BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Mentha28_contig00004320
         (2171 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AEI98616.1| hypothetical protein 111O18.3 [Coffea canephora]       269   e-130
ref|XP_006355441.1| PREDICTED: DNA-directed RNA polymerase III s...   244   e-129
ref|XP_004245771.1| PREDICTED: DNA-directed RNA polymerase III s...   241   e-127
ref|XP_006355442.1| PREDICTED: DNA-directed RNA polymerase III s...   235   e-126
emb|CBI17549.3| unnamed protein product [Vitis vinifera]              239   e-125
ref|XP_002268044.2| PREDICTED: DNA-directed RNA polymerase III s...   236   e-124
ref|XP_002310208.2| hypothetical protein POPTR_0007s12540g [Popu...   198   e-117
ref|XP_004232385.1| PREDICTED: uncharacterized protein LOC101252...   229   e-116
gb|ABU45193.1| unknown [Petunia integrifolia subsp. inflata]          225   e-114
ref|XP_007046991.1| SIN-like family protein, putative isoform 1 ...   210   e-113
ref|XP_002525112.1| DNA-directed RNA polymerase, putative [Ricin...   208   e-113
ref|XP_004149158.1| PREDICTED: DNA-directed RNA polymerase III s...   187   e-109
ref|XP_007046992.1| Transcription regulators,zinc ion binding, p...   210   e-109
ref|XP_004164787.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed...   187   e-109
ref|XP_007046993.1| Transcription regulators,zinc ion binding, p...   210   e-108
gb|ABU45208.1| unknown [Solanum bulbocastanum]                        226   e-108
gb|EYU44675.1| hypothetical protein MIMGU_mgv1a004477mg [Mimulus...   231   e-107
ref|XP_003611964.1| DNA-directed RNA polymerase III subunit RPC5...   190   e-107
gb|ABU45189.1| unknown [Capsicum frutescens]                          197   e-106
gb|EXB77882.1| DNA-directed RNA polymerase III subunit RPC5 [Mor...   193   e-104

>gb|AEI98616.1| hypothetical protein 111O18.3 [Coffea canephora]
          Length = 643

 Score =  269 bits (688), Expect(3) = e-130
 Identities = 145/304 (47%), Positives = 193/304 (63%), Gaps = 8/304 (2%)
 Frame = +1

Query: 454  KKQKAP-----EPIKDSEEGWVPLKYHSVSSDMAAGYLQKMVAREGSEVHFSMSPDDYLN 618
            KKQ  P     E  KD+ E W+PL YH   SD++  Y++KMV  + S + FSM+  DY+N
Sbjct: 255  KKQGKPSGPVIEQNKDTREDWIPLNYHGARSDISMSYVRKMVEHDSSHIQFSMN-HDYVN 313

Query: 619  SLCPGTFCDSLSSKGPLRRSLLAKPLNERFKTWLLEGPPLHRFDTLKYLAPDDSIXXXXX 798
            +LCPGT  ++  S GP  R LL+ PL ERF+TWLL+GPP+HRFD LK+LAPD S+     
Sbjct: 314  TLCPGTSNENNGSNGP-SRVLLSLPLEERFRTWLLQGPPIHRFDALKHLAPDASVEDILA 372

Query: 799  XXXXXXXXXXGLWVPRTSLVYG--DGIAALARNYVLLLFSKDVIIKDEQLPKSPPLVKAM 972
                      GLW+P++SL+YG   GI ALAR+YVLLLFS+  II + QLP+   L +AM
Sbjct: 373  VLSQHAQLVQGLWIPKSSLLYGKDQGIDALARDYVLLLFSRTPIINNSQLPQQQKLNRAM 432

Query: 973  KDVLHGLATYRNKLKDWKLKELPDLNFIRLNPAVVKKQQEMWERVEKSIEDSVSGGRNRP 1152
            +DVL  +A  R  L DWK KE PD+ FI+LNP +V++Q++ WER+EK I + + G +NRP
Sbjct: 433  RDVLDTVAFERVSLNDWKFKEPPDMTFIKLNPKIVREQEQTWERLEKLITEKIFGDKNRP 492

Query: 1153 GAK-TSKSSAPKNLVESKGSGKLGAGPSSGSTSQNVMPEEVREAIKKALQKLFRSTKTCS 1329
              K +S+     N   SK   K  +   +    +  M EE REA+ KALQKLF+S K C 
Sbjct: 493  ATKNSSRPLTTNNPATSKSLSKHASNSLNAGVPRRPMSEETREALPKALQKLFQSHKVC- 551

Query: 1330 FQQI 1341
            FQQI
Sbjct: 552  FQQI 555



 Score =  201 bits (510), Expect(3) = e-130
 Identities = 93/128 (72%), Positives = 107/128 (83%)
 Frame = +2

Query: 29  VVREIDVYFAPSVDPETQLYLFQYPLRPLWRPYELDERCQEVRVKPTSAEVEVDLAIDVD 208
           +VREIDVY  PS+DP T+LY+ QYPLRPLWRPYELD+RC+EVRVK  SAEVEVDLA+DVD
Sbjct: 107 IVREIDVYLTPSIDPNTKLYVLQYPLRPLWRPYELDDRCEEVRVKCKSAEVEVDLAVDVD 166

Query: 209 SKNYDASADPKLQMDKQTLALSWKPPKANGCTVGVLTGNKLHLNPIHAVIQLRPSMRHLA 388
           SKNYD+ ADP++ M KQTL  SWKPP   G  VGVL GNKLHLNPIHAV+QLRPSM+H  
Sbjct: 167 SKNYDSDADPRVSMTKQTLTSSWKPPVTAGYAVGVLVGNKLHLNPIHAVVQLRPSMQHYK 226

Query: 389 LKESKKRT 412
            + SK+RT
Sbjct: 227 PESSKRRT 234



 Score = 46.6 bits (109), Expect(3) = e-130
 Identities = 31/98 (31%), Positives = 41/98 (41%)
 Frame = +3

Query: 1395 PNEFQAIISEVAVNVHGICVPISSHDNKDYDNIRKVVIDLFLAEGPNARLKKAHIVEAVN 1574
            P E QAIIS+VA+N+HG+ V  SS  + ++D                             
Sbjct: 588  PEELQAIISQVAINIHGVYVLKSSPVHPEHDEF--------------------------- 620

Query: 1575 LQLKGEVVTDAAYKKVLHELCVSQGSGWVLRNDDSNLK 1688
                           V+ ELCVSQGS WVL++ D N K
Sbjct: 621  ---------------VVQELCVSQGSAWVLKSGDGNPK 643


>ref|XP_006355441.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC5-like isoform
            X1 [Solanum tuberosum]
          Length = 669

 Score =  244 bits (622), Expect(3) = e-129
 Identities = 144/300 (48%), Positives = 175/300 (58%), Gaps = 3/300 (1%)
 Frame = +1

Query: 451  SKKQKAPEPI-KDSEEGWVPLKYHSVSSDMAAGYLQKMVAREGSEVHFSMSPDDYLNSLC 627
            SKKQ  P  I KD  E W+ LKYH   SD++A YLQKM   EGS V FSMSP DYLN+  
Sbjct: 246  SKKQNKPPGIEKDIGEHWLHLKYHGARSDISARYLQKMAMEEGSPVPFSMSPVDYLNAFF 305

Query: 628  PGTFCDSLSSKGPLRRSLLAKPLNERFKTWLLEGPPLHRFDTLKYLAPDDSIXXXXXXXX 807
            PG   D+   K  LR  L   PL ER +TWLLEGPP+HRFD LK+LAPD+S         
Sbjct: 306  PGRPTDTDRLK-ILRTRLSQLPLEERVRTWLLEGPPIHRFDALKHLAPDNSADEIIRVLQ 364

Query: 808  XXXXXXXGLWVPRTSLVYG--DGIAALARNYVLLLFSKDVIIKDEQLPKSPPLVKAMKDV 981
                   GLWVP++SLVYG   G+  LARN+VL  F+K ++IK     + P  +KA    
Sbjct: 365  IYAQLVQGLWVPKSSLVYGTNSGVEVLARNFVLYEFTKGILIKKSVFGRRPEFLKAATPA 424

Query: 982  LHGLATYRNKLKDWKLKELPDLNFIRLNPAVVKKQQEMWERVEKSIEDSVSGGRNRPGAK 1161
            L  LA  R  L DWKLKE PD  F  L   VV+++Q  WE + K I D + GGRNRP  K
Sbjct: 425  LKSLAVERPDLNDWKLKEHPDKKFENLYGDVVREKQATWECLGKQINDVLPGGRNRPTMK 484

Query: 1162 TSKSSAPKNLVESKGSGKLGAGPSSGSTSQNVMPEEVREAIKKALQKLFRSTKTCSFQQI 1341
                  P N      +   G  P+S S  +  M EE+REA+ KALQ++FR+ K CSFQQI
Sbjct: 485  N-----PLNPNADIPALPSGDKPTSSSLLRTSMSEEIREALPKALQEVFRTYKVCSFQQI 539



 Score =  163 bits (413), Expect(3) = e-129
 Identities = 81/128 (63%), Positives = 99/128 (77%), Gaps = 2/128 (1%)
 Frame = +2

Query: 29  VVREIDVYFAPSVDPETQLYLFQYPLRPLWRPYELDERCQEVRVKPTSAEVEVDLAIDVD 208
           VVREIDV   PS DP TQLY+FQYPLR +WRPYEL+ERCQEVR++P++AE+EVDLAID+D
Sbjct: 94  VVREIDVCINPSFDPSTQLYVFQYPLRAVWRPYELEERCQEVRLRPSTAEMEVDLAIDLD 153

Query: 209 SKNYDASADPKLQMDKQTLALSWK--PPKANGCTVGVLTGNKLHLNPIHAVIQLRPSMRH 382
           SKN+D  +     + KQ L+ SW   P  A+G  VGVL G+KLHLNP+HAV+QLRPS R+
Sbjct: 154 SKNFDRDSVHAATIKKQMLSTSWMPLPTCASGYAVGVLIGDKLHLNPVHAVVQLRPSKRN 213

Query: 383 LALKESKK 406
           L   E KK
Sbjct: 214 LKESELKK 221



 Score =  105 bits (261), Expect(3) = e-129
 Identities = 52/92 (56%), Positives = 69/92 (75%)
 Frame = +3

Query: 1401 EFQAIISEVAVNVHGICVPISSHDNKDYDNIRKVVIDLFLAEGPNARLKKAHIVEAVNLQ 1580
            E QA+I++VAVN+HG+ V  SS DN  YD +RKVVIDLF+AEGP+A+LKKA + EA  LQ
Sbjct: 575  EIQAVINQVAVNIHGVYVLKSSPDNPQYDTLRKVVIDLFMAEGPSAKLKKASVTEAAKLQ 634

Query: 1581 LKGEVVTDAAYKKVLHELCVSQGSGWVLRNDD 1676
            L  + +T+  + KV+ ELC S+ S WVLR+ D
Sbjct: 635  LNRD-ITNVEFLKVMKELCHSEKSAWVLRSGD 665


>ref|XP_004245771.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC5-like [Solanum
            lycopersicum]
          Length = 669

 Score =  241 bits (615), Expect(3) = e-127
 Identities = 143/300 (47%), Positives = 174/300 (58%), Gaps = 3/300 (1%)
 Frame = +1

Query: 451  SKKQ-KAPEPIKDSEEGWVPLKYHSVSSDMAAGYLQKMVAREGSEVHFSMSPDDYLNSLC 627
            SKKQ K+P   KD  E W+ LKYH   SD++A YLQKM   EGS V FSMSP DYLN+ C
Sbjct: 246  SKKQNKSPGIEKDIGEHWLHLKYHGARSDISARYLQKMSMEEGSPVPFSMSPVDYLNAFC 305

