BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Mentha28_contig00001092
         (712 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AHL27584.1| RNA-dependent RNA polymerase 1 [Salvia miltiorrhiza]   386   e-105
emb|CAA09697.1| RNA-directed RNA polymerase [Nicotiana tabacum]       345   7e-93
emb|CAA09896.1| RNA-directed RNA polymerase [Petunia x hybrida]       345   7e-93
gb|ABV24845.1| RNA-dependent RNA polymerase [Nicotiana glutinosa...   343   4e-92
gb|EYU28878.1| hypothetical protein MIMGU_mgv1a000505mg [Mimulus...   341   1e-91
gb|ABO93006.1| putative RNA-dependent RNA-polymerase [Solanum tu...   333   3e-89
gb|ABI34311.1| RNA dependent RNA polymerase family protein [Sola...   333   3e-89
ref|XP_006366109.1| PREDICTED: RNA-dependent RNA polymerase 1-li...   330   3e-88
gb|ABO92977.1| putative RNA-dependent RNA-polymerase [Solanum tu...   330   4e-88
gb|AAT38699.2| RNA dependent RNA polymerase family protein [Sola...   330   4e-88
ref|XP_006366108.1| PREDICTED: RNA-dependent RNA polymerase 1-li...   329   5e-88
gb|AHL27585.1| RNA-dependent RNA polymerase 2 [Salvia miltiorrhiza]   327   3e-87
ref|NP_001234319.1| RNA-directed RNA polymerase [Solanum lycoper...   326   4e-87
gb|EXB53859.1| RNA-dependent RNA polymerase 1 [Morus notabilis]       323   3e-86
ref|XP_006469265.1| PREDICTED: RNA-dependent RNA polymerase 1-li...   320   2e-85
ref|XP_002281315.1| PREDICTED: RNA-dependent RNA polymerase 1-li...   320   2e-85
emb|CAN82568.1| hypothetical protein VITISV_040047 [Vitis vinifera]   320   2e-85
gb|ABQ45352.1| RNA-dependent RNA polymerase [Gossypium hirsutum]      319   5e-85
gb|ABE01124.1| RNA-dependent RNA polymerase [Gossypium hirsutum]      319   5e-85
ref|XP_007045552.1| RNA-dependent RNA polymerase 1 isoform 1 [Th...   319   7e-85

>gb|AHL27584.1| RNA-dependent RNA polymerase 1 [Salvia miltiorrhiza]
          Length = 1118

 Score =  386 bits (991), Expect = e-105
 Identities = 191/249 (76%), Positives = 209/249 (83%), Gaps = 14/249 (5%)
 Frame = +3

Query: 3    LVSRVKAMEALDIMSLGENTFILKEMLNCGYEPNEEPFLSMMLQTFVSSQLLDVRTKSRI 182
            LV  +KA+EALD+MSLGENT+ILKEML CGY+P+EEPFL+MMLQTF SSQLLD+RTKSRI
Sbjct: 575  LVDPLKALEALDLMSLGENTYILKEMLKCGYKPDEEPFLAMMLQTFRSSQLLDLRTKSRI 634

Query: 183  FIPRARNMMGCLDETGTLDYGQVFVQFSGAGQRRFFEESIKFXXXXXXXXXXXXX----- 347
            FIP+ARNMMGCLDETGTL+YGQVFVQFSGAGQRRF+EESIKF                  
Sbjct: 635  FIPQARNMMGCLDETGTLEYGQVFVQFSGAGQRRFYEESIKFDEYTSTDHNYIVKGKVAV 694

Query: 348  ---------DLRVLTAIDVPALHHMVDCIVFPKKGMRPHPNECSGSDLDGDVYFVCWDSE 500
                     DLRVL AIDVPALHHMV+CIVFP+KG RPHPNECSGSDLDGD+Y VCWD +
Sbjct: 695  AKNPCLHPGDLRVLEAIDVPALHHMVNCIVFPQKGTRPHPNECSGSDLDGDIYIVCWDPD 754

