXXXXXXXXXRRIVSRQDDLKSWGQEAQLKVGCRLIQILMDTAYI 540
KE+ERL R+IV +QDD K WGQ+ +KVGC+LIQIL++TAYI
Sbjct: 304 DIMKERERLRKKVKILMKKQKLQQVRKIVKQQDDEKPWGQDNLVKVGCKLIQILIETAYI 363
Query: 541 QPPLDQMEDAPPDIRPAFVHALKSVETGKTSKRYGVIECDPIVRKGLEKTAKHMVIPYMP 720
QPP DQ++D PPDIRPAF+H LK+VET K S+RYGVI+CDP+VRKGL+KTA+HMVIPYMP
Sbjct: 364 QPPNDQLDDCPPDIRPAFMHTLKTVETVKGSRRYGVIQCDPLVRKGLDKTARHMVIPYMP 423
Query: 721 MLVPPLNWTGYERGAYLFLPSYIMRTHGARQQREAVKKAPREQLEPVFKALNTLGNTKWR 900
MLVPP NW+GY+RGAYLFLPSYIMRTHGA+QQREAVK+ P++QLEPVF+AL+TLGNTKWR
Sbjct: 424 MLVPPQNWSGYDRGAYLFLPSYIMRTHGAKQQREAVKRVPKKQLEPVFQALDTLGNTKWR 483
Query: 901 VNKRILSVIDRIWANGGQLADLVDRXXXXXXXXXXXXXXXXIKKWRWNVKAVKKENSERH 1080
VNKR+L ++DRIWA+GG+LADLVDR IKKW+W VKA KKEN ERH
Sbjct: 484 VNKRVLGILDRIWASGGRLADLVDREDVPLPEEPDTEDEEEIKKWKWKVKAAKKENCERH 543
Query: 1081 SQRCDTELKLVVARKMKDEEGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRP 1260
SQRCD ELKL VARKMKDEEGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGILEF+EGRP
Sbjct: 544 SQRCDIELKLAVARKMKDEEGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGILEFSEGRP 603
Query: 1261 LGKSGLHWMKIQLANVYGGGVDKLSYEGRVSFTENNLEDIFDSADRPLEGRRWWLGAEDP 1440
LGKSGL W+KI LANVYGGGVDKLSYEGR +F+EN++EDIFDSADRPLEGRRWWLGAEDP
Sbjct: 604 LGKSGLRWLKIHLANVYGGGVDKLSYEGRAAFSENHVEDIFDSADRPLEGRRWWLGAEDP 663
Query: 1441 FQCLATCVSLAEALRSPNPETVISHMPVHQDGSCNGLQHYAALGRDKLGAAAVNLTAGDK 1620
FQCLATC++++EALRSP+PET ISHMP+HQDGSCNGLQHYAALGRDKLGAAAVNL AGDK
Sbjct: 664 FQCLATCINISEALRSPSPETSISHMPIHQDGSCNGLQHYAALGRDKLGAAAVNLVAGDK 723
Query: 1621 PADVYSGIAARVLEIMKTDAAGDPAIDPNAKHARLLIDQVDRKLVKQTVMTSVYGVTYIG 1800
PADVYSGIAARVL+IMK DA DPA DPN ARLLI+QVDRKLVKQTVMTSVYGVTYIG
Sbjct: 724 PADVYSGIAARVLDIMKRDADKDPATDPNVMRARLLINQVDRKLVKQTVMTSVYGVTYIG 783
Query: 1801 ARDQIKRRLKERHAIDDDSEMFACACYAAKTTLTALGEMFEAARSIMGWLGDCAKIIAME 1980
ARDQIKRRLKER AI+DD+E+F+ ACYAAKTTLTALGEMFEAARSIM WLGDCAKIIAME
Sbjct: 784 ARDQIKRRLKERGAIEDDNELFSAACYAAKTTLTALGEMFEAARSIMSWLGDCAKIIAME 843
Query: 1981 NQPVRWTTPLGLPVVQPYRKLGKQVIKTSLQNLTLQRETDKVMTKRQRSAFPPNFVHSLD 2160
NQPVRWTTPLGLPVVQPYRKLG+ +IKTSLQ LTLQRETDKVM KRQR+AFPPNFVHSLD
Sbjct: 844 NQPVRWTTPLGLPVVQPYRKLGRHLIKTSLQILTLQRETDKVMVKRQRTAFPPNFVHSLD 903
Query: 2161 SSHMMMTATACSKAGLYFAGVHDSYWTHACDVDTMNQILREKFVELYEQPIXXXXXXXXX 2340
SHMMMTA C +AGL FAGVHDSYWTHA DVD MN+ILREKFVELY+ PI
Sbjct: 904 GSHMMMTAITCKEAGLSFAGVHDSYWTHASDVDQMNKILREKFVELYDAPILENLLESFQ 963
Query: 2341 XXXPKLKFPSLPERGDFDLKEVLGSTYFFN 2430
P L+FP LPERGDFDL+EVL S YFFN
Sbjct: 964 QSFPDLQFPPLPERGDFDLREVLESPYFFN 993
>sp|Q8L6J5.2|RPO1B_TOBAC RecName: Full=DNA-directed RNA polymerase 1B, mitochondrial; AltName:
Full=NictaRpoT1-tom; AltName: Full=T7 bacteriophage-type
single subunit RNA polymerase 1B; Flags: Precursor
Length = 1002
Score = 1281 bits (3314), Expect = 0.0
Identities = 616/810 (76%), Positives = 691/810 (85%)
Frame = +1
Query: 1 VDMCEQKLAPNLPYVKSLFLGWFEPLRDAIAAEQELCKDSSRSTTHAPYFDQLPADMMAV 180
+DMCEQKLAPNLPY+KSLFLGWFEPLRDAIAAEQ+LC + +AP+FDQLPA+MMAV
Sbjct: 193 MDMCEQKLAPNLPYMKSLFLGWFEPLRDAIAAEQKLCDEGKNRGAYAPFFDQLPAEMMAV 252
Query: 181 ITMHKLMALLMTGGCRNGVRVIQAAGHVGEAIEHEVRIHKFLETSKRKNALNRTCDEERD 360
ITMHKLM LLMTGG RV+QAA ++GEAIEHE RIH+FLE +K+ NAL+ +E
Sbjct: 253 ITMHKLMGLLMTGGGTGSARVVQAASYIGEAIEHEARIHRFLEKTKKSNALSGDLEETPG 312
Query: 361 PAAKEQERLTXXXXXXXXXXXXXXXRRIVSRQDDLKSWGQEAQLKVGCRLIQILMDTAYI 540
KE+ERL R+IV +QDD K WGQ+ +KVGCRLIQILM+TAYI
Sbjct: 313 DMMKERERLRKKVKILMKKQKLRQVRKIVKQQDDEKPWGQDNLVKVGCRLIQILMETAYI 372
Query: 541 QPPLDQMEDAPPDIRPAFVHALKSVETGKTSKRYGVIECDPIVRKGLEKTAKHMVIPYMP 720
QPP DQ++D PPDIRPAFVH LK+VET K S+RYGVI+CDP+VRKGL+KTA+HMVIPYMP
Sbjct: 373 QPPNDQLDDGPPDIRPAFVHTLKTVETMKGSRRYGVIQCDPLVRKGLDKTARHMVIPYMP 432
Query: 721 MLVPPLNWTGYERGAYLFLPSYIMRTHGARQQREAVKKAPREQLEPVFKALNTLGNTKWR 900
MLVPP +W GY++G YLFLPSYIMRTHGA+QQREAVK+ P++QLEPVF+AL+TLGNTKWR
Sbjct: 433 MLVPPQSWLGYDKGGYLFLPSYIMRTHGAKQQREAVKRVPKKQLEPVFQALDTLGNTKWR 492
Query: 901 VNKRILSVIDRIWANGGQLADLVDRXXXXXXXXXXXXXXXXIKKWRWNVKAVKKENSERH 1080
VN+++L ++DRIWA+GG+LADLVDR I+KW+W VK VKKEN ERH
Sbjct: 493 VNRKVLGIVDRIWASGGRLADLVDREDVPLPEAPDTEDEAEIRKWKWKVKGVKKENCERH 552
Query: 1081 SQRCDTELKLVVARKMKDEEGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRP 1260
SQRCD ELKL VARKMKDE+GFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRP
Sbjct: 553 SQRCDIELKLAVARKMKDEDGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRP 612
Query: 1261 LGKSGLHWMKIQLANVYGGGVDKLSYEGRVSFTENNLEDIFDSADRPLEGRRWWLGAEDP 1440
LG SGL W+KI LANVYGGGVDKLSYEGRV+F+EN+LEDIFDSA+RPLEG+RWWLGAEDP
Sbjct: 613 LGTSGLRWLKIHLANVYGGGVDKLSYEGRVAFSENHLEDIFDSAERPLEGKRWWLGAEDP 672
Query: 1441 FQCLATCVSLAEALRSPNPETVISHMPVHQDGSCNGLQHYAALGRDKLGAAAVNLTAGDK 1620
FQCLATC+++AEALRSP+PET IS+MP+HQDGSCNGLQHYAALGRDKLGAAAVNL AGDK
Sbjct: 673 FQCLATCINIAEALRSPSPETAISYMPIHQDGSCNGLQHYAALGRDKLGAAAVNLVAGDK 732
Query: 1621 PADVYSGIAARVLEIMKTDAAGDPAIDPNAKHARLLIDQVDRKLVKQTVMTSVYGVTYIG 1800
PADVYSGIAARVL+IMK DAA DPA DPN ARLLI+QVDRKLVKQTVMTSVYGVTYIG
Sbjct: 733 PADVYSGIAARVLDIMKRDAAKDPANDPNVMRARLLINQVDRKLVKQTVMTSVYGVTYIG 792
Query: 1801 ARDQIKRRLKERHAIDDDSEMFACACYAAKTTLTALGEMFEAARSIMGWLGDCAKIIAME 1980
ARDQIK+RLKER I+DD+E+FA ACYAAKTTLTALGEMFEAARSIM WLGDCAKIIAME
Sbjct: 793 ARDQIKKRLKERGVIEDDNELFAAACYAAKTTLTALGEMFEAARSIMSWLGDCAKIIAME 852
Query: 1981 NQPVRWTTPLGLPVVQPYRKLGKQVIKTSLQNLTLQRETDKVMTKRQRSAFPPNFVHSLD 2160
N PVRWTTPLGLPVVQPYRKLG+ +IKTSLQ LTLQRETDKVM KRQR+AFPPNFVHSLD
Sbjct: 853 NHPVRWTTPLGLPVVQPYRKLGRHLIKTSLQILTLQRETDKVMVKRQRTAFPPNFVHSLD 912
Query: 2161 SSHMMMTATACSKAGLYFAGVHDSYWTHACDVDTMNQILREKFVELYEQPIXXXXXXXXX 2340
SHMMMTA AC ++GL FAGVHDSYWTHACDVD MN+ILREKFVELY+ PI
Sbjct: 913 GSHMMMTAIACKESGLSFAGVHDSYWTHACDVDQMNKILREKFVELYDAPILENLLESFQ 972
Query: 2341 XXXPKLKFPSLPERGDFDLKEVLGSTYFFN 2430
P L+FP LPERGDFDL+EVL S YFFN
Sbjct: 973 QSFPDLQFPPLPERGDFDLREVLESPYFFN 1002
>emb|CAC82574.2| phage-type RNA polymerase [Nicotiana tabacum]
Length = 1002
Score = 1279 bits (3309), Expect = 0.0
Identities = 615/810 (75%), Positives = 691/810 (85%)
Frame = +1
Query: 1 VDMCEQKLAPNLPYVKSLFLGWFEPLRDAIAAEQELCKDSSRSTTHAPYFDQLPADMMAV 180
+DMCEQKLAPNLPY+KSLFLGWFEPLRDAIAAEQ+LC + +AP+FDQLPA+MMAV
Sbjct: 193 MDMCEQKLAPNLPYMKSLFLGWFEPLRDAIAAEQKLCDEGKNRGAYAPFFDQLPAEMMAV 252
Query: 181 ITMHKLMALLMTGGCRNGVRVIQAAGHVGEAIEHEVRIHKFLETSKRKNALNRTCDEERD 360
ITMHKLM LLMTGG RV+QAA ++GEAIEHE RIH+FLE +K+ NAL+ +E
Sbjct: 253 ITMHKLMGLLMTGGGTGSARVVQAASYIGEAIEHEARIHRFLEKTKKSNALSGDLEETPG 312
Query: 361 PAAKEQERLTXXXXXXXXXXXXXXXRRIVSRQDDLKSWGQEAQLKVGCRLIQILMDTAYI 540
KE+ERL R+IV +QDD K WGQ+ +KVGCRLIQILM+TAYI
Sbjct: 313 DMMKERERLRKKVKILMKKQKLRQVRKIVKQQDDEKPWGQDNLVKVGCRLIQILMETAYI 372
Query: 541 QPPLDQMEDAPPDIRPAFVHALKSVETGKTSKRYGVIECDPIVRKGLEKTAKHMVIPYMP 720
QPP DQ++D PPDIRPAFVH LK+VET K S+RYGVI+CDP+VRKGL+KTA+HMVIPYMP
Sbjct: 373 QPPNDQLDDGPPDIRPAFVHTLKTVETMKGSRRYGVIQCDPLVRKGLDKTARHMVIPYMP 432
Query: 721 MLVPPLNWTGYERGAYLFLPSYIMRTHGARQQREAVKKAPREQLEPVFKALNTLGNTKWR 900
MLVPP +W GY++G YLFLPSYIMRTHGA+QQREAVK+ P++QLEPVF+AL+TLGNTKWR
Sbjct: 433 MLVPPQSWLGYDKGGYLFLPSYIMRTHGAKQQREAVKRVPKKQLEPVFQALDTLGNTKWR 492
Query: 901 VNKRILSVIDRIWANGGQLADLVDRXXXXXXXXXXXXXXXXIKKWRWNVKAVKKENSERH 1080
VN+++L +++RIWA+GG+LADLVDR I+KW+W VK VKKEN ERH
Sbjct: 493 VNRKVLGIVNRIWASGGRLADLVDREDVPLPEAPDTEDEAEIRKWKWKVKGVKKENCERH 552
