BLASTX nr result
ID: Mentha28_contig00008326
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Mentha28_contig00008326
(1660 letters)
Database: ./nr
38,876,450 sequences; 13,856,398,315 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AHL27585.1| RNA-dependent RNA polymerase 2 [Salvia miltiorrhiza] 501 0.0
gb|EYU28878.1| hypothetical protein MIMGU_mgv1a000505mg [Mimulus... 473 0.0
gb|AHL27584.1| RNA-dependent RNA polymerase 1 [Salvia miltiorrhiza] 437 0.0
gb|EPS70289.1| hypothetical protein M569_04468, partial [Genlise... 411 0.0
ref|XP_006469265.1| PREDICTED: RNA-dependent RNA polymerase 1-li... 396 0.0
emb|CAA09697.1| RNA-directed RNA polymerase [Nicotiana tabacum] 395 0.0
gb|ABV24845.1| RNA-dependent RNA polymerase [Nicotiana glutinosa... 389 0.0
ref|XP_006366109.1| PREDICTED: RNA-dependent RNA polymerase 1-li... 397 0.0
ref|NP_001234319.1| RNA-directed RNA polymerase [Solanum lycoper... 396 0.0
gb|ABO93006.1| putative RNA-dependent RNA-polymerase [Solanum tu... 393 0.0
gb|ABI34311.1| RNA dependent RNA polymerase family protein [Sola... 392 0.0
ref|XP_002311536.1| RNA-directed RNA Polymerase family protein [... 389 0.0
ref|XP_007045552.1| RNA-dependent RNA polymerase 1 isoform 1 [Th... 390 0.0
gb|ABO92977.1| putative RNA-dependent RNA-polymerase [Solanum tu... 394 0.0
gb|AAT38699.2| RNA dependent RNA polymerase family protein [Sola... 394 0.0
ref|XP_006366108.1| PREDICTED: RNA-dependent RNA polymerase 1-li... 390 0.0
gb|EXB53859.1| RNA-dependent RNA polymerase 1 [Morus notabilis] 395 0.0
gb|AAT39936.2| RNA-directed RNA polymerase-like, putative [Solan... 390 0.0
gb|ABO92978.1| putative RNA-dependent RNA-polymerase [Solanum tu... 390 0.0
gb|ABQ45352.1| RNA-dependent RNA polymerase [Gossypium hirsutum] 383 0.0
>gb|AHL27585.1| RNA-dependent RNA polymerase 2 [Salvia miltiorrhiza]
Length = 1101
Score = 501 bits (1291), Expect(2) = 0.0
Identities = 244/298 (81%), Positives = 267/298 (89%)
Frame = +1
Query: 1 PGMKLDATFFRCVNPQRVDIKYIEHALEKLYYAKECCYDPVSWLLEQYRKYRTSEEQPKP 180
PGMKLD FF+C+NP+R I+YIEHAL+KLYY KECCYDPV+WL EQYRKY+T EE PKP
Sbjct: 289 PGMKLDTEFFQCLNPRRYAIRYIEHALDKLYYIKECCYDPVAWLREQYRKYQTFEELPKP 348
Query: 181 PTICLDDGLVYVHRVQVTPTRVYFSGPEVNMSNRVLRHFSNYIDNFLRVSFIDEEWNKMF 360
PTI LDDGLVY+HRVQVTPTRVYF+GPEVNMSNRVLR FS +IDNFLRVSFIDEEW+KM+
Sbjct: 349 PTISLDDGLVYIHRVQVTPTRVYFAGPEVNMSNRVLRQFSAHIDNFLRVSFIDEEWDKMY 408
Query: 361 STDLSPRVAAGIGNGRTKLYERVLSTLRNGIRIGDKRFDFLAFSSSQLRENSLWMFAPVG 540
STDLSP+VA G+GNGRTKLYERVLSTLRNGI IG+KRF FLAFSSSQLRENSLWMFAPV
Sbjct: 409 STDLSPKVATGVGNGRTKLYERVLSTLRNGITIGEKRFQFLAFSSSQLRENSLWMFAPVD 468
Query: 541 NLDADYIRQWMGDFSSIRNVAKYAARLGQSFGSSTETLSVSHNEVEHIPDVKVVRDGKTY 720
L AD IR+WMGDFSSIRNVAKYAARLGQSF SSTETL V+ EVE IPDV+VVRDG TY
Sbjct: 469 GLTADDIRRWMGDFSSIRNVAKYAARLGQSFSSSTETLKVAQYEVERIPDVEVVRDGTTY 528
Query: 721 TFSDGIGKISSGFAIRVASKCGIKGSVPSTFQIRYGGYKGVVAIDPTSTKKLSLRRSM 894
FSDGIGKISS FA RVA+KCGI+ VPS FQIRYGGYKGVVA+DPTS+ KLSLR+SM
Sbjct: 529 IFSDGIGKISSDFARRVATKCGIRDGVPSAFQIRYGGYKGVVAVDPTSSMKLSLRKSM 586
Score = 402 bits (1032), Expect(2) = 0.0
Identities = 195/240 (81%), Positives = 213/240 (88%)
Frame = +3
Query: 939 DRVFEKKQREAVAQLDAILVDPLKAQDALELMSPGENTNILKEMLNCGYKPNEEPFLSRM 1118
D VFEKKQREAVAQLD ILVDPLKAQDAL+LMSPGENTNILKEML CGYKP+EEPFLS M
Sbjct: 624 DHVFEKKQREAVAQLDDILVDPLKAQDALDLMSPGENTNILKEMLKCGYKPDEEPFLSMM 683
Query: 1119 LRAFRSSKLLDLRVKARIFIPRARQMMGCMDETGTLEYGQVFVQVSGSERRGLYDQTSTG 1298
L+ FR +KLLDLRVKARIFIP+ARQMMGCMDETGTLEYGQVFVQ SG+ GLY+ G
Sbjct: 684 LQTFRLAKLLDLRVKARIFIPQARQMMGCMDETGTLEYGQVFVQFSGTGSSGLYE----G 739
Query: 1299 SRNIITRNVAVAKNPCLHPGDVRVLTAVDVPALRHMVDCVVFPQKGMRPHPNECSGSDLD 1478
++ +T VAVAKNPCLHPGDVRVL AVDVP L+HMVDCVVFP+KG RPHPNECSGSDLD
Sbjct: 740 TKYTVTGKVAVAKNPCLHPGDVRVLRAVDVPELQHMVDCVVFPRKGRRPHPNECSGSDLD 799
Query: 1479 GDIYFVCWDPELIPPDQVPPICYDPAPNTELDHEVTVEEIEEYFTNYIVNDSLGIISNAH 1658
GD YFVCWDPELIPP+Q P+ Y+PAPNT LDH VT+EE+EEYFTNYIVNDSLGII+NAH
Sbjct: 800 GDRYFVCWDPELIPPNQESPMTYNPAPNTLLDHNVTIEEVEEYFTNYIVNDSLGIIANAH 859
>gb|EYU28878.1| hypothetical protein MIMGU_mgv1a000505mg [Mimulus guttatus]
Length = 1110
Score = 473 bits (1216), Expect(2) = 0.0
Identities = 230/298 (77%), Positives = 259/298 (86%)
Frame = +1
Query: 1 PGMKLDATFFRCVNPQRVDIKYIEHALEKLYYAKECCYDPVSWLLEQYRKYRTSEEQPKP 180
PG KLD +FF VNP + DI+YIEHALEKLYY KECCY+P +WL EQY +YRTS+E PK
Sbjct: 286 PGPKLDRSFFDLVNPAKHDIRYIEHALEKLYYLKECCYNPAAWLKEQYERYRTSKEHPKS 345
Query: 181 PTICLDDGLVYVHRVQVTPTRVYFSGPEVNMSNRVLRHFSNYIDNFLRVSFIDEEWNKMF 360
P ICLDDGLVYVHRVQVTPTRVYFSGPEVN+SNRVLRH+ +YIDNFLRVSF+DEEW+KM+
Sbjct: 346 PAICLDDGLVYVHRVQVTPTRVYFSGPEVNVSNRVLRHYRDYIDNFLRVSFVDEEWDKMY 405
Query: 361 STDLSPRVAAGIGNGRTKLYERVLSTLRNGIRIGDKRFDFLAFSSSQLRENSLWMFAPVG 540
STDLSPRVAAG N RTKLYERV+S LR+G+RIGD++FDFLAFSSSQLR+NSLWMFAP
Sbjct: 406 STDLSPRVAAGDENKRTKLYERVISILRDGVRIGDRKFDFLAFSSSQLRDNSLWMFAPTD 465
Query: 541 NLDADYIRQWMGDFSSIRNVAKYAARLGQSFGSSTETLSVSHNEVEHIPDVKVVRDGKTY 720
L+AD IR+WMGDFSSIRNVAKYAARLGQSFGSSTETLSVS E+E I DVK +G Y
Sbjct: 466 GLNADGIREWMGDFSSIRNVAKYAARLGQSFGSSTETLSVSKREIEEIQDVK---NGTEY 522
Query: 721 TFSDGIGKISSGFAIRVASKCGIKGSVPSTFQIRYGGYKGVVAIDPTSTKKLSLRRSM 894
TFSDGIGKIS FA +VA+KCG++ S PS FQIRYGGYKGVVA+DP+S KKLSLR SM
Sbjct: 523 TFSDGIGKISEDFARQVAAKCGVRSSTPSAFQIRYGGYKGVVAVDPSSKKKLSLRPSM 580
Score = 379 bits (974), Expect(2) = 0.0
Identities = 180/245 (73%), Positives = 212/245 (86%), Gaps = 5/245 (2%)
Frame = +3
Query: 939 DRVFEKKQREAVAQLDAILVDPLKAQDALELMSPGENTNILKEMLNCGYKPNEEPFLSRM 1118
D VFEK+QREAVAQLD +L+DP++AQ+AL+LMSPGENT+ILKEML CGY+P+ EPFLS M
Sbjct: 618 DHVFEKRQREAVAQLDDVLIDPMRAQEALDLMSPGENTHILKEMLKCGYEPDGEPFLSMM 677
Query: 1119 LRAFRSSKLLDLRVKARIFIPRARQMMGCMDETGTLEYGQVFVQVSGSERRGLYDQT--- 1289
L+ FR+SKLLDLRVKAR+FIP+ARQMMGC+DETG L+YGQVFV+ SG+ +RGL+D +
Sbjct: 678 LQTFRASKLLDLRVKARVFIPKARQMMGCLDETGILKYGQVFVRYSGAVKRGLFDDSYDN 737
Query: 1290 STGSRNI--ITRNVAVAKNPCLHPGDVRVLTAVDVPALRHMVDCVVFPQKGMRPHPNECS 1463
ST + + V VAKNPCLHPGDVRVLTAVDVP LRHMVDCVVFP+ G RPHPNECS
Sbjct: 738 STANERFDPVRGKVVVAKNPCLHPGDVRVLTAVDVPELRHMVDCVVFPKNGKRPHPNECS 797