Query: 501  LIPPKQVSPMDYDPAPATRLSHEVTIEEVQEYFTNYILNESLGIIANAHIVFADKEPSMA 680
            LIPPKQ  PMDY+PAPATRL HEVTI+EVQEYFTNYILNESLGIIANAH VFADKEPSMA
Sbjct: 755  LIPPKQFDPMDYNPAPATRLDHEVTIQEVQEYFTNYILNESLGIIANAHTVFADKEPSMA 814

Query: 681  LSPPCVELA 707
            LS PC+ELA
Sbjct: 815  LSSPCLELA 823


>emb|CAA09697.1| RNA-directed RNA polymerase [Nicotiana tabacum]
          Length = 1116

 Score =  345 bits (886), Expect = 7e-93
 Identities = 166/245 (67%), Positives = 196/245 (80%), Gaps = 14/245 (5%)
 Frame = +3

Query: 15   VKAMEALDIMSLGENTFILKEMLNCGYEPNEEPFLSMMLQTFVSSQLLDVRTKSRIFIPR 194
            +KA EAL++MS GENT ILKEMLNCGY P+ EPFLSMMLQTF +S+LLD+RT++RIFIP 
Sbjct: 641  LKAQEALELMSPGENTNILKEMLNCGYMPDAEPFLSMMLQTFRASKLLDLRTRTRIFIPN 700

Query: 195  ARNMMGCLDETGTLDYGQVFVQFSGAGQRRFFEES--------------IKFXXXXXXXX 332
             R MMGCLDE+ TL+YGQVFVQFSGAG+R+FFEES              +K         
Sbjct: 701  GRTMMGCLDESRTLEYGQVFVQFSGAGRRQFFEESHPFNDSGSANCDFILKGNVVVAKNP 760

Query: 333  XXXXXDLRVLTAIDVPALHHMVDCIVFPKKGMRPHPNECSGSDLDGDVYFVCWDSELIPP 512
                 D+RVL A+DVPALHHMVDC+VFP+KG RPHPNECSGSDLDGD+YFVCWD +LIPP
Sbjct: 761  CLHPGDIRVLRAVDVPALHHMVDCVVFPQKGKRPHPNECSGSDLDGDIYFVCWDPDLIPP 820

Query: 513  KQVSPMDYDPAPATRLSHEVTIEEVQEYFTNYILNESLGIIANAHIVFADKEPSMALSPP 692
            +QV  MDY PAP T+L H+VTIEEV+EYFTNYI+N+SLGIIANAH+VFAD+EP MA+S P
Sbjct: 821  RQVQSMDYTPAPTTQLDHDVTIEEVEEYFTNYIINDSLGIIANAHVVFADREPDMAMSDP 880

Query: 693  CVELA 707
            C +LA
Sbjct: 881  CKQLA 885


>emb|CAA09896.1| RNA-directed RNA polymerase [Petunia x hybrida]
          Length = 775

 Score =  345 bits (886), Expect = 7e-93
 Identities = 163/245 (66%), Positives = 199/245 (81%), Gaps = 14/245 (5%)
 Frame = +3

Query: 15   VKAMEALDIMSLGENTFILKEMLNCGYEPNEEPFLSMMLQTFVSSQLLDVRTKSRIFIPR 194
            +KA EALD+MS GENT ILKEMLNCGY P+ EPFLSMMLQTF +S+LLD+RT++RIFIP+
Sbjct: 332  LKAQEALDLMSPGENTNILKEMLNCGYLPDAEPFLSMMLQTFRASKLLDLRTRTRIFIPK 391

Query: 195  ARNMMGCLDETGTLDYGQVFVQFSGAGQRRFFEES--------------IKFXXXXXXXX 332
             R+MMGCLDE+ TL+YGQVFVQF+GAG R+F+EES              +K         
Sbjct: 392  GRSMMGCLDESRTLEYGQVFVQFTGAGGRQFYEESHHFNDSGSANYNFILKGNVVVAKNP 451