Query: 1081 SQRCDTELKLVVARKMKDEEGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRP 1260
SQRCD ELKL VARKMKDE+GFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRP
Sbjct: 553 SQRCDIELKLAVARKMKDEDGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRP 612
Query: 1261 LGKSGLHWMKIQLANVYGGGVDKLSYEGRVSFTENNLEDIFDSADRPLEGRRWWLGAEDP 1440
LG SGL W+KI LANVYGGGVDKLSYEGRV+F+EN+LEDIFDSA+RPLEG+RWWLGAEDP
Sbjct: 613 LGTSGLRWLKIHLANVYGGGVDKLSYEGRVAFSENHLEDIFDSAERPLEGKRWWLGAEDP 672
Query: 1441 FQCLATCVSLAEALRSPNPETVISHMPVHQDGSCNGLQHYAALGRDKLGAAAVNLTAGDK 1620
FQCLATC+++AEALRSP+PET IS+MP+HQDGSCNGLQHYAALGRDKLGAAAVNL AGDK
Sbjct: 673 FQCLATCINIAEALRSPSPETAISYMPIHQDGSCNGLQHYAALGRDKLGAAAVNLVAGDK 732
Query: 1621 PADVYSGIAARVLEIMKTDAAGDPAIDPNAKHARLLIDQVDRKLVKQTVMTSVYGVTYIG 1800
PADVYSGIAARVL+IMK DAA DPA DPN ARLLI+QVDRKLVKQTVMTSVYGVTYIG
Sbjct: 733 PADVYSGIAARVLDIMKRDAAKDPANDPNVMRARLLINQVDRKLVKQTVMTSVYGVTYIG 792
Query: 1801 ARDQIKRRLKERHAIDDDSEMFACACYAAKTTLTALGEMFEAARSIMGWLGDCAKIIAME 1980
ARDQIK+RLKER I+DD+E+FA ACYAAKTTLTALGEMFEAARSIM WLGDCAKIIAME
Sbjct: 793 ARDQIKKRLKERGVIEDDNELFAAACYAAKTTLTALGEMFEAARSIMSWLGDCAKIIAME 852
Query: 1981 NQPVRWTTPLGLPVVQPYRKLGKQVIKTSLQNLTLQRETDKVMTKRQRSAFPPNFVHSLD 2160
N PVRWTTPLGLPVVQPYRKLG+ +IKTSLQ LTLQRETDKVM KRQR+AFPPNFVHSLD
Sbjct: 853 NHPVRWTTPLGLPVVQPYRKLGRHLIKTSLQILTLQRETDKVMVKRQRTAFPPNFVHSLD 912
Query: 2161 SSHMMMTATACSKAGLYFAGVHDSYWTHACDVDTMNQILREKFVELYEQPIXXXXXXXXX 2340
SHMMMTA AC ++GL FAGVHDSYWTHACDVD MN+ILREKFVELY+ PI
Sbjct: 913 GSHMMMTAIACKESGLSFAGVHDSYWTHACDVDQMNKILREKFVELYDAPILENLLESFQ 972
Query: 2341 XXXPKLKFPSLPERGDFDLKEVLGSTYFFN 2430
P L+FP LPERGDFDL+EVL S YFFN
Sbjct: 973 QSFPDLQFPPLPERGDFDLREVLESPYFFN 1002
>emb|CAC95019.1| mitochondrial RNA polymerase [Nicotiana sylvestris]
Length = 1002
Score = 1278 bits (3308), Expect = 0.0
Identities = 615/810 (75%), Positives = 691/810 (85%)
Frame = +1
Query: 1 VDMCEQKLAPNLPYVKSLFLGWFEPLRDAIAAEQELCKDSSRSTTHAPYFDQLPADMMAV 180
+DMCEQKLAPNLPY+KSLFLGWFEPLRDAIAAEQ+LC + +AP+FDQLPA+MMAV
Sbjct: 193 MDMCEQKLAPNLPYMKSLFLGWFEPLRDAIAAEQKLCDEGKNRGAYAPFFDQLPAEMMAV 252
Query: 181 ITMHKLMALLMTGGCRNGVRVIQAAGHVGEAIEHEVRIHKFLETSKRKNALNRTCDEERD 360
ITMHKLM LLMTGG RV+QAA H+GEAIEHE RIH+FLE +K+ NAL+ ++
Sbjct: 253 ITMHKLMGLLMTGGGTGSARVVQAASHIGEAIEHEARIHRFLEKTKKSNALSGDLEDTPG 312
Query: 361 PAAKEQERLTXXXXXXXXXXXXXXXRRIVSRQDDLKSWGQEAQLKVGCRLIQILMDTAYI 540
KE+ERL R+IV +QDD K WGQ+ +KVGCRLIQILM+TAYI
Sbjct: 313 DIMKERERLRKKVKILMKKQKLQQVRKIVKQQDDEKPWGQDNLVKVGCRLIQILMETAYI 372
Query: 541 QPPLDQMEDAPPDIRPAFVHALKSVETGKTSKRYGVIECDPIVRKGLEKTAKHMVIPYMP 720
QPP DQ++D PPDIRPAFVH LK+VET K S+RYGVI+CDP+VRKGL+KTA+HMVIPYMP
Sbjct: 373 QPPNDQLDDCPPDIRPAFVHTLKTVETMKGSRRYGVIQCDPLVRKGLDKTARHMVIPYMP 432
Query: 721 MLVPPLNWTGYERGAYLFLPSYIMRTHGARQQREAVKKAPREQLEPVFKALNTLGNTKWR 900
MLVPP +W GY++GAYLFLPSYIMRTHGA+QQREAVK+ P++QLEPVF+AL+TLGNTKWR
Sbjct: 433 MLVPPQSWLGYDKGAYLFLPSYIMRTHGAKQQREAVKRVPKKQLEPVFQALDTLGNTKWR 492
Query: 901 VNKRILSVIDRIWANGGQLADLVDRXXXXXXXXXXXXXXXXIKKWRWNVKAVKKENSERH 1080
+N+++L ++DRIWA+GG+LADLVDR I+KW+W VK VKKEN ERH
Sbjct: 493 LNRKVLGIVDRIWASGGRLADLVDREDVPLPEEPDAEDEAQIRKWKWKVKGVKKENCERH 552
Query: 1081 SQRCDTELKLVVARKMKDEEGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRP 1260
SQRCD ELKL VARKMKDE+GFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRP
Sbjct: 553 SQRCDIELKLAVARKMKDEDGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRP 612
Query: 1261 LGKSGLHWMKIQLANVYGGGVDKLSYEGRVSFTENNLEDIFDSADRPLEGRRWWLGAEDP 1440
LGKSGL W+KI LANVYGGGVDKLSYEGRV+F+EN++EDIFDSA+RPLEG+RWWLGAEDP
Sbjct: 613 LGKSGLRWLKIHLANVYGGGVDKLSYEGRVAFSENHVEDIFDSAERPLEGKRWWLGAEDP 672
Query: 1441 FQCLATCVSLAEALRSPNPETVISHMPVHQDGSCNGLQHYAALGRDKLGAAAVNLTAGDK 1620
FQCLATC+++AEALRSP+PET IS+MP+HQDGSCNGLQHYAALGRD LGAAAVNL AGDK
Sbjct: 673 FQCLATCINIAEALRSPSPETAISYMPIHQDGSCNGLQHYAALGRDTLGAAAVNLVAGDK 732
Query: 1621 PADVYSGIAARVLEIMKTDAAGDPAIDPNAKHARLLIDQVDRKLVKQTVMTSVYGVTYIG 1800
PADVYSGIAARVL+IMK DAA DPA DPN ARLLI+QVDRKLVKQTVMTSVYGVTYIG
Sbjct: 733 PADVYSGIAARVLDIMKRDAAKDPANDPNVMRARLLINQVDRKLVKQTVMTSVYGVTYIG 792
Query: 1801 ARDQIKRRLKERHAIDDDSEMFACACYAAKTTLTALGEMFEAARSIMGWLGDCAKIIAME 1980
ARDQIKRRLKER I+DD+E+FA ACYAAKTTLTALGEMFEAARSIM WLGDCAKIIAME
Sbjct: 793 ARDQIKRRLKERGVIEDDNELFAAACYAAKTTLTALGEMFEAARSIMSWLGDCAKIIAME 852
Query: 1981 NQPVRWTTPLGLPVVQPYRKLGKQVIKTSLQNLTLQRETDKVMTKRQRSAFPPNFVHSLD 2160
N PVRWTTPLGLPVVQPYRKLG+ +IKTSLQ LTLQRETDKVM KRQR+AFPPNFVHSLD
Sbjct: 853 NHPVRWTTPLGLPVVQPYRKLGRHLIKTSLQILTLQRETDKVMVKRQRTAFPPNFVHSLD 912
Query: 2161 SSHMMMTATACSKAGLYFAGVHDSYWTHACDVDTMNQILREKFVELYEQPIXXXXXXXXX 2340
SHMMMTA AC ++GL FAGVHDSYWTHA DVD MN+ILREKFVELY+ PI
Sbjct: 913 GSHMMMTAIACKESGLSFAGVHDSYWTHASDVDQMNKILREKFVELYDAPILENLLESFQ 972
Query: 2341 XXXPKLKFPSLPERGDFDLKEVLGSTYFFN 2430
P L+FP LPERGDFDL+EVL S YFFN
Sbjct: 973 QSFPDLQFPPLPERGDFDLREVLESPYFFN 1002
>sp|Q93Y94.1|RPOT1_NICSY RecName: Full=DNA-directed RNA polymerase 1, mitochondrial; AltName:
Full=NsRpoT-A; AltName: Full=T7 bacteriophage-type single
subunit RNA polymerase 1; Flags: Precursor
gi|15824083|dbj|BAB69431.1| T7 bacteriophage-type single
subunit RNA polymerase [Nicotiana sylvestris]
Length = 1002
Score = 1277 bits (3305), Expect = 0.0
Identities = 614/810 (75%), Positives = 691/810 (85%)
Frame = +1
Query: 1 VDMCEQKLAPNLPYVKSLFLGWFEPLRDAIAAEQELCKDSSRSTTHAPYFDQLPADMMAV 180
+DMCEQKLAPNLPY+KSLFLGWFEPLRDAIAAEQ+LC + +AP+FDQLPA+MMAV
Sbjct: 193 MDMCEQKLAPNLPYMKSLFLGWFEPLRDAIAAEQKLCDEGKNRGAYAPFFDQLPAEMMAV 252
Query: 181 ITMHKLMALLMTGGCRNGVRVIQAAGHVGEAIEHEVRIHKFLETSKRKNALNRTCDEERD 360
ITMHKLM LLMTGG RV+QAA H+GEAIEHE RIH+FLE +K+ NAL+ ++
Sbjct: 253 ITMHKLMGLLMTGGGTGSARVVQAASHIGEAIEHEARIHRFLEKTKKSNALSGDLEDTPG 312
Query: 361 PAAKEQERLTXXXXXXXXXXXXXXXRRIVSRQDDLKSWGQEAQLKVGCRLIQILMDTAYI 540
KE+ER+ R+IV +QDD K WGQ+ +KVGCRLIQILM+TAYI
Sbjct: 313 DIMKERERVRKKVKILMKKQKLQQVRKIVKQQDDEKPWGQDNLVKVGCRLIQILMETAYI 372
Query: 541 QPPLDQMEDAPPDIRPAFVHALKSVETGKTSKRYGVIECDPIVRKGLEKTAKHMVIPYMP 720
QPP DQ++D PPDIRPAFVH LK+VET K S+RYGVI+CDP+VRKGL+KTA+HMVIPYMP
Sbjct: 373 QPPNDQLDDCPPDIRPAFVHTLKTVETMKGSRRYGVIQCDPLVRKGLDKTARHMVIPYMP 432
Query: 721 MLVPPLNWTGYERGAYLFLPSYIMRTHGARQQREAVKKAPREQLEPVFKALNTLGNTKWR 900
MLVPP +W GY++GAYLFLPSYIMRTHGA+QQREAVK+ P++QLEPVF+AL+TLGNTKWR
Sbjct: 433 MLVPPQSWLGYDKGAYLFLPSYIMRTHGAKQQREAVKRVPKKQLEPVFQALDTLGNTKWR 492
Query: 901 VNKRILSVIDRIWANGGQLADLVDRXXXXXXXXXXXXXXXXIKKWRWNVKAVKKENSERH 1080
+N+++L ++DRIWA+GG+LADLVDR I+KW+W VK VKKEN ERH
Sbjct: 493 LNRKVLGIVDRIWASGGRLADLVDREDVPLPEEPDAEDEAQIRKWKWKVKGVKKENCERH 552
Query: 1081 SQRCDTELKLVVARKMKDEEGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRP 1260
SQRCD ELKL VARKMKDE+GFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRP
Sbjct: 553 SQRCDIELKLAVARKMKDEDGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRP 612
Query: 1261 LGKSGLHWMKIQLANVYGGGVDKLSYEGRVSFTENNLEDIFDSADRPLEGRRWWLGAEDP 1440
LGKSGL W+KI LANVYGGGVDKLSYEGRV+F+EN++EDIFDSA+RPLEG+RWWLGAEDP
Sbjct: 613 LGKSGLRWLKIHLANVYGGGVDKLSYEGRVAFSENHVEDIFDSAERPLEGKRWWLGAEDP 672
Query: 1441 FQCLATCVSLAEALRSPNPETVISHMPVHQDGSCNGLQHYAALGRDKLGAAAVNLTAGDK 1620
FQCLATC+++AEALRSP+PET IS+MP+HQDGSCNGLQHYAALGRD LGAAAVNL AGDK
Sbjct: 673 FQCLATCINIAEALRSPSPETAISYMPIHQDGSCNGLQHYAALGRDTLGAAAVNLVAGDK 732