Query: 1464 GSDLDGDIYFVCWDPELIPPDQVPPICYDPAPNTELDHEVTVEEIEEYFTNYIVNDSLGI 1643
GSDLDGDIYFVCWD +LIP QV P+ Y+PAP T LDH+VT+EE+E+YFTNYIVNDSLGI
Sbjct: 798 GSDLDGDIYFVCWDSDLIPTKQVEPMDYNPAPTTRLDHDVTIEEVEDYFTNYIVNDSLGI 857
Query: 1644 ISNAH 1658
I+NAH
Sbjct: 858 IANAH 862
>gb|AHL27584.1| RNA-dependent RNA polymerase 1 [Salvia miltiorrhiza]
Length = 1118
Score = 437 bits (1123), Expect(2) = 0.0
Identities = 216/298 (72%), Positives = 253/298 (84%)
Frame = +1
Query: 1 PGMKLDATFFRCVNPQRVDIKYIEHALEKLYYAKECCYDPVSWLLEQYRKYRTSEEQPKP 180
PG KLD F+R +NP+ DI Y+E LEKLYY KECCYDP SWL+EQ++ Y T ++ PKP
Sbjct: 225 PGPKLDDNFYRLLNPKSFDITYLEQLLEKLYYLKECCYDPHSWLIEQHQNYCTFKK-PKP 283
Query: 181 PTICLDDGLVYVHRVQVTPTRVYFSGPEVNMSNRVLRHFSNYIDNFLRVSFIDEEWNKMF 360
P + +D LV++HRVQVTPT+VYF GPE N+SNRVLR+F ++IDNFLRVSF++E+W+KM+
Sbjct: 284 PAV--NDDLVHIHRVQVTPTKVYFHGPEANVSNRVLRNFHDHIDNFLRVSFVEEDWSKMY 341
Query: 361 STDLSPRVAAGIGNGRTKLYERVLSTLRNGIRIGDKRFDFLAFSSSQLRENSLWMFAPVG 540
++DLSPR A G N RTKLYERVLSTLRNGI IG K+F+FLAFSSSQLRENSLWMFAPV
Sbjct: 342 ASDLSPRGAGGDENTRTKLYERVLSTLRNGITIGSKKFEFLAFSSSQLRENSLWMFAPVD 401
Query: 541 NLDADYIRQWMGDFSSIRNVAKYAARLGQSFGSSTETLSVSHNEVEHIPDVKVVRDGKTY 720
L+AD IR+WMGDFSSIRNVAKYAARLGQSFGSSTETLSV+ NEVE IPDV+VV +G TY
Sbjct: 402 GLNADDIRRWMGDFSSIRNVAKYAARLGQSFGSSTETLSVAQNEVEKIPDVEVVTNGTTY 461
Query: 721 TFSDGIGKISSGFAIRVASKCGIKGSVPSTFQIRYGGYKGVVAIDPTSTKKLSLRRSM 894
FSDGIGKIS FA RVA KCG+K ++PS FQIRYGGYKGVVAIDPTS+ K+SLR SM
Sbjct: 462 IFSDGIGKISVDFARRVAIKCGLKSNIPSAFQIRYGGYKGVVAIDPTSSVKMSLRPSM 519
Score = 375 bits (962), Expect(2) = 0.0
Identities = 180/247 (72%), Positives = 209/247 (84%), Gaps = 7/247 (2%)
Frame = +3
Query: 939 DRVFEKKQREAVAQLDAILVDPLKAQDALELMSPGENTNILKEMLNCGYKPNEEPFLSRM 1118
D VFEKKQREAVAQL+ ILVDPLKA +AL+LMS GENT ILKEML CGYKP+EEPFL+ M
Sbjct: 557 DHVFEKKQREAVAQLNDILVDPLKALEALDLMSLGENTYILKEMLKCGYKPDEEPFLAMM 616
Query: 1119 LRAFRSSKLLDLRVKARIFIPRARQMMGCMDETGTLEYGQVFVQVSGSERRGLYDQ---- 1286
L+ FRSS+LLDLR K+RIFIP+AR MMGC+DETGTLEYGQVFVQ SG+ +R Y++
Sbjct: 617 LQTFRSSQLLDLRTKSRIFIPQARNMMGCLDETGTLEYGQVFVQFSGAGQRRFYEESIKF 676
Query: 1287 ---TSTGSRNIITRNVAVAKNPCLHPGDVRVLTAVDVPALRHMVDCVVFPQKGMRPHPNE 1457
TST I+ VAVAKNPCLHPGD+RVL A+DVPAL HMV+C+VFPQKG RPHPNE
Sbjct: 677 DEYTSTDHNYIVKGKVAVAKNPCLHPGDLRVLEAIDVPALHHMVNCIVFPQKGTRPHPNE 736
Query: 1458 CSGSDLDGDIYFVCWDPELIPPDQVPPICYDPAPNTELDHEVTVEEIEEYFTNYIVNDSL 1637
CSGSDLDGDIY VCWDP+LIPP Q P+ Y+PAP T LDHEVT++E++EYFTNYI+N+SL
Sbjct: 737 CSGSDLDGDIYIVCWDPDLIPPKQFDPMDYNPAPATRLDHEVTIQEVQEYFTNYILNESL 796
Query: 1638 GIISNAH 1658
GII+NAH
Sbjct: 797 GIIANAH 803
>gb|EPS70289.1| hypothetical protein M569_04468, partial [Genlisea aurea]
Length = 1095
Score = 411 bits (1056), Expect(2) = 0.0
Identities = 204/298 (68%), Positives = 240/298 (80%)
Frame = +1
Query: 1 PGMKLDATFFRCVNPQRVDIKYIEHALEKLYYAKECCYDPVSWLLEQYRKYRTSEEQPKP 180
PG +LDA F+R VNPQ VDI+YIEHALEK++Y KECCYDPV WL QYR+Y+TS+ P
Sbjct: 285 PGPELDANFYRMVNPQLVDIRYIEHALEKIFYLKECCYDPVKWLESQYRRYQTSK--PSS 342
Query: 181 PTICLDDGLVYVHRVQVTPTRVYFSGPEVNMSNRVLRHFSNYIDNFLRVSFIDEEWNKMF 360
PTI L+ GLVYV RVQ+TP+RVYF+GPE+N+SNRVLR + + ID+FLRVSF+DE+W+K+F
Sbjct: 343 PTISLEGGLVYVRRVQITPSRVYFTGPEINVSNRVLRQYKDRIDDFLRVSFVDEDWDKLF 402
Query: 361 STDLSPRVAAGIGNGRTKLYERVLSTLRNGIRIGDKRFDFLAFSSSQLRENSLWMFAPVG 540
S LS + G +T++YER+LS LR GIRIGDKRFDFLAFSSSQLRENSLWMFAP
Sbjct: 403 SLTLSSKTEIG----KTRIYERILSVLREGIRIGDKRFDFLAFSSSQLRENSLWMFAPSN 458
Query: 541 NLDADYIRQWMGDFSSIRNVAKYAARLGQSFGSSTETLSVSHNEVEHIPDVKVVRDGKTY 720
+ AD IR+WMGDF SIRNVAKYAARLGQSFGSSTETL+V +E IPD+ KTY
Sbjct: 459 GVTADDIRKWMGDFRSIRNVAKYAARLGQSFGSSTETLTVQRDEYLLIPDITRQTGDKTY 518
Query: 721 TFSDGIGKISSGFAIRVASKCGIKGSVPSTFQIRYGGYKGVVAIDPTSTKKLSLRRSM 894
TFSDGIGKIS+ FA RVA+KC VPS FQIRYGG+KGVVA+DP+S KLSLR SM
Sbjct: 519 TFSDGIGKISADFARRVAAKCRFTHRVPSAFQIRYGGFKGVVAVDPSSNMKLSLRPSM 576
Score = 367 bits (943), Expect(2) = 0.0
Identities = 174/245 (71%), Positives = 211/245 (86%), Gaps = 5/245 (2%)
Frame = +3
Query: 939 DRVFEKKQREAVAQLDAILVDPLKAQDALELMSPGENTNILKEMLNCGYKPNEEPFLSRM 1118
DRVF KKQREAVAQLD ILVDPL+AQ+ L+LM+PGEN++ILKEML CGYKP+EEPFLS M
Sbjct: 614 DRVFLKKQREAVAQLDEILVDPLRAQEVLDLMAPGENSHILKEMLKCGYKPDEEPFLSMM 673
Query: 1119 LRAFRSSKLLDLRVKARIFIPRARQMMGCMDETGTLEYGQVFVQVSGS-ERRGLYDQTST 1295
LRAFRSSKLLDLR K+RIF+P ARQ+MGC+DETGTLEYG+VFVQ+SGS +R+ +D +
Sbjct: 674 LRAFRSSKLLDLRTKSRIFVPEARQLMGCLDETGTLEYGEVFVQISGSRQRQFFFDGPAV 733
Query: 1296 GSRN----IITRNVAVAKNPCLHPGDVRVLTAVDVPALRHMVDCVVFPQKGMRPHPNECS 1463
G+ N +++ V VAKNPCLHPGD+RV+ AVDVP L HMVDC+VFPQKG RP P+ECS
Sbjct: 734 GTVNDYNSVVSGTVFVAKNPCLHPGDIRVVKAVDVPILHHMVDCLVFPQKGHRPLPDECS 793
Query: 1464 GSDLDGDIYFVCWDPELIPPDQVPPICYDPAPNTELDHEVTVEEIEEYFTNYIVNDSLGI 1643
GSDLDGDIYFVCWD +L P Q PP+ YDPAP T LDH+VT++E+++YFT+YIVND+LG+
Sbjct: 794 GSDLDGDIYFVCWDTDLFPLQQDPPMDYDPAPTTRLDHDVTMQEVQKYFTDYIVNDTLGV 853
Query: 1644 ISNAH 1658
I+NAH
Sbjct: 854 IANAH 858
>ref|XP_006469265.1| PREDICTED: RNA-dependent RNA polymerase 1-like [Citrus sinensis]
Length = 1132
Score = 396 bits (1018), Expect(2) = 0.0
Identities = 200/299 (66%), Positives = 235/299 (78%), Gaps = 2/299 (0%)
Frame = +1
Query: 4 GMKLDATFFRCVNPQR--VDIKYIEHALEKLYYAKECCYDPVSWLLEQYRKYRTSEEQPK 177
G LD+ F+R V+P R V I IEHAL+KLY+ KECCY+P WL +QYRKY TS +P
Sbjct: 299 GPLLDSNFYRLVDPYRAPVSISCIEHALDKLYHLKECCYEPSRWLTDQYRKYMTSRSKPS 358
Query: 178 PPTICLDDGLVYVHRVQVTPTRVYFSGPEVNMSNRVLRHFSNYIDNFLRVSFIDEEWNKM 357
P I LDDGLVYVHRVQVTP+RVYF GPE+N+SNRVLRHF IDNFLR+SFIDE+ +K+
Sbjct: 359 SPAISLDDGLVYVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDEDLDKI 418
Query: 358 FSTDLSPRVAAGIGNGRTKLYERVLSTLRNGIRIGDKRFDFLAFSSSQLRENSLWMFAPV 537
STDLSPR ++ RT++Y R+LSTLRNGI IGD++F+FLAFSSSQLRE+S WMFA
Sbjct: 419 HSTDLSPRGSSATDITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSAWMFASR 478
Query: 538 GNLDADYIRQWMGDFSSIRNVAKYAARLGQSFGSSTETLSVSHNEVEHIPDVKVVRDGKT 717
L A IR+WMG+F IRNVAKYAARLGQSF SS ETLSV +E+E IPDVK+
Sbjct: 479 YGLTAAEIREWMGNFREIRNVAKYAARLGQSFSSSKETLSVHMDEIEIIPDVKIEIGKTK 538
Query: 718 YTFSDGIGKISSGFAIRVASKCGIKGSVPSTFQIRYGGYKGVVAIDPTSTKKLSLRRSM 894
Y FSDGIGK+S+ FA +VASKCG+K + PS FQIRYGGYKGVVA DPTS+KKLSLR SM