Query: 333  XXXXXDLRVLTAIDVPALHHMVDCIVFPKKGMRPHPNECSGSDLDGDVYFVCWDSELIPP 512
                 D+RVL A+DVPALHHMVDC+VFP+KG RPHPNECSGSDLDGD+YFVCWD +LIPP
Sbjct: 452  CLHPGDIRVLKAVDVPALHHMVDCVVFPQKGKRPHPNECSGSDLDGDIYFVCWDPDLIPP 511

Query: 513  KQVSPMDYDPAPATRLSHEVTIEEVQEYFTNYILNESLGIIANAHIVFADKEPSMALSPP 692
            +QV PMDY PAP+ +L H+VTIEEV+EYFTNY++N+ LG+IANAH+VFAD+EP+MA+S P
Sbjct: 512  RQVQPMDYTPAPSIQLDHDVTIEEVEEYFTNYMVNDGLGVIANAHVVFADREPNMAMSDP 571

Query: 693  CVELA 707
            C+ELA
Sbjct: 572  CIELA 576


>gb|ABV24845.1| RNA-dependent RNA polymerase [Nicotiana glutinosa]
            gi|209420668|gb|ACI46982.1| RNA-dependent RNA polymerase
            [Nicotiana glutinosa]
          Length = 1117

 Score =  343 bits (879), Expect = 4e-92
 Identities = 163/245 (66%), Positives = 195/245 (79%), Gaps = 14/245 (5%)
 Frame = +3

Query: 15   VKAMEALDIMSLGENTFILKEMLNCGYEPNEEPFLSMMLQTFVSSQLLDVRTKSRIFIPR 194
            +KA EAL++MS GENT ILKEMLNCGY P+ EPFLSMMLQTF +S+LLD+RT+SRIFIP 
Sbjct: 642  LKAQEALELMSPGENTNILKEMLNCGYMPDAEPFLSMMLQTFRASKLLDLRTRSRIFIPN 701

Query: 195  ARNMMGCLDETGTLDYGQVFVQFSGAGQRRFFEESIKFXXXXXXXXXXXXX--------- 347
             R MMGCLDE+ TL+YGQVFVQF+G G+R+F+EES  F                      
Sbjct: 702  GRTMMGCLDESRTLEYGQVFVQFTGTGRRQFYEESHPFNDSGSTNCDFILEGNVVVAKNP 761

Query: 348  -----DLRVLTAIDVPALHHMVDCIVFPKKGMRPHPNECSGSDLDGDVYFVCWDSELIPP 512
                 D+RVL A+DVPALHHMVDC+VFP+KG RPHPNECSGSDLDGD+YFVCWD +L+PP
Sbjct: 762  CLHPGDIRVLRAVDVPALHHMVDCVVFPQKGKRPHPNECSGSDLDGDIYFVCWDPDLVPP 821

Query: 513  KQVSPMDYDPAPATRLSHEVTIEEVQEYFTNYILNESLGIIANAHIVFADKEPSMALSPP 692
            +Q  PMDY PAP+T+L H+VTIEEV+EYFTNYI+N+SLGIIANAH+VFAD+EP MA+S P
Sbjct: 822  RQFQPMDYTPAPSTQLDHDVTIEEVEEYFTNYIVNDSLGIIANAHVVFADREPDMAMSDP 881

Query: 693  CVELA 707
            C +LA
Sbjct: 882  CKQLA 886


>gb|EYU28878.1| hypothetical protein MIMGU_mgv1a000505mg [Mimulus guttatus]
          Length = 1110

 Score =  341 bits (875), Expect = 1e-91
 Identities = 165/247 (66%), Positives = 195/247 (78%), Gaps = 12/247 (4%)
 Frame = +3

Query: 3    LVSRVKAMEALDIMSLGENTFILKEMLNCGYEPNEEPFLSMMLQTFVSSQLLDVRTKSRI 182
            L+  ++A EALD+MS GENT ILKEML CGYEP+ EPFLSMMLQTF +S+LLD+R K+R+
Sbjct: 636  LIDPMRAQEALDLMSPGENTHILKEMLKCGYEPDGEPFLSMMLQTFRASKLLDLRVKARV 695