Query: 1621 PADVYSGIAARVLEIMKTDAAGDPAIDPNAKHARLLIDQVDRKLVKQTVMTSVYGVTYIG 1800
PADVYSGIAARVL+IMK DAA DPA DPN ARLLI+QVDRKLVKQTVMTSVYGVTYIG
Sbjct: 733 PADVYSGIAARVLDIMKRDAAKDPANDPNVMRARLLINQVDRKLVKQTVMTSVYGVTYIG 792
Query: 1801 ARDQIKRRLKERHAIDDDSEMFACACYAAKTTLTALGEMFEAARSIMGWLGDCAKIIAME 1980
ARDQIKRRLKER I+DD+E+FA ACYAAKTTLTALGEMFEAARSIM WLGDCAKIIAME
Sbjct: 793 ARDQIKRRLKERGVIEDDNELFAAACYAAKTTLTALGEMFEAARSIMSWLGDCAKIIAME 852
Query: 1981 NQPVRWTTPLGLPVVQPYRKLGKQVIKTSLQNLTLQRETDKVMTKRQRSAFPPNFVHSLD 2160
N PVRWTTPLGLPVVQPYRKLG+ +IKTSLQ LTLQRETDKVM KRQR+AFPPNFVHSLD
Sbjct: 853 NHPVRWTTPLGLPVVQPYRKLGRHLIKTSLQILTLQRETDKVMVKRQRTAFPPNFVHSLD 912
Query: 2161 SSHMMMTATACSKAGLYFAGVHDSYWTHACDVDTMNQILREKFVELYEQPIXXXXXXXXX 2340
SHMMMTA AC ++GL FAGVHDSYWTHA DVD MN+ILREKFVELY+ PI
Sbjct: 913 GSHMMMTAIACKESGLSFAGVHDSYWTHASDVDQMNKILREKFVELYDAPILENLLESFQ 972
Query: 2341 XXXPKLKFPSLPERGDFDLKEVLGSTYFFN 2430
P L+FP LPERGDFDL+EVL S YFFN
Sbjct: 973 QSFPDLQFPPLPERGDFDLREVLESPYFFN 1002
>dbj|BAB69063.1| T7 bacteriophage-type single subunit RNA polymerase [Nicotiana
sylvestris]
Length = 1002
Score = 1273 bits (3294), Expect = 0.0
Identities = 613/810 (75%), Positives = 689/810 (85%)
Frame = +1
Query: 1 VDMCEQKLAPNLPYVKSLFLGWFEPLRDAIAAEQELCKDSSRSTTHAPYFDQLPADMMAV 180
+DMCEQKLAPNLPY+KSLFLGWFEPLRDAIAAEQ+LC + AP+FDQLPA+MMAV
Sbjct: 193 MDMCEQKLAPNLPYMKSLFLGWFEPLRDAIAAEQKLCDEGKNRGACAPFFDQLPAEMMAV 252
Query: 181 ITMHKLMALLMTGGCRNGVRVIQAAGHVGEAIEHEVRIHKFLETSKRKNALNRTCDEERD 360
ITMHKLM LMTGG RV+QAA H+GEAIEHE RIH+FLE +K+ NAL+ ++
Sbjct: 253 ITMHKLMGWLMTGGGTGSARVVQAASHIGEAIEHEARIHRFLEKTKKSNALSGDLEDTPG 312
Query: 361 PAAKEQERLTXXXXXXXXXXXXXXXRRIVSRQDDLKSWGQEAQLKVGCRLIQILMDTAYI 540
KE+ER+ R+IV +QDD K WGQ+ +KVGCRLIQILM+TAYI
Sbjct: 313 DIMKERERVRKKVKILMKKQKLQQVRKIVKQQDDEKPWGQDNLVKVGCRLIQILMETAYI 372
Query: 541 QPPLDQMEDAPPDIRPAFVHALKSVETGKTSKRYGVIECDPIVRKGLEKTAKHMVIPYMP 720
QPP DQ++D PPDIRPAFVH LK+VET K S+RYGVI+CDP+VRKGL+KTA+HMVIPYMP
Sbjct: 373 QPPNDQLDDCPPDIRPAFVHTLKTVETMKGSRRYGVIQCDPLVRKGLDKTARHMVIPYMP 432
Query: 721 MLVPPLNWTGYERGAYLFLPSYIMRTHGARQQREAVKKAPREQLEPVFKALNTLGNTKWR 900
MLVPP +W GY++GAYLFLPSYIMRTHGA+QQREAVK+ P++QLEPVF+AL+TLGNTKWR
Sbjct: 433 MLVPPQSWLGYDKGAYLFLPSYIMRTHGAKQQREAVKRVPKKQLEPVFQALDTLGNTKWR 492
Query: 901 VNKRILSVIDRIWANGGQLADLVDRXXXXXXXXXXXXXXXXIKKWRWNVKAVKKENSERH 1080
+N+++L ++DRIWA+GG+LADLVDR I+KW+W VK VKKEN ERH
Sbjct: 493 LNRKVLGIVDRIWASGGRLADLVDREDVPLPEEPDAEDEAQIRKWKWKVKGVKKENCERH 552
Query: 1081 SQRCDTELKLVVARKMKDEEGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRP 1260
SQRCD ELKL VARKMKDE+GFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRP
Sbjct: 553 SQRCDIELKLAVARKMKDEDGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRP 612
Query: 1261 LGKSGLHWMKIQLANVYGGGVDKLSYEGRVSFTENNLEDIFDSADRPLEGRRWWLGAEDP 1440
LGKSGL W+KI LANVYGGGVDKLSYEGRV+F+EN++EDIFDSA+RPLEG+RWWLGAEDP
Sbjct: 613 LGKSGLRWLKIHLANVYGGGVDKLSYEGRVAFSENHVEDIFDSAERPLEGKRWWLGAEDP 672
Query: 1441 FQCLATCVSLAEALRSPNPETVISHMPVHQDGSCNGLQHYAALGRDKLGAAAVNLTAGDK 1620
FQCLATC+++AEALRSP+PET IS+MP+HQDGSCNGLQHYAALGRD LGAAAVNL AGDK
Sbjct: 673 FQCLATCINIAEALRSPSPETAISYMPIHQDGSCNGLQHYAALGRDTLGAAAVNLVAGDK 732
Query: 1621 PADVYSGIAARVLEIMKTDAAGDPAIDPNAKHARLLIDQVDRKLVKQTVMTSVYGVTYIG 1800
PADVYSGIAARVL+IMK DAA DPA DPN ARLLI+QVDRKLVKQTVMTSVYGVTYIG
Sbjct: 733 PADVYSGIAARVLDIMKRDAAKDPANDPNVMRARLLINQVDRKLVKQTVMTSVYGVTYIG 792
Query: 1801 ARDQIKRRLKERHAIDDDSEMFACACYAAKTTLTALGEMFEAARSIMGWLGDCAKIIAME 1980
ARDQIKRRLKER I+DD+E+FA ACYAAKTTLTALGEMFEAARSIM WLGDCAKIIAME
Sbjct: 793 ARDQIKRRLKERGVIEDDNELFAAACYAAKTTLTALGEMFEAARSIMSWLGDCAKIIAME 852
Query: 1981 NQPVRWTTPLGLPVVQPYRKLGKQVIKTSLQNLTLQRETDKVMTKRQRSAFPPNFVHSLD 2160
N PVRWTTPLGLPVVQPYRKLG+ +IKTSLQ LTLQRETDKVM KRQR+AFPPNFVHSLD
Sbjct: 853 NHPVRWTTPLGLPVVQPYRKLGRHLIKTSLQILTLQRETDKVMVKRQRTAFPPNFVHSLD 912
Query: 2161 SSHMMMTATACSKAGLYFAGVHDSYWTHACDVDTMNQILREKFVELYEQPIXXXXXXXXX 2340
SHMMMTA AC ++GL FAGVHDSYWTHA DVD MN+ILREKFVELY+ PI
Sbjct: 913 GSHMMMTAIACKESGLSFAGVHDSYWTHASDVDQMNKILREKFVELYDAPILENLLESFQ 972
Query: 2341 XXXPKLKFPSLPERGDFDLKEVLGSTYFFN 2430
P L+FP LPERGDFDL+EVL S YFFN
Sbjct: 973 QSFPDLQFPPLPERGDFDLREVLESPYFFN 1002
>ref|XP_002267464.1| PREDICTED: DNA-directed RNA polymerase 1, mitochondrial [Vitis
vinifera]
Length = 978
Score = 1271 bits (3290), Expect = 0.0
Identities = 617/811 (76%), Positives = 682/811 (84%), Gaps = 2/811 (0%)
Frame = +1
Query: 4 DMCEQKLAPNLPYVKSLFLGWFEPLRDAIAAEQELCKDSSRSTTHAPYFDQLPADMMAVI 183
DMCEQKLAPNLPY+KSLFLGWFEPLRD IAAEQ+LCK +APYFD LPADMMAVI
Sbjct: 168 DMCEQKLAPNLPYIKSLFLGWFEPLRDVIAAEQDLCKQGKNRAAYAPYFDHLPADMMAVI 227
Query: 184 TMHKLMALLMTGGCRNGVRVIQAAGHVGEAIEHEVRIHKFLETSKRKNALNRTCDEERDP 363
TMHKLM LLMTG RV+QAA H+GEAIEHEVRI +F+E +K+K+A + D +P
Sbjct: 228 TMHKLMGLLMTGEGNGSARVVQAACHIGEAIEHEVRIQRFMEKTKKKSASSNNPDGGSNP 287
Query: 364 AAKEQERLTXXXXXXXXXXXXXXXRRIVSRQDDLKSWGQEAQLKVGCRLIQILMDTAYIQ 543
KEQE+L R+IV RQDD K WGQ+A +KVG RLI++L++TAYIQ
Sbjct: 288 VTKEQEKLRKKVSMLMKKQKLQQVRQIVKRQDDSKPWGQDANVKVGSRLIELLIETAYIQ 347
Query: 544 PPLDQMEDAPPDIRPAFVHALKSV--ETGKTSKRYGVIECDPIVRKGLEKTAKHMVIPYM 717
PP DQ+ D PPDIRPAFVH LK+V ET K ++RYGVIECDP+VRKGLEKTA+HMVIPYM
Sbjct: 348 PPADQLGDGPPDIRPAFVHTLKTVIKETQKGTRRYGVIECDPLVRKGLEKTARHMVIPYM 407
Query: 718 PMLVPPLNWTGYERGAYLFLPSYIMRTHGARQQREAVKKAPREQLEPVFKALNTLGNTKW 897
PMLVPPLNWTGY++GAYLFLPSY+MR HGARQQREA+K+APR+ LEP F+ALNTLGNTKW
Sbjct: 408 PMLVPPLNWTGYDKGAYLFLPSYVMRIHGARQQREAIKRAPRKALEPAFEALNTLGNTKW 467
Query: 898 RVNKRILSVIDRIWANGGQLADLVDRXXXXXXXXXXXXXXXXIKKWRWNVKAVKKENSER 1077
R+NKR+L VIDRIWA+GG+LADLVDR I+KW+W V++VKKENSER
Sbjct: 468 RINKRVLGVIDRIWASGGRLADLVDREDVPLPEEPDTEDEAEIRKWKWKVRSVKKENSER 527
Query: 1078 HSQRCDTELKLVVARKMKDEEGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGILEFAEGR 1257
HSQRCD ELKL VARKMKDE+GF+YPHNLDFRGRAYPMHPYLNHLGSDLCRGILEFAEGR
Sbjct: 528 HSQRCDIELKLAVARKMKDEDGFFYPHNLDFRGRAYPMHPYLNHLGSDLCRGILEFAEGR 587
Query: 1258 PLGKSGLHWMKIQLANVYGGGVDKLSYEGRVSFTENNLEDIFDSADRPLEGRRWWLGAED 1437
PLGKSGL W+KI LANVY GGVDKLSYEGRV+FTEN+LEDIFDSADRPLEGRRWWL AED
Sbjct: 588 PLGKSGLRWLKIHLANVYAGGVDKLSYEGRVAFTENHLEDIFDSADRPLEGRRWWLSAED 647
Query: 1438 PFQCLATCVSLAEALRSPNPETVISHMPVHQDGSCNGLQHYAALGRDKLGAAAVNLTAGD 1617
PFQCLATC++L+EALRS +PET ISHMPVHQDGSCNGLQHYAALGRDKLGAAAVNL AG+
Sbjct: 648 PFQCLATCINLSEALRSSSPETTISHMPVHQDGSCNGLQHYAALGRDKLGAAAVNLVAGE 707
Query: 1618 KPADVYSGIAARVLEIMKTDAAGDPAIDPNAKHARLLIDQVDRKLVKQTVMTSVYGVTYI 1797
KPADVYSGIAARVL+IM+ DA DPA +PNA ARLLI QVDRKLVKQTVMTSVYGVTYI
Sbjct: 708 KPADVYSGIAARVLDIMQRDAQKDPATEPNALRARLLISQVDRKLVKQTVMTSVYGVTYI 767
Query: 1798 GARDQIKRRLKERHAIDDDSEMFACACYAAKTTLTALGEMFEAARSIMGWLGDCAKIIAM 1977
GARDQIKRRLKER AI D+ E+F+ +CYAAKTTLTALGEMFEAARSIM WLGDCAK+IA
Sbjct: 768 GARDQIKRRLKERCAIADEGEVFSASCYAAKTTLTALGEMFEAARSIMSWLGDCAKVIAS 827
Query: 1978 ENQPVRWTTPLGLPVVQPYRKLGKQVIKTSLQNLTLQRETDKVMTKRQRSAFPPNFVHSL 2157
EN PVRW TPLGLPVVQPYRKLG+ +IKTSLQ L+LQRETDKVM KRQR+AFPPNFVHSL
Sbjct: 828 ENHPVRWNTPLGLPVVQPYRKLGRHLIKTSLQVLSLQRETDKVMVKRQRTAFPPNFVHSL 887
Query: 2158 DSSHMMMTATACSKAGLYFAGVHDSYWTHACDVDTMNQILREKFVELYEQPIXXXXXXXX 2337
D SHMMMTA AC KAGL FAGVHDSYWTHACDVD MN+ILREKFVELY PI
Sbjct: 888 DGSHMMMTAVACQKAGLNFAGVHDSYWTHACDVDEMNRILREKFVELYGMPILENLLEGF 947