Sbjct: 539 YVFSDGIGKVSAEFARKVASKCGLKDNPPSAFQIRYGGYKGVVAADPTSSKKLSLRDSM 597
Score = 373 bits (957), Expect(2) = 0.0
Identities = 182/246 (73%), Positives = 205/246 (83%), Gaps = 6/246 (2%)
Frame = +3
Query: 939 DRVFEKKQREAVAQLDAILVDPLKAQDALELMSPGENTNILKEMLNCGYKPNEEPFLSRM 1118
D +FEKKQREAV QLDAIL DPLKAQ+ALELMSPGENTNILKE+L CGYKP+ EPFLS M
Sbjct: 635 DEIFEKKQREAVRQLDAILTDPLKAQEALELMSPGENTNILKELLICGYKPDAEPFLSMM 694
Query: 1119 LRAFRSSKLLDLRVKARIFIPRARQMMGCMDETGTLEYGQVFVQVSGSERRGLYDQTSTG 1298
L+ FR+SKLL+LR K RIFIP R MMGC+DET TL YGQVFVQ+SG+ R L+ ++S
Sbjct: 695 LQTFRASKLLELRTKTRIFIPNGRSMMGCLDETRTLNYGQVFVQISGAGYRQLHGESSLF 754
Query: 1299 S------RNIITRNVAVAKNPCLHPGDVRVLTAVDVPALRHMVDCVVFPQKGMRPHPNEC 1460
S R I+ V VAKNPCLHPGDVRVL AV+VPAL HMVDCVVFPQKGMRPHPNEC
Sbjct: 755 SSSRSRQRFIVQGLVVVAKNPCLHPGDVRVLKAVNVPALHHMVDCVVFPQKGMRPHPNEC 814
Query: 1461 SGSDLDGDIYFVCWDPELIPPDQVPPICYDPAPNTELDHEVTVEEIEEYFTNYIVNDSLG 1640
SGSDLDGDIYFVCWD ELIPP Q PP+ Y PA + +LDH+V +E++EEYFTNYIVNDSLG
Sbjct: 815 SGSDLDGDIYFVCWDDELIPPQQDPPMDYTPAQSMQLDHDVQIEDVEEYFTNYIVNDSLG 874
Query: 1641 IISNAH 1658
II+NAH
Sbjct: 875 IIANAH 880
>emb|CAA09697.1| RNA-directed RNA polymerase [Nicotiana tabacum]
Length = 1116
Score = 395 bits (1014), Expect(2) = 0.0
Identities = 202/298 (67%), Positives = 232/298 (77%)
Frame = +1
Query: 1 PGMKLDATFFRCVNPQRVDIKYIEHALEKLYYAKECCYDPVSWLLEQYRKYRTSEEQPKP 180
PG+ L+ FF+ V+P+R +I IEHALEKLYY KECCYDPV WL EQY +Y + PK
Sbjct: 286 PGLALNFNFFQLVDPRRRNIACIEHALEKLYYLKECCYDPVRWLTEQYDEYLKGRQLPKS 345
Query: 181 PTICLDDGLVYVHRVQVTPTRVYFSGPEVNMSNRVLRHFSNYIDNFLRVSFIDEEWNKMF 360
P I LDDGLVYV RV VTP +VYF GPEVN+SNRVLR++S I+NFLRVSF+DEEW K+
Sbjct: 346 PPITLDDGLVYVRRVVVTPCKVYFCGPEVNVSNRVLRNYSEDINNFLRVSFVDEEWEKIH 405
Query: 361 STDLSPRVAAGIGNGRTKLYERVLSTLRNGIRIGDKRFDFLAFSSSQLRENSLWMFAPVG 540
STDL PR + G G RT +YER+LSTLRNG IGDKRF+FLAFSSSQLR+NS+WMFA
Sbjct: 406 STDLLPRASTGNGT-RTDIYERILSTLRNGFIIGDKRFEFLAFSSSQLRDNSVWMFASRP 464
Query: 541 NLDADYIRQWMGDFSSIRNVAKYAARLGQSFGSSTETLSVSHNEVEHIPDVKVVRDGKTY 720
L A+ IR WMGDF IRNVAKYAARLGQSFGSS ETLSV +EVE IPDV G Y
Sbjct: 465 GLTANDIRTWMGDFRQIRNVAKYAARLGQSFGSSRETLSVGRHEVEVIPDVACSLHGTNY 524
Query: 721 TFSDGIGKISSGFAIRVASKCGIKGSVPSTFQIRYGGYKGVVAIDPTSTKKLSLRRSM 894
FSDGIGKIS+ FA RV KCG++ PS+FQIRYGGYKGVVA+DP S+ KLSLR+SM
Sbjct: 525 IFSDGIGKISADFAHRVTIKCGLQ-YTPSSFQIRYGGYKGVVAVDPYSSMKLSLRKSM 581
Score = 373 bits (958), Expect(2) = 0.0
Identities = 182/247 (73%), Positives = 206/247 (83%), Gaps = 7/247 (2%)
Frame = +3
Query: 939 DRVFEKKQREAVAQLDAILVDPLKAQDALELMSPGENTNILKEMLNCGYKPNEEPFLSRM 1118
D V E+KQ EAV QLDAIL D LKAQ+ALELMSPGENTNILKEMLNCGY P+ EPFLS M
Sbjct: 619 DDVLEQKQNEAVDQLDAILHDSLKAQEALELMSPGENTNILKEMLNCGYMPDAEPFLSMM 678
Query: 1119 LRAFRSSKLLDLRVKARIFIPRARQMMGCMDETGTLEYGQVFVQVSGSERRGLYDQT--- 1289
L+ FR+SKLLDLR + RIFIP R MMGC+DE+ TLEYGQVFVQ SG+ RR ++++
Sbjct: 679 LQTFRASKLLDLRTRTRIFIPNGRTMMGCLDESRTLEYGQVFVQFSGAGRRQFFEESHPF 738
Query: 1290 -STGSRN---IITRNVAVAKNPCLHPGDVRVLTAVDVPALRHMVDCVVFPQKGMRPHPNE 1457
+GS N I+ NV VAKNPCLHPGD+RVL AVDVPAL HMVDCVVFPQKG RPHPNE
Sbjct: 739 NDSGSANCDFILKGNVVVAKNPCLHPGDIRVLRAVDVPALHHMVDCVVFPQKGKRPHPNE 798
Query: 1458 CSGSDLDGDIYFVCWDPELIPPDQVPPICYDPAPNTELDHEVTVEEIEEYFTNYIVNDSL 1637
CSGSDLDGDIYFVCWDP+LIPP QV + Y PAP T+LDH+VT+EE+EEYFTNYI+NDSL
Sbjct: 799 CSGSDLDGDIYFVCWDPDLIPPRQVQSMDYTPAPTTQLDHDVTIEEVEEYFTNYIINDSL 858
Query: 1638 GIISNAH 1658
GII+NAH
Sbjct: 859 GIIANAH 865
>gb|ABV24845.1| RNA-dependent RNA polymerase [Nicotiana glutinosa]
gi|209420668|gb|ACI46982.1| RNA-dependent RNA polymerase
[Nicotiana glutinosa]
Length = 1117
Score = 389 bits (1000), Expect(2) = 0.0
Identities = 203/299 (67%), Positives = 231/299 (77%), Gaps = 1/299 (0%)
Frame = +1
Query: 1 PGMKLDATFFRCVNPQRVDIKYIEHALEKLYYAKECCYDPVSWLLEQYRKYRTSEEQPKP 180
PG+ L+ FF+ V+P+R +I IEHALEKLYY KECCYDPV WL EQY +Y + PK
Sbjct: 287 PGLALNFNFFQLVDPRRRNIACIEHALEKLYYLKECCYDPVRWLTEQYDEYLKRRQLPKS 346
Query: 181 PTICLDDGLVYVHRVQVTPTRVYFSGPEVNMSNRVLRHFSNYIDNFLRVSFIDEEWNKMF 360
P+I LDDGLVYV RV VTP +VYF GPEVN+SNRVLR++S IDNFLRVSF+DEEW K+
Sbjct: 347 PSITLDDGLVYVRRVLVTPCKVYFCGPEVNVSNRVLRNYSEDIDNFLRVSFVDEEWEKIH 406
Query: 361 STDLSPRVAAGIGNG-RTKLYERVLSTLRNGIRIGDKRFDFLAFSSSQLRENSLWMFAPV 537
STDL PR A GNG RT +Y R+LSTLRNG IGDK+F+FLAFSSSQLR+NS+WMFA
Sbjct: 407 STDLLPR--ASTGNGVRTDIYLRILSTLRNGFVIGDKKFEFLAFSSSQLRDNSVWMFASR 464
Query: 538 GNLDADYIRQWMGDFSSIRNVAKYAARLGQSFGSSTETLSVSHNEVEHIPDVKVVRDGKT 717
L A+ IR WMG F IRNVAKYAARLGQSFGSS ETLSV +EVE IPDV G
Sbjct: 465 PGLTANDIRTWMGGFQQIRNVAKYAARLGQSFGSSRETLSVGRHEVEVIPDVVCSLHGTN 524
Query: 718 YTFSDGIGKISSGFAIRVASKCGIKGSVPSTFQIRYGGYKGVVAIDPTSTKKLSLRRSM 894
Y FSDGIGKIS+ FA RVA KCG++ PS FQIRYGGYKGVVA+DP S+ KLSLR SM
Sbjct: 525 YIFSDGIGKISADFARRVAVKCGLQ-YTPSCFQIRYGGYKGVVAVDPYSSMKLSLRNSM 582
Score = 378 bits (970), Expect(2) = 0.0
Identities = 183/247 (74%), Positives = 209/247 (84%), Gaps = 7/247 (2%)
Frame = +3
Query: 939 DRVFEKKQREAVAQLDAILVDPLKAQDALELMSPGENTNILKEMLNCGYKPNEEPFLSRM 1118
D VFE+KQ EAV QLDAIL D LKAQ+ALELMSPGENTNILKEMLNCGY P+ EPFLS M
Sbjct: 620 DDVFEQKQNEAVDQLDAILHDTLKAQEALELMSPGENTNILKEMLNCGYMPDAEPFLSMM 679
Query: 1119 LRAFRSSKLLDLRVKARIFIPRARQMMGCMDETGTLEYGQVFVQVSGSERRGLYDQT--- 1289
L+ FR+SKLLDLR ++RIFIP R MMGC+DE+ TLEYGQVFVQ +G+ RR Y+++
Sbjct: 680 LQTFRASKLLDLRTRSRIFIPNGRTMMGCLDESRTLEYGQVFVQFTGTGRRQFYEESHPF 739
Query: 1290 -STGSRN---IITRNVAVAKNPCLHPGDVRVLTAVDVPALRHMVDCVVFPQKGMRPHPNE 1457
+GS N I+ NV VAKNPCLHPGD+RVL AVDVPAL HMVDCVVFPQKG RPHPNE
Sbjct: 740 NDSGSTNCDFILEGNVVVAKNPCLHPGDIRVLRAVDVPALHHMVDCVVFPQKGKRPHPNE 799
Query: 1458 CSGSDLDGDIYFVCWDPELIPPDQVPPICYDPAPNTELDHEVTVEEIEEYFTNYIVNDSL 1637
CSGSDLDGDIYFVCWDP+L+PP Q P+ Y PAP+T+LDH+VT+EE+EEYFTNYIVNDSL
Sbjct: 800 CSGSDLDGDIYFVCWDPDLVPPRQFQPMDYTPAPSTQLDHDVTIEEVEEYFTNYIVNDSL 859
Query: 1638 GIISNAH 1658
GII+NAH
Sbjct: 860 GIIANAH 866
>ref|XP_006366109.1| PREDICTED: RNA-dependent RNA polymerase 1-like isoform X1 [Solanum
tuberosum] gi|565401229|ref|XP_006366110.1| PREDICTED:
RNA-dependent RNA polymerase 1-like isoform X2 [Solanum
tuberosum]
Length = 1115
Score = 397 bits (1019), Expect(2) = 0.0