Query: 628  PGTFCDSLSSKGPLRRSLLAKPLNERFKTWLLEGPPLHRFDTLKYLAPDDSIXXXXXXXX 807
            PG   D+   K  LR  L   PL ER + WLLEGPP+HRFD L +LAPD+S         
Sbjct: 306  PGRPTDTDRLK-ILRTRLSQLPLEERVRIWLLEGPPIHRFDALMHLAPDNSADEIIRVLQ 364

Query: 808  XXXXXXXGLWVPRTSLVYG--DGIAALARNYVLLLFSKDVIIKDEQLPKSPPLVKAMKDV 981
                   GLWVP++SLVYG   G+  LARN+VL  F+K ++IK     + P  +KA    
Sbjct: 365  IYAQLVQGLWVPKSSLVYGTNSGVEVLARNFVLYEFTKGILIKKSVFGRRPEFLKAATPA 424

Query: 982  LHGLATYRNKLKDWKLKELPDLNFIRLNPAVVKKQQEMWERVEKSIEDSVSGGRNRPGAK 1161
            L  LA  R  L DWKLKE PD  F  L   VV++QQ  WE + K I D + GGR RP  K
Sbjct: 425  LKSLAVERPDLNDWKLKEHPDKKFENLYGDVVREQQATWECLGKQINDVLPGGRTRPTMK 484

Query: 1162 TSKSSAPKNLVESKGSGKLGAGPSSGSTSQNVMPEEVREAIKKALQKLFRSTKTCSFQQI 1341
                  P N      +   G  P+S S  +  M EE+REA+ KALQ++FR+ K CSFQQI
Sbjct: 485  N-----PINRNADITALPSGDKPTSSSLLRTSMSEEIREALPKALQEVFRTYKVCSFQQI 539



 Score =  160 bits (404), Expect(3) = e-127
 Identities = 78/128 (60%), Positives = 98/128 (76%), Gaps = 2/128 (1%)
 Frame = +2

Query: 29  VVREIDVYFAPSVDPETQLYLFQYPLRPLWRPYELDERCQEVRVKPTSAEVEVDLAIDVD 208
           +VREIDV   PS DP TQLY+FQYPL+ +WRPYEL+ERCQEVR++P++AE+EVDLAID+D
Sbjct: 94  IVREIDVCINPSFDPSTQLYVFQYPLKAVWRPYELEERCQEVRLRPSTAEMEVDLAIDLD 153

Query: 209 SKNYDASADPKLQMDKQTLALSW--KPPKANGCTVGVLTGNKLHLNPIHAVIQLRPSMRH 382
           SKN+D  +     + KQ L+ SW   P   +G  VGVL G+KLHLNP+HAV+QLRPS R+
Sbjct: 154 SKNFDRDSVHAATVKKQMLSTSWIPLPTCTSGYAVGVLIGDKLHLNPVHAVVQLRPSKRN 213

Query: 383 LALKESKK 406
           L   E KK
Sbjct: 214 LKESELKK 221



 Score =  104 bits (260), Expect(3) = e-127
 Identities = 51/92 (55%), Positives = 69/92 (75%)
 Frame = +3

Query: 1401 EFQAIISEVAVNVHGICVPISSHDNKDYDNIRKVVIDLFLAEGPNARLKKAHIVEAVNLQ 1580
            E QA+I++VAVN+HG+ V  SS DN  YD +RK+VIDLF+AEGP+A+LKKA + EA  LQ
Sbjct: 575  EIQAVINQVAVNIHGVYVLKSSPDNPQYDTLRKIVIDLFMAEGPSAKLKKASVTEAAKLQ 634

Query: 1581 LKGEVVTDAAYKKVLHELCVSQGSGWVLRNDD 1676
            L  + +T+  + KV+ ELC S+ S WVLR+ D
Sbjct: 635  LNRD-ITNVEFLKVMKELCHSEKSAWVLRSGD 665


>ref|XP_006355442.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC5-like isoform
            X2 [Solanum tuberosum]
          Length = 657

 Score =  235 bits (600), Expect(3) = e-126
 Identities = 138/297 (46%), Positives = 172/297 (57%), Gaps = 2/297 (0%)
 Frame = +1

Query: 457  KQKAPEPIKDSEEGWVPLKYHSVSSDMAAGYLQKMVAREGSEVHFSMSPDDYLNSLCPGT 636
            K+K P      ++ W+ LKYH   SD++A YLQKM   EGS V FSMSP DYLN+  PG 
Sbjct: 238  KEKRPMG-PSKKQHWLHLKYHGARSDISARYLQKMAMEEGSPVPFSMSPVDYLNAFFPGR 296

Query: 637  FCDSLSSKGPLRRSLLAKPLNERFKTWLLEGPPLHRFDTLKYLAPDDSIXXXXXXXXXXX 816
              D+   K  LR  L   PL ER +TWLLEGPP+HRFD LK+LAPD+S            
Sbjct: 297  PTDTDRLK-ILRTRLSQLPLEERVRTWLLEGPPIHRFDALKHLAPDNSADEIIRVLQIYA 355

Query: 817  XXXXGLWVPRTSLVYG--DGIAALARNYVLLLFSKDVIIKDEQLPKSPPLVKAMKDVLHG 990
                GLWVP++SLVYG   G+  LARN+VL  F+K ++IK     + P  +KA    L  
Sbjct: 356  QLVQGLWVPKSSLVYGTNSGVEVLARNFVLYEFTKGILIKKSVFGRRPEFLKAATPALKS 415

Query: 991  LATYRNKLKDWKLKELPDLNFIRLNPAVVKKQQEMWERVEKSIEDSVSGGRNRPGAKTSK 1170
            LA  R  L DWKLKE PD  F  L   VV+++Q  WE + K I D + GGRNRP  K   
Sbjct: 416  LAVERPDLNDWKLKEHPDKKFENLYGDVVREKQATWECLGKQINDVLPGGRNRPTMKN-- 473

Query: 1171 SSAPKNLVESKGSGKLGAGPSSGSTSQNVMPEEVREAIKKALQKLFRSTKTCSFQQI 1341
               P N      +   G  P+S S  +  M EE+REA+ KALQ++FR+ K CSFQQI
Sbjct: 474  ---PLNPNADIPALPSGDKPTSSSLLRTSMSEEIREALPKALQEVFRTYKVCSFQQI 527



 Score =  163 bits (413), Expect(3) = e-126
 Identities = 81/128 (63%), Positives = 99/128 (77%), Gaps = 2/128 (1%)
 Frame = +2

Query: 29  VVREIDVYFAPSVDPETQLYLFQYPLRPLWRPYELDERCQEVRVKPTSAEVEVDLAIDVD 208
           VVREIDV   PS DP TQLY+FQYPLR +WRPYEL+ERCQEVR++P++AE+EVDLAID+D
Sbjct: 94  VVREIDVCINPSFDPSTQLYVFQYPLRAVWRPYELEERCQEVRLRPSTAEMEVDLAIDLD 153

Query: 209 SKNYDASADPKLQMDKQTLALSWK--PPKANGCTVGVLTGNKLHLNPIHAVIQLRPSMRH 382
           SKN+D  +     + KQ L+ SW   P  A+G  VGVL G+KLHLNP+HAV+QLRPS R+
Sbjct: 154 SKNFDRDSVHAATIKKQMLSTSWMPLPTCASGYAVGVLIGDKLHLNPVHAVVQLRPSKRN 213

Query: 383 LALKESKK 406
           L   E KK
Sbjct: 214 LKESELKK 221



 Score =  105 bits (261), Expect(3) = e-126
 Identities = 52/92 (56%), Positives = 69/92 (75%)
 Frame = +3

Query: 1401 EFQAIISEVAVNVHGICVPISSHDNKDYDNIRKVVIDLFLAEGPNARLKKAHIVEAVNLQ 1580
            E QA+I++VAVN+HG+ V  SS DN  YD +RKVVIDLF+AEGP+A+LKKA + EA  LQ
Sbjct: 563  EIQAVINQVAVNIHGVYVLKSSPDNPQYDTLRKVVIDLFMAEGPSAKLKKASVTEAAKLQ 622

Query: 1581 LKGEVVTDAAYKKVLHELCVSQGSGWVLRNDD 1676
            L  + +T+  + KV+ ELC S+ S WVLR+ D
Sbjct: 623  LNRD-ITNVEFLKVMKELCHSEKSAWVLRSGD 653


>emb|CBI17549.3| unnamed protein product [Vitis vinifera]
          Length = 688

 Score =  239 bits (610), Expect(3) = e-125
 Identities = 131/293 (44%), Positives = 177/293 (60%), Gaps = 7/293 (2%)
 Frame = +1

Query: 484  DSEEGWVPLKYHSVSSDMAAGYLQKMVAREGSEVHFSMSPDDYLNSLCP-GTFCDSLSSK 660
            D+ E WVPLKYHS  SD +A YLQKMVA + S + F MSP +Y+NSLCP G   D   SK
Sbjct: 270  DAAESWVPLKYHSSESDFSARYLQKMVAEDNSPIQFLMSPYEYVNSLCPPGVSNDDNRSK 329

Query: 661  GPLRRSLLAKPLNERFKTWLLEGPPLHRFDTLKYLAPDDSIXXXXXXXXXXXXXXXGLWV 840
            G  RR LL+ PL ERFKT L EGPP+HRF  LK+ APD+S+               GLWV
Sbjct: 330  GLSRRFLLSMPLEERFKTLLCEGPPVHRFSALKHFAPDNSVEDVLGVLTKHAHLVQGLWV 389

Query: 841  PRTSLVY--GDGIAALARNYVLLLFSKDVIIKDEQLPKSPPLVKAMKDVLHGLATYRNKL 1014
            P++SL++  G G+A LAR+Y+LLLFSK  +I   Q+     L KA+K  L  LA  R   
Sbjct: 390  PKSSLLFPGGQGVAPLARDYILLLFSKGPLINYSQVDVPGSLNKALKGFLSILAVERPSF 449

Query: 1015 KDWKLKELPDLNFIRLNPAVVKKQQEMWERVEKSIEDSVSGGRNRPGAKTSKSSAPKNLV 1194
            +DWK KE  D++F++L+P +V++Q+ +WE +EK I D + GG  R     +K+S   ++ 
Sbjct: 450  RDWKFKEPTDVSFMKLHPDIVREQRRVWESLEKQITDIIHGGGRR--GPVTKNSGKPSIA 507

Query: 1195 ESKGSGKLGAGPSSGSTS----QNVMPEEVREAIKKALQKLFRSTKTCSFQQI 1341
               G+     G +  +      +  M  E REA+ KAL+++FR  K CSFQ I
Sbjct: 508  NKTGTSTKSDGATRATNGTPVRRTAMSAETREALPKALEEVFRLHKVCSFQLI 560



 Score =  179 bits (454), Expect(3) = e-125
 Identities = 87/131 (66%), Positives = 102/131 (77%), Gaps = 1/131 (0%)
 Frame = +2

Query: 29  VVREIDVYFAPS-VDPETQLYLFQYPLRPLWRPYELDERCQEVRVKPTSAEVEVDLAIDV 205
           VVREIDV+F P   D  T++Y+ QYPLRP WRPYEL ERC EVRVKP SAEVEVDL+IDV
Sbjct: 102 VVREIDVFFTPPPTDDNTKIYVLQYPLRPYWRPYELGERCDEVRVKPASAEVEVDLSIDV 161