Query: 2338 XXXXPKLKFPSLPERGDFDLKEVLGSTYFFN 2430
P L FP LPERGDFDL+EVL S YFFN
Sbjct: 948 QKSFPTLNFPPLPERGDFDLREVLESPYFFN 978
>emb|CBI27412.3| unnamed protein product [Vitis vinifera]
Length = 810
Score = 1269 bits (3284), Expect = 0.0
Identities = 616/810 (76%), Positives = 681/810 (84%), Gaps = 2/810 (0%)
Frame = +1
Query: 7 MCEQKLAPNLPYVKSLFLGWFEPLRDAIAAEQELCKDSSRSTTHAPYFDQLPADMMAVIT 186
MCEQKLAPNLPY+KSLFLGWFEPLRD IAAEQ+LCK +APYFD LPADMMAVIT
Sbjct: 1 MCEQKLAPNLPYIKSLFLGWFEPLRDVIAAEQDLCKQGKNRAAYAPYFDHLPADMMAVIT 60
Query: 187 MHKLMALLMTGGCRNGVRVIQAAGHVGEAIEHEVRIHKFLETSKRKNALNRTCDEERDPA 366
MHKLM LLMTG RV+QAA H+GEAIEHEVRI +F+E +K+K+A + D +P
Sbjct: 61 MHKLMGLLMTGEGNGSARVVQAACHIGEAIEHEVRIQRFMEKTKKKSASSNNPDGGSNPV 120
Query: 367 AKEQERLTXXXXXXXXXXXXXXXRRIVSRQDDLKSWGQEAQLKVGCRLIQILMDTAYIQP 546
KEQE+L R+IV RQDD K WGQ+A +KVG RLI++L++TAYIQP
Sbjct: 121 TKEQEKLRKKVSMLMKKQKLQQVRQIVKRQDDSKPWGQDANVKVGSRLIELLIETAYIQP 180
Query: 547 PLDQMEDAPPDIRPAFVHALKSV--ETGKTSKRYGVIECDPIVRKGLEKTAKHMVIPYMP 720
P DQ+ D PPDIRPAFVH LK+V ET K ++RYGVIECDP+VRKGLEKTA+HMVIPYMP
Sbjct: 181 PADQLGDGPPDIRPAFVHTLKTVIKETQKGTRRYGVIECDPLVRKGLEKTARHMVIPYMP 240
Query: 721 MLVPPLNWTGYERGAYLFLPSYIMRTHGARQQREAVKKAPREQLEPVFKALNTLGNTKWR 900
MLVPPLNWTGY++GAYLFLPSY+MR HGARQQREA+K+APR+ LEP F+ALNTLGNTKWR
Sbjct: 241 MLVPPLNWTGYDKGAYLFLPSYVMRIHGARQQREAIKRAPRKALEPAFEALNTLGNTKWR 300
Query: 901 VNKRILSVIDRIWANGGQLADLVDRXXXXXXXXXXXXXXXXIKKWRWNVKAVKKENSERH 1080
+NKR+L VIDRIWA+GG+LADLVDR I+KW+W V++VKKENSERH
Sbjct: 301 INKRVLGVIDRIWASGGRLADLVDREDVPLPEEPDTEDEAEIRKWKWKVRSVKKENSERH 360
Query: 1081 SQRCDTELKLVVARKMKDEEGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRP 1260
SQRCD ELKL VARKMKDE+GF+YPHNLDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRP
Sbjct: 361 SQRCDIELKLAVARKMKDEDGFFYPHNLDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRP 420
Query: 1261 LGKSGLHWMKIQLANVYGGGVDKLSYEGRVSFTENNLEDIFDSADRPLEGRRWWLGAEDP 1440
LGKSGL W+KI LANVY GGVDKLSYEGRV+FTEN+LEDIFDSADRPLEGRRWWL AEDP
Sbjct: 421 LGKSGLRWLKIHLANVYAGGVDKLSYEGRVAFTENHLEDIFDSADRPLEGRRWWLSAEDP 480
Query: 1441 FQCLATCVSLAEALRSPNPETVISHMPVHQDGSCNGLQHYAALGRDKLGAAAVNLTAGDK 1620
FQCLATC++L+EALRS +PET ISHMPVHQDGSCNGLQHYAALGRDKLGAAAVNL AG+K
Sbjct: 481 FQCLATCINLSEALRSSSPETTISHMPVHQDGSCNGLQHYAALGRDKLGAAAVNLVAGEK 540
Query: 1621 PADVYSGIAARVLEIMKTDAAGDPAIDPNAKHARLLIDQVDRKLVKQTVMTSVYGVTYIG 1800
PADVYSGIAARVL+IM+ DA DPA +PNA ARLLI QVDRKLVKQTVMTSVYGVTYIG
Sbjct: 541 PADVYSGIAARVLDIMQRDAQKDPATEPNALRARLLISQVDRKLVKQTVMTSVYGVTYIG 600
Query: 1801 ARDQIKRRLKERHAIDDDSEMFACACYAAKTTLTALGEMFEAARSIMGWLGDCAKIIAME 1980
ARDQIKRRLKER AI D+ E+F+ +CYAAKTTLTALGEMFEAARSIM WLGDCAK+IA E
Sbjct: 601 ARDQIKRRLKERCAIADEGEVFSASCYAAKTTLTALGEMFEAARSIMSWLGDCAKVIASE 660
Query: 1981 NQPVRWTTPLGLPVVQPYRKLGKQVIKTSLQNLTLQRETDKVMTKRQRSAFPPNFVHSLD 2160
N PVRW TPLGLPVVQPYRKLG+ +IKTSLQ L+LQRETDKVM KRQR+AFPPNFVHSLD
Sbjct: 661 NHPVRWNTPLGLPVVQPYRKLGRHLIKTSLQVLSLQRETDKVMVKRQRTAFPPNFVHSLD 720
Query: 2161 SSHMMMTATACSKAGLYFAGVHDSYWTHACDVDTMNQILREKFVELYEQPIXXXXXXXXX 2340
SHMMMTA AC KAGL FAGVHDSYWTHACDVD MN+ILREKFVELY PI
Sbjct: 721 GSHMMMTAVACQKAGLNFAGVHDSYWTHACDVDEMNRILREKFVELYGMPILENLLEGFQ 780
Query: 2341 XXXPKLKFPSLPERGDFDLKEVLGSTYFFN 2430
P L FP LPERGDFDL+EVL S YFFN
Sbjct: 781 KSFPTLNFPPLPERGDFDLREVLESPYFFN 810
>ref|XP_007225383.1| hypothetical protein PRUPE_ppa000780mg [Prunus persica]
gi|462422319|gb|EMJ26582.1| hypothetical protein
PRUPE_ppa000780mg [Prunus persica]
Length = 1006
Score = 1251 bits (3238), Expect = 0.0
Identities = 609/827 (73%), Positives = 688/827 (83%), Gaps = 18/827 (2%)
Frame = +1
Query: 4 DMCEQKLAPNLPYVKSLFLGWFEPLRDAIAAEQELCKDSSRSTTHAPYFDQLPADMMAVI 183
DMCEQKLAPNLPY+KSLFLGWFEPLRDAIAA+Q+ CK + +HAPYFD LPAD MAVI
Sbjct: 180 DMCEQKLAPNLPYIKSLFLGWFEPLRDAIAADQDSCKQPNSRQSHAPYFDHLPADKMAVI 239
Query: 184 TMHKLMALLMTG-GCRNGVRVIQAAGHVGEAIEHEVRIHKFLE-TSKRKNALNRTCD--- 348
TMHKLM LLMT G VRV+QAA +GEAIEHEVRIH+FLE T K+KN +++ +
Sbjct: 240 TMHKLMGLLMTNNGGIGSVRVVQAACAIGEAIEHEVRIHRFLEKTKKKKNTIDKKAEADS 299
Query: 349 -----------EERDPAAKEQERLTXXXXXXXXXXXXXXXRRIVSRQDDLKSWGQEAQLK 495
+E++ KEQERL R IV Q+DLK WGQEA +K
Sbjct: 300 VPVTIEQEKLADEQEKLTKEQERLRKKVNKLIKRQKMQQVRGIVKEQEDLKPWGQEAHVK 359
Query: 496 VGCRLIQILMDTAYIQPPLDQMEDAPPDIRPAFVHALKSV--ETGKTSKRYGVIECDPIV 669
VGCRLIQ+LMDTAYIQPP+DQ+ D PPDIRPAFVH LK++ +T KTS+RYGVIECDPIV
Sbjct: 360 VGCRLIQLLMDTAYIQPPVDQIGDGPPDIRPAFVHNLKTITRDTQKTSRRYGVIECDPIV 419
Query: 670 RKGLEKTAKHMVIPYMPMLVPPLNWTGYERGAYLFLPSYIMRTHGARQQREAVKKAPREQ 849
RKG+EKTA+HMV+PYMPMLVPP+NWTGY+RGAYLFLPSY+MRTHGA+QQRE VK+ PR+Q
Sbjct: 420 RKGMEKTARHMVMPYMPMLVPPINWTGYDRGAYLFLPSYVMRTHGAKQQREVVKRTPRKQ 479
Query: 850 LEPVFKALNTLGNTKWRVNKRILSVIDRIWANGGQLADLVDRXXXXXXXXXXXXXXXXIK 1029
LEPVF+AL+TLG+TKWRVNKR+L VIDRIWA+GG+LADLVDR I+
Sbjct: 480 LEPVFEALDTLGSTKWRVNKRVLGVIDRIWASGGRLADLVDREDVPLPEEPDTEDEAEIR 539
Query: 1030 KWRWNVKAVKKENSERHSQRCDTELKLVVARKMKDEEGFYYPHNLDFRGRAYPMHPYLNH 1209
KW+W +KA KKENSERHSQRCD ELKL +RKMKDEEGFYYPHNLDFRGRAYPMHPYLNH
Sbjct: 540 KWKWKLKAAKKENSERHSQRCDIELKLAASRKMKDEEGFYYPHNLDFRGRAYPMHPYLNH 599
Query: 1210 LGSDLCRGILEFAEGRPLGKSGLHWMKIQLANVYGGGVDKLSYEGRVSFTENNLEDIFDS 1389
LGSD+CRGILEF+EGR LGKSGL W+KI LAN+Y GGVDKLS++ R +FTEN++++IFDS
Sbjct: 600 LGSDMCRGILEFSEGRHLGKSGLRWLKIHLANLYAGGVDKLSFDDRAAFTENHVDEIFDS 659
Query: 1390 ADRPLEGRRWWLGAEDPFQCLATCVSLAEALRSPNPETVISHMPVHQDGSCNGLQHYAAL 1569
ADRPLEGRRWWLGAEDPFQCLA C++L EALRSP+PET IS+MPVHQDGSCNGLQHYAAL
Sbjct: 660 ADRPLEGRRWWLGAEDPFQCLAACINLCEALRSPSPETTISYMPVHQDGSCNGLQHYAAL 719
Query: 1570 GRDKLGAAAVNLTAGDKPADVYSGIAARVLEIMKTDAAGDPAIDPNAKHARLLIDQVDRK 1749
GRDKLGAAAVNL GDKPADVYSGIAARVL+IM+ DA DPA +PNA HARLLI+QVDRK
Sbjct: 720 GRDKLGAAAVNLVGGDKPADVYSGIAARVLDIMRNDAEKDPATNPNALHARLLINQVDRK 779
Query: 1750 LVKQTVMTSVYGVTYIGARDQIKRRLKERHAIDDDSEMFACACYAAKTTLTALGEMFEAA 1929
LVKQTVMTSVYGVTY+GARDQIKRRLKER +I DD+ +FA ACYAA+TTLTALGEMFEAA
Sbjct: 780 LVKQTVMTSVYGVTYVGARDQIKRRLKERGSIADDTALFAAACYAARTTLTALGEMFEAA 839
Query: 1930 RSIMGWLGDCAKIIAMENQPVRWTTPLGLPVVQPYRKLGKQVIKTSLQNLTLQRETDKVM 2109
RSIM WLG+CAK+IA ENQPVRW TPLGLPVVQPYR+LG+ +IKTSLQ LTLQRETDKVM
Sbjct: 840 RSIMSWLGECAKVIASENQPVRWITPLGLPVVQPYRQLGRHLIKTSLQVLTLQRETDKVM 899
Query: 2110 TKRQRSAFPPNFVHSLDSSHMMMTATACSKAGLYFAGVHDSYWTHACDVDTMNQILREKF 2289
KRQR+AFPPNFVHSLD SHMMMTA AC KAGL FAGVHDSYWTHACD+D MN+ILREKF
Sbjct: 900 VKRQRTAFPPNFVHSLDGSHMMMTAVACKKAGLNFAGVHDSYWTHACDIDEMNRILREKF 959
Query: 2290 VELYEQPIXXXXXXXXXXXXPKLKFPSLPERGDFDLKEVLGSTYFFN 2430
VELYE PI P L FP LP+RGDFDL++VL S YFFN
Sbjct: 960 VELYEAPILENLLEGFQQSFPTLTFPPLPDRGDFDLRDVLESPYFFN 1006
>ref|XP_002315996.2| DNA-directed RNA polymerase family protein [Populus trichocarpa]
gi|550329816|gb|EEF02167.2| DNA-directed RNA polymerase
family protein [Populus trichocarpa]
Length = 862
Score = 1240 bits (3209), Expect = 0.0
Identities = 611/820 (74%), Positives = 679/820 (82%), Gaps = 11/820 (1%)
Frame = +1
Query: 4 DMCEQKLAPNLPYVKSLFLGWFEPLRDAIAAEQELCKDSSRSTTHAPYFDQLPADMMAVI 183
DMCEQKLAPNLPYVKSLFLGWFEPLRDAI AEQELCK +SR H YF+ LPADMMAVI
Sbjct: 44 DMCEQKLAPNLPYVKSLFLGWFEPLRDAILAEQELCKVNSR-VPHRAYFNDLPADMMAVI 102
Query: 184 TMHKLMALLMTG-GCRNGVRVIQAAGHVGEAIEHEVRIHKFLETSKRKNALNRTCDEERD 360
TMHKLM LLMTG G +RV+QAA VGEAIE+E +IHKFLE +K++ L E