Identities = 206/299 (68%), Positives = 236/299 (78%), Gaps = 1/299 (0%)
Frame = +1
Query: 1 PGMKLDATFFRCVNPQRVDIKYIEHALEKLYYAKECCYDPVSWLLEQYRKYRTSEEQPKP 180
PG L+ FFR V+PQR ++ IE ALEKLYY KECCYDPV WL EQY Y + PK
Sbjct: 286 PGPALNVYFFRLVDPQRRNVACIEQALEKLYYLKECCYDPVRWLTEQYDGYLKGRQPPKS 345
Query: 181 PTICLDDGLVYVHRVQVTPTRVYFSGPEVNMSNRVLRHFSNYIDNFLRVSFIDEEWNKMF 360
P+I LDDGLVYV RV VTP +VYF GPEVN+SNRVLR++S IDNFLRVSF+DEEW K++
Sbjct: 346 PSINLDDGLVYVRRVLVTPCKVYFCGPEVNVSNRVLRNYSEDIDNFLRVSFVDEEWEKLY 405
Query: 361 STDLSPRVAAGIGNG-RTKLYERVLSTLRNGIRIGDKRFDFLAFSSSQLRENSLWMFAPV 537
STDL P+ A GNG RT +YER+LSTLR G IGDK+F+FLAFSSSQLR+NS+WMFA
Sbjct: 406 STDLLPK--ASTGNGIRTNIYERILSTLRKGFVIGDKKFEFLAFSSSQLRDNSVWMFASR 463
Query: 538 GNLDADYIRQWMGDFSSIRNVAKYAARLGQSFGSSTETLSVSHNEVEHIPDVKVVRDGKT 717
L A IR WMGDFS I+NVAKYAARLGQSFGSSTETLSV +E+E IPDVKV G +
Sbjct: 464 PGLTAIDIRTWMGDFSQIKNVAKYAARLGQSFGSSTETLSVLRHEIEVIPDVKV--HGTS 521
Query: 718 YTFSDGIGKISSGFAIRVASKCGIKGSVPSTFQIRYGGYKGVVAIDPTSTKKLSLRRSM 894
Y FSDGIGKIS+ FA RVASKCG++ PS FQIRYGGYKGVVA+DP S+ KLSLR+SM
Sbjct: 522 YVFSDGIGKISADFARRVASKCGLQ-HTPSAFQIRYGGYKGVVAVDPYSSMKLSLRKSM 579
Score = 362 bits (928), Expect(2) = 0.0
Identities = 178/247 (72%), Positives = 200/247 (80%), Gaps = 7/247 (2%)
Frame = +3
Query: 939 DRVFEKKQREAVAQLDAILVDPLKAQDALELMSPGENTNILKEMLNCGYKPNEEPFLSRM 1118
D V E+KQ+EAV QLDAIL D LKAQ+ALELMSPGENTNILK MLNCGY P+ EPFLS M
Sbjct: 617 DDVLEQKQKEAVDQLDAILHDSLKAQEALELMSPGENTNILKAMLNCGYMPDAEPFLSMM 676
Query: 1119 LRAFRSSKLLDLRVKARIFIPRARQMMGCMDETGTLEYGQVFVQVSGSERRGLYDQT--- 1289
L+ FR+SKLLDLR K+RIFIP R MMGC+DE+ TLEYGQVFVQ +GS R +
Sbjct: 677 LQTFRASKLLDLRTKSRIFIPNGRLMMGCLDESRTLEYGQVFVQFTGSGHREFSEDLHPF 736
Query: 1290 ----STGSRNIITRNVAVAKNPCLHPGDVRVLTAVDVPALRHMVDCVVFPQKGMRPHPNE 1457
ST I+ NV VAKNPCLHPGD+RVL AVDVPAL HMVDCVVFPQKG RPHPNE
Sbjct: 737 NNSRSTNCNFILKGNVVVAKNPCLHPGDIRVLRAVDVPALHHMVDCVVFPQKGKRPHPNE 796
Query: 1458 CSGSDLDGDIYFVCWDPELIPPDQVPPICYDPAPNTELDHEVTVEEIEEYFTNYIVNDSL 1637
CSGSDLDGDIYFVCWD ++IPP QV + Y PAP+ +LDH+VT+EE+EEYFTNYIVNDSL
Sbjct: 797 CSGSDLDGDIYFVCWDQDMIPPRQVQAMEYPPAPSIQLDHDVTIEEVEEYFTNYIVNDSL 856
Query: 1638 GIISNAH 1658
GII+NAH
Sbjct: 857 GIIANAH 863
>ref|NP_001234319.1| RNA-directed RNA polymerase [Solanum lycopersicum]
gi|4038592|emb|CAA71421.1| RNA-directed RNA polymerase
[Solanum lycopersicum]
Length = 1114
Score = 396 bits (1018), Expect(2) = 0.0
Identities = 202/298 (67%), Positives = 234/298 (78%)
Frame = +1
Query: 1 PGMKLDATFFRCVNPQRVDIKYIEHALEKLYYAKECCYDPVSWLLEQYRKYRTSEEQPKP 180
PG L+ FFR V+P+R ++ IEHALEKLYY KECCYDPV WL EQY Y + PK
Sbjct: 286 PGPALNVYFFRLVDPRRRNVACIEHALEKLYYIKECCYDPVRWLTEQYDGYLKGRQPPKS 345
Query: 181 PTICLDDGLVYVHRVQVTPTRVYFSGPEVNMSNRVLRHFSNYIDNFLRVSFIDEEWNKMF 360
P+I LDDGLVYV RV VTP +VYF GPEVN+SNRVLR++S IDNFLRVSF+DEEW K++
Sbjct: 346 PSITLDDGLVYVRRVLVTPCKVYFCGPEVNVSNRVLRNYSEDIDNFLRVSFVDEEWEKLY 405
Query: 361 STDLSPRVAAGIGNGRTKLYERVLSTLRNGIRIGDKRFDFLAFSSSQLRENSLWMFAPVG 540
STDL P+ + G G RT +YER+LSTLR G IGDK+F+FLAFSSSQLR+NS+WMFA
Sbjct: 406 STDLLPKASTGSG-VRTNIYERILSTLRKGFVIGDKKFEFLAFSSSQLRDNSVWMFASRP 464
Query: 541 NLDADYIRQWMGDFSSIRNVAKYAARLGQSFGSSTETLSVSHNEVEHIPDVKVVRDGKTY 720
L A+ IR WMGDFS I+NVAKYAARLGQSFGSS ETLSV +E+E IPDVKV G +Y
Sbjct: 465 GLTANDIRAWMGDFSQIKNVAKYAARLGQSFGSSRETLSVLRHEIEVIPDVKV--HGTSY 522
Query: 721 TFSDGIGKISSGFAIRVASKCGIKGSVPSTFQIRYGGYKGVVAIDPTSTKKLSLRRSM 894
FSDGIGKIS FA RVASKCG++ PS FQIRYGGYKGVV +DP S+ KLSLR+SM
Sbjct: 523 VFSDGIGKISGDFAHRVASKCGLQ-YTPSAFQIRYGGYKGVVGVDPDSSMKLSLRKSM 579
Score = 361 bits (927), Expect(2) = 0.0
Identities = 177/247 (71%), Positives = 201/247 (81%), Gaps = 7/247 (2%)
Frame = +3
Query: 939 DRVFEKKQREAVAQLDAILVDPLKAQDALELMSPGENTNILKEMLNCGYKPNEEPFLSRM 1118
D V E+KQ+EAV QLDAIL D LKAQ+ALELMSPGENTNILK MLNCGYKP+ EPFLS M
Sbjct: 617 DEVLEQKQKEAVDQLDAILHDSLKAQEALELMSPGENTNILKAMLNCGYKPDAEPFLSMM 676
Query: 1119 LRAFRSSKLLDLRVKARIFIPRARQMMGCMDETGTLEYGQVFVQVSGSERRGLYDQT--- 1289
L+ FR+SKLLDLR ++RIFIP R MMGC+DE+ TLEYGQVFVQ +G+ D
Sbjct: 677 LQTFRASKLLDLRTRSRIFIPNGRTMMGCLDESRTLEYGQVFVQFTGAGHGEFSDDLHPF 736
Query: 1290 ----STGSRNIITRNVAVAKNPCLHPGDVRVLTAVDVPALRHMVDCVVFPQKGMRPHPNE 1457
ST S I+ NV VAKNPCLHPGD+RVL AV+V AL HMVDCVVFPQKG RPHPNE
Sbjct: 737 NNSRSTNSNFILKGNVVVAKNPCLHPGDIRVLKAVNVRALHHMVDCVVFPQKGKRPHPNE 796
Query: 1458 CSGSDLDGDIYFVCWDPELIPPDQVPPICYDPAPNTELDHEVTVEEIEEYFTNYIVNDSL 1637
CSGSDLDGDIYFVCWD ++IPP QV P+ Y PAP+ +LDH+VT+EE+EEYFTNYIVNDSL
Sbjct: 797 CSGSDLDGDIYFVCWDQDMIPPRQVQPMEYPPAPSIQLDHDVTIEEVEEYFTNYIVNDSL 856
Query: 1638 GIISNAH 1658
GII+NAH
Sbjct: 857 GIIANAH 863
>gb|ABO93006.1| putative RNA-dependent RNA-polymerase [Solanum tuberosum]
Length = 1065
Score = 393 bits (1009), Expect(2) = 0.0
Identities = 202/299 (67%), Positives = 236/299 (78%), Gaps = 1/299 (0%)
Frame = +1
Query: 1 PGMKLDATFFRCVNPQRVDIKYIEHALEKLYYAKECCYDPVSWLLEQYRKYRTSEEQPKP 180
PG L+ FFR V+PQR ++ IE ALEKLYY KECCYDPV WL EQY Y + PK
Sbjct: 285 PGPSLNVYFFRLVDPQRRNVACIEQALEKLYYLKECCYDPVRWLTEQYDGYLKGRQPPKS 344
Query: 181 PTICLDDGLVYVHRVQVTPTRVYFSGPEVNMSNRVLRHFSNYIDNFLRVSFIDEEWNKMF 360
P+I LDDGLVYV RV VTP +VYF GPEVN+SNRVLR++S IDNFLRVSF+DEEW K++
Sbjct: 345 PSITLDDGLVYVRRVLVTPCKVYFCGPEVNVSNRVLRNYSEDIDNFLRVSFVDEEWEKLY 404
Query: 361 STDLSPRVAAGIGNG-RTKLYERVLSTLRNGIRIGDKRFDFLAFSSSQLRENSLWMFAPV 537
ST+L P+ A GNG RT +YER+LST++ G IGDK+F+FLAFSSSQLR+NS+WMFA
Sbjct: 405 STELLPK--ASTGNGIRTNIYERILSTMQKGFVIGDKKFEFLAFSSSQLRDNSVWMFASR 462
Query: 538 GNLDADYIRQWMGDFSSIRNVAKYAARLGQSFGSSTETLSVSHNEVEHIPDVKVVRDGKT 717
L A+ IR WMGDFS I+NVAKYAARLGQSFGSS ETLSV +E+E IPDVKV G +
Sbjct: 463 PGLTANDIRTWMGDFSQIKNVAKYAARLGQSFGSSKETLSVLRHEIEVIPDVKV--HGTS 520
Query: 718 YTFSDGIGKISSGFAIRVASKCGIKGSVPSTFQIRYGGYKGVVAIDPTSTKKLSLRRSM 894
Y FSDGIGKIS+ FA RVASKCG++ PS FQIRYGGYKGVVA+DP S+ KLSLR+SM
Sbjct: 521 YVFSDGIGKISADFARRVASKCGLQ-YTPSAFQIRYGGYKGVVAVDPYSSMKLSLRKSM 578
Score = 365 bits (936), Expect(2) = 0.0
Identities = 178/247 (72%), Positives = 201/247 (81%), Gaps = 7/247 (2%)
Frame = +3
Query: 939 DRVFEKKQREAVAQLDAILVDPLKAQDALELMSPGENTNILKEMLNCGYKPNEEPFLSRM 1118