Query: 206 DSKNYDASADPKLQMDKQTLALSWKPPKANGCTVGVLTGNKLHLNPIHAVIQLRPSMRHL 385
           DSKNYD  A    +M KQTL+ SWKPP+  G  VGVL GNKLHLNPIHAV+QLRPSM +L
Sbjct: 162 DSKNYDPDAPNAQRMKKQTLSTSWKPPQTTGYVVGVLMGNKLHLNPIHAVVQLRPSMEYL 221

Query: 386 ALKESKKRTDV 418
           +   +K++ +V
Sbjct: 222 SSGGAKRKNNV 232



 Score = 82.8 bits (203), Expect(3) = e-125
 Identities = 45/96 (46%), Positives = 65/96 (67%)
 Frame = +3

Query: 1401 EFQAIISEVAVNVHGICVPISSHDNKDYDNIRKVVIDLFLAEGPNARLKKAHIVEAVNLQ 1580
            E  AIIS+ A  VHG+ V  +S ++ +++ +RKVV+DLF  + PNA+LK+A I+EA  + 
Sbjct: 595  ELHAIISKYATTVHGVYVWKTS-EHSEHNPLRKVVVDLFCGKEPNAKLKRADIMEAAKIA 653

Query: 1581 LKGEVVTDAAYKKVLHELCVSQGSGWVLRNDDSNLK 1688
            LK E+ T   Y KV+ ELC S+GS WVL++ D   K
Sbjct: 654  LKKEITTH-EYNKVVSELCESRGSLWVLKSGDGKPK 688


>ref|XP_002268044.2| PREDICTED: DNA-directed RNA polymerase III subunit RPC5 [Vitis
            vinifera]
          Length = 672

 Score =  236 bits (602), Expect(3) = e-124
 Identities = 129/291 (44%), Positives = 176/291 (60%), Gaps = 7/291 (2%)
 Frame = +1

Query: 490  EEGWVPLKYHSVSSDMAAGYLQKMVAREGSEVHFSMSPDDYLNSLCP-GTFCDSLSSKGP 666
            ++ WVPLKYHS  SD +A YLQKMVA + S + F MSP +Y+NSLCP G   D   SKG 
Sbjct: 256  KQSWVPLKYHSSESDFSARYLQKMVAEDNSPIQFLMSPYEYVNSLCPPGVSNDDNRSKGL 315

Query: 667  LRRSLLAKPLNERFKTWLLEGPPLHRFDTLKYLAPDDSIXXXXXXXXXXXXXXXGLWVPR 846
             RR LL+ PL ERFKT L EGPP+HRF  LK+ APD+S+               GLWVP+
Sbjct: 316  SRRFLLSMPLEERFKTLLCEGPPVHRFSALKHFAPDNSVEDVLGVLTKHAHLVQGLWVPK 375

Query: 847  TSLVY--GDGIAALARNYVLLLFSKDVIIKDEQLPKSPPLVKAMKDVLHGLATYRNKLKD 1020
            +SL++  G G+A LAR+Y+LLLFSK  +I   Q+     L KA+K  L  LA  R   +D
Sbjct: 376  SSLLFPGGQGVAPLARDYILLLFSKGPLINYSQVDVPGSLNKALKGFLSILAVERPSFRD 435

Query: 1021 WKLKELPDLNFIRLNPAVVKKQQEMWERVEKSIEDSVSGGRNRPGAKTSKSSAPKNLVES 1200
            WK KE  D++F++L+P +V++Q+ +WE +EK I D + GG  R     +K+S   ++   
Sbjct: 436  WKFKEPTDVSFMKLHPDIVREQRRVWESLEKQITDIIHGGGRR--GPVTKNSGKPSIANK 493

Query: 1201 KGSGKLGAGPSSGSTS----QNVMPEEVREAIKKALQKLFRSTKTCSFQQI 1341
             G+     G +  +      +  M  E REA+ KAL+++FR  K CSFQ I
Sbjct: 494  TGTSTKSDGATRATNGTPVRRTAMSAETREALPKALEEVFRLHKVCSFQLI 544



 Score =  179 bits (454), Expect(3) = e-124
 Identities = 87/131 (66%), Positives = 102/131 (77%), Gaps = 1/131 (0%)
 Frame = +2

Query: 29  VVREIDVYFAPS-VDPETQLYLFQYPLRPLWRPYELDERCQEVRVKPTSAEVEVDLAIDV 205
           VVREIDV+F P   D  T++Y+ QYPLRP WRPYEL ERC EVRVKP SAEVEVDL+IDV
Sbjct: 102 VVREIDVFFTPPPTDDNTKIYVLQYPLRPYWRPYELGERCDEVRVKPASAEVEVDLSIDV 161

Query: 206 DSKNYDASADPKLQMDKQTLALSWKPPKANGCTVGVLTGNKLHLNPIHAVIQLRPSMRHL 385
           DSKNYD  A    +M KQTL+ SWKPP+  G  VGVL GNKLHLNPIHAV+QLRPSM +L
Sbjct: 162 DSKNYDPDAPNAQRMKKQTLSTSWKPPQTTGYVVGVLMGNKLHLNPIHAVVQLRPSMEYL 221

Query: 386 ALKESKKRTDV 418
           +   +K++ +V
Sbjct: 222 SSGGAKRKNNV 232



 Score = 82.8 bits (203), Expect(3) = e-124
 Identities = 45/96 (46%), Positives = 65/96 (67%)
 Frame = +3

Query: 1401 EFQAIISEVAVNVHGICVPISSHDNKDYDNIRKVVIDLFLAEGPNARLKKAHIVEAVNLQ 1580
            E  AIIS+ A  VHG+ V  +S ++ +++ +RKVV+DLF  + PNA+LK+A I+EA  + 
Sbjct: 579  ELHAIISKYATTVHGVYVWKTS-EHSEHNPLRKVVVDLFCGKEPNAKLKRADIMEAAKIA 637

Query: 1581 LKGEVVTDAAYKKVLHELCVSQGSGWVLRNDDSNLK 1688
            LK E+ T   Y KV+ ELC S+GS WVL++ D   K
Sbjct: 638  LKKEITTH-EYNKVVSELCESRGSLWVLKSGDGKPK 672


>ref|XP_002310208.2| hypothetical protein POPTR_0007s12540g [Populus trichocarpa]
            gi|550334731|gb|EEE90658.2| hypothetical protein
            POPTR_0007s12540g [Populus trichocarpa]
          Length = 667

 Score =  198 bits (504), Expect(3) = e-117
 Identities = 111/290 (38%), Positives = 161/290 (55%), Gaps = 7/290 (2%)
 Frame = +1

Query: 484  DSEEGWVPLKYHSVSSDMAAGYLQKMVAREGSEVHFSMSPDDYLNSLCPGTFCDSLSSKG 663
            D EE W+PLKYH   SD+++ YLQ MVA E S + F+M+P DY++SLCPG   +++   G
Sbjct: 270  DVEESWIPLKYHGSKSDLSSRYLQNMVAPESSTIEFAMNPYDYMSSLCPGISNNNIKLNG 329

Query: 664  PLRRSLLAKPLNERFKTWLLEGPPLHRFDTLKYLAPDDSIXXXXXXXXXXXXXXXGLWVP 843
            P RR LL+ PL ER K   LEGPP+HRF  L++L P+DSI               GLWVP
Sbjct: 330  PSRRVLLSLPLEERIKRLFLEGPPIHRFAALRHLIPNDSIEDLLIVLQEYGQLVQGLWVP 389

Query: 844  RTSLVY-----GDGIAALARNYVLLLFSKDVIIKDEQL--PKSPPLVKAMKDVLHGLATY 1002
            +TSL++      + +   AR+Y+LLLFSK +++   +L  P  P ++K+  ++    A  
Sbjct: 390  KTSLLFPNPKPTEKVKLAARDYILLLFSKSLVVTPSELNVPMKPLILKSFLNI---FAVE 446

Query: 1003 RNKLKDWKLKELPDLNFIRLNPAVVKKQQEMWERVEKSIEDSVSGGRNRPGAKTSKSSAP 1182
            R   KDWK KE  D  F+ L P +V+KQ++ WE + K+I    S   +R G   SK+   
Sbjct: 447  RPSFKDWKFKENVDTLFVELYPDIVRKQEQAWEVMGKNI----SAAFDRAGKSVSKNVIT 502

Query: 1183 KNLVESKGSGKLGAGPSSGSTSQNVMPEEVREAIKKALQKLFRSTKTCSF 1332
            K                     +  M +E REA++KAL K+ ++ K C +
Sbjct: 503  K--------------------PKKTMTDETREALRKALPKVLQTHKVCRY 532



 Score =  184 bits (467), Expect(3) = e-117
 Identities = 90/125 (72%), Positives = 100/125 (80%)
 Frame = +2

Query: 29  VVREIDVYFAPSVDPETQLYLFQYPLRPLWRPYELDERCQEVRVKPTSAEVEVDLAIDVD 208
           VVREIDVY+ PSVDP TQLY+ QYPLRP WRPYELDERC+EVRVKP S EVEVDL+ID D
Sbjct: 111 VVREIDVYYTPSVDPNTQLYVMQYPLRPCWRPYELDERCKEVRVKPESTEVEVDLSID-D 169

Query: 209 SKNYDASADPKLQMDKQTLALSWKPPKANGCTVGVLTGNKLHLNPIHAVIQLRPSMRHLA 388
           +KNYD     +L M KQTL+ SW PP A G  VGVL GNKLHLNPIHAV+QLRPSM +L+
Sbjct: 170 TKNYDPDIASRLNMKKQTLSSSWSPPPATGYAVGVLIGNKLHLNPIHAVVQLRPSMDYLS 229

Query: 389 LKESK 403
              SK
Sbjct: 230 SGNSK 234



 Score = 90.5 bits (223), Expect(3) = e-117
 Identities = 48/95 (50%), Positives = 66/95 (69%), Gaps = 1/95 (1%)
 Frame = +3

Query: 1395 PNEFQAIISEVAVNVHGICVPISSHDNKDYDNI-RKVVIDLFLAEGPNARLKKAHIVEAV 1571
            P E Q +ISEVA N+HG  V  SS ++ D+D + RKVVI LFLA GPNA +KK+ +  A 
Sbjct: 570  PEELQEVISEVATNIHGFYVLKSSPEHPDFDPLSRKVVIGLFLARGPNANIKKSEVQAAA 629

Query: 1572 NLQLKGEVVTDAAYKKVLHELCVSQGSGWVLRNDD 1676
             L+LK E  +++ Y KV+ +LC S+GS WVL++ D
Sbjct: 630  RLELKRE-PSNSEYIKVMTDLCESKGSAWVLKSGD 663


>ref|XP_004232385.1| PREDICTED: uncharacterized protein LOC101252245 [Solanum
            lycopersicum]
          Length = 659

 Score =  229 bits (583), Expect(3) = e-116
 Identities = 136/301 (45%), Positives = 172/301 (57%), Gaps = 4/301 (1%)
 Frame = +1

Query: 451  SKKQ-KAPEPIKDSEEGWVPLKYHSVSSDMAAGYLQKMVAREGSEVHFSMSPDDYLNSLC 627
            SKKQ K P   KD  E W+ LKYH   SD++A +LQKM    GS V FSM P DYLN++C
Sbjct: 245  SKKQNKLPGNYKDIGEHWLHLKYHGTRSDISARHLQKMAMEGGSPVPFSMIPSDYLNAIC 304

Query: 628  PGTFCDSLSSKGPLRRSLLAKPLNERFKTWLLEGPPLHRFDTLKYLAPDDSIXXXXXXXX 807
            P    D +     LR  L  KP  ER +TWLLEGPP+HRFDTLK+LAPD+ +        
Sbjct: 305  PARPTD-IDRLRNLRTRLSQKPFEERVRTWLLEGPPIHRFDTLKHLAPDNPVDEILEVLK 363