Sbjct: 103 TMHKLMGLLMTGNGGTASIRVVQAASVVGEAIENEAKIHKFLEKTKKRKNLKEKISEGES 162
Query: 361 PAA--------KEQERLTXXXXXXXXXXXXXXXRRIVSRQDDLKSWGQEAQLKVGCRLIQ 516
AA KEQE+L RRIV DD WGQEA LKVG RLIQ
Sbjct: 163 VAAIYEGEKLTKEQEKLRKKVTTLMKKQKVHQVRRIVKGHDDSMPWGQEAHLKVGSRLIQ 222
Query: 517 ILMDTAYIQPPLDQMEDAPPDIRPAFVHALKSV--ETGKTSKRYGVIECDPIVRKGLEKT 690
++++TAYIQPP+DQ+ D PPDIRPAFVH LK++ +T K+S+RYGVIECDP+VRKGLEK+
Sbjct: 223 LMIETAYIQPPIDQIGDGPPDIRPAFVHTLKTITKDTQKSSRRYGVIECDPLVRKGLEKS 282
Query: 691 AKHMVIPYMPMLVPPLNWTGYERGAYLFLPSYIMRTHGARQQREAVKKAPREQLEPVFKA 870
A+HMVIPYMPMLVPPLNWTGY++GAY FLPSY+MR HGA+QQR A+K+A R QLEPVFKA
Sbjct: 283 ARHMVIPYMPMLVPPLNWTGYDQGAYFFLPSYVMRIHGAKQQRVAIKRASRNQLEPVFKA 342
Query: 871 LNTLGNTKWRVNKRILSVIDRIWANGGQLADLVDRXXXXXXXXXXXXXXXXIKKWRWNVK 1050
L+TLGNTKWRVNKRIL VIDRIWA+GG LA LVDR I+KWRW VK
Sbjct: 343 LDTLGNTKWRVNKRILGVIDRIWASGGHLAGLVDREDVPLPEEPQTEDEAEIRKWRWKVK 402
Query: 1051 AVKKENSERHSQRCDTELKLVVARKMKDEEGFYYPHNLDFRGRAYPMHPYLNHLGSDLCR 1230
+VKKENSERHSQRCD ELKL VARKMKDEEGFYYPHN+DFRGRAYPMHPYLNHLGSD+CR
Sbjct: 403 SVKKENSERHSQRCDVELKLAVARKMKDEEGFYYPHNVDFRGRAYPMHPYLNHLGSDVCR 462
Query: 1231 GILEFAEGRPLGKSGLHWMKIQLANVYGGGVDKLSYEGRVSFTENNLEDIFDSADRPLEG 1410
GILEFAEGRPLGKSGL W+KI LAN+Y GGVDKLSY+GR+SFTEN+L+DIFDSADRPLEG
Sbjct: 463 GILEFAEGRPLGKSGLRWLKIHLANLYAGGVDKLSYDGRISFTENHLDDIFDSADRPLEG 522
Query: 1411 RRWWLGAEDPFQCLATCVSLAEALRSPNPETVISHMPVHQDGSCNGLQHYAALGRDKLGA 1590
+RWWLGAEDPFQCLA C++L+EALRSP+PET ISH PVHQDGSCNGLQHYAALGRDKLGA
Sbjct: 523 QRWWLGAEDPFQCLAVCINLSEALRSPSPETAISHTPVHQDGSCNGLQHYAALGRDKLGA 582
Query: 1591 AAVNLTAGDKPADVYSGIAARVLEIMKTDAAGDPAIDPNAKHARLLIDQVDRKLVKQTVM 1770
AAVNL G KPADVYSGIAARVL+IM+ DA DPAI+PN+ HA+LLI+QVDRKLVKQTVM
Sbjct: 583 AAVNLVGGGKPADVYSGIAARVLDIMRRDAENDPAINPNSVHAKLLINQVDRKLVKQTVM 642
Query: 1771 TSVYGVTYIGARDQIKRRLKERHAIDDDSEMFACACYAAKTTLTALGEMFEAARSIMGWL 1950
TSVYGVTYIGARDQIKRRLKER I DD ++++ ACYAAKTTLTAL EMFE AR IM WL
Sbjct: 643 TSVYGVTYIGARDQIKRRLKERCNIADDPQLYSAACYAAKTTLTALEEMFEGARGIMAWL 702
Query: 1951 GDCAKIIAMENQPVRWTTPLGLPVVQPYRKLGKQVIKTSLQNLTLQRETDKVMTKRQRSA 2130
G+CAK+IA ENQPV+WTTP GLPVVQPYR+LG+Q+IKTSLQ LTLQRETDKVM KRQR+A
Sbjct: 703 GECAKVIASENQPVQWTTPFGLPVVQPYRQLGRQLIKTSLQVLTLQRETDKVMVKRQRTA 762
Query: 2131 FPPNFVHSLDSSHMMMTATACSKAGLYFAGVHDSYWTHACDVDTMNQILREKFVELYEQP 2310
FPPNFVHSLD SHMMMTA AC +AGL FAGVHDSYWTHACDVD MN+ILREKFVELYE P
Sbjct: 763 FPPNFVHSLDGSHMMMTAVACKEAGLNFAGVHDSYWTHACDVDEMNRILREKFVELYETP 822
Query: 2311 IXXXXXXXXXXXXPKLKFPSLPERGDFDLKEVLGSTYFFN 2430
I P LKFP LPERGDFDL++VL STYFFN
Sbjct: 823 ILENLLESFQSSFPNLKFPPLPERGDFDLRDVLQSTYFFN 862
>ref|NP_001062659.1| Os09g0246200 [Oryza sativa Japonica Group]
gi|30698494|dbj|BAC76604.1| RpoT1 [Oryza sativa Japonica
Group] gi|37360973|dbj|BAC98395.1| T7 bacteriophage-type
single subunit RNA polymerase [Oryza sativa Japonica
Group] gi|113630892|dbj|BAF24573.1| Os09g0246200 [Oryza
sativa Japonica Group]
Length = 1017
Score = 1240 bits (3209), Expect = 0.0
Identities = 597/815 (73%), Positives = 683/815 (83%), Gaps = 6/815 (0%)
Frame = +1
Query: 4 DMCEQKLAPNLPYVKSLFLGWFEPLRDAIAAEQELCKDSSRSTTHAPYFDQLPADMMAVI 183
DMC+QKLAPNLPYVKSLFLGWFEPLRD I AEQEL + +HA YF+ LPADMMAVI
Sbjct: 205 DMCQQKLAPNLPYVKSLFLGWFEPLRDQIIAEQELVGERGARASHARYFNMLPADMMAVI 264
Query: 184 TMHKLMALLMTGGCRNGVRVIQAAGHVGEAIEHEVRIHKFLETSKRKNALNRTCDEERDP 363
TMHKLM LLMTG VRVIQAA +GEAIEHEVRIHKFLE +K+K+ N+ D E +
Sbjct: 265 TMHKLMGLLMTGSGDGSVRVIQAACQIGEAIEHEVRIHKFLEKTKKKS--NKEMDNEEEG 322
Query: 364 A----AKEQERLTXXXXXXXXXXXXXXXRRIVSRQDDLKSWGQEAQLKVGCRLIQILMDT 531
AKEQERL R IV +QD+ K WGQ+A KVG RLI+++++T
Sbjct: 323 GDSDIAKEQERLRKKVTDLMKKQKIRQVRNIVKKQDNSKPWGQDAHAKVGSRLIELMIET 382
Query: 532 AYIQPPLDQMEDAPPDIRPAFVHALKSV--ETGKTSKRYGVIECDPIVRKGLEKTAKHMV 705
AYIQPP Q D PPDIRPAF H +++V E K+S+RYGVI+CDP+VR+GL++TAKHMV
Sbjct: 383 AYIQPPASQSADGPPDIRPAFTHEMRTVAREQQKSSRRYGVIKCDPLVRQGLDRTAKHMV 442
Query: 706 IPYMPMLVPPLNWTGYERGAYLFLPSYIMRTHGARQQREAVKKAPREQLEPVFKALNTLG 885
IPYMPML+PP++WTGY++GA+LFLPSY+MRTHGARQQR+AV++APREQ++ VF+ALNTLG
Sbjct: 443 IPYMPMLIPPISWTGYDKGAHLFLPSYVMRTHGARQQRDAVRRAPREQMQSVFEALNTLG 502
Query: 886 NTKWRVNKRILSVIDRIWANGGQLADLVDRXXXXXXXXXXXXXXXXIKKWRWNVKAVKKE 1065
+TKWRVNKR+LS++DRIW++GG+LADLVDR +KKWRW ++A KKE
Sbjct: 503 STKWRVNKRVLSIVDRIWSSGGRLADLVDRTDVALPEKPDTEDEDKLKKWRWTLRAAKKE 562
Query: 1066 NSERHSQRCDTELKLVVARKMKDEEGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGILEF 1245
NSERHSQRCD ELKL VARKMKDE+GFYYPHNLDFRGRAYPMHPYLNHLGSDLCRG+LEF
Sbjct: 563 NSERHSQRCDVELKLAVARKMKDEDGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGVLEF 622
Query: 1246 AEGRPLGKSGLHWMKIQLANVYGGGVDKLSYEGRVSFTENNLEDIFDSADRPLEGRRWWL 1425
AEGRPLGKSGL W+KI LAN+Y GGVDKLSY+GR++FTEN+LEDIFDSADRPLEG+RWWL
Sbjct: 623 AEGRPLGKSGLRWLKIHLANLYAGGVDKLSYDGRIAFTENHLEDIFDSADRPLEGKRWWL 682
Query: 1426 GAEDPFQCLATCVSLAEALRSPNPETVISHMPVHQDGSCNGLQHYAALGRDKLGAAAVNL 1605
GAEDPFQCLA C++L EALRSP+PET+ISH+PVHQDGSCNGLQHYAALGRDKLGA AVNL
Sbjct: 683 GAEDPFQCLAVCINLTEALRSPSPETMISHIPVHQDGSCNGLQHYAALGRDKLGAIAVNL 742
Query: 1606 TAGDKPADVYSGIAARVLEIMKTDAAGDPAIDPNAKHARLLIDQVDRKLVKQTVMTSVYG 1785
AG+KPADVY+GIA RV+EIMK DA DPA DP+A ARLL+DQVDRKLVKQTVMTSVYG
Sbjct: 743 VAGEKPADVYTGIATRVVEIMKNDALKDPATDPDAARARLLLDQVDRKLVKQTVMTSVYG 802
Query: 1786 VTYIGARDQIKRRLKERHAIDDDSEMFACACYAAKTTLTALGEMFEAARSIMGWLGDCAK 1965
VTY+GAR+QIKRRLKER I DDSE+F+ +CYAAK TLTALGEMF+AARSIM WLGDCAK
Sbjct: 803 VTYVGAREQIKRRLKERDMICDDSELFSASCYAAKVTLTALGEMFQAARSIMNWLGDCAK 862
Query: 1966 IIAMENQPVRWTTPLGLPVVQPYRKLGKQVIKTSLQNLTLQRETDKVMTKRQRSAFPPNF 2145
+IA EN+PVRWTTPLGLPVVQPYRKLG+ +IKTSLQ LTLQRETDKVM KRQR+AFPPNF
Sbjct: 863 VIACENEPVRWTTPLGLPVVQPYRKLGRHLIKTSLQVLTLQRETDKVMVKRQRTAFPPNF 922
Query: 2146 VHSLDSSHMMMTATACSKAGLYFAGVHDSYWTHACDVDTMNQILREKFVELYEQPIXXXX 2325
VHSLD SHMMMTA AC + GL FAGVHDSYWTHACDVDTMN+ILREKFVELY+ PI
Sbjct: 923 VHSLDGSHMMMTAVACKRQGLNFAGVHDSYWTHACDVDTMNKILREKFVELYDTPILENL 982
Query: 2326 XXXXXXXXPKLKFPSLPERGDFDLKEVLGSTYFFN 2430
P+LKFP LPERGDFDL +VLGS YFFN
Sbjct: 983 LESFEKSFPELKFPPLPERGDFDLTDVLGSPYFFN 1017
>gb|EEE69251.1| hypothetical protein OsJ_28503 [Oryza sativa Japonica Group]
Length = 983
Score = 1240 bits (3209), Expect = 0.0
Identities = 597/815 (73%), Positives = 683/815 (83%), Gaps = 6/815 (0%)
Frame = +1
Query: 4 DMCEQKLAPNLPYVKSLFLGWFEPLRDAIAAEQELCKDSSRSTTHAPYFDQLPADMMAVI 183
DMC+QKLAPNLPYVKSLFLGWFEPLRD I AEQEL + +HA YF+ LPADMMAVI
Sbjct: 171 DMCQQKLAPNLPYVKSLFLGWFEPLRDQIIAEQELVGERGARASHARYFNMLPADMMAVI 230
Query: 184 TMHKLMALLMTGGCRNGVRVIQAAGHVGEAIEHEVRIHKFLETSKRKNALNRTCDEERDP 363
TMHKLM LLMTG VRVIQAA +GEAIEHEVRIHKFLE +K+K+ N+ D E +
Sbjct: 231 TMHKLMGLLMTGSGDGSVRVIQAACQIGEAIEHEVRIHKFLEKTKKKS--NKEMDNEEEG 288
Query: 364 A----AKEQERLTXXXXXXXXXXXXXXXRRIVSRQDDLKSWGQEAQLKVGCRLIQILMDT 531
AKEQERL R IV +QD+ K WGQ+A KVG RLI+++++T
Sbjct: 289 GDSDIAKEQERLRKKVTDLMKKQKIRQVRNIVKKQDNSKPWGQDAHAKVGSRLIELMIET 348
Query: 532 AYIQPPLDQMEDAPPDIRPAFVHALKSV--ETGKTSKRYGVIECDPIVRKGLEKTAKHMV 705
AYIQPP Q D PPDIRPAF H +++V E K+S+RYGVI+CDP+VR+GL++TAKHMV
Sbjct: 349 AYIQPPASQSADGPPDIRPAFTHEMRTVAREQQKSSRRYGVIKCDPLVRQGLDRTAKHMV 408
Query: 706 IPYMPMLVPPLNWTGYERGAYLFLPSYIMRTHGARQQREAVKKAPREQLEPVFKALNTLG 885
IPYMPML+PP++WTGY++GA+LFLPSY+MRTHGARQQR+AV++APREQ++ VF+ALNTLG
Sbjct: 409 IPYMPMLIPPISWTGYDKGAHLFLPSYVMRTHGARQQRDAVRRAPREQMQSVFEALNTLG 468