D + E+KQ+EAV QLDAIL D LKAQ+ALELMSPGENTNILK MLNCGY P+ EPFLS M
Sbjct: 616 DDILEQKQKEAVDQLDAILHDSLKAQEALELMSPGENTNILKAMLNCGYMPDAEPFLSMM 675
Query: 1119 LRAFRSSKLLDLRVKARIFIPRARQMMGCMDETGTLEYGQVFVQVSGSERRGLYDQT--- 1289
L+ FR+SKLLDLR K+RIFIP R MMGC+DE+ TLEYGQVFVQ +G+ R +
Sbjct: 676 LQTFRASKLLDLRTKSRIFIPNGRAMMGCLDESRTLEYGQVFVQFTGAGHREFSEDLHPF 735
Query: 1290 ----STGSRNIITRNVAVAKNPCLHPGDVRVLTAVDVPALRHMVDCVVFPQKGMRPHPNE 1457
ST I+ NV VAKNPCLHPGD+RVL AVDVPAL HMVDCVVFPQKG RPHPNE
Sbjct: 736 NNSRSTNCNFILKGNVVVAKNPCLHPGDIRVLRAVDVPALHHMVDCVVFPQKGKRPHPNE 795
Query: 1458 CSGSDLDGDIYFVCWDPELIPPDQVPPICYDPAPNTELDHEVTVEEIEEYFTNYIVNDSL 1637
CSGSDLDGDIYFVCWD ++IPP QV P+ Y PAP+ +LDH+VT+EE+EEYFTNYIVNDSL
Sbjct: 796 CSGSDLDGDIYFVCWDQDMIPPRQVQPMEYPPAPSIQLDHDVTIEEVEEYFTNYIVNDSL 855
Query: 1638 GIISNAH 1658
GIISNAH
Sbjct: 856 GIISNAH 862
>gb|ABI34311.1| RNA dependent RNA polymerase family protein [Solanum demissum]
Length = 963
Score = 392 bits (1008), Expect(2) = 0.0
Identities = 203/299 (67%), Positives = 235/299 (78%), Gaps = 1/299 (0%)
Frame = +1
Query: 1 PGMKLDATFFRCVNPQRVDIKYIEHALEKLYYAKECCYDPVSWLLEQYRKYRTSEEQPKP 180
PG L+ FFR V+PQR ++ IE ALEKLYY KECCYDPV WL EQY Y + PK
Sbjct: 134 PGPALNVYFFRLVDPQRRNVACIEQALEKLYYLKECCYDPVRWLTEQYDGYLKGRQPPKS 193
Query: 181 PTICLDDGLVYVHRVQVTPTRVYFSGPEVNMSNRVLRHFSNYIDNFLRVSFIDEEWNKMF 360
P+I LDDGLVYV RV VTP +VYF GPEVN+SNRVLR++S IDNFLRVSF+DEEW K++
Sbjct: 194 PSITLDDGLVYVRRVLVTPCKVYFCGPEVNVSNRVLRNYSEDIDNFLRVSFVDEEWEKLY 253
Query: 361 STDLSPRVAAGIGNG-RTKLYERVLSTLRNGIRIGDKRFDFLAFSSSQLRENSLWMFAPV 537
ST+L P+ A GNG RT +YER+LSTLR G IGDK+ +FLAFSSSQLR+NS+WMFA
Sbjct: 254 STELLPK--ASTGNGIRTNIYERILSTLRKGFVIGDKKIEFLAFSSSQLRDNSVWMFASR 311
Query: 538 GNLDADYIRQWMGDFSSIRNVAKYAARLGQSFGSSTETLSVSHNEVEHIPDVKVVRDGKT 717
L A+ IR WMGDFS I+NVAKYAARLGQSFGSS ETLSV +E+E IPDVKV G +
Sbjct: 312 PGLTANDIRTWMGDFSQIKNVAKYAARLGQSFGSSKETLSVLRHEIEVIPDVKV--HGTS 369
Query: 718 YTFSDGIGKISSGFAIRVASKCGIKGSVPSTFQIRYGGYKGVVAIDPTSTKKLSLRRSM 894
Y FSDGIGKIS+ FA RVASKCG++ PS FQIRYGGYKGVVA+DP S+ KLSLR+SM
Sbjct: 370 YVFSDGIGKISADFARRVASKCGLQ-YTPSAFQIRYGGYKGVVAVDPYSSMKLSLRKSM 427
Score = 365 bits (937), Expect(2) = 0.0
Identities = 179/247 (72%), Positives = 201/247 (81%), Gaps = 7/247 (2%)
Frame = +3
Query: 939 DRVFEKKQREAVAQLDAILVDPLKAQDALELMSPGENTNILKEMLNCGYKPNEEPFLSRM 1118
D V E+KQ+EAV QLDAIL D LKAQ+ALELMSPGENTNILK MLNCGY P+ EPFLS M
Sbjct: 465 DDVLEQKQKEAVDQLDAILHDSLKAQEALELMSPGENTNILKAMLNCGYMPDAEPFLSMM 524
Query: 1119 LRAFRSSKLLDLRVKARIFIPRARQMMGCMDETGTLEYGQVFVQVSGSERRGLYDQT--- 1289
L+ FR+SKLLDLR K+RIFIP R MMGC+DE+ TLEYGQVFVQ +G+ R +
Sbjct: 525 LQTFRASKLLDLRTKSRIFIPNGRAMMGCLDESRTLEYGQVFVQFTGAGHREFSEDLHPF 584
Query: 1290 ----STGSRNIITRNVAVAKNPCLHPGDVRVLTAVDVPALRHMVDCVVFPQKGMRPHPNE 1457
ST I+ NV VAKNPCLHPGD+RVL AVDVPAL HMVDCVVFPQKG RPHPNE
Sbjct: 585 NNSRSTNCNFILKGNVVVAKNPCLHPGDIRVLRAVDVPALHHMVDCVVFPQKGKRPHPNE 644
Query: 1458 CSGSDLDGDIYFVCWDPELIPPDQVPPICYDPAPNTELDHEVTVEEIEEYFTNYIVNDSL 1637
CSGSDLDGDIYFVCWD ++IPP QV P+ Y PAP+ +LDH+VT+EE+EEYFTNYIVNDSL
Sbjct: 645 CSGSDLDGDIYFVCWDQDMIPPRQVQPMEYPPAPSIQLDHDVTIEEVEEYFTNYIVNDSL 704
Query: 1638 GIISNAH 1658
GIISNAH
Sbjct: 705 GIISNAH 711
>ref|XP_002311536.1| RNA-directed RNA Polymerase family protein [Populus trichocarpa]
gi|222851356|gb|EEE88903.1| RNA-directed RNA Polymerase
family protein [Populus trichocarpa]
Length = 1133
Score = 389 bits (998), Expect(2) = 0.0
Identities = 194/297 (65%), Positives = 231/297 (77%)
Frame = +1
Query: 4 GMKLDATFFRCVNPQRVDIKYIEHALEKLYYAKECCYDPVSWLLEQYRKYRTSEEQPKPP 183
G LD F+R V+P R+ ++ IE+ALEKLY+ KECCY+P W EQY+KY TS P+ P
Sbjct: 297 GSMLDDIFYRLVDPNRMPVRCIEYALEKLYHLKECCYEPSKWFNEQYKKYLTSGNPPRSP 356
Query: 184 TICLDDGLVYVHRVQVTPTRVYFSGPEVNMSNRVLRHFSNYIDNFLRVSFIDEEWNKMFS 363
+ LD GLVYV++VQ+TP +V+F GPEVN+SNRVLR + IDNFLRVSF+DEE K+ S
Sbjct: 357 VLSLDAGLVYVYKVQITPCKVFFCGPEVNVSNRVLRQYREDIDNFLRVSFVDEELEKIHS 416
Query: 364 TDLSPRVAAGIGNGRTKLYERVLSTLRNGIRIGDKRFDFLAFSSSQLRENSLWMFAPVGN 543
TD+SPR ++ RT +Y R+LSTL+NGI IGDK+F+FLAFSSSQLRENS WMFA
Sbjct: 417 TDVSPRTSSRNELRRTAIYNRILSTLQNGIVIGDKKFEFLAFSSSQLRENSCWMFASRLG 476
Query: 544 LDADYIRQWMGDFSSIRNVAKYAARLGQSFGSSTETLSVSHNEVEHIPDVKVVRDGKTYT 723
L A IR WMG F IRNVA+YAARLGQSFGSSTETLSVS +E+E IPD++V R G Y
Sbjct: 477 LTAADIRAWMGSFHKIRNVARYAARLGQSFGSSTETLSVSSHEIEIIPDIEVSRGGTRYL 536
Query: 724 FSDGIGKISSGFAIRVASKCGIKGSVPSTFQIRYGGYKGVVAIDPTSTKKLSLRRSM 894
FSDGIGKIS+ FA +VA KCG KG PS FQIRY GYKGVVA+DPTS+KKLSLRRSM
Sbjct: 537 FSDGIGKISAEFARKVAIKCGCKGFTPSAFQIRYAGYKGVVAVDPTSSKKLSLRRSM 593
Score = 368 bits (945), Expect(2) = 0.0
Identities = 177/246 (71%), Positives = 202/246 (82%), Gaps = 6/246 (2%)
Frame = +3
Query: 939 DRVFEKKQREAVAQLDAILVDPLKAQDALELMSPGENTNILKEMLNCGYKPNEEPFLSRM 1118
D FE+KQREAV QLDA+L DPL+AQ+ALELMSPGENTNILKEML CGY+P+ EPFLS M
Sbjct: 631 DHHFERKQREAVDQLDAMLTDPLRAQEALELMSPGENTNILKEMLLCGYQPDAEPFLSMM 690
Query: 1119 LRAFRSSKLLDLRVKARIFIPRARQMMGCMDETGTLEYGQVFVQVSGSERRGLYDQTSTG 1298
L+ FR+SKLL+LR K RIFIP R MMGC+DET TLE+GQVFV+ SGS R LYD +
Sbjct: 691 LQTFRASKLLELRTKTRIFIPNGRSMMGCLDETRTLEHGQVFVKFSGSRFRNLYDSSDMF 750
Query: 1299 SRN------IITRNVAVAKNPCLHPGDVRVLTAVDVPALRHMVDCVVFPQKGMRPHPNEC 1460
S +I +V VAKNPCLHPGD+R+L AVDVPAL HMVDCVVFPQKG RPHPNEC
Sbjct: 751 SERGRGQCYLIKGSVVVAKNPCLHPGDLRILKAVDVPALHHMVDCVVFPQKGPRPHPNEC 810
Query: 1461 SGSDLDGDIYFVCWDPELIPPDQVPPICYDPAPNTELDHEVTVEEIEEYFTNYIVNDSLG 1640
SGSDLDGDIYFVCWDPELIP Q+ P+ Y P P +LDH+VT+EE+EEYFTNYIVNDSLG
Sbjct: 811 SGSDLDGDIYFVCWDPELIPSQQISPMDYTPEPPLQLDHDVTIEEVEEYFTNYIVNDSLG 870
Query: 1641 IISNAH 1658
+I+NAH
Sbjct: 871 VIANAH 876
>ref|XP_007045552.1| RNA-dependent RNA polymerase 1 isoform 1 [Theobroma cacao]
gi|590697846|ref|XP_007045553.1| RNA-dependent RNA
polymerase 1 isoform 1 [Theobroma cacao]
gi|590697850|ref|XP_007045554.1| RNA-dependent RNA
polymerase 1 isoform 1 [Theobroma cacao]
gi|508709487|gb|EOY01384.1| RNA-dependent RNA polymerase
1 isoform 1 [Theobroma cacao] gi|508709488|gb|EOY01385.1|
RNA-dependent RNA polymerase 1 isoform 1 [Theobroma
cacao] gi|508709489|gb|EOY01386.1| RNA-dependent RNA
polymerase 1 isoform 1 [Theobroma cacao]
Length = 1109