Query: 808  XXXXXXXGLWVPRTSLVY--GDGIAALARNYVLLLFSKDVIIKDEQLPKSPPLVKAMKDV 981
                   GLWV ++SLVY   +G+  LARN+VL  F+K  +IK     + P  +KA   V
Sbjct: 364  SCAQLVQGLWVAKSSLVYDTNNGVEVLARNFVLYEFTKSTLIKKSVFGRRPEFLKAATPV 423

Query: 982  LHGLATYRNKLKDWKLKELPDLNFIRLNPAVVKKQQEMWERVEKSIEDSVSGGRNRPGAK 1161
            L  LA  R  L DWKLKELPD  F  L   VV++Q+ +WE + K I D + GGRNRP  K
Sbjct: 424  LKSLAVERPDLDDWKLKELPDKKFENLYGDVVREQEAIWESMGKQINDIMHGGRNRPTLK 483

Query: 1162 TSKSSAPK-NLVESKGSGKLGAGPSSGSTSQNVMPEEVREAIKKALQKLFRSTKTCSFQQ 1338
               +  PK N+     S K    P+  +  +  + EE+R A+ KALQ +FR  K CS  Q
Sbjct: 484  NPLN--PKANIPALSSSDK----PTPTTFLRTSLSEEIRGALPKALQNVFRIHKVCSLLQ 537

Query: 1339 I 1341
            I
Sbjct: 538  I 538



 Score =  134 bits (336), Expect(3) = e-116
 Identities = 65/129 (50%), Positives = 87/129 (67%), Gaps = 1/129 (0%)
 Frame = +2

Query: 29  VVREIDVYFAPSVDPETQLYLFQYPLRPLWRPYELDERCQEVRVKPTSAEVEVDLAIDVD 208
           VVRE+DV+  PS +   + Y+ QYPLR  WRPY LDERCQ+VR++P+SAE+EVDLAID D
Sbjct: 98  VVREVDVWLTPSAN---EFYVLQYPLRSEWRPYGLDERCQDVRLRPSSAEMEVDLAIDFD 154

Query: 209 SKNYDASADPKLQMDKQTLALSWKPPK-ANGCTVGVLTGNKLHLNPIHAVIQLRPSMRHL 385
           SKN+D  +     + KQ ++  W P        VG+  G+K HLNP+HA++QLRPS++H 
Sbjct: 155 SKNFDRDSVHAATIKKQIVSTKWVPSSTCADFAVGIFIGDKFHLNPVHAIVQLRPSLQHR 214

Query: 386 ALKESKKRT 412
              E K  T
Sbjct: 215 KESELKNLT 223



 Score =  105 bits (263), Expect(3) = e-116
 Identities = 54/94 (57%), Positives = 69/94 (73%)
 Frame = +3

Query: 1401 EFQAIISEVAVNVHGICVPISSHDNKDYDNIRKVVIDLFLAEGPNARLKKAHIVEAVNLQ 1580
            E +A+++++AVN+HG+ V  SS DN  YD +RKVVIDLF+AEG NA+LKKA IVEA  LQ
Sbjct: 564  EIEAVVNQIAVNIHGVYVLKSSPDNPQYDALRKVVIDLFMAEGSNAKLKKASIVEAAKLQ 623

Query: 1581 LKGEVVTDAAYKKVLHELCVSQGSGWVLRNDDSN 1682
            L G  VT   ++KV+ ELC S+ S WVL   DSN
Sbjct: 624  L-GRDVTTVEFQKVMKELCRSENSAWVLGISDSN 656


>gb|ABU45193.1| unknown [Petunia integrifolia subsp. inflata]
          Length = 666

 Score =  225 bits (573), Expect(3) = e-114
 Identities = 140/310 (45%), Positives = 172/310 (55%), Gaps = 13/310 (4%)
 Frame = +1

Query: 451  SKKQ-KAPEPIKDSEEGWVPLKYHSVSSDMAAGYLQKMVAREGSEVHFSMSPD------- 606
            SKKQ K P   KD EE WV LKYH   S+++A YLQ+M   EGS + FSMS         
Sbjct: 248  SKKQNKPPGNDKDIEEHWVHLKYHGARSEISARYLQRMAMEEGSPIPFSMSLAFFSVNLI 307

Query: 607  ---DYLNSLCPGTFCDSLSSKGPLRRSLLAKPLNERFKTWLLEGPPLHRFDTLKYLAPDD 777
               DYL +LCPG   D+   K  LR  +   PL+ERF+TWL EGPP+HRF  LK+LA D+
Sbjct: 308  HRVDYLRTLCPGRPNDTDKYKD-LRIRVSQLPLDERFRTWLHEGPPIHRFGALKHLALDN 366

Query: 778  SIXXXXXXXXXXXXXXXGLWVPRTSLVYG--DGIAALARNYVLLLFSKDVIIKDEQLPKS 951
             +               GLWVP++SLVYG  DG   LAR++VL  FSK   IK     + 
Sbjct: 367  PVEEILEVLQRYAQVVQGLWVPKSSLVYGRNDGHEVLARDFVLFEFSKSPFIKQSVFDRK 426

Query: 952  PPLVKAMKDVLHGLATYRNKLKDWKLKELPDLNFIRLNPAVVKKQQEMWERVEKSIEDSV 1131
            P   KA    L  LA  R  L DWKLKE PD  F  L   +VK+QQ  WER+ K I   +
Sbjct: 427  PEFFKAATPALKLLAVERPDLNDWKLKEHPDKEFENLYGDLVKEQQVTWERLGKQIYGLL 486

Query: 1132 SGGRNRPGAKTSKSSAPKNLVESKGSGKLGAGPSSGSTSQNVMPEEVREAIKKALQKLFR 1311
            +GGRNRP  K      P N      +   G  P+  S ++  M E  REA++KALQK+FR
Sbjct: 487  AGGRNRPTMKN-----PSNPSAGIPALPSGGKPTPRSVTRTSMSERTREALQKALQKVFR 541

Query: 1312 STKTCSFQQI 1341
            + K CSFQQI
Sbjct: 542  THKVCSFQQI 551



 Score =  166 bits (420), Expect(3) = e-114
 Identities = 79/128 (61%), Positives = 101/128 (78%), Gaps = 2/128 (1%)
 Frame = +2

Query: 29  VVREIDVYFAPSVDPETQLYLFQYPLRPLWRPYELDERCQEVRVKPTSAEVEVDLAIDVD 208
           VVREID+YF PS+DP TQLY+ Q P+RP+WRPYEL+ERC+EVR++PT+A++EVDLAID D
Sbjct: 96  VVREIDMYFTPSLDPNTQLYVLQSPMRPVWRPYELEERCKEVRLRPTTAQMEVDLAIDFD 155

Query: 209 SKNYDASADPKLQMDKQTLALSW--KPPKANGCTVGVLTGNKLHLNPIHAVIQLRPSMRH 382
           SKN+D  +    +M+KQT++ SW   P   +G  VGVL G+KLHLNPIH V+QLRPS +H
Sbjct: 156 SKNFDRDSIYAEKMEKQTVSTSWIPVPTGTSGYAVGVLIGDKLHLNPIHTVVQLRPSKQH 215

Query: 383 LALKESKK 406
           L   E KK
Sbjct: 216 LKESELKK 223



 Score = 70.9 bits (172), Expect(3) = e-114
 Identities = 36/76 (47%), Positives = 52/76 (68%)
 Frame = +3

Query: 1395 PNEFQAIISEVAVNVHGICVPISSHDNKDYDNIRKVVIDLFLAEGPNARLKKAHIVEAVN 1574
            P E QA+I +VA N+HG  V  SS DN  YD +RKVV++L + EGP+A+LKKA I++A  
Sbjct: 585  PEELQAVIDQVAFNIHGDYVLKSSPDNPQYDALRKVVVELLIGEGPSAKLKKATIMKAAK 644

Query: 1575 LQLKGEVVTDAAYKKV 1622
             +L  + +  A ++KV
Sbjct: 645  SELNRD-IPPAEFQKV 659


>ref|XP_007046991.1| SIN-like family protein, putative isoform 1 [Theobroma cacao]
            gi|508699252|gb|EOX91148.1| SIN-like family protein,
            putative isoform 1 [Theobroma cacao]
          Length = 700

 Score =  210 bits (534), Expect(3) = e-113
 Identities = 125/301 (41%), Positives = 173/301 (57%), Gaps = 5/301 (1%)
 Frame = +1

Query: 454  KKQKAPEPIKDSEEGWVPLKYHSVSSDMAAGYLQKMVAREGSEVHFSMSPDDYLNSLCPG 633
            + Q + E   D +E WVPLKYHS  +D +A YLQ+M+A E   + F+MSP DY++SLCPG
Sbjct: 278  RMQSSTEQKADDKECWVPLKYHSSKNDFSAQYLQRMMAEESCRIQFTMSPYDYVDSLCPG 337

Query: 634  TFCDSLSSKGPLRRSLLAKPLNERFKTWLLEGPPLHRFDTLKYLAPDDSIXXXXXXXXXX 813
               ++  ++GP RR LL+ PL ER K  L EGPP HRF  LK+ APD SI          
Sbjct: 338  A-SNNNKAQGPSRRLLLSIPLEERLKKLLSEGPPFHRFSALKHFAPDASIEDIFEVLQKH 396

Query: 814  XXXXXGLWVPRTSLVY-GDGIAALARNYVLLLFSKDVIIKDEQL-PKSPPLVKAMKDVLH 987
                 GLWVP++SL++  D   +LAR+YVLLLFSK+ II   Q+   SP   + +K  L 
Sbjct: 397  ALLVQGLWVPKSSLLFPEDPYKSLARDYVLLLFSKNPIISLAQVHALSPSRKEEVKGFLK 456

Query: 988  GLATYRNKLKDWKLKELPDLNFIRLNPAVVKKQQEMWERVEKSIEDSVSGGRNRPGAKTS 1167
             LA  R   KDWKLKE  D  F +L P +VK Q+++W   E ++ + +  G     ++T 
Sbjct: 457  ILAIERPSFKDWKLKENADEGFKKLYPDIVKNQEQIWRAGEDNVINHICRGAKGGPSRTK 516

Query: 1168 KSSA---PKNLVESKGSGKLGAGPSSGSTSQNVMPEEVREAIKKALQKLFRSTKTCSFQQ 1338
              +     K +   KG  ++     +G T    M +E REAI KAL+K+F++ K CS Q 
Sbjct: 517  PGTVIKPEKAMNSDKGVRRVAPAVQAGRT----MSDETREAIPKALKKVFQTHKVCSLQL 572

Query: 1339 I 1341
            I
Sbjct: 573  I 573



 Score =  186 bits (473), Expect(3) = e-113
 Identities = 87/127 (68%), Positives = 102/127 (80%)
 Frame = +2

Query: 29  VVREIDVYFAPSVDPETQLYLFQYPLRPLWRPYELDERCQEVRVKPTSAEVEVDLAIDVD 208
           VVREIDV+F PS+D  TQLY+ QYPLRP WRPYELDERC+EVRVKP S EVE+DLA+DVD
Sbjct: 121 VVREIDVFFTPSIDANTQLYVLQYPLRPCWRPYELDERCEEVRVKPASGEVEMDLAVDVD 180