Query: 183  FIPRARNMMGCLDETGTLDYGQVFVQFSGAGQRRFFEES------------IKFXXXXXX 326
            FIP+AR MMGCLDETG L YGQVFV++SGA +R  F++S            ++       
Sbjct: 696  FIPKARQMMGCLDETGILKYGQVFVRYSGAVKRGLFDDSYDNSTANERFDPVRGKVVVAK 755

Query: 327  XXXXXXXDLRVLTAIDVPALHHMVDCIVFPKKGMRPHPNECSGSDLDGDVYFVCWDSELI 506
                   D+RVLTA+DVP L HMVDC+VFPK G RPHPNECSGSDLDGD+YFVCWDS+LI
Sbjct: 756  NPCLHPGDVRVLTAVDVPELRHMVDCVVFPKNGKRPHPNECSGSDLDGDIYFVCWDSDLI 815

Query: 507  PPKQVSPMDYDPAPATRLSHEVTIEEVQEYFTNYILNESLGIIANAHIVFADKEPSMALS 686
            P KQV PMDY+PAP TRL H+VTIEEV++YFTNYI+N+SLGIIANAH VFADKEP MALS
Sbjct: 816  PTKQVEPMDYNPAPTTRLDHDVTIEEVEDYFTNYIVNDSLGIIANAHTVFADKEPLMALS 875

Query: 687  PPCVELA 707
             PC+ELA
Sbjct: 876  EPCLELA 882


>gb|ABO93006.1| putative RNA-dependent RNA-polymerase [Solanum tuberosum]
          Length = 1065

 Score =  333 bits (855), Expect = 3e-89
 Identities = 160/245 (65%), Positives = 192/245 (78%), Gaps = 14/245 (5%)
 Frame = +3

Query: 15   VKAMEALDIMSLGENTFILKEMLNCGYEPNEEPFLSMMLQTFVSSQLLDVRTKSRIFIPR 194
            +KA EAL++MS GENT ILK MLNCGY P+ EPFLSMMLQTF +S+LLD+RTKSRIFIP 
Sbjct: 638  LKAQEALELMSPGENTNILKAMLNCGYMPDAEPFLSMMLQTFRASKLLDLRTKSRIFIPN 697

Query: 195  ARNMMGCLDETGTLDYGQVFVQFSGAGQRRFFEES--------------IKFXXXXXXXX 332
             R MMGCLDE+ TL+YGQVFVQF+GAG R F E+               +K         
Sbjct: 698  GRAMMGCLDESRTLEYGQVFVQFTGAGHREFSEDLHPFNNSRSTNCNFILKGNVVVAKNP 757

Query: 333  XXXXXDLRVLTAIDVPALHHMVDCIVFPKKGMRPHPNECSGSDLDGDVYFVCWDSELIPP 512
                 D+RVL A+DVPALHHMVDC+VFP+KG RPHPNECSGSDLDGD+YFVCWD ++IPP
Sbjct: 758  CLHPGDIRVLRAVDVPALHHMVDCVVFPQKGKRPHPNECSGSDLDGDIYFVCWDQDMIPP 817

Query: 513  KQVSPMDYDPAPATRLSHEVTIEEVQEYFTNYILNESLGIIANAHIVFADKEPSMALSPP 692
            +QV PM+Y PAP+ +L H+VTIEEV+EYFTNYI+N+SLGII+NAH+VFAD+EP MA+S P
Sbjct: 818  RQVQPMEYPPAPSIQLDHDVTIEEVEEYFTNYIVNDSLGIISNAHVVFADREPDMAMSDP 877

Query: 693  CVELA 707
            C +LA
Sbjct: 878  CKKLA 882


>gb|ABI34311.1| RNA dependent RNA polymerase family protein [Solanum demissum]
          Length = 963

 Score =  333 bits (855), Expect = 3e-89
 Identities = 160/245 (65%), Positives = 192/245 (78%), Gaps = 14/245 (5%)
 Frame = +3

Query: 15   VKAMEALDIMSLGENTFILKEMLNCGYEPNEEPFLSMMLQTFVSSQLLDVRTKSRIFIPR 194
            +KA EAL++MS GENT ILK MLNCGY P+ EPFLSMMLQTF +S+LLD+RTKSRIFIP 
Sbjct: 487  LKAQEALELMSPGENTNILKAMLNCGYMPDAEPFLSMMLQTFRASKLLDLRTKSRIFIPN 546