Query: 886 NTKWRVNKRILSVIDRIWANGGQLADLVDRXXXXXXXXXXXXXXXXIKKWRWNVKAVKKE 1065
+TKWRVNKR+LS++DRIW++GG+LADLVDR +KKWRW ++A KKE
Sbjct: 469 STKWRVNKRVLSIVDRIWSSGGRLADLVDRTDVALPEKPDTEDEDKLKKWRWTLRAAKKE 528
Query: 1066 NSERHSQRCDTELKLVVARKMKDEEGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGILEF 1245
NSERHSQRCD ELKL VARKMKDE+GFYYPHNLDFRGRAYPMHPYLNHLGSDLCRG+LEF
Sbjct: 529 NSERHSQRCDVELKLAVARKMKDEDGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGVLEF 588
Query: 1246 AEGRPLGKSGLHWMKIQLANVYGGGVDKLSYEGRVSFTENNLEDIFDSADRPLEGRRWWL 1425
AEGRPLGKSGL W+KI LAN+Y GGVDKLSY+GR++FTEN+LEDIFDSADRPLEG+RWWL
Sbjct: 589 AEGRPLGKSGLRWLKIHLANLYAGGVDKLSYDGRIAFTENHLEDIFDSADRPLEGKRWWL 648
Query: 1426 GAEDPFQCLATCVSLAEALRSPNPETVISHMPVHQDGSCNGLQHYAALGRDKLGAAAVNL 1605
GAEDPFQCLA C++L EALRSP+PET+ISH+PVHQDGSCNGLQHYAALGRDKLGA AVNL
Sbjct: 649 GAEDPFQCLAVCINLTEALRSPSPETMISHIPVHQDGSCNGLQHYAALGRDKLGAIAVNL 708
Query: 1606 TAGDKPADVYSGIAARVLEIMKTDAAGDPAIDPNAKHARLLIDQVDRKLVKQTVMTSVYG 1785
AG+KPADVY+GIA RV+EIMK DA DPA DP+A ARLL+DQVDRKLVKQTVMTSVYG
Sbjct: 709 VAGEKPADVYTGIATRVVEIMKNDALKDPATDPDAARARLLLDQVDRKLVKQTVMTSVYG 768
Query: 1786 VTYIGARDQIKRRLKERHAIDDDSEMFACACYAAKTTLTALGEMFEAARSIMGWLGDCAK 1965
VTY+GAR+QIKRRLKER I DDSE+F+ +CYAAK TLTALGEMF+AARSIM WLGDCAK
Sbjct: 769 VTYVGAREQIKRRLKERDMICDDSELFSASCYAAKVTLTALGEMFQAARSIMNWLGDCAK 828
Query: 1966 IIAMENQPVRWTTPLGLPVVQPYRKLGKQVIKTSLQNLTLQRETDKVMTKRQRSAFPPNF 2145
+IA EN+PVRWTTPLGLPVVQPYRKLG+ +IKTSLQ LTLQRETDKVM KRQR+AFPPNF
Sbjct: 829 VIACENEPVRWTTPLGLPVVQPYRKLGRHLIKTSLQVLTLQRETDKVMVKRQRTAFPPNF 888
Query: 2146 VHSLDSSHMMMTATACSKAGLYFAGVHDSYWTHACDVDTMNQILREKFVELYEQPIXXXX 2325
VHSLD SHMMMTA AC + GL FAGVHDSYWTHACDVDTMN+ILREKFVELY+ PI
Sbjct: 889 VHSLDGSHMMMTAVACKRQGLNFAGVHDSYWTHACDVDTMNKILREKFVELYDTPILENL 948
Query: 2326 XXXXXXXXPKLKFPSLPERGDFDLKEVLGSTYFFN 2430
P+LKFP LPERGDFDL +VLGS YFFN
Sbjct: 949 LESFEKSFPELKFPPLPERGDFDLTDVLGSPYFFN 983
>ref|XP_006660444.1| PREDICTED: DNA-directed RNA polymerase 1B, mitochondrial-like isoform
X2 [Oryza brachyantha]
Length = 839
Score = 1240 bits (3208), Expect = 0.0
Identities = 597/813 (73%), Positives = 680/813 (83%), Gaps = 4/813 (0%)
Frame = +1
Query: 4 DMCEQKLAPNLPYVKSLFLGWFEPLRDAIAAEQELCKDSSRSTTHAPYFDQLPADMMAVI 183
DMCE KLAPNLPYVKSLFLGWFEPLRD I AEQ+L + +HA YF+ LPADMMAVI
Sbjct: 27 DMCEHKLAPNLPYVKSLFLGWFEPLRDQIIAEQDLVCERRARASHARYFNMLPADMMAVI 86
Query: 184 TMHKLMALLMTGGCRNGVRVIQAAGHVGEAIEHEVRIHKFLETSKRKNALNRTCDEER-- 357
TMHKLM LLMTG VRVIQAA +GEAIEHEVR+HKFLE K+K + +EE
Sbjct: 87 TMHKLMGLLMTGSGDGSVRVIQAACQIGEAIEHEVRLHKFLEKPKKKRSKEMDNEEEVGC 146
Query: 358 DPAAKEQERLTXXXXXXXXXXXXXXXRRIVSRQDDLKSWGQEAQLKVGCRLIQILMDTAY 537
AKEQERL R IV +QD+ K WGQ+ KVG RLI+++++TAY
Sbjct: 147 SDIAKEQERLRKKVTDLMKKHKLRQVRYIVKKQDNSKPWGQDVHAKVGSRLIELMIETAY 206
Query: 538 IQPPLDQMEDAPPDIRPAFVHALKSV--ETGKTSKRYGVIECDPIVRKGLEKTAKHMVIP 711
IQPP Q D PPDIRPAF H +++V E K+S+RYGVI+CDP+VR+GL++TAKHMVIP
Sbjct: 207 IQPPASQSADGPPDIRPAFTHEMRTVAKEQQKSSRRYGVIKCDPLVRQGLDRTAKHMVIP 266
Query: 712 YMPMLVPPLNWTGYERGAYLFLPSYIMRTHGARQQREAVKKAPREQLEPVFKALNTLGNT 891
YMPML+PP++WTGY++GA+LFLPSY+MRTHGARQQREAVK+APREQ++ VF+AL+TLG+T
Sbjct: 267 YMPMLIPPISWTGYDKGAHLFLPSYVMRTHGARQQREAVKRAPREQMQSVFEALDTLGST 326
Query: 892 KWRVNKRILSVIDRIWANGGQLADLVDRXXXXXXXXXXXXXXXXIKKWRWNVKAVKKENS 1071
KWRVNKR+LS++DRIW++GG+LADLVDR +KKWRWN+KA KKENS
Sbjct: 327 KWRVNKRVLSIVDRIWSSGGRLADLVDRSDVALPEKPDTEDEAKLKKWRWNLKAAKKENS 386
Query: 1072 ERHSQRCDTELKLVVARKMKDEEGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGILEFAE 1251
ERHSQRCD ELKL VARKMKDEEGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRG+LEFAE
Sbjct: 387 ERHSQRCDVELKLAVARKMKDEEGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGVLEFAE 446
Query: 1252 GRPLGKSGLHWMKIQLANVYGGGVDKLSYEGRVSFTENNLEDIFDSADRPLEGRRWWLGA 1431
GRPLGKSGL W+KI LAN+Y GGVDKLSY+GR++FTEN+LEDIFDSADRPLEG+RWWLGA
Sbjct: 447 GRPLGKSGLRWLKIHLANLYAGGVDKLSYDGRIAFTENHLEDIFDSADRPLEGKRWWLGA 506
Query: 1432 EDPFQCLATCVSLAEALRSPNPETVISHMPVHQDGSCNGLQHYAALGRDKLGAAAVNLTA 1611
EDPFQCLA C++L EALRSP+PET+ISH+PVHQDGSCNGLQHYAALGRDKLGA AVNL A
Sbjct: 507 EDPFQCLAVCINLTEALRSPSPETMISHIPVHQDGSCNGLQHYAALGRDKLGAIAVNLVA 566
Query: 1612 GDKPADVYSGIAARVLEIMKTDAAGDPAIDPNAKHARLLIDQVDRKLVKQTVMTSVYGVT 1791
G+KPADVY+GIA RVLEIM+ DA DPA DP+A AR+L+DQVDRKLVKQTVMTSVYGVT
Sbjct: 567 GEKPADVYTGIATRVLEIMRNDALKDPATDPDAARARMLVDQVDRKLVKQTVMTSVYGVT 626
Query: 1792 YIGARDQIKRRLKERHAIDDDSEMFACACYAAKTTLTALGEMFEAARSIMGWLGDCAKII 1971
Y+GAR+QIKRRLKER I DDSE+F+ +CYAAK TLTALGEMF+AARSIM WLGDCAKII
Sbjct: 627 YVGAREQIKRRLKERDMIGDDSELFSASCYAAKVTLTALGEMFQAARSIMNWLGDCAKII 686
Query: 1972 AMENQPVRWTTPLGLPVVQPYRKLGKQVIKTSLQNLTLQRETDKVMTKRQRSAFPPNFVH 2151
A EN+PV+WTTPLGLPVVQPYRKLG+ +IKTSLQ LTLQRETDKVM KRQR+AFPPNFVH
Sbjct: 687 ACENEPVKWTTPLGLPVVQPYRKLGRHLIKTSLQVLTLQRETDKVMVKRQRTAFPPNFVH 746
Query: 2152 SLDSSHMMMTATACSKAGLYFAGVHDSYWTHACDVDTMNQILREKFVELYEQPIXXXXXX 2331
SLD SHMMMTA AC + GL FAGVHDSYWTHACDVDTMN+ILREKFVELY+ PI
Sbjct: 747 SLDGSHMMMTAVACKRQGLNFAGVHDSYWTHACDVDTMNKILREKFVELYDTPILENLLG 806
Query: 2332 XXXXXXPKLKFPSLPERGDFDLKEVLGSTYFFN 2430
P+LKFP LPERGDFDLK+VLGS YFFN
Sbjct: 807 SFEKSFPELKFPPLPERGDFDLKDVLGSPYFFN 839
>ref|XP_002461035.1| hypothetical protein SORBIDRAFT_02g039520 [Sorghum bicolor]
gi|241924412|gb|EER97556.1| hypothetical protein
SORBIDRAFT_02g039520 [Sorghum bicolor]
Length = 976
Score = 1228 bits (3177), Expect = 0.0
Identities = 592/816 (72%), Positives = 678/816 (83%), Gaps = 7/816 (0%)
Frame = +1
Query: 4 DMCEQKLAPNLPYVKSLFLGWFEPLRDAIAAEQELCKDSSRSTTHAPYFDQLPADMMAVI 183
DMCEQKLAPNLPY+KSLFLGWFEPLRD I EQEL D +H PYF+ LPADMMAVI
Sbjct: 163 DMCEQKLAPNLPYIKSLFLGWFEPLRDQIVTEQELVADPGSRASHGPYFNMLPADMMAVI 222
Query: 184 TMHKLMALLMTGGCRNGVRVIQAAGHVGEAIEHEVRIHKFLETSKRKNALNRTCDEERDP 363
TMHKLM LLMTG VRVIQAA +GEAIEHEVRI++FLE +++K+ N+ ++E +
Sbjct: 223 TMHKLMGLLMTGSGDGSVRVIQAACQIGEAIEHEVRINRFLEKTRKKS--NKEMEKEEEA 280
Query: 364 A-----AKEQERLTXXXXXXXXXXXXXXXRRIVSRQDDLKSWGQEAQLKVGCRLIQILMD 528
A AKEQ+RL R IV QD+ + WGQ+ Q KVG RLI++ MD
Sbjct: 281 AGDTDIAKEQQRLRKKVTDLMKKQKLRQVRNIVKNQDNSRPWGQDVQAKVGSRLIELFMD 340
Query: 529 TAYIQPPLDQMEDAPPDIRPAFVHALKSV--ETGKTSKRYGVIECDPIVRKGLEKTAKHM 702
TA+IQPP Q D PDIRPAF H +++V E K+S+RYGVI+CDP+VR+GL++TAKHM
Sbjct: 341 TAHIQPPASQSSDGLPDIRPAFRHEMRTVAKEQQKSSRRYGVIKCDPLVRQGLDRTAKHM 400
Query: 703 VIPYMPMLVPPLNWTGYERGAYLFLPSYIMRTHGARQQREAVKKAPREQLEPVFKALNTL 882
VIPYMPML+PP+ WTGY++GA+LFLPSY+MRTHGARQQREAVK+APREQ++ VF+ALNTL
Sbjct: 401 VIPYMPMLIPPICWTGYDKGAHLFLPSYVMRTHGARQQREAVKRAPREQMQSVFEALNTL 460
Query: 883 GNTKWRVNKRILSVIDRIWANGGQLADLVDRXXXXXXXXXXXXXXXXIKKWRWNVKAVKK 1062
G+TKWRVNKR+LS++DRIW++GG+LADLVDR IK W+W++++VKK
Sbjct: 461 GSTKWRVNKRVLSIVDRIWSSGGRLADLVDRTDVPLPEKPDTEDETLIKNWKWHLRSVKK 520
Query: 1063 ENSERHSQRCDTELKLVVARKMKDEEGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGILE 1242
ENSERHSQRCD ELKL VARKMKDEEGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGILE
Sbjct: 521 ENSERHSQRCDVELKLAVARKMKDEEGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGILE 580
Query: 1243 FAEGRPLGKSGLHWMKIQLANVYGGGVDKLSYEGRVSFTENNLEDIFDSADRPLEGRRWW 1422
FAEGRPLGKSGLHW+KI LAN+Y GGVDKLSY+GRV+FTEN+LE+IFDSADRPLEG+RWW
Sbjct: 581 FAEGRPLGKSGLHWLKIHLANLYAGGVDKLSYDGRVAFTENHLEEIFDSADRPLEGKRWW 640