Query: 209 SKNYDASADPKLQMDKQTLALSWKPPKANGCTVGVLTGNKLHLNPIHAVIQLRPSMRHLA 388
           S NYD+    +L+M KQTL+ SW PP+  G  VGVL G+KLHLNPIHAV+QLRPSM HL 
Sbjct: 181 SNNYDSERASRLKMTKQTLSSSWLPPRTTGYAVGVLMGDKLHLNPIHAVVQLRPSMCHLK 240

Query: 389 LKESKKR 409
              SK++
Sbjct: 241 PSVSKRK 247



 Score = 64.3 bits (155), Expect(3) = e-113
 Identities = 38/94 (40%), Positives = 60/94 (63%), Gaps = 1/94 (1%)
 Frame = +3

Query: 1398 NEFQAIISEVAVNVHG-ICVPISSHDNKDYDNIRKVVIDLFLAEGPNARLKKAHIVEAVN 1574
            +E Q ++SEVAV +HG + V  SS ++ +YD +R+VVI+L   +G   +LKKA +  A  
Sbjct: 607  HELQEVVSEVAVELHGGLFVLRSSPEHPEYDPLREVVINLLRVKG---KLKKADVSAAAL 663

Query: 1575 LQLKGEVVTDAAYKKVLHELCVSQGSGWVLRNDD 1676
            L LK E+ ++  Y KV+ + C  + S WVL++ D
Sbjct: 664  LSLKREI-SNNEYNKVMSDFCEYKSSWWVLKSGD 696


>ref|XP_002525112.1| DNA-directed RNA polymerase, putative [Ricinus communis]
            gi|223535571|gb|EEF37239.1| DNA-directed RNA polymerase,
            putative [Ricinus communis]
          Length = 677

 Score =  208 bits (529), Expect(3) = e-113
 Identities = 123/306 (40%), Positives = 173/306 (56%), Gaps = 18/306 (5%)
 Frame = +1

Query: 478  IKDSEEG----------WVPLKYHSVSSDMAAGYLQKMVAREGSEVHFSMSPDDYLNSLC 627
            ++DS EG          W+ LKYH   SD ++ YL+KM+A+E S + F+M+P DY++SLC
Sbjct: 253  LEDSNEGKPIGSSKKQCWISLKYHGSKSDFSSRYLEKMIAQESSPMEFTMTPYDYMSSLC 312

Query: 628  PGTFCDSLSSKGPLRRSLLAKPLNERFKTWLLEGPPLHRFDTLKYLAPDDSIXXXXXXXX 807
            P    +   SKGP RR LL+ PL ER K  +LEGPP+ RF  LK+ APDDS+        
Sbjct: 313  PVASNEKTKSKGPPRRFLLSLPLAERLKKLILEGPPVQRFSVLKHFAPDDSVEDVLKVLQ 372

Query: 808  XXXXXXXGLWVPRTSLVYGDGIAALA-RNYVLLLFSKDVIIKDEQLPKSPPLVKAMKDVL 984
                   GLW P++SL++ D  +    R+YVLLLFSK+++I   Q+     + + +K  L
Sbjct: 373  EYGQLVQGLWAPKSSLLFPDANSKQGIRDYVLLLFSKNLVINSSQVNFPVKIKEEIKSFL 432

Query: 985  HGLATYRNKLKDWKLKELPDLNFIRLNPAVVKKQQEMWERVEKSIEDSVSGGRNRPGAKT 1164
            +  A  R   KDWK KE  D  FI+L P +VKKQ+E W+  EK +    S   +R G  +
Sbjct: 433  NLFAVERPSFKDWKFKEHTDTTFIKLYPDIVKKQEEAWDNTEKRL----SKVFDRSGKAS 488

Query: 1165 SKSSAPK-----NLVESKGSGKLGAGPSSG--STSQNVMPEEVREAIKKALQKLFRSTKT 1323
             K++ PK     N V+   S K     +SG    ++  +  E REA+ KAL K+F+S K 
Sbjct: 489  MKNAIPKPPMVHNTVKHLDSEKSMPKIASGMRRLTKTTITVETREALLKALPKVFQSHKV 548

Query: 1324 CSFQQI 1341
            CSFQ I
Sbjct: 549  CSFQLI 554



 Score =  173 bits (438), Expect(3) = e-113
 Identities = 82/127 (64%), Positives = 98/127 (77%)
 Frame = +2

Query: 29  VVREIDVYFAPSVDPETQLYLFQYPLRPLWRPYELDERCQEVRVKPTSAEVEVDLAIDVD 208
           +VREIDV+F PS+D  TQLY+ QYPLRP WRPYELDERC+EVRVKP S EVEVDL ID D
Sbjct: 117 IVREIDVFFTPSIDSATQLYVMQYPLRPCWRPYELDERCEEVRVKPQSTEVEVDLTID-D 175

Query: 209 SKNYDASADPKLQMDKQTLALSWKPPKANGCTVGVLTGNKLHLNPIHAVIQLRPSMRHLA 388
           S N+D +   K    KQTL+ S+ PP+  G  VGVL GNKLHLNPIHAV+QLRPS+ H+ 
Sbjct: 176 SSNWDPAQASKYNFKKQTLSTSFMPPRVTGYAVGVLIGNKLHLNPIHAVVQLRPSLEHVN 235

Query: 389 LKESKKR 409
             +SK++
Sbjct: 236 SNDSKRK 242



 Score = 77.8 bits (190), Expect(3) = e-113
 Identities = 40/76 (52%), Positives = 51/76 (67%)
 Frame = +3

Query: 1395 PNEFQAIISEVAVNVHGICVPISSHDNKDYDNIRKVVIDLFLAEGPNARLKKAHIVEAVN 1574
            P E Q IIS+VA N+HG  V  SS ++  YD +RKV+IDL LA GPNA+LKKA + EA  
Sbjct: 587  PEELQEIISQVATNIHGFYVLKSSPEHPQYDELRKVIIDLLLARGPNAKLKKAEVFEAAR 646

Query: 1575 LQLKGEVVTDAAYKKV 1622
            L  K + VT+  Y K+
Sbjct: 647  LAFKRD-VTNIEYNKL 661


>ref|XP_004149158.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC5-like [Cucumis
            sativus]
          Length = 702

 Score =  187 bits (476), Expect(3) = e-109
 Identities = 115/303 (37%), Positives = 158/303 (52%), Gaps = 7/303 (2%)
 Frame = +1

Query: 454  KKQKAP--EPIKDSEEGWVPLKYHSVSSDMAAGYLQKMVAREGSEVHFSMSPDDYLNSLC 627
            KKQ  P  E     EE W+PLKY+ + SD++  +LQ MV++  S + FSMSP DY++SLC
Sbjct: 273  KKQTGPSTEVKTRDEECWIPLKYYGLESDLSTRHLQSMVSQTVSPMQFSMSPHDYMDSLC 332

Query: 628  PGTFCDSLSSKGPLRRSLLAKPLNERFKTWLLEGPPLHRFDTLKYLAPDDSIXXXXXXXX 807
            PGT       KGP ++ LL+  L ER K  L EGPP+ RF  LK+ APD           
Sbjct: 333  PGTSTSGNKPKGPSKKYLLSLSLEERIKKLLTEGPPVQRFSALKHYAPDYETEEFIETLQ 392

Query: 808  XXXXXXXGLWVPRT-SLVYGDGIAALARNYVLLLFSKDVIIKDEQLPKSPPLVKAMKDVL 984
                   GLWVP++  L+  DG    AR++VL LFSK+ ++   Q+     L   +K  L
Sbjct: 393  QYAQLVQGLWVPKSLFLIPQDGSGRCARDFVLFLFSKNPVVSSSQINVPKSLRDRVKHFL 452

Query: 985  HGLATYRNKLKDWKLKELPDLNFIRLNPAVVKKQQEMWERVEKSIE--DSVSGGRNRPGA 1158
            +     R   KDWK KE  D  F+  +  + +KQ+E+W  VEK      S+    +   A
Sbjct: 453  NLFGVERPAFKDWKFKEKTDRLFLSNHVRIAEKQEELWNNVEKGFTFLRSIKSVHHANAA 512

Query: 1159 KTSKSSAPKNLVESKGSGKLGAGPSSGS--TSQNVMPEEVREAIKKALQKLFRSTKTCSF 1332
                   PK  +E + S       SS +    +  M +E REA+ KALQKLF++ K CSF
Sbjct: 513  TGKPGVVPK--LEKQVSSDQTTTKSSNAPLNRKGAMSDETREALPKALQKLFQNHKVCSF 570

Query: 1333 QQI 1341
            Q I
Sbjct: 571  QLI 573



 Score =  171 bits (433), Expect(3) = e-109
 Identities = 80/130 (61%), Positives = 96/130 (73%)
 Frame = +2

Query: 29  VVREIDVYFAPSVDPETQLYLFQYPLRPLWRPYELDERCQEVRVKPTSAEVEVDLAIDVD 208
           VVREIDV F PSVD  ++LY+ QYPLRP WRPYE + RC EVRVKP++ EVEVDL +D++
Sbjct: 120 VVREIDVLFTPSVDSNSKLYVLQYPLRPRWRPYEFEGRCDEVRVKPSTGEVEVDLNVDIE 179

Query: 209 SKNYDASADPKLQMDKQTLALSWKPPKANGCTVGVLTGNKLHLNPIHAVIQLRPSMRHLA 388
           S NYD  AD   QM KQTL  SW+PP A    VG+L GNKLHLNP+HAV+QLRPS  HL 
Sbjct: 180 SNNYDNKADGTFQMKKQTLTSSWQPPLATSYAVGLLMGNKLHLNPVHAVVQLRPSFEHLN 239

Query: 389 LKESKKRTDV 418
               K++ +V
Sbjct: 240 SGGPKRKNNV 249



 Score = 89.0 bits (219), Expect(3) = e-109
 Identities = 43/96 (44%), Positives = 62/96 (64%)
 Frame = +3

Query: 1395 PNEFQAIISEVAVNVHGICVPISSHDNKDYDNIRKVVIDLFLAEGPNARLKKAHIVEAVN 1574
            P+E + IIS+VA  +HG+ V  SS ++ +YD +RKVVI L    GP A LKKA ++EA  
Sbjct: 606  PDELKKIISQVATEIHGLYVLTSSPEHPEYDPLRKVVIQLLRGRGPKAVLKKADVLEASK 665

Query: 1575 LQLKGEVVTDAAYKKVLHELCVSQGSGWVLRNDDSN 1682
             +L G  +    Y KV++E+C+S GS W L++ D N
Sbjct: 666  HEL-GRAINSNEYSKVMNEICISHGSSWTLKSGDGN 700


>ref|XP_007046992.1| Transcription regulators,zinc ion binding, putative isoform 2
            [Theobroma cacao] gi|508699253|gb|EOX91149.1|
            Transcription regulators,zinc ion binding, putative
            isoform 2 [Theobroma cacao]
          Length = 588

 Score =  210 bits (534), Expect(3) = e-109
 Identities = 125/301 (41%), Positives = 173/301 (57%), Gaps = 5/301 (1%)
 Frame = +1

Query: 454  KKQKAPEPIKDSEEGWVPLKYHSVSSDMAAGYLQKMVAREGSEVHFSMSPDDYLNSLCPG 633
            + Q + E   D +E WVPLKYHS  +D +A YLQ+M+A E   + F+MSP DY++SLCPG
Sbjct: 181  RMQSSTEQKADDKECWVPLKYHSSKNDFSAQYLQRMMAEESCRIQFTMSPYDYVDSLCPG 240

Query: 634  TFCDSLSSKGPLRRSLLAKPLNERFKTWLLEGPPLHRFDTLKYLAPDDSIXXXXXXXXXX 813
               ++  ++GP RR LL+ PL ER K  L EGPP HRF  LK+ APD SI          
Sbjct: 241  A-SNNNKAQGPSRRLLLSIPLEERLKKLLSEGPPFHRFSALKHFAPDASIEDIFEVLQKH 299