Query: 195  ARNMMGCLDETGTLDYGQVFVQFSGAGQRRFFEES--------------IKFXXXXXXXX 332
             R MMGCLDE+ TL+YGQVFVQF+GAG R F E+               +K         
Sbjct: 547  GRAMMGCLDESRTLEYGQVFVQFTGAGHREFSEDLHPFNNSRSTNCNFILKGNVVVAKNP 606

Query: 333  XXXXXDLRVLTAIDVPALHHMVDCIVFPKKGMRPHPNECSGSDLDGDVYFVCWDSELIPP 512
                 D+RVL A+DVPALHHMVDC+VFP+KG RPHPNECSGSDLDGD+YFVCWD ++IPP
Sbjct: 607  CLHPGDIRVLRAVDVPALHHMVDCVVFPQKGKRPHPNECSGSDLDGDIYFVCWDQDMIPP 666

Query: 513  KQVSPMDYDPAPATRLSHEVTIEEVQEYFTNYILNESLGIIANAHIVFADKEPSMALSPP 692
            +QV PM+Y PAP+ +L H+VTIEEV+EYFTNYI+N+SLGII+NAH+VFAD+EP MA+S P
Sbjct: 667  RQVQPMEYPPAPSIQLDHDVTIEEVEEYFTNYIVNDSLGIISNAHVVFADREPDMAMSDP 726

Query: 693  CVELA 707
            C +LA
Sbjct: 727  CKKLA 731


>ref|XP_006366109.1| PREDICTED: RNA-dependent RNA polymerase 1-like isoform X1 [Solanum
            tuberosum] gi|565401229|ref|XP_006366110.1| PREDICTED:
            RNA-dependent RNA polymerase 1-like isoform X2 [Solanum
            tuberosum]
          Length = 1115

 Score =  330 bits (846), Expect = 3e-88
 Identities = 159/245 (64%), Positives = 191/245 (77%), Gaps = 14/245 (5%)
 Frame = +3

Query: 15   VKAMEALDIMSLGENTFILKEMLNCGYEPNEEPFLSMMLQTFVSSQLLDVRTKSRIFIPR 194
            +KA EAL++MS GENT ILK MLNCGY P+ EPFLSMMLQTF +S+LLD+RTKSRIFIP 
Sbjct: 639  LKAQEALELMSPGENTNILKAMLNCGYMPDAEPFLSMMLQTFRASKLLDLRTKSRIFIPN 698

Query: 195  ARNMMGCLDETGTLDYGQVFVQFSGAGQRRFFEES--------------IKFXXXXXXXX 332
             R MMGCLDE+ TL+YGQVFVQF+G+G R F E+               +K         
Sbjct: 699  GRLMMGCLDESRTLEYGQVFVQFTGSGHREFSEDLHPFNNSRSTNCNFILKGNVVVAKNP 758

Query: 333  XXXXXDLRVLTAIDVPALHHMVDCIVFPKKGMRPHPNECSGSDLDGDVYFVCWDSELIPP 512
                 D+RVL A+DVPALHHMVDC+VFP+KG RPHPNECSGSDLDGD+YFVCWD ++IPP
Sbjct: 759  CLHPGDIRVLRAVDVPALHHMVDCVVFPQKGKRPHPNECSGSDLDGDIYFVCWDQDMIPP 818

Query: 513  KQVSPMDYDPAPATRLSHEVTIEEVQEYFTNYILNESLGIIANAHIVFADKEPSMALSPP 692
            +QV  M+Y PAP+ +L H+VTIEEV+EYFTNYI+N+SLGIIANAH+VFAD+EP MA+S P
Sbjct: 819  RQVQAMEYPPAPSIQLDHDVTIEEVEEYFTNYIVNDSLGIIANAHVVFADREPDMAMSDP 878

Query: 693  CVELA 707
            C +LA
Sbjct: 879  CKKLA 883


>gb|ABO92977.1| putative RNA-dependent RNA-polymerase [Solanum tuberosum]
          Length = 1115