Query: 1423 LGAEDPFQCLATCVSLAEALRSPNPETVISHMPVHQDGSCNGLQHYAALGRDKLGAAAVN 1602
LGAEDPFQCLA C++L EALRS +PET ISH+PVHQDGSCNGLQHYAALGRDKLGA AVN
Sbjct: 641 LGAEDPFQCLAVCMNLTEALRSSSPETTISHIPVHQDGSCNGLQHYAALGRDKLGAIAVN 700
Query: 1603 LTAGDKPADVYSGIAARVLEIMKTDAAGDPAIDPNAKHARLLIDQVDRKLVKQTVMTSVY 1782
L AG+KPADVY+GIA RVLEIM+ DA DP+IDP+ ARL++DQVDRKLVKQTVMTSVY
Sbjct: 701 LVAGEKPADVYTGIATRVLEIMRMDAQKDPSIDPDVARARLIVDQVDRKLVKQTVMTSVY 760
Query: 1783 GVTYIGARDQIKRRLKERHAIDDDSEMFACACYAAKTTLTALGEMFEAARSIMGWLGDCA 1962
GVTY+GARDQIKRRLKER I D++E+F +CYAAK TLTALGEMF+AAR IM WLGDCA
Sbjct: 761 GVTYVGARDQIKRRLKERGVIPDEAELFGASCYAAKVTLTALGEMFQAARGIMNWLGDCA 820
Query: 1963 KIIAMENQPVRWTTPLGLPVVQPYRKLGKQVIKTSLQNLTLQRETDKVMTKRQRSAFPPN 2142
K+IA EN+PVRWTTPLGLPVVQPYRKLG+ +IKTSLQ LTLQRETDKVM KRQR+AFPPN
Sbjct: 821 KVIACENEPVRWTTPLGLPVVQPYRKLGRHLIKTSLQVLTLQRETDKVMVKRQRTAFPPN 880
Query: 2143 FVHSLDSSHMMMTATACSKAGLYFAGVHDSYWTHACDVDTMNQILREKFVELYEQPIXXX 2322
FVHSLD SHMMMTA AC + GL FAGVHDSYWTHACDVDTMN+ILREKFVELY+ PI
Sbjct: 881 FVHSLDGSHMMMTAVACKRQGLNFAGVHDSYWTHACDVDTMNKILREKFVELYDTPILEN 940
Query: 2323 XXXXXXXXXPKLKFPSLPERGDFDLKEVLGSTYFFN 2430
PKLKFP LPERGDFD+KEVL S YFFN
Sbjct: 941 LLESFEKSFPKLKFPPLPERGDFDMKEVLESPYFFN 976
>ref|XP_002311418.2| hypothetical protein POPTR_0008s11200g [Populus trichocarpa]
gi|550332836|gb|EEE88785.2| hypothetical protein
POPTR_0008s11200g [Populus trichocarpa]
Length = 988
Score = 1228 bits (3176), Expect = 0.0
Identities = 604/820 (73%), Positives = 679/820 (82%), Gaps = 11/820 (1%)
Frame = +1
Query: 4 DMCEQKLAPNLPYVKSLFLGWFEPLRDAIAAEQELCKDSSRSTTHAPYFDQLPADMMAVI 183
DMCEQKLAPNLPYVKSLFLGWFEPLRDAI AEQELCK + R +H +F LPADMMAVI
Sbjct: 170 DMCEQKLAPNLPYVKSLFLGWFEPLRDAIVAEQELCKRNLR-VSHRAHFSDLPADMMAVI 228
Query: 184 TMHKLMALLMTG-GCRNGVRVIQAAGHVGEAIEHEVRIHKFLE-TSKRKNALNRTCDEER 357
TMHKLM LLMTG G +RV+QAA VGEAIEHE RIHKFLE T KRKN + + E
Sbjct: 229 TMHKLMGLLMTGNGGSASIRVVQAASVVGEAIEHEGRIHKFLEKTKKRKNVEAKISEGES 288
Query: 358 DPA-------AKEQERLTXXXXXXXXXXXXXXXRRIVSRQDDLKSWGQEAQLKVGCRLIQ 516
D A +KEQE+L RRIV DD + WGQE +KVG RLIQ
Sbjct: 289 DAAIEEGEKLSKEQEKLRKKVTTLIKKQKVQQVRRIVKGHDDSRPWGQEEHVKVGSRLIQ 348
Query: 517 ILMDTAYIQPPLDQMEDAPPDIRPAFVHALKSV--ETGKTSKRYGVIECDPIVRKGLEKT 690
++++TAYIQPP+DQ+ D PPDIRPAFVH LK++ +T K+S+RYGVIECDP+VRKGLEK+
Sbjct: 349 LMIETAYIQPPIDQIGDGPPDIRPAFVHTLKTITKDTQKSSRRYGVIECDPLVRKGLEKS 408
Query: 691 AKHMVIPYMPMLVPPLNWTGYERGAYLFLPSYIMRTHGARQQREAVKKAPREQLEPVFKA 870
A+HMVIPYMPMLVPPLNWTGY++GA+LFLPSY+MR HG++QQR+AVK+A R QLEPVFKA
Sbjct: 409 ARHMVIPYMPMLVPPLNWTGYDQGAHLFLPSYVMRIHGSKQQRDAVKRASRNQLEPVFKA 468
Query: 871 LNTLGNTKWRVNKRILSVIDRIWANGGQLADLVDRXXXXXXXXXXXXXXXXIKKWRWNVK 1050
L+TLGNTKWR+NKR+L V+DRIWA+GG LA LVDR I+KW W V+
Sbjct: 469 LDTLGNTKWRINKRVLVVVDRIWASGGHLAGLVDREDAPLPEEPQTEDEAEIRKWTWKVR 528
Query: 1051 AVKKENSERHSQRCDTELKLVVARKMKDEEGFYYPHNLDFRGRAYPMHPYLNHLGSDLCR 1230
+VKKENSERHSQRCD ELKL VARKMKDEEGFYYPHNLDFRGRAYPMHPYLNHLGSD+CR
Sbjct: 529 SVKKENSERHSQRCDIELKLAVARKMKDEEGFYYPHNLDFRGRAYPMHPYLNHLGSDVCR 588
Query: 1231 GILEFAEGRPLGKSGLHWMKIQLANVYGGGVDKLSYEGRVSFTENNLEDIFDSADRPLEG 1410
GILEFAEGRPLGKSGL W+KI LAN+Y GGVDKLSY+GR+SFTEN+L+DIFDSAD+PLEG
Sbjct: 589 GILEFAEGRPLGKSGLRWLKIHLANLYAGGVDKLSYDGRISFTENHLDDIFDSADQPLEG 648
Query: 1411 RRWWLGAEDPFQCLATCVSLAEALRSPNPETVISHMPVHQDGSCNGLQHYAALGRDKLGA 1590
RRWWLGAEDPFQCLA C++L+EALRSP+PET SH PVHQDGSCNGLQHYAALGRDKLGA
Sbjct: 649 RRWWLGAEDPFQCLAACINLSEALRSPSPETATSHTPVHQDGSCNGLQHYAALGRDKLGA 708
Query: 1591 AAVNLTAGDKPADVYSGIAARVLEIMKTDAAGDPAIDPNAKHARLLIDQVDRKLVKQTVM 1770
AAVNL G+KPADVYSGIA RVL+IM+ DA DPAI+PN+ HA+LL++QVDRKLVKQTVM
Sbjct: 709 AAVNLVGGEKPADVYSGIATRVLDIMQRDAEKDPAINPNSVHAKLLVNQVDRKLVKQTVM 768
Query: 1771 TSVYGVTYIGARDQIKRRLKERHAIDDDSEMFACACYAAKTTLTALGEMFEAARSIMGWL 1950
TSVYGVTYIGARDQIKRRLKER I DD ++++ ACYAAKTTL AL EMFE AR IM WL
Sbjct: 769 TSVYGVTYIGARDQIKRRLKERCIIADDPQLYSAACYAAKTTLMALEEMFEGARGIMAWL 828
Query: 1951 GDCAKIIAMENQPVRWTTPLGLPVVQPYRKLGKQVIKTSLQNLTLQRETDKVMTKRQRSA 2130
G+CAK+IA ENQPVRWTTPLGLPVVQPYR+LG+ +IKTSLQ LTL+RETDKVM KRQR+A
Sbjct: 829 GECAKVIASENQPVRWTTPLGLPVVQPYRQLGRHLIKTSLQVLTLKRETDKVMVKRQRTA 888
Query: 2131 FPPNFVHSLDSSHMMMTATACSKAGLYFAGVHDSYWTHACDVDTMNQILREKFVELYEQP 2310
FPPNFVHSLD SHMMMTA AC +AGL FAGVHDSYWTHACDVD MN+ILREKFVELYE P
Sbjct: 889 FPPNFVHSLDGSHMMMTAVACKEAGLNFAGVHDSYWTHACDVDEMNRILREKFVELYEAP 948
Query: 2311 IXXXXXXXXXXXXPKLKFPSLPERGDFDLKEVLGSTYFFN 2430
I P LKFP LPERG FDLK+VL STYFFN
Sbjct: 949 ILENLLESFQSSFPNLKFPPLPERGVFDLKDVLRSTYFFN 988
>ref|XP_007045721.1| DNA-directed RNA polymerase isoform 1 [Theobroma cacao]
gi|590698457|ref|XP_007045722.1| DNA-directed RNA
polymerase isoform 1 [Theobroma cacao]
gi|508709656|gb|EOY01553.1| DNA-directed RNA polymerase
isoform 1 [Theobroma cacao] gi|508709657|gb|EOY01554.1|
DNA-directed RNA polymerase isoform 1 [Theobroma cacao]
Length = 996
Score = 1228 bits (3176), Expect = 0.0
Identities = 593/820 (72%), Positives = 679/820 (82%), Gaps = 10/820 (1%)
Frame = +1
Query: 1 VDMCEQKLAPNLPYVKSLFLGWFEPLRDAIAAEQELCKDSSRSTTHAPYFDQLPADMMAV 180
+DMCE KLAPNLPY+KSLFLGWFEPLRD+I EQELCK++ R +HA YF++L ADMMAV
Sbjct: 178 MDMCEHKLAPNLPYIKSLFLGWFEPLRDSIVGEQELCKENCR-ISHAAYFNELSADMMAV 236
Query: 181 ITMHKLMALLMTGGC-RNGVRVIQAAGHVGEAIEHEVRIHKFLETSKRKNALNRTCDEER 357
+TMHKLM LLMT G+RV+QAA +GEAIEHE +I FL +K+K ++ D E
Sbjct: 237 VTMHKLMGLLMTNTAGTGGIRVVQAACQIGEAIEHEAKIQSFLGKTKKKKTTDKKPDGES 296
Query: 358 DPAA-------KEQERLTXXXXXXXXXXXXXXXRRIVSRQDDLKSWGQEAQLKVGCRLIQ 516
+P K+QE+L R+IV D KSWGQEA +KVGCRLIQ
Sbjct: 297 EPVTNKQEKLVKDQEKLRKKVTQLLKKQKVHQVRKIVKGHDTSKSWGQEAHVKVGCRLIQ 356
Query: 517 ILMDTAYIQPPLDQMEDAPPDIRPAFVHALKSV--ETGKTSKRYGVIECDPIVRKGLEKT 690
+L++ AYIQPP+DQ+ D PPDIRPAFVH+LK++ + K S+RYGVIECD +VRKGLEKT
Sbjct: 357 LLIENAYIQPPVDQLGDCPPDIRPAFVHSLKTITKDGNKGSRRYGVIECDLLVRKGLEKT 416
Query: 691 AKHMVIPYMPMLVPPLNWTGYERGAYLFLPSYIMRTHGARQQREAVKKAPREQLEPVFKA 870
A+HMVIPYMPMLVPP NWTGY+RGAYLFLPSY+MRTHGA+QQRE VK+ PR+QLEP+F+A
Sbjct: 417 ARHMVIPYMPMLVPPQNWTGYDRGAYLFLPSYVMRTHGAKQQRETVKRTPRKQLEPIFEA 476
Query: 871 LNTLGNTKWRVNKRILSVIDRIWANGGQLADLVDRXXXXXXXXXXXXXXXXIKKWRWNVK 1050
L+TLGNTKWR+NKR+L V+DR+WANGG++A LVDR I+KW+W VK
Sbjct: 477 LDTLGNTKWRINKRVLGVVDRLWANGGRVASLVDREDVPLPEKPDTEDEAEIQKWKWKVK 536
Query: 1051 AVKKENSERHSQRCDTELKLVVARKMKDEEGFYYPHNLDFRGRAYPMHPYLNHLGSDLCR 1230
A K+N+ERHS RCD ELKL VARKM+DE+GFYYPHNLDFRGRAYPMHPYLNHLGSDLCR
Sbjct: 537 AANKQNNERHSLRCDVELKLAVARKMRDEDGFYYPHNLDFRGRAYPMHPYLNHLGSDLCR 596
Query: 1231 GILEFAEGRPLGKSGLHWMKIQLANVYGGGVDKLSYEGRVSFTENNLEDIFDSADRPLEG 1410
G+LEFAEGRPLGKSGL W+KI LAN+Y GGVDKLSYEGR++FTEN+L+DIFDSADRPLEG
Sbjct: 597 GVLEFAEGRPLGKSGLRWLKIHLANLYAGGVDKLSYEGRIAFTENHLDDIFDSADRPLEG 656
Query: 1411 RRWWLGAEDPFQCLATCVSLAEALRSPNPETVISHMPVHQDGSCNGLQHYAALGRDKLGA 1590
RRWWL AEDPFQCLA C++L+EALRS +PET ISHMPVHQDGSCNGLQHYAALGRDKLGA
Sbjct: 657 RRWWLSAEDPFQCLAACINLSEALRSSSPETTISHMPVHQDGSCNGLQHYAALGRDKLGA 716
Query: 1591 AAVNLTAGDKPADVYSGIAARVLEIMKTDAAGDPAIDPNAKHARLLIDQVDRKLVKQTVM 1770
A+VNL AG+KPADVYSGIAARV++IM+ DA DPAI+P+A HARLLI+QVDRKLVKQTVM
Sbjct: 717 ASVNLVAGEKPADVYSGIAARVVDIMRRDAEKDPAINPHALHARLLINQVDRKLVKQTVM 776
Query: 1771 TSVYGVTYIGARDQIKRRLKERHAIDDDSEMFACACYAAKTTLTALGEMFEAARSIMGWL 1950
TSVYGVTYIGARDQIKRRLKER AI DD+EMF +CYAA+TTLTALGEMF+AARSIM WL