Query: 814  XXXXXGLWVPRTSLVY-GDGIAALARNYVLLLFSKDVIIKDEQL-PKSPPLVKAMKDVLH 987
                 GLWVP++SL++  D   +LAR+YVLLLFSK+ II   Q+   SP   + +K  L 
Sbjct: 300  ALLVQGLWVPKSSLLFPEDPYKSLARDYVLLLFSKNPIISLAQVHALSPSRKEEVKGFLK 359

Query: 988  GLATYRNKLKDWKLKELPDLNFIRLNPAVVKKQQEMWERVEKSIEDSVSGGRNRPGAKTS 1167
             LA  R   KDWKLKE  D  F +L P +VK Q+++W   E ++ + +  G     ++T 
Sbjct: 360  ILAIERPSFKDWKLKENADEGFKKLYPDIVKNQEQIWRAGEDNVINHICRGAKGGPSRTK 419

Query: 1168 KSSA---PKNLVESKGSGKLGAGPSSGSTSQNVMPEEVREAIKKALQKLFRSTKTCSFQQ 1338
              +     K +   KG  ++     +G T    M +E REAI KAL+K+F++ K CS Q 
Sbjct: 420  PGTVIKPEKAMNSDKGVRRVAPAVQAGRT----MSDETREAIPKALKKVFQTHKVCSLQL 475

Query: 1339 I 1341
            I
Sbjct: 476  I 476



 Score =  186 bits (473), Expect(3) = e-109
 Identities = 87/127 (68%), Positives = 102/127 (80%)
 Frame = +2

Query: 29  VVREIDVYFAPSVDPETQLYLFQYPLRPLWRPYELDERCQEVRVKPTSAEVEVDLAIDVD 208
           VVREIDV+F PS+D  TQLY+ QYPLRP WRPYELDERC+EVRVKP S EVE+DLA+DVD
Sbjct: 24  VVREIDVFFTPSIDANTQLYVLQYPLRPCWRPYELDERCEEVRVKPASGEVEMDLAVDVD 83

Query: 209 SKNYDASADPKLQMDKQTLALSWKPPKANGCTVGVLTGNKLHLNPIHAVIQLRPSMRHLA 388
           S NYD+    +L+M KQTL+ SW PP+  G  VGVL G+KLHLNPIHAV+QLRPSM HL 
Sbjct: 84  SNNYDSERASRLKMTKQTLSSSWLPPRTTGYAVGVLMGDKLHLNPIHAVVQLRPSMCHLK 143

Query: 389 LKESKKR 409
              SK++
Sbjct: 144 PSVSKRK 150



 Score = 50.8 bits (120), Expect(3) = e-109
 Identities = 32/83 (38%), Positives = 52/83 (62%), Gaps = 1/83 (1%)
 Frame = +3

Query: 1398 NEFQAIISEVAVNVHG-ICVPISSHDNKDYDNIRKVVIDLFLAEGPNARLKKAHIVEAVN 1574
            +E Q ++SEVAV +HG + V  SS ++ +YD +R+VVI+L   +G   +LKKA +  A  
Sbjct: 510  HELQEVVSEVAVELHGGLFVLRSSPEHPEYDPLREVVINLLRVKG---KLKKADVSAAAL 566

Query: 1575 LQLKGEVVTDAAYKKVLHELCVS 1643
            L LK E +++  Y K L  + ++
Sbjct: 567  LSLKRE-ISNNEYNKALRNMDIA 588


>ref|XP_004164787.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase III
            subunit RPC5-like [Cucumis sativus]
          Length = 702

 Score =  187 bits (476), Expect(3) = e-109
 Identities = 115/303 (37%), Positives = 158/303 (52%), Gaps = 7/303 (2%)
 Frame = +1

Query: 454  KKQKAP--EPIKDSEEGWVPLKYHSVSSDMAAGYLQKMVAREGSEVHFSMSPDDYLNSLC 627
            KKQ  P  E     EE W+PLKY+ + SD++  +LQ MV++  S + FSMSP DY++SLC
Sbjct: 273  KKQTGPSTEVKTRDEECWIPLKYYGLESDLSTRHLQSMVSQTVSPMQFSMSPHDYMDSLC 332

Query: 628  PGTFCDSLSSKGPLRRSLLAKPLNERFKTWLLEGPPLHRFDTLKYLAPDDSIXXXXXXXX 807
            PGT       KGP ++ LL+  L ER K  L EGPP+ RF  LK+ APD           
Sbjct: 333  PGTSTSGNKPKGPSKKYLLSLSLEERIKKLLTEGPPVQRFSALKHYAPDYETEEFIETLQ 392

Query: 808  XXXXXXXGLWVPRT-SLVYGDGIAALARNYVLLLFSKDVIIKDEQLPKSPPLVKAMKDVL 984
                   GLWVP++  L+  DG    AR++VL LFSK+ ++   Q+     L   +K  L
Sbjct: 393  QYAQLVQGLWVPKSLFLIPQDGSGRCARDFVLFLFSKNPVVSSSQINVPKSLRDRVKHFL 452

Query: 985  HGLATYRNKLKDWKLKELPDLNFIRLNPAVVKKQQEMWERVEKSIE--DSVSGGRNRPGA 1158
            +     R   KDWK KE  D  F+  +  + +KQ+E+W  VEK      S+    +   A
Sbjct: 453  NLFGVERPAFKDWKFKEKTDRLFLSNHVRIAEKQEELWNNVEKGFTFLRSIKSVHHANAA 512

Query: 1159 KTSKSSAPKNLVESKGSGKLGAGPSSGS--TSQNVMPEEVREAIKKALQKLFRSTKTCSF 1332
                   PK  +E + S       SS +    +  M +E REA+ KALQKLF++ K CSF
Sbjct: 513  TGKPGVVPK--LEKQVSSDQTTTKSSNAPLNRKGAMSDETREALPKALQKLFQNHKVCSF 570

Query: 1333 QQI 1341
            Q I
Sbjct: 571  QLI 573



 Score =  171 bits (433), Expect(3) = e-109
 Identities = 80/130 (61%), Positives = 96/130 (73%)
 Frame = +2

Query: 29  VVREIDVYFAPSVDPETQLYLFQYPLRPLWRPYELDERCQEVRVKPTSAEVEVDLAIDVD 208
           VVREIDV F PSVD  ++LY+ QYPLRP WRPYE + RC EVRVKP++ EVEVDL +D++
Sbjct: 120 VVREIDVLFTPSVDSNSKLYVLQYPLRPRWRPYEFEGRCDEVRVKPSTGEVEVDLNVDIE 179

Query: 209 SKNYDASADPKLQMDKQTLALSWKPPKANGCTVGVLTGNKLHLNPIHAVIQLRPSMRHLA 388
           S NYD  AD   QM KQTL  SW+PP A    VG+L GNKLHLNP+HAV+QLRPS  HL 
Sbjct: 180 SNNYDNKADGTFQMKKQTLTSSWQPPLATSYAVGLLMGNKLHLNPVHAVVQLRPSFEHLN 239

Query: 389 LKESKKRTDV 418
               K++ +V
Sbjct: 240 SGGPKRKNNV 249



 Score = 88.2 bits (217), Expect(3) = e-109
 Identities = 43/96 (44%), Positives = 61/96 (63%)
 Frame = +3

Query: 1395 PNEFQAIISEVAVNVHGICVPISSHDNKDYDNIRKVVIDLFLAEGPNARLKKAHIVEAVN 1574
            P+E   IIS+VA  +HG+ V  SS ++ +YD +RKVVI L    GP A LKKA ++EA  
Sbjct: 606  PDELXKIISQVATEIHGLYVLTSSPEHPEYDPLRKVVIQLLRGRGPKAVLKKADVLEASK 665

Query: 1575 LQLKGEVVTDAAYKKVLHELCVSQGSGWVLRNDDSN 1682
             +L G  +    Y KV++E+C+S GS W L++ D N
Sbjct: 666  HEL-GRAINSNEYSKVMNEICISHGSSWTLKSGDGN 700


>ref|XP_007046993.1| Transcription regulators,zinc ion binding, putative isoform 3
            [Theobroma cacao] gi|508699254|gb|EOX91150.1|
            Transcription regulators,zinc ion binding, putative
            isoform 3 [Theobroma cacao]
          Length = 736

 Score =  210 bits (534), Expect(3) = e-108
 Identities = 125/301 (41%), Positives = 173/301 (57%), Gaps = 5/301 (1%)
 Frame = +1

Query: 454  KKQKAPEPIKDSEEGWVPLKYHSVSSDMAAGYLQKMVAREGSEVHFSMSPDDYLNSLCPG 633
            + Q + E   D +E WVPLKYHS  +D +A YLQ+M+A E   + F+MSP DY++SLCPG
Sbjct: 278  RMQSSTEQKADDKECWVPLKYHSSKNDFSAQYLQRMMAEESCRIQFTMSPYDYVDSLCPG 337

Query: 634  TFCDSLSSKGPLRRSLLAKPLNERFKTWLLEGPPLHRFDTLKYLAPDDSIXXXXXXXXXX 813
               ++  ++GP RR LL+ PL ER K  L EGPP HRF  LK+ APD SI          
Sbjct: 338  A-SNNNKAQGPSRRLLLSIPLEERLKKLLSEGPPFHRFSALKHFAPDASIEDIFEVLQKH 396

Query: 814  XXXXXGLWVPRTSLVY-GDGIAALARNYVLLLFSKDVIIKDEQL-PKSPPLVKAMKDVLH 987
                 GLWVP++SL++  D   +LAR+YVLLLFSK+ II   Q+   SP   + +K  L 
Sbjct: 397  ALLVQGLWVPKSSLLFPEDPYKSLARDYVLLLFSKNPIISLAQVHALSPSRKEEVKGFLK 456

Query: 988  GLATYRNKLKDWKLKELPDLNFIRLNPAVVKKQQEMWERVEKSIEDSVSGGRNRPGAKTS 1167
             LA  R   KDWKLKE  D  F +L P +VK Q+++W   E ++ + +  G     ++T 
Sbjct: 457  ILAIERPSFKDWKLKENADEGFKKLYPDIVKNQEQIWRAGEDNVINHICRGAKGGPSRTK 516

Query: 1168 KSSA---PKNLVESKGSGKLGAGPSSGSTSQNVMPEEVREAIKKALQKLFRSTKTCSFQQ 1338
              +     K +   KG  ++     +G T    M +E REAI KAL+K+F++ K CS Q 
Sbjct: 517  PGTVIKPEKAMNSDKGVRRVAPAVQAGRT----MSDETREAIPKALKKVFQTHKVCSLQL 572

Query: 1339 I 1341
            I
Sbjct: 573  I 573



 Score =  186 bits (473), Expect(3) = e-108
 Identities = 87/127 (68%), Positives = 102/127 (80%)
 Frame = +2

Query: 29  VVREIDVYFAPSVDPETQLYLFQYPLRPLWRPYELDERCQEVRVKPTSAEVEVDLAIDVD 208
           VVREIDV+F PS+D  TQLY+ QYPLRP WRPYELDERC+EVRVKP S EVE+DLA+DVD
Sbjct: 121 VVREIDVFFTPSIDANTQLYVLQYPLRPCWRPYELDERCEEVRVKPASGEVEMDLAVDVD 180

Query: 209 SKNYDASADPKLQMDKQTLALSWKPPKANGCTVGVLTGNKLHLNPIHAVIQLRPSMRHLA 388
           S NYD+    +L+M KQTL+ SW PP+  G  VGVL G+KLHLNPIHAV+QLRPSM HL 
Sbjct: 181 SNNYDSERASRLKMTKQTLSSSWLPPRTTGYAVGVLMGDKLHLNPIHAVVQLRPSMCHLK 240