 Score =  330 bits (845), Expect = 4e-88
 Identities = 159/245 (64%), Positives = 190/245 (77%), Gaps = 14/245 (5%)
 Frame = +3

Query: 15   VKAMEALDIMSLGENTFILKEMLNCGYEPNEEPFLSMMLQTFVSSQLLDVRTKSRIFIPR 194
            +KA EAL++MS GENT ILK MLNCGY P+ EPFLSMMLQTF +S+LLD+RT+SRIFIP 
Sbjct: 639  LKAQEALELMSPGENTNILKAMLNCGYMPDAEPFLSMMLQTFRASKLLDLRTRSRIFIPN 698

Query: 195  ARNMMGCLDETGTLDYGQVFVQFSGAGQRRFFEES--------------IKFXXXXXXXX 332
             R MMGCLDE+ TL+YGQVFVQF+GAG R F E+               +K         
Sbjct: 699  GRAMMGCLDESRTLEYGQVFVQFTGAGHREFSEDLHPFNNSRSTNCNFILKGNVVVAKNP 758

Query: 333  XXXXXDLRVLTAIDVPALHHMVDCIVFPKKGMRPHPNECSGSDLDGDVYFVCWDSELIPP 512
                 D+RVL A+DVPALHHMVDC+VFP+KG RPHPNECSGSDLDGD+YFVCWD ++IPP
Sbjct: 759  CLHPGDIRVLRAVDVPALHHMVDCVVFPQKGKRPHPNECSGSDLDGDIYFVCWDQDMIPP 818

Query: 513  KQVSPMDYDPAPATRLSHEVTIEEVQEYFTNYILNESLGIIANAHIVFADKEPSMALSPP 692
            +QV  M+Y PAP+ +L H VTIEEV+EYFTNYI+N+SLGIIANAH+VFAD+EP MA+S P
Sbjct: 819  RQVQAMEYPPAPSIQLDHNVTIEEVEEYFTNYIVNDSLGIIANAHVVFADREPDMAMSDP 878

Query: 693  CVELA 707
            C +LA
Sbjct: 879  CKKLA 883


>gb|AAT38699.2| RNA dependent RNA polymerase family protein [Solanum demissum]
          Length = 963

 Score =  330 bits (845), Expect = 4e-88
 Identities = 159/245 (64%), Positives = 190/245 (77%), Gaps = 14/245 (5%)
 Frame = +3

Query: 15   VKAMEALDIMSLGENTFILKEMLNCGYEPNEEPFLSMMLQTFVSSQLLDVRTKSRIFIPR 194
            +KA EAL++MS GENT ILK MLNCGY P+ EPFLSMMLQTF +S+LLD+RT+SRIFIP 
Sbjct: 487  LKAQEALELMSPGENTNILKAMLNCGYMPDAEPFLSMMLQTFRASKLLDLRTRSRIFIPN 546

Query: 195  ARNMMGCLDETGTLDYGQVFVQFSGAGQRRFFEES--------------IKFXXXXXXXX 332
             R MMGCLDE+ TL+YGQVFVQF+GAG R F E+               +K         
Sbjct: 547  GRAMMGCLDESRTLEYGQVFVQFTGAGHREFSEDLHPFNNSRSTNCNFILKGNVVVAKNP 606

Query: 333  XXXXXDLRVLTAIDVPALHHMVDCIVFPKKGMRPHPNECSGSDLDGDVYFVCWDSELIPP 512
                 D+RVL A+DVPALHHMVDC+VFP+KG RPHPNECSGSDLDGD+YFVCWD ++IPP
Sbjct: 607  CLHPGDIRVLRAVDVPALHHMVDCVVFPQKGKRPHPNECSGSDLDGDIYFVCWDQDMIPP 666

Query: 513  KQVSPMDYDPAPATRLSHEVTIEEVQEYFTNYILNESLGIIANAHIVFADKEPSMALSPP 692
            +QV  M+Y PAP+ +L H VTIEEV+EYFTNYI+N+SLGIIANAH+VFAD+EP MA+S P
Sbjct: 667  RQVQAMEYPPAPSIQLDHNVTIEEVEEYFTNYIVNDSLGIIANAHVVFADREPDMAMSDP 726