Score = 390 bits (1003), Expect(2) = 0.0
Identities = 197/298 (66%), Positives = 233/298 (78%)
Frame = +1
Query: 1 PGMKLDATFFRCVNPQRVDIKYIEHALEKLYYAKECCYDPVSWLLEQYRKYRTSEEQPKP 180
PG LDA F+R VNP R+D YI+HALEKLYY KECC++P WLLEQY+ Y S++ P
Sbjct: 295 PGPALDANFYRLVNPCRIDKVYIDHALEKLYYLKECCFEPSKWLLEQYKGYIASKKNPGS 354
Query: 181 PTICLDDGLVYVHRVQVTPTRVYFSGPEVNMSNRVLRHFSNYIDNFLRVSFIDEEWNKMF 360
P I LDDGLV V RVQ+TP+RVYF GPE+N+SNRVLRHF + IDNFLR++F+DEE K+
Sbjct: 355 PVISLDDGLVNVRRVQITPSRVYFCGPEINVSNRVLRHFHDDIDNFLRITFVDEELEKIH 414
Query: 361 STDLSPRVAAGIGNGRTKLYERVLSTLRNGIRIGDKRFDFLAFSSSQLRENSLWMFAPVG 540
STDL R N T++Y R+LSTL+NGI IGDK+F+FLAFSSSQLRENS WMFA
Sbjct: 415 STDLLTR------NRITEIYGRILSTLKNGIVIGDKQFEFLAFSSSQLRENSAWMFASRE 468
Query: 541 NLDADYIRQWMGDFSSIRNVAKYAARLGQSFGSSTETLSVSHNEVEHIPDVKVVRDGKTY 720
L A IR WMG+FS IRNVAKYAARLGQSF SSTETLSV+ +E+E I DV++ RDG Y
Sbjct: 469 GLTAADIRTWMGEFSKIRNVAKYAARLGQSFSSSTETLSVAKDEIEIIDDVEIKRDGINY 528
Query: 721 TFSDGIGKISSGFAIRVASKCGIKGSVPSTFQIRYGGYKGVVAIDPTSTKKLSLRRSM 894
FSDGIGKIS+ FA +VA+KC + G PS FQIR GG+KGVVA+DPTS+KKLSLR SM
Sbjct: 529 VFSDGIGKISAKFAKKVAAKCRLNGRTPSAFQIRIGGFKGVVAVDPTSSKKLSLRGSM 586
Score = 365 bits (937), Expect(2) = 0.0
Identities = 177/240 (73%), Positives = 197/240 (82%)
Frame = +3
Query: 939 DRVFEKKQREAVAQLDAILVDPLKAQDALELMSPGENTNILKEMLNCGYKPNEEPFLSRM 1118
D FE+KQRE V QL+AIL DPLKAQ+ALELMSPGENTNILKEML CGY+P+ EPFLS M
Sbjct: 624 DHAFEEKQREVVDQLNAILTDPLKAQEALELMSPGENTNILKEMLLCGYEPDAEPFLSMM 683
Query: 1119 LRAFRSSKLLDLRVKARIFIPRARQMMGCMDETGTLEYGQVFVQVSGSERRGLYDQTSTG 1298
L+ FR+SKLL+LR K+RIF+ R MMGC+DET TL+YGQVFVQVSGS
Sbjct: 684 LQTFRASKLLELRTKSRIFVANGRSMMGCLDETRTLDYGQVFVQVSGSRSE--------- 734
Query: 1299 SRNIITRNVAVAKNPCLHPGDVRVLTAVDVPALRHMVDCVVFPQKGMRPHPNECSGSDLD 1478
R I+ V VAKNPCLHPGDVRVLTAV+VP L HMVDCVVFPQKG RPHPNECSGSDLD
Sbjct: 735 QRFIVQGKVVVAKNPCLHPGDVRVLTAVNVPDLHHMVDCVVFPQKGSRPHPNECSGSDLD 794
Query: 1479 GDIYFVCWDPELIPPDQVPPICYDPAPNTELDHEVTVEEIEEYFTNYIVNDSLGIISNAH 1658
GDIYFVCWDPELIP Q+PP+ Y PAP L+HEVT+EE+EEYFTNYIVNDSLGII+NAH
Sbjct: 795 GDIYFVCWDPELIPSKQIPPMDYSPAPTKPLEHEVTIEEVEEYFTNYIVNDSLGIIANAH 854
>gb|ABO92977.1| putative RNA-dependent RNA-polymerase [Solanum tuberosum]
Length = 1115
Score = 394 bits (1011), Expect(2) = 0.0
Identities = 203/299 (67%), Positives = 235/299 (78%), Gaps = 1/299 (0%)
Frame = +1
Query: 1 PGMKLDATFFRCVNPQRVDIKYIEHALEKLYYAKECCYDPVSWLLEQYRKYRTSEEQPKP 180
PG L+ FFR V+PQR ++ IE ALEKLYY KECCYDPV WL EQY Y + PK
Sbjct: 286 PGPALNVYFFRLVDPQRRNVACIEQALEKLYYLKECCYDPVRWLTEQYDGYLKGRQPPKS 345
Query: 181 PTICLDDGLVYVHRVQVTPTRVYFSGPEVNMSNRVLRHFSNYIDNFLRVSFIDEEWNKMF 360
P+I LDDGLVYV RV VTP +VYF GPEVN+SNRVLR++S IDNFLRVSF+DEEW K++
Sbjct: 346 PSITLDDGLVYVRRVLVTPCKVYFCGPEVNVSNRVLRNYSEDIDNFLRVSFVDEEWEKLY 405
Query: 361 STDLSPRVAAGIGNG-RTKLYERVLSTLRNGIRIGDKRFDFLAFSSSQLRENSLWMFAPV 537
ST+L P+ A GNG RT +YER+LSTLR G IGDK+F+FLAFSSSQLR+NS+WMFA
Sbjct: 406 STELLPK--ASTGNGIRTNIYERILSTLRKGFVIGDKKFEFLAFSSSQLRDNSVWMFASR 463
Query: 538 GNLDADYIRQWMGDFSSIRNVAKYAARLGQSFGSSTETLSVSHNEVEHIPDVKVVRDGKT 717
L + IR WMGDFS I+NVAKYAARLGQSFGSS ETLSV +E+E IPDVKV G +
Sbjct: 464 RGLTTNDIRSWMGDFSQIKNVAKYAARLGQSFGSSRETLSVLRHEIEVIPDVKV--HGTS 521
Query: 718 YTFSDGIGKISSGFAIRVASKCGIKGSVPSTFQIRYGGYKGVVAIDPTSTKKLSLRRSM 894
Y FSDGIGKIS+ FA RVASKCG++ PS FQIRYGGYKGVVA+DP S+ KLSLR+SM
Sbjct: 522 YVFSDGIGKISADFARRVASKCGLQ-YTPSAFQIRYGGYKGVVAVDPYSSMKLSLRKSM 579
Score = 359 bits (921), Expect(2) = 0.0
Identities = 176/247 (71%), Positives = 199/247 (80%), Gaps = 7/247 (2%)
Frame = +3
Query: 939 DRVFEKKQREAVAQLDAILVDPLKAQDALELMSPGENTNILKEMLNCGYKPNEEPFLSRM 1118
D V E+KQ+EAV QLDAIL D LKAQ+ALELMSPGENTNILK MLNCGY P+ EPFLS M
Sbjct: 617 DDVLEQKQKEAVHQLDAILHDSLKAQEALELMSPGENTNILKAMLNCGYMPDAEPFLSMM 676
Query: 1119 LRAFRSSKLLDLRVKARIFIPRARQMMGCMDETGTLEYGQVFVQVSGSERRGLYDQT--- 1289
L+ FR+SKLLDLR ++RIFIP R MMGC+DE+ TLEYGQVFVQ +G+ R +
Sbjct: 677 LQTFRASKLLDLRTRSRIFIPNGRAMMGCLDESRTLEYGQVFVQFTGAGHREFSEDLHPF 736
Query: 1290 ----STGSRNIITRNVAVAKNPCLHPGDVRVLTAVDVPALRHMVDCVVFPQKGMRPHPNE 1457
ST I+ NV VAKNPCLHPGD+RVL AVDVPAL HMVDCVVFPQKG RPHPNE
Sbjct: 737 NNSRSTNCNFILKGNVVVAKNPCLHPGDIRVLRAVDVPALHHMVDCVVFPQKGKRPHPNE 796
Query: 1458 CSGSDLDGDIYFVCWDPELIPPDQVPPICYDPAPNTELDHEVTVEEIEEYFTNYIVNDSL 1637
CSGSDLDGDIYFVCWD ++IPP QV + Y PAP+ +LDH VT+EE+EEYFTNYIVNDSL
Sbjct: 797 CSGSDLDGDIYFVCWDQDMIPPRQVQAMEYPPAPSIQLDHNVTIEEVEEYFTNYIVNDSL 856
Query: 1638 GIISNAH 1658
GII+NAH
Sbjct: 857 GIIANAH 863
>gb|AAT38699.2| RNA dependent RNA polymerase family protein [Solanum demissum]
Length = 963
Score = 394 bits (1011), Expect(2) = 0.0
Identities = 203/299 (67%), Positives = 235/299 (78%), Gaps = 1/299 (0%)
Frame = +1
Query: 1 PGMKLDATFFRCVNPQRVDIKYIEHALEKLYYAKECCYDPVSWLLEQYRKYRTSEEQPKP 180
PG L+ FFR V+PQR ++ IE ALEKLYY KECCYDPV WL EQY Y + PK
Sbjct: 134 PGPALNVYFFRLVDPQRRNVACIEQALEKLYYLKECCYDPVRWLTEQYDGYLKGRQPPKS 193
Query: 181 PTICLDDGLVYVHRVQVTPTRVYFSGPEVNMSNRVLRHFSNYIDNFLRVSFIDEEWNKMF 360
P+I LDDGLVYV RV VTP +VYF GPEVN+SNRVLR++S IDNFLRVSF+DEEW K++
Sbjct: 194 PSITLDDGLVYVRRVLVTPCKVYFCGPEVNVSNRVLRNYSEDIDNFLRVSFVDEEWEKLY 253
Query: 361 STDLSPRVAAGIGNG-RTKLYERVLSTLRNGIRIGDKRFDFLAFSSSQLRENSLWMFAPV 537
ST+L P+ A GNG RT +YER+LSTLR G IGDK+F+FLAFSSSQLR+NS+WMFA
Sbjct: 254 STELLPK--ASTGNGIRTNIYERILSTLRKGFVIGDKKFEFLAFSSSQLRDNSVWMFASR 311
Query: 538 GNLDADYIRQWMGDFSSIRNVAKYAARLGQSFGSSTETLSVSHNEVEHIPDVKVVRDGKT 717
L + IR WMGDFS I+NVAKYAARLGQSFGSS ETLSV +E+E IPDVKV G +
Sbjct: 312 RGLTTNDIRSWMGDFSQIKNVAKYAARLGQSFGSSRETLSVLRHEIEVIPDVKV--HGTS 369
Query: 718 YTFSDGIGKISSGFAIRVASKCGIKGSVPSTFQIRYGGYKGVVAIDPTSTKKLSLRRSM 894
Y FSDGIGKIS+ FA RVASKCG++ PS FQIRYGGYKGVVA+DP S+ KLSLR+SM
Sbjct: 370 YVFSDGIGKISADFARRVASKCGLQ-YTPSAFQIRYGGYKGVVAVDPYSSMKLSLRKSM 427
Score = 359 bits (921), Expect(2) = 0.0
Identities = 176/247 (71%), Positives = 199/247 (80%), Gaps = 7/247 (2%)
Frame = +3
Query: 939 DRVFEKKQREAVAQLDAILVDPLKAQDALELMSPGENTNILKEMLNCGYKPNEEPFLSRM 1118
D V E+KQ+EAV QLDAIL D LKAQ+ALELMSPGENTNILK MLNCGY P+ EPFLS M
Sbjct: 465 DDVLEQKQKEAVHQLDAILHDSLKAQEALELMSPGENTNILKAMLNCGYMPDAEPFLSMM 524