Query: 389 LKESKKR 409
              SK++
Sbjct: 241 PSVSKRK 247



 Score = 47.0 bits (110), Expect(3) = e-108
 Identities = 35/127 (27%), Positives = 59/127 (46%), Gaps = 34/127 (26%)
 Frame = +3

Query: 1398 NEFQAIISEVAVNVH-GICVPISSHDNKDYDNIR-------------KVVIDLFLAEGPN 1535
            +E Q ++SEVAV +H G+ V  SS ++ +YD +R               ++ +F  + P+
Sbjct: 607  HELQEVVSEVAVELHGGLFVLRSSPEHPEYDPLRLHKYVQLVFKWEEMFMVSMFFLQNPS 666

Query: 1536 --------------------ARLKKAHIVEAVNLQLKGEVVTDAAYKKVLHELCVSQGSG 1655
                                 +LKKA +  A  L LK E +++  Y KV+ + C  + S 
Sbjct: 667  FSSELFFPCREVVINLLRVKGKLKKADVSAAALLSLKRE-ISNNEYNKVMSDFCEYKSSW 725

Query: 1656 WVLRNDD 1676
            WVL++ D
Sbjct: 726  WVLKSGD 732


>gb|ABU45208.1| unknown [Solanum bulbocastanum]
          Length = 654

 Score =  226 bits (576), Expect(3) = e-108
 Identities = 138/310 (44%), Positives = 174/310 (56%), Gaps = 13/310 (4%)
 Frame = +1

Query: 451  SKKQ-KAPEPIKDSEEGWVPLKYHSVSSDMAAGYLQKMVAREGSEVHFSMSP-------- 603
            SKKQ K P   KD  E W+ LKYH   SD++A +LQKM    GS V FSM P        
Sbjct: 245  SKKQNKPPGNYKDIGEHWLHLKYHGTRSDISARHLQKMAIEGGSPVPFSMIPFFRANLMH 304

Query: 604  -DDYLNSLCPGTFCDSLSSKGPLRRSLLAKPLNERFKTWLLEGPPLHRFDTLKYLAPDDS 780
              DYLN++CP    D +     LR  L  KP  ER +TWLL+GPP+HRFD LK+LAPD+ 
Sbjct: 305  RGDYLNAICPARPTD-IDRLRNLRTRLSQKPFEERVRTWLLQGPPIHRFDALKHLAPDNP 363

Query: 781  IXXXXXXXXXXXXXXXGLWVPRTSLVY--GDGIAALARNYVLLLFSKDVIIKDEQLPKSP 954
            +               GLWVP++SLVY   +G+  LARN+VL  F+K+ +IK     + P
Sbjct: 364  VDEILEVLKSCAQLVQGLWVPKSSLVYDTNNGVEVLARNFVLYEFTKNTLIKKSVFGRRP 423

Query: 955  PLVKAMKDVLHGLATYRNKLKDWKLKELPDLNFIRLNPAVVKKQQEMWERVEKSIEDSVS 1134
              +KA   VL  LA  R  L DWKLKELPD  F  L   VV++QQ +W+ + K I D + 
Sbjct: 424  EFLKAATPVLKSLAVERPDLDDWKLKELPDKKFENLYGDVVREQQAIWDSMGKQINDILH 483

Query: 1135 GGRNRPGAKTSKSSAPK-NLVESKGSGKLGAGPSSGSTSQNVMPEEVREAIKKALQKLFR 1311
            GGRNRP   T K+  PK NL     S K    P+  +  +  M EE+R A+ KALQ +FR
Sbjct: 484  GGRNRP---TMKNPLPKANLPALSSSDK----PTPTTFLRTSMSEEIRGALPKALQNIFR 536

Query: 1312 STKTCSFQQI 1341
              K CS  QI
Sbjct: 537  IHKVCSLLQI 546



 Score =  133 bits (334), Expect(3) = e-108
 Identities = 65/129 (50%), Positives = 89/129 (68%), Gaps = 1/129 (0%)
 Frame = +2

Query: 29  VVREIDVYFAPSVDPETQLYLFQYPLRPLWRPYELDERCQEVRVKPTSAEVEVDLAIDVD 208
           VVR++DV+  PS +   + Y+ QYPLR  WRPY LDE+CQ+VR++P++AE+EVDLAID D
Sbjct: 98  VVRQVDVWLTPSFN---EFYVLQYPLRSEWRPYGLDEKCQDVRLRPSTAEMEVDLAIDFD 154

Query: 209 SKNYDASADPKLQMDKQTLALSWKP-PKANGCTVGVLTGNKLHLNPIHAVIQLRPSMRHL 385
           SKN+D  +     + KQ ++  W P        VG+L G+KLHLNP+HAV+QLRPS++H 
Sbjct: 155 SKNFDRDSVHAATIKKQIVSTKWVPLSTCADFAVGILIGDKLHLNPVHAVVQLRPSLQHR 214

Query: 386 ALKESKKRT 412
              E K  T
Sbjct: 215 KESELKNLT 223



 Score = 82.4 bits (202), Expect(3) = e-108
 Identities = 42/74 (56%), Positives = 56/74 (75%)
 Frame = +3

Query: 1401 EFQAIISEVAVNVHGICVPISSHDNKDYDNIRKVVIDLFLAEGPNARLKKAHIVEAVNLQ 1580
            E +A+++++AVN+HG+ V  SS DN  YD +RKVVIDLF+AEG +A+LKKA IVEA  LQ
Sbjct: 572  EIEAVVNQIAVNIHGVYVLKSSPDNPQYDALRKVVIDLFMAEGSSAKLKKASIVEAAKLQ 631

Query: 1581 LKGEVVTDAAYKKV 1622
            L G  VT   ++KV
Sbjct: 632  L-GRDVTTVEFQKV 644


>gb|EYU44675.1| hypothetical protein MIMGU_mgv1a004477mg [Mimulus guttatus]
          Length = 525

 Score =  231 bits (588), Expect(2) = e-107
 Identities = 135/297 (45%), Positives = 173/297 (58%), Gaps = 5/297 (1%)
 Frame = +1

Query: 451  SKKQKAPEPI-KDSEEGWVPLKYHSVSSDMAAGYLQKMVARE--GSEVHFSMSPDDYLNS 621
            S K + P+P    ++  WVPLKYHS  SDMAA Y++KM+ARE  GS++ FSMS +DY+NS
Sbjct: 253  SVKLEDPQPSGAQTKPDWVPLKYHSARSDMAATYVKKMMAREVEGSQISFSMSSNDYINS 312

Query: 622  LCPGTFCDSLSSKGPLRRSLLAKPLNERFKTWLLEGPPLHRFDTLKYLAPDDSIXXXXXX 801
            LCPGT   S SS                          +HRFD LK+LAPD+SI      
Sbjct: 313  LCPGTSSGSFSSNANT----------------------VHRFDALKHLAPDESIEEVLEV 350

Query: 802  XXXXXXXXXGLWVPRTSLVYG--DGIAALARNYVLLLFSKDVIIKDEQLPKSPPLVKAMK 975
                     GLW P++ LVYG   G+  LAR+YVL LFSK+VII + QLP  P L  AMK
Sbjct: 351  LQDLARLVQGLWFPKSRLVYGIDHGLDVLARDYVLALFSKNVIITNSQLPLRPQLANAMK 410

Query: 976  DVLHGLATYRNKLKDWKLKELPDLNFIRLNPAVVKKQQEMWERVEKSIEDSVSGGRNRPG 1155
            DVL+ LA  R    DWKLK  PD NF++ N ++VKK +E W+ VEK I D  +  +N+  
Sbjct: 411  DVLNVLAVERPAFDDWKLKASPDSNFMKFNQSIVKKHEEEWQGVEKKINDDFNVAKNK-- 468

Query: 1156 AKTSKSSAPKNLVESKGSGKLGAGPSSGSTSQNVMPEEVREAIKKALQKLFRSTKTC 1326
                +S+A K     K S  +     + STS+  M ++VREAIKKALQKLF+S K C
Sbjct: 469  -AAMRSNAAKKPAIPKSSSNVETRTPNVSTSRTAMSDDVREAIKKALQKLFKSVKVC 524



 Score =  187 bits (474), Expect(2) = e-107
 Identities = 88/127 (69%), Positives = 104/127 (81%)
 Frame = +2

Query: 29  VVREIDVYFAPSVDPETQLYLFQYPLRPLWRPYELDERCQEVRVKPTSAEVEVDLAIDVD 208
           VVREIDVY   SVDP T L+++QYPLRPLWRPYELDE+C EVRVKP+   VE+DLA+D  
Sbjct: 116 VVREIDVYLNHSVDPNTCLHVWQYPLRPLWRPYELDEKCDEVRVKPSGEGVEIDLAVDTY 175

Query: 209 SKNYDASADPKLQMDKQTLALSWKPPKANGCTVGVLTGNKLHLNPIHAVIQLRPSMRHLA 388
           SKNYD +ADPKLQM KQTL  +W PP A+G  V VL GNKL+LNPIHAV+QLRPSM+HL 
Sbjct: 176 SKNYDTTADPKLQMQKQTLRSTWMPPHASGQAVAVLVGNKLYLNPIHAVVQLRPSMKHLD 235

Query: 389 LKESKKR 409
            ++SKK+
Sbjct: 236 AEDSKKK 242


>ref|XP_003611964.1| DNA-directed RNA polymerase III subunit RPC5 [Medicago truncatula]
            gi|358344405|ref|XP_003636280.1| DNA-directed RNA
            polymerase III subunit RPC5 [Medicago truncatula]
            gi|355502215|gb|AES83418.1| DNA-directed RNA polymerase
            III subunit RPC5 [Medicago truncatula]
            gi|355513299|gb|AES94922.1| DNA-directed RNA polymerase
            III subunit RPC5 [Medicago truncatula]
          Length = 683

 Score =  190 bits (483), Expect(3) = e-107
 Identities = 115/307 (37%), Positives = 167/307 (54%), Gaps = 11/307 (3%)
 Frame = +1

Query: 454  KKQKAP--EPIKDSEEGWVPLKYHSVSSDMAAGYLQKMVAREGSEVHFSMSPDDYLNSLC 627
            K   AP  E   DS + WVPL+YH   SD+++ Y Q+MV  E S ++F MS  DY+ +LC
Sbjct: 253  KSDGAPSIEQKSDSNQCWVPLEYHGCKSDISSRYFQQMVTHESSPINFEMSTYDYIATLC 312

Query: 628  PGTFCDSLSSKGPLRRSLLAKPLNERFKTWLLEGPPLHRFDTLKYLAPDDSIXXXXXXXX 807
            PG   ++L +KGP +R LL+ P+ +R +T L+EGPPLHRF  +K+ AP+ S         
Sbjct: 313  PGVSSNTL-AKGPSKRYLLSLPVEKRLQTLLIEGPPLHRFSAIKHFAPECSDDELLSVLE 371

Query: 808  XXXXXXXGLWVPRTSLVY-GDGIAALARNYVLLLFSKDVIIKDEQLPK--SPPLVKAMKD 978
                   G WVPR+SL++   GI +LARNY+L+ F K + +K ++L +     L   MK 
Sbjct: 372  KQAQLLRGYWVPRSSLLFPTGGIESLARNYILVRFHKSLTVKSDELRRLGGGELGNRMKH 431