Query: 693  CVELA 707
            C +LA
Sbjct: 727  CKKLA 731


>ref|XP_006366108.1| PREDICTED: RNA-dependent RNA polymerase 1-like [Solanum tuberosum]
          Length = 1115

 Score =  329 bits (844), Expect = 5e-88
 Identities = 158/245 (64%), Positives = 191/245 (77%), Gaps = 14/245 (5%)
 Frame = +3

Query: 15   VKAMEALDIMSLGENTFILKEMLNCGYEPNEEPFLSMMLQTFVSSQLLDVRTKSRIFIPR 194
            +KA EAL++MS GENT ILK MLNCGY P+ EPFLSMMLQTF +S+LLD+RT+SRIFIP 
Sbjct: 639  LKAQEALELMSPGENTNILKAMLNCGYMPDAEPFLSMMLQTFRASKLLDLRTRSRIFIPN 698

Query: 195  ARNMMGCLDETGTLDYGQVFVQFSGAGQRRFFEES--------------IKFXXXXXXXX 332
             R MMGCLDE+ TL+YGQVFVQF+G+G R F E+               +K         
Sbjct: 699  GRAMMGCLDESRTLEYGQVFVQFTGSGHREFSEDLHPFNNSRSTNCNFILKGNVVVAKNP 758

Query: 333  XXXXXDLRVLTAIDVPALHHMVDCIVFPKKGMRPHPNECSGSDLDGDVYFVCWDSELIPP 512
                 D+RVL A+DVPALHHMVDC+VFP+KG RPHPNECSGSDLDGD+YFVCWD ++IPP
Sbjct: 759  CLHPGDIRVLRAVDVPALHHMVDCVVFPQKGKRPHPNECSGSDLDGDIYFVCWDQDMIPP 818

Query: 513  KQVSPMDYDPAPATRLSHEVTIEEVQEYFTNYILNESLGIIANAHIVFADKEPSMALSPP 692
            +QV  M+Y PAP+ +L H+VTIEEV+EYFTNYI+N+SLGIIANAH+VFAD+EP MA+S P
Sbjct: 819  RQVQAMEYPPAPSIQLDHDVTIEEVEEYFTNYIVNDSLGIIANAHVVFADREPDMAMSDP 878

Query: 693  CVELA 707
            C +LA
Sbjct: 879  CKKLA 883


>gb|AHL27585.1| RNA-dependent RNA polymerase 2 [Salvia miltiorrhiza]
          Length = 1101

 Score =  327 bits (837), Expect = 3e-87
 Identities = 161/238 (67%), Positives = 185/238 (77%), Gaps = 3/238 (1%)
 Frame = +3

Query: 3    LVSRVKAMEALDIMSLGENTFILKEMLNCGYEPNEEPFLSMMLQTFVSSQLLDVRTKSRI 182
            LV  +KA +ALD+MS GENT ILKEML CGY+P+EEPFLSMMLQTF  ++LLD+R K+RI
Sbjct: 642  LVDPLKAQDALDLMSPGENTNILKEMLKCGYKPDEEPFLSMMLQTFRLAKLLDLRVKARI 701

Query: 183  FIPRARNMMGCLDETGTLDYGQVFVQFSGAGQRRFFEES---IKFXXXXXXXXXXXXXDL 353
            FIP+AR MMGC+DETGTL+YGQVFVQFSG G    +E +   +               D+
Sbjct: 702  FIPQARQMMGCMDETGTLEYGQVFVQFSGTGSSGLYEGTKYTVTGKVAVAKNPCLHPGDV 761

Query: 354  RVLTAIDVPALHHMVDCIVFPKKGMRPHPNECSGSDLDGDVYFVCWDSELIPPKQVSPMD 533
            RVL A+DVP L HMVDC+VFP+KG RPHPNECSGSDLDGD YFVCWD ELIPP Q SPM 
Sbjct: 762  RVLRAVDVPELQHMVDCVVFPRKGRRPHPNECSGSDLDGDRYFVCWDPELIPPNQESPMT 821