Query: 1119 LRAFRSSKLLDLRVKARIFIPRARQMMGCMDETGTLEYGQVFVQVSGSERRGLYDQT--- 1289
L+ FR+SKLLDLR ++RIFIP R MMGC+DE+ TLEYGQVFVQ +G+ R +
Sbjct: 525 LQTFRASKLLDLRTRSRIFIPNGRAMMGCLDESRTLEYGQVFVQFTGAGHREFSEDLHPF 584
Query: 1290 ----STGSRNIITRNVAVAKNPCLHPGDVRVLTAVDVPALRHMVDCVVFPQKGMRPHPNE 1457
ST I+ NV VAKNPCLHPGD+RVL AVDVPAL HMVDCVVFPQKG RPHPNE
Sbjct: 585 NNSRSTNCNFILKGNVVVAKNPCLHPGDIRVLRAVDVPALHHMVDCVVFPQKGKRPHPNE 644
Query: 1458 CSGSDLDGDIYFVCWDPELIPPDQVPPICYDPAPNTELDHEVTVEEIEEYFTNYIVNDSL 1637
CSGSDLDGDIYFVCWD ++IPP QV + Y PAP+ +LDH VT+EE+EEYFTNYIVNDSL
Sbjct: 645 CSGSDLDGDIYFVCWDQDMIPPRQVQAMEYPPAPSIQLDHNVTIEEVEEYFTNYIVNDSL 704
Query: 1638 GIISNAH 1658
GII+NAH
Sbjct: 705 GIIANAH 711
>ref|XP_006366108.1| PREDICTED: RNA-dependent RNA polymerase 1-like [Solanum tuberosum]
Length = 1115
Score = 390 bits (1003), Expect(2) = 0.0
Identities = 203/299 (67%), Positives = 234/299 (78%), Gaps = 1/299 (0%)
Frame = +1
Query: 1 PGMKLDATFFRCVNPQRVDIKYIEHALEKLYYAKECCYDPVSWLLEQYRKYRTSEEQPKP 180
PG L+ FFR V+PQR ++ IE ALEKLYY KECCYDPV WL EQY Y + PK
Sbjct: 286 PGPALNVNFFRLVDPQRRNVACIEQALEKLYYLKECCYDPVRWLTEQYDGYLKGRQPPKS 345
Query: 181 PTICLDDGLVYVHRVQVTPTRVYFSGPEVNMSNRVLRHFSNYIDNFLRVSFIDEEWNKMF 360
P+I LDDGLVYV RV VTP +VYF GPEVN+SNRVLR++S IDNFLRVSF+DEEW K++
Sbjct: 346 PSINLDDGLVYVRRVLVTPCKVYFCGPEVNVSNRVLRNYSEDIDNFLRVSFVDEEWEKLY 405
Query: 361 STDLSPRVAAGIGNG-RTKLYERVLSTLRNGIRIGDKRFDFLAFSSSQLRENSLWMFAPV 537
STDL P+ A GNG RT +Y R+LSTL+ G IGDK+F+FLAFSSSQLR+NS+WMFA
Sbjct: 406 STDLLPK--ASTGNGIRTNIYVRILSTLQKGFVIGDKKFEFLAFSSSQLRDNSVWMFASR 463
Query: 538 GNLDADYIRQWMGDFSSIRNVAKYAARLGQSFGSSTETLSVSHNEVEHIPDVKVVRDGKT 717
L A IR WMGDFS I+NVAKYAARLGQSFGSS ETLSV +E+E IPDVKV G +
Sbjct: 464 PGLTAIDIRTWMGDFSQIKNVAKYAARLGQSFGSSKETLSVLRHEIEIIPDVKV--HGTS 521
Query: 718 YTFSDGIGKISSGFAIRVASKCGIKGSVPSTFQIRYGGYKGVVAIDPTSTKKLSLRRSM 894
Y FSDGIGKIS+ FA RVASKCG++ PS FQIRYGGYKGVVA+DP S+ KLSLR+SM
Sbjct: 522 YVFSDGIGKISADFARRVASKCGLQ-YTPSAFQIRYGGYKGVVAVDPYSSMKLSLRKSM 579
Score = 361 bits (926), Expect(2) = 0.0
Identities = 177/247 (71%), Positives = 200/247 (80%), Gaps = 7/247 (2%)
Frame = +3
Query: 939 DRVFEKKQREAVAQLDAILVDPLKAQDALELMSPGENTNILKEMLNCGYKPNEEPFLSRM 1118
D V E+KQ+EAV QLDAIL D LKAQ+ALELMSPGENTNILK MLNCGY P+ EPFLS M
Sbjct: 617 DDVLEQKQKEAVDQLDAILHDSLKAQEALELMSPGENTNILKAMLNCGYMPDAEPFLSMM 676
Query: 1119 LRAFRSSKLLDLRVKARIFIPRARQMMGCMDETGTLEYGQVFVQVSGSERRGLYDQT--- 1289
L+ FR+SKLLDLR ++RIFIP R MMGC+DE+ TLEYGQVFVQ +GS R +
Sbjct: 677 LQTFRASKLLDLRTRSRIFIPNGRAMMGCLDESRTLEYGQVFVQFTGSGHREFSEDLHPF 736
Query: 1290 ----STGSRNIITRNVAVAKNPCLHPGDVRVLTAVDVPALRHMVDCVVFPQKGMRPHPNE 1457
ST I+ NV VAKNPCLHPGD+RVL AVDVPAL HMVDCVVFPQKG RPHPNE
Sbjct: 737 NNSRSTNCNFILKGNVVVAKNPCLHPGDIRVLRAVDVPALHHMVDCVVFPQKGKRPHPNE 796
Query: 1458 CSGSDLDGDIYFVCWDPELIPPDQVPPICYDPAPNTELDHEVTVEEIEEYFTNYIVNDSL 1637
CSGSDLDGDIYFVCWD ++IPP QV + Y PAP+ +LDH+VT+EE+EEYFTNYIVNDSL
Sbjct: 797 CSGSDLDGDIYFVCWDQDMIPPRQVQAMEYPPAPSIQLDHDVTIEEVEEYFTNYIVNDSL 856
Query: 1638 GIISNAH 1658
GII+NAH
Sbjct: 857 GIIANAH 863
>gb|EXB53859.1| RNA-dependent RNA polymerase 1 [Morus notabilis]
Length = 1133
Score = 395 bits (1016), Expect(2) = 0.0
Identities = 198/298 (66%), Positives = 234/298 (78%), Gaps = 1/298 (0%)
Frame = +1
Query: 4 GMKLDATFFRCVNPQRV-DIKYIEHALEKLYYAKECCYDPVSWLLEQYRKYRTSEEQPKP 180
G LD F+R V+PQR+ ++ I +ALEKL+ KEC Y+P +WL EQYRKY T+ PKP
Sbjct: 297 GPTLDVDFYRLVDPQRIRNVDCINYALEKLFNLKECPYEPAAWLNEQYRKYLTAPRPPKP 356
Query: 181 PTICLDDGLVYVHRVQVTPTRVYFSGPEVNMSNRVLRHFSNYIDNFLRVSFIDEEWNKMF 360
P I LD GLVYV RVQVTP++VYF GPE+N+SNRVLR + +YID FLRVSF+DEE K+F
Sbjct: 357 PAIALDSGLVYVRRVQVTPSKVYFCGPEINVSNRVLREYIDYIDYFLRVSFVDEELEKLF 416
Query: 361 STDLSPRVAAGIGNGRTKLYERVLSTLRNGIRIGDKRFDFLAFSSSQLRENSLWMFAPVG 540
STDLSPR + + RT +Y R+LS LRNGI IGD++F+FLAFSSSQLR+NSLWMFA V
Sbjct: 417 STDLSPRTSNANEDRRTGIYRRILSVLRNGIEIGDRKFEFLAFSSSQLRDNSLWMFAAVD 476
Query: 541 NLDADYIRQWMGDFSSIRNVAKYAARLGQSFGSSTETLSVSHNEVEHIPDVKVVRDGKTY 720
AD IRQW+GDF SIRNVAKYAARLGQSFGSSTETL+V +E E I D+++ R Y
Sbjct: 477 GHSADTIRQWIGDFRSIRNVAKYAARLGQSFGSSTETLTVDESETEVISDIEIERGAVKY 536
Query: 721 TFSDGIGKISSGFAIRVASKCGIKGSVPSTFQIRYGGYKGVVAIDPTSTKKLSLRRSM 894
FSDGIGKISS FA RVA KCG+K VPS FQIRY GYKGVVA+DPTS+ KLSLR+SM
Sbjct: 537 VFSDGIGKISSTFAKRVAKKCGLKDCVPSAFQIRYCGYKGVVAVDPTSSTKLSLRKSM 594
Score = 355 bits (911), Expect(2) = 0.0
Identities = 173/246 (70%), Positives = 197/246 (80%), Gaps = 6/246 (2%)
Frame = +3
Query: 939 DRVFEKKQREAVAQLDAILVDPLKAQDALELMSPGENTNILKEMLNCGYKPNEEPFLSRM 1118
DRVFEKKQREAV QL+AIL DPL+A++AL+LMS GE TNILKE+L+CGY+PN EPFLS M
Sbjct: 632 DRVFEKKQREAVQQLNAILNDPLRAREALDLMSAGETTNILKELLSCGYQPNAEPFLSMM 691
Query: 1119 LRAFRSSKLLDLRVKARIFIPRARQMMGCMDETGTLEYGQVFVQVSGSERRGLYDQ---- 1286
L+AFR+SKL +LR K RI IP R MMGC+DE TLEYG+VFVQ SG R ++
Sbjct: 692 LQAFRASKLQELRTKTRISIPDGRAMMGCLDEMRTLEYGEVFVQFSGITHRPFFEDSFML 751
Query: 1287 --TSTGSRNIITRNVAVAKNPCLHPGDVRVLTAVDVPALRHMVDCVVFPQKGMRPHPNEC 1460
T +G I+ V VAKNPCLHPGDVRVL AV+VPAL HMVDCVVFPQKG RPHPNEC
Sbjct: 752 GGTGSGQNYIVVGRVVVAKNPCLHPGDVRVLRAVNVPALHHMVDCVVFPQKGSRPHPNEC 811
Query: 1461 SGSDLDGDIYFVCWDPELIPPDQVPPICYDPAPNTELDHEVTVEEIEEYFTNYIVNDSLG 1640
SGSDLDGDIYFVCWD ELIP Q P+ Y PAP T LDH+V +EE++EYFTNYIVNDSLG
Sbjct: 812 SGSDLDGDIYFVCWDDELIPQKQFEPMDYSPAPTTRLDHDVRIEEVQEYFTNYIVNDSLG 871
Query: 1641 IISNAH 1658
II+NAH
Sbjct: 872 IIANAH 877
>gb|AAT39936.2| RNA-directed RNA polymerase-like, putative [Solanum demissum]
Length = 1137
Score = 390 bits (1002), Expect(2) = 0.0
Identities = 201/299 (67%), Positives = 234/299 (78%), Gaps = 1/299 (0%)
Frame = +1
Query: 1 PGMKLDATFFRCVNPQRVDIKYIEHALEKLYYAKECCYDPVSWLLEQYRKYRTSEEQPKP 180
PG L+ FFR V+PQR ++ IE ALEKLYY KECCYDPV WL EQY Y + PK
Sbjct: 322 PGPALNVYFFRLVDPQRRNVACIEQALEKLYYLKECCYDPVRWLTEQYDGYFKGRQPPKS 381
Query: 181 PTICLDDGLVYVHRVQVTPTRVYFSGPEVNMSNRVLRHFSNYIDNFLRVSFIDEEWNKMF 360
P+I LDDGLVYV RV VTP +VYF GPEVN+SNRVLR++S IDNFLRVSF+DEEW K++
Sbjct: 382 PSITLDDGLVYVRRVLVTPCKVYFCGPEVNVSNRVLRNYSEDIDNFLRVSFVDEEWEKLY 441
Query: 361 STDLSPRVAAGIGNG-RTKLYERVLSTLRNGIRIGDKRFDFLAFSSSQLRENSLWMFAPV 537
ST+L P+ A GNG RT +YER+LSTLR G IGDK+F+FLAFSSSQLR+NS+WMFA