Query: 979  VLHGLATYRNKLKD----WKLKELPDLNFIRLNPAVVKKQQEMWERVEKSIEDSVS--GG 1140
             +   A  +  LK     WK KELPD +FI+  P VVKKQ+E+++ +E  +   +   GG
Sbjct: 432  FVMQFALEKFDLKSKENYWKFKELPDESFIKEFPIVVKKQEEIFKILENEVNSIIGTLGG 491

Query: 1141 RNRPGAKTSKSSAPKNLVESKGSGKLGAGPSSGSTSQNVMPEEVREAIKKALQKLFRSTK 1320
            + +  +  + S     L  S  S                M  E R A+  AL+KLF++ K
Sbjct: 492  KRKLKSAITNSGVNNALFTSTNSDPRATSLGEDPPRSMTMSSETRHALPIALKKLFQTHK 551

Query: 1321 TCSFQQI 1341
             CSFQ I
Sbjct: 552  VCSFQLI 558



 Score =  174 bits (440), Expect(3) = e-107
 Identities = 79/127 (62%), Positives = 105/127 (82%)
 Frame = +2

Query: 29  VVREIDVYFAPSVDPETQLYLFQYPLRPLWRPYELDERCQEVRVKPTSAEVEVDLAIDVD 208
           VVREIDVYF+PS+D +T+LY+ QYPLRP WRPY+LDE+C+EVR+KP ++EVEVDL+ID++
Sbjct: 108 VVREIDVYFSPSIDNDTKLYVMQYPLRPSWRPYDLDEQCEEVRLKPGTSEVEVDLSIDLE 167

Query: 209 SKNYDASADPKLQMDKQTLALSWKPPKANGCTVGVLTGNKLHLNPIHAVIQLRPSMRHLA 388
           S N + +   KL+  KQTL+ +WKPP ANGC VG+L G+KLHL+PIHAV+QLRPS  +L 
Sbjct: 168 SYNVEKATADKLKYTKQTLSTTWKPPPANGCAVGLLMGDKLHLHPIHAVVQLRPSRHYLD 227

Query: 389 LKESKKR 409
              S+K+
Sbjct: 228 SGGSEKK 234



 Score = 74.7 bits (182), Expect(3) = e-107
 Identities = 43/95 (45%), Positives = 59/95 (62%)
 Frame = +3

Query: 1398 NEFQAIISEVAVNVHGICVPISSHDNKDYDNIRKVVIDLFLAEGPNARLKKAHIVEAVNL 1577
            +E +AI+ EVA ++HG C  + S  N   D  R VVID+    GPN +LKKA I+EA   
Sbjct: 592  DELKAILGEVACDIHG-CYVLKSAQN---DPFRDVVIDMLRGSGPNGKLKKAEILEAARR 647

Query: 1578 QLKGEVVTDAAYKKVLHELCVSQGSGWVLRNDDSN 1682
            +L G  V +  Y K + ELCVS+GS WVL++ D +
Sbjct: 648  KL-GRDVPNNEYIKAVSELCVSKGSFWVLKSGDGS 681


>gb|ABU45189.1| unknown [Capsicum frutescens]
          Length = 629

 Score =  197 bits (500), Expect(3) = e-106
 Identities = 121/290 (41%), Positives = 155/290 (53%), Gaps = 14/290 (4%)
 Frame = +1

Query: 457  KQKAPEPIKDSEEGWVPLKYHSVSSDMAAGYLQKMVAREGSEVHFSMSPD---------D 609
            + K P   KD  + W+ LKYH   SD++A  LQKM   EGS+V FSMSP          D
Sbjct: 266  QNKPPGNYKDVGKDWLHLKYHGARSDISARCLQKMAMEEGSQVPFSMSPSFSANLIHRVD 325

Query: 610  YLNSLCPGTFCDSLSSKGPLRRSLLAKPLNERFKTWLLEGPPLHRFDTLKYLAPDDSIXX 789
            YLN+LCPG   D+   K  LR  L   PL +R KTWLLEGPP+HRFD LK+LAPD ++  
Sbjct: 326  YLNALCPGRPADTDKYKN-LRTRLSQLPLEDRVKTWLLEGPPIHRFDALKHLAPDTTVDE 384

Query: 790  XXXXXXXXXXXXXGLWVPRTSLVYG--DGIAALARNYVLLLFSKDVIIKDEQLPKSPPLV 963
                         GLWVP++SLVYG   GI  LAR++VL  F+K  +IK     + P  +
Sbjct: 385  ILRVLQLSAQLVQGLWVPKSSLVYGKNSGIDVLARDFVLYQFTKSTLIKKSAFGRRPEFI 444

Query: 964  KAMKDVLHGLATYRNKLKDWKLKELPDLNFIRLNPAVVKKQQEMWERVEKSIEDSVSGGR 1143
            KA    L  LA  R  L DWKLKE PD  F  L   VV++QQ  WERV K I D + G +
Sbjct: 445  KAATQSLKSLAIERPDLNDWKLKEHPDKKFENLYGDVVREQQATWERVGKQINDILPGNK 504

Query: 1144 ---NRPGAKTSKSSAPKNLVESKGSGKLGAGPSSGSTSQNVMPEEVREAI 1284
                 P     + S P+ L   K   + GA   + + +    P E ++A+
Sbjct: 505  PIMKNPLNPKEEHSFPQIL---KSFPQKGAPKKATTEAVGDPPPEEKQAV 551



 Score =  156 bits (395), Expect(3) = e-106
 Identities = 75/128 (58%), Positives = 96/128 (75%), Gaps = 2/128 (1%)
 Frame = +2

Query: 29  VVREIDVYFAPSVDPETQLYLFQYPLRPLWRPYELDERCQEVRVKPTSAEVEVDLAIDVD 208
           VVREIDV++ PS DP ++LY FQYPLR +WRPYEL+ERCQEVR++ ++ E+EVDLAID D
Sbjct: 111 VVREIDVWYTPSFDPVSKLYAFQYPLRAVWRPYELEERCQEVRLRASTEEMEVDLAIDFD 170

Query: 209 SKNYDASADPKLQMDKQTLALSWK--PPKANGCTVGVLTGNKLHLNPIHAVIQLRPSMRH 382
           S N+D  +     M KQTL+ SW   P   +G  VG+L G+KLHLNP+HAV+QLRP+ +H
Sbjct: 171 SNNFDRDSVHAATMKKQTLSTSWMPLPTCTSGYAVGILIGDKLHLNPVHAVVQLRPARQH 230

Query: 383 LALKESKK 406
           L   E KK
Sbjct: 231 LKESELKK 238



 Score = 84.0 bits (206), Expect(3) = e-106
 Identities = 45/76 (59%), Positives = 56/76 (73%)
 Frame = +3

Query: 1395 PNEFQAIISEVAVNVHGICVPISSHDNKDYDNIRKVVIDLFLAEGPNARLKKAHIVEAVN 1574
            P E QA+I +VAVN+HG+ V  SS DN  YD  RKVVIDLF+A+GP+A+LKKA I+ A N
Sbjct: 545  PEEKQAVIDQVAVNIHGVNVLKSSPDNPQYDAFRKVVIDLFMAKGPSAKLKKASILAAAN 604

Query: 1575 LQLKGEVVTDAAYKKV 1622
            LQL G  VT   ++KV
Sbjct: 605  LQL-GRDVTIVEFQKV 619


>gb|EXB77882.1| DNA-directed RNA polymerase III subunit RPC5 [Morus notabilis]
          Length = 732

 Score =  193 bits (491), Expect(3) = e-104
 Identities = 118/301 (39%), Positives = 163/301 (54%), Gaps = 6/301 (1%)
 Frame = +1

Query: 451  SKKQKAPEPIKDSEEGWVPLKYHSVSSDMAAGYLQKMVAREGSEVHFSMSPDDYLNSLCP 630
            S KQK  +     EEGWVPLKYH   S+ +  YL+KM  +E S + F+MSP DYLNSLCP
Sbjct: 271  SVKQKIAD-----EEGWVPLKYHGSESESSVRYLRKMAVQESSPLQFTMSPYDYLNSLCP 325

Query: 631  GTFCDSLSSKGPLRRSLLAKPLNERFKTWLLEG-PPLHRFDTLKYLAPDDSIXXXXXXXX 807
            G+  +    KGP RR+LL+ PL ER K+ L EG  P+HRF  LK+ APD +         
Sbjct: 326  GSCKNGNEPKGPSRRALLSLPLEERIKSLLCEGLAPVHRFSVLKHFAPDCTTKEILDALQ 385

Query: 808  XXXXXXXGLWVPRTSLVYG----DGIAALARNYVLLLFSKDVIIKDEQLPKSPPLVKAMK 975
                   GLW P++SL+ G     G   +AR+YVLLLF K+ +     L     L  A+ 
Sbjct: 386  NHALLVQGLWAPKSSLLLGTSKETGAQRIARDYVLLLFWKNPVFSFSSLHFPSSLKTAVN 445

Query: 976  DVLHGLATYRNKLKDWKLKELPDLNFIRLNPAVVKKQQEMWERVEKSIEDSVSGGRNRPG 1155
              L+ L   R  +KDWK K   D++FI+  P VVKKQ+E+W  +E+ I +    G++  G
Sbjct: 446  KFLNILGVERPSVKDWKFKGQTDISFIKNYPDVVKKQEEVWGDLERDIMNMFGDGKSGRG 505

Query: 1156 AKTSKSSAPKNLVESKGSGKLGAGPSSGSTSQNVMPEEVREAI-KKALQKLFRSTKTCSF 1332
             K   +S P   V+   S K     +S       +P+++RE +  K L K+ +  K CS 
Sbjct: 506  PK--NTSIPSRPVKPLNSNKGVPKGTSEVVGGKKIPDDIREVLCSKILPKVIQEHKVCSL 563

Query: 1333 Q 1335
            Q
Sbjct: 564  Q 564



 Score =  181 bits (458), Expect(3) = e-104
 Identities = 86/130 (66%), Positives = 101/130 (77%)
 Frame = +2

Query: 29  VVREIDVYFAPSVDPETQLYLFQYPLRPLWRPYELDERCQEVRVKPTSAEVEVDLAIDVD 208
           VVREIDV+F P +D  TQLY+ QYPLRP WRPYELDERC+EVRVKP S+EVE+DL++DVD
Sbjct: 110 VVREIDVFFNPKIDEGTQLYVLQYPLRPSWRPYELDERCEEVRVKPASSEVEMDLSLDVD 169

Query: 209 SKNYDASADPKLQMDKQTLALSWKPPKANGCTVGVLTGNKLHLNPIHAVIQLRPSMRHLA 388
           SKNYD     +L M KQTL  SW  P+A    VGVL GNKLHLN IHAV+QLRPS++HL 
Sbjct: 170 SKNYDPDCGDRLNMTKQTLCCSWDQPRATRYAVGVLMGNKLHLNRIHAVMQLRPSLKHLI 229

Query: 389 LKESKKRTDV 418
              SKK+ +V
Sbjct: 230 SAGSKKKNNV 239



 Score = 56.2 bits (134), Expect(3) = e-104
 Identities = 29/70 (41%), Positives = 41/70 (58%)
 Frame = +3

Query: 1395 PNEFQAIISEVAVNVHGICVPISSHDNKDYDNIRKVVIDLFLAEGPNARLKKAHIVEAVN 1574
            P E   ++ E A+N+HG+ V  SS ++  YD  R VVIDL    G  A+LKKA I +A  
Sbjct: 598  PGELVKLLDETAINIHGLYVLKSSAEHPQYDPFRNVVIDLLRQNGLAAKLKKAEIFDAAK 657

Query: 1575 LQLKGEVVTD 1604
              LK +V ++
Sbjct: 658  NALKRDVTSN 667