Sbjct: 777 TSVYGVTYIGARDQIKRRLKERCAIADDTEMFVASCYAARTTLTALGEMFQAARSIMNWL 836
Query: 1951 GDCAKIIAMENQPVRWTTPLGLPVVQPYRKLGKQVIKTSLQNLTLQRETDKVMTKRQRSA 2130
G+CAK+I+ ENQPVRW TPLGLPVVQPYR+LG+ +IKTSLQ LTLQRETDKVM KRQR+A
Sbjct: 837 GECAKVISSENQPVRWVTPLGLPVVQPYRQLGRHLIKTSLQVLTLQRETDKVMAKRQRTA 896
Query: 2131 FPPNFVHSLDSSHMMMTATACSKAGLYFAGVHDSYWTHACDVDTMNQILREKFVELYEQP 2310
FPPNFVHSLD SHMMMTA AC KAGL FAGVHDSYWTHACDVD MN+ILREKFVELYE P
Sbjct: 897 FPPNFVHSLDGSHMMMTAVACKKAGLNFAGVHDSYWTHACDVDEMNRILREKFVELYEAP 956
Query: 2311 IXXXXXXXXXXXXPKLKFPSLPERGDFDLKEVLGSTYFFN 2430
I P L FP LPERGDFDL+EVL S YFFN
Sbjct: 957 ILENLLESFQKSFPSLNFPPLPERGDFDLREVLESPYFFN 996
>ref|XP_002514571.1| DNA-directed RNA polymerase 2, chloroplast/mitochondrial precursor,
putative [Ricinus communis] gi|223546175|gb|EEF47677.1|
DNA-directed RNA polymerase 2, chloroplast/mitochondrial
precursor, putative [Ricinus communis]
Length = 997
Score = 1226 bits (3173), Expect = 0.0
Identities = 598/821 (72%), Positives = 675/821 (82%), Gaps = 12/821 (1%)
Frame = +1
Query: 4 DMCEQKLAPNLPYVKSLFLGWFEPLRDAIAAEQELCKDSSRSTTHAPYFDQLPADMMAVI 183
DMCEQKLAPNLPY+KSLFLGWFEPLRDAIA EQEL ++ + +H PYFD LPADMMAVI
Sbjct: 177 DMCEQKLAPNLPYIKSLFLGWFEPLRDAIAKEQELSREKNNKLSHGPYFDALPADMMAVI 236
Query: 184 TMHKLMALLMTGGCRNG-VRVIQAAGHVGEAIEHEVRIHKFLETSKRKNALNRTCDEE-- 354
TMHKLM LLMT NG VRV+QAA VGEAIEHE RIH+FLE +K+K + + E
Sbjct: 237 TMHKLMGLLMTTNGGNGSVRVVQAACAVGEAIEHEARIHRFLEKTKKKKKSTKNEEPEGK 296
Query: 355 -------RDPAAKEQERLTXXXXXXXXXXXXXXXRRIVSRQDDLKSWGQEAQLKVGCRLI 513
+ AKEQE+L R + DD WGQEAQ+KVGCRLI
Sbjct: 297 LEPVTSDAEKLAKEQEKLRKKVTELMKKQKVQQVRGLTKGHDDSMPWGQEAQVKVGCRLI 356
Query: 514 QILMDTAYIQPPLDQMEDAPPDIRPAFVHALKSV--ETGKTSKRYGVIECDPIVRKGLEK 687
Q+L++TAYIQPP++Q+ D PDIRPAF+H LK+V +T KTS+RYGVIECDPIVR GLEK
Sbjct: 357 QLLIETAYIQPPVNQLGDGLPDIRPAFMHTLKNVMKDTQKTSRRYGVIECDPIVRNGLEK 416
Query: 688 TAKHMVIPYMPMLVPPLNWTGYERGAYLFLPSYIMRTHGARQQREAVKKAPREQLEPVFK 867
+A+HMVIPYMPMLVPPLNW GY++GAYLFLPSY+MRTHGA+QQR AVK+ P +QLEPV++
Sbjct: 417 SARHMVIPYMPMLVPPLNWEGYDQGAYLFLPSYVMRTHGAKQQRNAVKRTPWKQLEPVYE 476
Query: 868 ALNTLGNTKWRVNKRILSVIDRIWANGGQLADLVDRXXXXXXXXXXXXXXXXIKKWRWNV 1047
ALNTLGNTKWR+NK+IL+V+DRIWANGG+LA L+DR IKKW+W V
Sbjct: 477 ALNTLGNTKWRINKKILTVVDRIWANGGRLAGLIDREDEPLPEELETEDENEIKKWKWKV 536
Query: 1048 KAVKKENSERHSQRCDTELKLVVARKMKDEEGFYYPHNLDFRGRAYPMHPYLNHLGSDLC 1227
K VKKENSERHSQRCD ELKL VARKMKDE+GFYYPHNLDFRGRAYPMHP+LNHLGSD+C
Sbjct: 537 KNVKKENSERHSQRCDIELKLAVARKMKDEDGFYYPHNLDFRGRAYPMHPHLNHLGSDMC 596
Query: 1228 RGILEFAEGRPLGKSGLHWMKIQLANVYGGGVDKLSYEGRVSFTENNLEDIFDSADRPLE 1407
RGILEFAEGRPLGKSG W+KI LANVY GGVDKLSYEGRV+FTEN+L+ IFDSADRPLE
Sbjct: 597 RGILEFAEGRPLGKSGFRWLKIHLANVYAGGVDKLSYEGRVAFTENHLDYIFDSADRPLE 656
Query: 1408 GRRWWLGAEDPFQCLATCVSLAEALRSPNPETVISHMPVHQDGSCNGLQHYAALGRDKLG 1587
GRRWWLGAEDPFQCLATC +LAEA RS +PET ISHMP+HQDGSCNGLQHYAALGRDKLG
Sbjct: 657 GRRWWLGAEDPFQCLATCFNLAEAFRSSSPETTISHMPIHQDGSCNGLQHYAALGRDKLG 716
Query: 1588 AAAVNLTAGDKPADVYSGIAARVLEIMKTDAAGDPAIDPNAKHARLLIDQVDRKLVKQTV 1767
AAAVNL +G+KPADVYSGIAARVL+IM+TDA DP +PNA HA+LLI++VDRKLVKQTV
Sbjct: 717 AAAVNLVSGEKPADVYSGIAARVLDIMRTDAEKDPGTNPNALHAKLLINEVDRKLVKQTV 776
Query: 1768 MTSVYGVTYIGARDQIKRRLKERHAIDDDSEMFACACYAAKTTLTALGEMFEAARSIMGW 1947
MTSVYGVTYIGARDQIKRRLKER A+ DD ++A +CYAAKTTL AL EMFE ARSIM W
Sbjct: 777 MTSVYGVTYIGARDQIKRRLKERDAVADDPSLYAASCYAAKTTLMALEEMFEGARSIMAW 836
Query: 1948 LGDCAKIIAMENQPVRWTTPLGLPVVQPYRKLGKQVIKTSLQNLTLQRETDKVMTKRQRS 2127
LG+CAK+IA ENQPV+WTTPLGLPVVQPYR+LG+ +IKTSLQ L LQ+ETDK+M KRQR+
Sbjct: 837 LGECAKVIASENQPVQWTTPLGLPVVQPYRQLGRHLIKTSLQMLALQKETDKIMVKRQRT 896
Query: 2128 AFPPNFVHSLDSSHMMMTATACSKAGLYFAGVHDSYWTHACDVDTMNQILREKFVELYEQ 2307
AFPPNFVHSLD SHMMMTA AC AGL FAGVHDSYWTHACDVD MN+ILRE FVELYE
Sbjct: 897 AFPPNFVHSLDGSHMMMTAVACKHAGLNFAGVHDSYWTHACDVDEMNRILRENFVELYEA 956
Query: 2308 PIXXXXXXXXXXXXPKLKFPSLPERGDFDLKEVLGSTYFFN 2430
PI PKLKFP LP+RGDFDL++VL S YFFN
Sbjct: 957 PILENLLEGFQKSFPKLKFPPLPDRGDFDLRDVLESPYFFN 997
>ref|XP_003577161.1| PREDICTED: DNA-directed RNA polymerase 2,
chloroplastic/mitochondrial-like [Brachypodium
distachyon]
Length = 992
Score = 1224 bits (3167), Expect = 0.0
Identities = 586/813 (72%), Positives = 678/813 (83%), Gaps = 4/813 (0%)
Frame = +1
Query: 4 DMCEQKLAPNLPYVKSLFLGWFEPLRDAIAAEQELCKDSSRSTTHAPYFDQLPADMMAVI 183
DMCE KLAPNLPYVKSLFLGWFEPLRD I AEQEL + +HAPYF+ LPADMMAVI
Sbjct: 180 DMCEHKLAPNLPYVKSLFLGWFEPLRDQIIAEQELVGERGARASHAPYFNMLPADMMAVI 239
Query: 184 TMHKLMALLMTGGCRNGVRVIQAAGHVGEAIEHEVRIHKFLETSKRKNA--LNRTCDEER 357
TMHKLM LLMTG VRVIQAA +GEAIEHEVRIHKFLE +K+KN ++ +
Sbjct: 240 TMHKLMGLLMTGSGDGSVRVIQAACQIGEAIEHEVRIHKFLEKTKKKNTKEVDNVVEAGD 299
Query: 358 DPAAKEQERLTXXXXXXXXXXXXXXXRRIVSRQDDLKSWGQEAQLKVGCRLIQILMDTAY 537
AKEQ+RL R IV +QD + WGQ+A KVG RLI++L++TA+
Sbjct: 300 SDIAKEQQRLRKKVTDLMKKQKIRQVRNIVKKQDSTRPWGQDAHAKVGSRLIELLIETAH 359
Query: 538 IQPPLDQMEDAPPDIRPAFVHALKSV--ETGKTSKRYGVIECDPIVRKGLEKTAKHMVIP 711
IQPP+ Q D+ PDIRPAF H +++V E K+S+RYGVI+CDP++R+GL++TAKHMVIP
Sbjct: 360 IQPPVSQSADSTPDIRPAFTHEMRTVTREQQKSSRRYGVIKCDPLIRQGLDRTAKHMVIP 419
Query: 712 YMPMLVPPLNWTGYERGAYLFLPSYIMRTHGARQQREAVKKAPREQLEPVFKALNTLGNT 891
YMPML+PP++WTGY++GA+LFLPSY+MRTHGARQQREAVKKAP+EQ++ +F+AL+TLG+T
Sbjct: 420 YMPMLIPPISWTGYDKGAHLFLPSYVMRTHGARQQREAVKKAPKEQMQLIFEALDTLGST 479
Query: 892 KWRVNKRILSVIDRIWANGGQLADLVDRXXXXXXXXXXXXXXXXIKKWRWNVKAVKKENS 1071
KWR+NK++LS++DRIW++GG+LADLVDR +KKWRWN+++VKKENS
Sbjct: 480 KWRINKKVLSIVDRIWSSGGRLADLVDRTDVALPEKPDTEDETELKKWRWNLRSVKKENS 539
Query: 1072 ERHSQRCDTELKLVVARKMKDEEGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGILEFAE 1251
ERHSQRCD ELKL VARKMKDE GFYYPHNLDFRGRAYPMHPYLNHLGSDLCRG+LEF+E
Sbjct: 540 ERHSQRCDVELKLAVARKMKDEVGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGVLEFSE 599
Query: 1252 GRPLGKSGLHWMKIQLANVYGGGVDKLSYEGRVSFTENNLEDIFDSADRPLEGRRWWLGA 1431
GRPLG SGL W+KI LAN+Y GGVDKLSY+GR++FTEN+LEDIFDSA+RPLEG+RWWLGA
Sbjct: 600 GRPLGDSGLCWLKIHLANLYAGGVDKLSYDGRIAFTENHLEDIFDSANRPLEGKRWWLGA 659
Query: 1432 EDPFQCLATCVSLAEALRSPNPETVISHMPVHQDGSCNGLQHYAALGRDKLGAAAVNLTA 1611
EDPFQCLA C+ L EALRS +PE +ISH+PVHQDGSCNGLQHYAALGRDKLGA AVNL +
Sbjct: 660 EDPFQCLAVCMDLTEALRSSSPEAMISHIPVHQDGSCNGLQHYAALGRDKLGAIAVNLVS 719
Query: 1612 GDKPADVYSGIAARVLEIMKTDAAGDPAIDPNAKHARLLIDQVDRKLVKQTVMTSVYGVT 1791
G+KPADVYSGIA RV+EIM+ DA DPA+DP+A ARLL+DQVDRKLVKQTVMTSVYGVT
Sbjct: 720 GEKPADVYSGIATRVVEIMRRDAQKDPALDPDAARARLLVDQVDRKLVKQTVMTSVYGVT 779
Query: 1792 YIGARDQIKRRLKERHAIDDDSEMFACACYAAKTTLTALGEMFEAARSIMGWLGDCAKII 1971
Y+GAR+QIKRRLKER I DDSE+FA +CYAAK TLTALGEMFEAARSIM WLGDCAK+I
Sbjct: 780 YVGAREQIKRRLKERGVIGDDSELFAASCYAAKVTLTALGEMFEAARSIMNWLGDCAKVI 839
Query: 1972 AMENQPVRWTTPLGLPVVQPYRKLGKQVIKTSLQNLTLQRETDKVMTKRQRSAFPPNFVH 2151
A EN+PVRW TPLGLPVVQPYRKLG+ +IKTSLQ LTLQRETDKVM KRQR+AFPPNFVH
Sbjct: 840 ACENEPVRWMTPLGLPVVQPYRKLGRHLIKTSLQVLTLQRETDKVMVKRQRTAFPPNFVH 899
Query: 2152 SLDSSHMMMTATACSKAGLYFAGVHDSYWTHACDVDTMNQILREKFVELYEQPIXXXXXX 2331
SLD SHMMMTA AC+K GLYFAGVHDSYWTHACDVDTMN+ILREKFVELY+ PI
Sbjct: 900 SLDGSHMMMTAVACNKQGLYFAGVHDSYWTHACDVDTMNKILREKFVELYDAPILENLLD 959
Query: 2332 XXXXXXPKLKFPSLPERGDFDLKEVLGSTYFFN 2430
P L+FP LPERGDFDL +VL S YFFN
Sbjct: 960 SFETSFPTLRFPPLPERGDFDLNDVLQSPYFFN 992