Sbjct: 442 STELLPK--ASTGNGIRTNIYERILSTLRKGFVIGDKKFEFLAFSSSQLRDNSVWMFASR 499
Query: 538 GNLDADYIRQWMGDFSSIRNVAKYAARLGQSFGSSTETLSVSHNEVEHIPDVKVVRDGKT 717
L A+ IR WMGDFS I+NVAKYAAR GQSFGSS ETLSV +E+E IPDVKV G +
Sbjct: 500 RGLTANDIRSWMGDFSQIKNVAKYAARFGQSFGSSRETLSVLRHEIEVIPDVKV--HGTS 557
Query: 718 YTFSDGIGKISSGFAIRVASKCGIKGSVPSTFQIRYGGYKGVVAIDPTSTKKLSLRRSM 894
Y FSDGIGKIS+ FA +VAS CG++ PS FQIRYGGYKGVVA+DP S+ KLSLR+SM
Sbjct: 558 YVFSDGIGKISADFARKVASNCGLQ-YTPSAFQIRYGGYKGVVAVDPYSSMKLSLRKSM 615
Score = 356 bits (913), Expect(2) = 0.0
Identities = 174/247 (70%), Positives = 198/247 (80%), Gaps = 7/247 (2%)
Frame = +3
Query: 939 DRVFEKKQREAVAQLDAILVDPLKAQDALELMSPGENTNILKEMLNCGYKPNEEPFLSRM 1118
D V E+KQ+EAV QLDAIL D LKAQ+ALELMSPGENTNILK MLNCGY P+ EPFLS M
Sbjct: 653 DDVLEQKQKEAVDQLDAILHDSLKAQEALELMSPGENTNILKAMLNCGYMPDAEPFLSMM 712
Query: 1119 LRAFRSSKLLDLRVKARIFIPRARQMMGCMDETGTLEYGQVFVQVSGSERRGLYDQT--- 1289
L+ FR+SKLLDLR K+RIFIP R MMGC+DE+ TLEYGQVFVQ +G+ R +
Sbjct: 713 LQTFRASKLLDLRTKSRIFIPNGRAMMGCLDESRTLEYGQVFVQFTGAGHREFSEDLHPF 772
Query: 1290 ----STGSRNIITRNVAVAKNPCLHPGDVRVLTAVDVPALRHMVDCVVFPQKGMRPHPNE 1457
ST I+ NV VAKNPCLHPGD+RVL AVDVPAL HMVDCVVFPQKG RPHPNE
Sbjct: 773 NNSRSTNCNFILKGNVVVAKNPCLHPGDIRVLRAVDVPALHHMVDCVVFPQKGKRPHPNE 832
Query: 1458 CSGSDLDGDIYFVCWDPELIPPDQVPPICYDPAPNTELDHEVTVEEIEEYFTNYIVNDSL 1637
CSGSDLDGDIYFVCWD ++IPP QV + + P P+ +LDH+VT+EE+EEYFTNYIVND L
Sbjct: 833 CSGSDLDGDIYFVCWDQDMIPPRQVQAMEFPPPPSIQLDHDVTIEEVEEYFTNYIVNDGL 892
Query: 1638 GIISNAH 1658
GII+NAH
Sbjct: 893 GIIANAH 899
>gb|ABO92978.1| putative RNA-dependent RNA-polymerase [Solanum tuberosum]
Length = 935
Score = 390 bits (1002), Expect(2) = 0.0
Identities = 201/299 (67%), Positives = 234/299 (78%), Gaps = 1/299 (0%)
Frame = +1
Query: 1 PGMKLDATFFRCVNPQRVDIKYIEHALEKLYYAKECCYDPVSWLLEQYRKYRTSEEQPKP 180
PG L+ FFR V+PQR ++ IE ALEKLYY KECCYDPV WL EQY Y + PK
Sbjct: 286 PGPALNVYFFRLVDPQRRNVACIEQALEKLYYLKECCYDPVRWLTEQYDGYFKGRQPPKS 345
Query: 181 PTICLDDGLVYVHRVQVTPTRVYFSGPEVNMSNRVLRHFSNYIDNFLRVSFIDEEWNKMF 360
P+I LDDGLVYV RV VTP +VYF GPEVN+SNRVLR++S IDNFLRVSF+DEEW K++
Sbjct: 346 PSITLDDGLVYVRRVLVTPCKVYFCGPEVNVSNRVLRNYSEDIDNFLRVSFVDEEWEKLY 405
Query: 361 STDLSPRVAAGIGNG-RTKLYERVLSTLRNGIRIGDKRFDFLAFSSSQLRENSLWMFAPV 537
ST+L P+ A GNG RT +YER+LSTLR G IGDK+F+FLAFSSSQLR+NS+WMFA
Sbjct: 406 STELLPK--ASTGNGIRTNIYERILSTLRKGFVIGDKKFEFLAFSSSQLRDNSVWMFASR 463
Query: 538 GNLDADYIRQWMGDFSSIRNVAKYAARLGQSFGSSTETLSVSHNEVEHIPDVKVVRDGKT 717
L A+ IR WMGDFS I+NVAKYAAR GQSFGSS ETLSV +E+E IPDVKV G +
Sbjct: 464 RGLTANDIRSWMGDFSQIKNVAKYAARFGQSFGSSRETLSVLRHEIEVIPDVKV--HGTS 521
Query: 718 YTFSDGIGKISSGFAIRVASKCGIKGSVPSTFQIRYGGYKGVVAIDPTSTKKLSLRRSM 894
Y FSDGIGKIS+ FA +VAS CG++ PS FQIRYGGYKGVVA+DP S+ KLSLR+SM
Sbjct: 522 YVFSDGIGKISADFARKVASNCGLQ-YTPSAFQIRYGGYKGVVAVDPYSSMKLSLRKSM 579
Score = 356 bits (913), Expect(2) = 0.0
Identities = 174/247 (70%), Positives = 198/247 (80%), Gaps = 7/247 (2%)
Frame = +3
Query: 939 DRVFEKKQREAVAQLDAILVDPLKAQDALELMSPGENTNILKEMLNCGYKPNEEPFLSRM 1118
D V E+KQ+EAV QLDAIL D LKAQ+ALELMSPGENTNILK MLNCGY P+ EPFLS M
Sbjct: 617 DDVLEQKQKEAVDQLDAILHDSLKAQEALELMSPGENTNILKAMLNCGYMPDAEPFLSMM 676
Query: 1119 LRAFRSSKLLDLRVKARIFIPRARQMMGCMDETGTLEYGQVFVQVSGSERRGLYDQT--- 1289
L+ FR+SKLLDLR K+RIFIP R MMGC+DE+ TLEYGQVFVQ +G+ R +
Sbjct: 677 LQTFRASKLLDLRTKSRIFIPNGRAMMGCLDESRTLEYGQVFVQFTGAGHREFSEDLHPF 736
Query: 1290 ----STGSRNIITRNVAVAKNPCLHPGDVRVLTAVDVPALRHMVDCVVFPQKGMRPHPNE 1457
ST I+ NV VAKNPCLHPGD+RVL AVDVPAL HMVDCVVFPQKG RPHPNE
Sbjct: 737 NNSRSTNCNFILKGNVVVAKNPCLHPGDIRVLRAVDVPALHHMVDCVVFPQKGKRPHPNE 796
Query: 1458 CSGSDLDGDIYFVCWDPELIPPDQVPPICYDPAPNTELDHEVTVEEIEEYFTNYIVNDSL 1637
CSGSDLDGDIYFVCWD ++IPP QV + + P P+ +LDH+VT+EE+EEYFTNYIVND L
Sbjct: 797 CSGSDLDGDIYFVCWDQDMIPPRQVQAMEFPPPPSIQLDHDVTIEEVEEYFTNYIVNDGL 856
Query: 1638 GIISNAH 1658
GII+NAH
Sbjct: 857 GIIANAH 863
>gb|ABQ45352.1| RNA-dependent RNA polymerase [Gossypium hirsutum]
Length = 1110
Score = 383 bits (984), Expect(2) = 0.0
Identities = 192/298 (64%), Positives = 232/298 (77%)
Frame = +1
Query: 1 PGMKLDATFFRCVNPQRVDIKYIEHALEKLYYAKECCYDPVSWLLEQYRKYRTSEEQPKP 180
PG LD TF+R V+P R+ YI+HALEKLYY +ECCY+P WL E+Y+ + S +
Sbjct: 295 PGPALDDTFYRLVDPCRMHKVYIDHALEKLYYLRECCYEPSRWLFEEYKNFSRSRKYQGS 354
Query: 181 PTICLDDGLVYVHRVQVTPTRVYFSGPEVNMSNRVLRHFSNYIDNFLRVSFIDEEWNKMF 360
PTI LD+GLVYV RVQ+TP+RVYF GPE+N+SNRVLR F N IDNFLR+SF+DEE K+
Sbjct: 355 PTISLDEGLVYVRRVQITPSRVYFCGPEINVSNRVLRQFHNDIDNFLRISFVDEELEKIH 414
Query: 361 STDLSPRVAAGIGNGRTKLYERVLSTLRNGIRIGDKRFDFLAFSSSQLRENSLWMFAPVG 540
ST++ R RT +Y+R+LSTLRNGI IG+KRF+FLAFSSSQLRENS WMFA
Sbjct: 415 STNVQAR------GRRTGIYKRILSTLRNGIVIGNKRFEFLAFSSSQLRENSAWMFASRK 468
Query: 541 NLDADYIRQWMGDFSSIRNVAKYAARLGQSFGSSTETLSVSHNEVEHIPDVKVVRDGKTY 720
L A IR WMG+FS IRNVAKYAARLGQSF SSTETLSVS +E+ IPD+++++DG Y
Sbjct: 469 GLTAADIRSWMGNFSKIRNVAKYAARLGQSFSSSTETLSVSKDEINLIPDIEIMKDGIKY 528
Query: 721 TFSDGIGKISSGFAIRVASKCGIKGSVPSTFQIRYGGYKGVVAIDPTSTKKLSLRRSM 894
FSDGIGKIS+ FA +VA+KC +KG PS FQIR GG+KGVVAIDPTS+ KLSLR+SM
Sbjct: 529 VFSDGIGKISAEFAKKVAAKCRLKGCTPSAFQIRIGGFKGVVAIDPTSSWKLSLRKSM 586
Score = 362 bits (930), Expect(2) = 0.0
Identities = 178/240 (74%), Positives = 195/240 (81%)
Frame = +3
Query: 939 DRVFEKKQREAVAQLDAILVDPLKAQDALELMSPGENTNILKEMLNCGYKPNEEPFLSRM 1118
DR FEKKQRE V QL+A+L DPL+AQ+ALELMSPGENTNILKEML CGYKP+ EPFLS M
Sbjct: 624 DRAFEKKQREVVDQLNALLTDPLEAQEALELMSPGENTNILKEMLLCGYKPDAEPFLSMM 683
Query: 1119 LRAFRSSKLLDLRVKARIFIPRARQMMGCMDETGTLEYGQVFVQVSGSERRGLYDQTSTG 1298
L FR+SKLL+LR KARIF+ + R MMGC+DET TL YGQVFVQ SGS
Sbjct: 684 LETFRASKLLELRTKARIFVQKGRSMMGCLDETRTLNYGQVFVQFSGSRSE--------- 734
Query: 1299 SRNIITRNVAVAKNPCLHPGDVRVLTAVDVPALRHMVDCVVFPQKGMRPHPNECSGSDLD 1478
R I+ V VAKNPCLHPGDVRVL AV+VP L HMVDCVVFPQKG RPHPNECSGSDLD
Sbjct: 735 RRFIVQGKVIVAKNPCLHPGDVRVLRAVNVPDLHHMVDCVVFPQKGTRPHPNECSGSDLD 794
Query: 1479 GDIYFVCWDPELIPPDQVPPICYDPAPNTELDHEVTVEEIEEYFTNYIVNDSLGIISNAH 1658
GD+YFVCWDPELIP Q+ P+ Y PA T+LDHEVT+EEIEEYFTNYIVNDSLGIISNAH
Sbjct: 795 GDVYFVCWDPELIPYKQIDPMDYSPASTTKLDHEVTIEEIEEYFTNYIVNDSLGIISNAH 854