Query: 534  YDPAPATRLSHEVTIEEVQEYFTNYILNESLGIIANAHIVFADKEPSMALSPPCVELA 707
            Y+PAP T L H VTIEEV+EYFTNYI+N+SLGIIANAH  FADKE   ALS PC+ELA
Sbjct: 822  YNPAPNTLLDHNVTIEEVEEYFTNYIVNDSLGIIANAHTAFADKERDGALSSPCLELA 879


>ref|NP_001234319.1| RNA-directed RNA polymerase [Solanum lycopersicum]
            gi|4038592|emb|CAA71421.1| RNA-directed RNA polymerase
            [Solanum lycopersicum]
          Length = 1114

 Score =  326 bits (836), Expect = 4e-87
 Identities = 156/245 (63%), Positives = 191/245 (77%), Gaps = 14/245 (5%)
 Frame = +3

Query: 15   VKAMEALDIMSLGENTFILKEMLNCGYEPNEEPFLSMMLQTFVSSQLLDVRTKSRIFIPR 194
            +KA EAL++MS GENT ILK MLNCGY+P+ EPFLSMMLQTF +S+LLD+RT+SRIFIP 
Sbjct: 639  LKAQEALELMSPGENTNILKAMLNCGYKPDAEPFLSMMLQTFRASKLLDLRTRSRIFIPN 698

Query: 195  ARNMMGCLDETGTLDYGQVFVQFSGAGQRRFFEES--------------IKFXXXXXXXX 332
             R MMGCLDE+ TL+YGQVFVQF+GAG   F ++               +K         
Sbjct: 699  GRTMMGCLDESRTLEYGQVFVQFTGAGHGEFSDDLHPFNNSRSTNSNFILKGNVVVAKNP 758

Query: 333  XXXXXDLRVLTAIDVPALHHMVDCIVFPKKGMRPHPNECSGSDLDGDVYFVCWDSELIPP 512
                 D+RVL A++V ALHHMVDC+VFP+KG RPHPNECSGSDLDGD+YFVCWD ++IPP
Sbjct: 759  CLHPGDIRVLKAVNVRALHHMVDCVVFPQKGKRPHPNECSGSDLDGDIYFVCWDQDMIPP 818

Query: 513  KQVSPMDYDPAPATRLSHEVTIEEVQEYFTNYILNESLGIIANAHIVFADKEPSMALSPP 692
            +QV PM+Y PAP+ +L H+VTIEEV+EYFTNYI+N+SLGIIANAH+VFAD+EP MA+S P
Sbjct: 819  RQVQPMEYPPAPSIQLDHDVTIEEVEEYFTNYIVNDSLGIIANAHVVFADREPDMAMSDP 878

Query: 693  CVELA 707
            C +LA
Sbjct: 879  CKKLA 883


>gb|EXB53859.1| RNA-dependent RNA polymerase 1 [Morus notabilis]
          Length = 1133

 Score =  323 bits (828), Expect = 3e-86
 Identities = 158/244 (64%), Positives = 183/244 (75%), Gaps = 13/244 (5%)
 Frame = +3

Query: 15   VKAMEALDIMSLGENTFILKEMLNCGYEPNEEPFLSMMLQTFVSSQLLDVRTKSRIFIPR 194
            ++A EALD+MS GE T ILKE+L+CGY+PN EPFLSMMLQ F +S+L ++RTK+RI IP 
Sbjct: 654  LRAREALDLMSAGETTNILKELLSCGYQPNAEPFLSMMLQAFRASKLQELRTKTRISIPD 713

Query: 195  ARNMMGCLDETGTLDYGQVFVQFSGAGQRRFFEESIKFXXXXXXXXXXXXX--------- 347
             R MMGCLDE  TL+YG+VFVQFSG   R FFE+S                         
Sbjct: 714  GRAMMGCLDEMRTLEYGEVFVQFSGITHRPFFEDSFMLGGTGSGQNYIVVGRVVVAKNPC 773

Query: 348  ----DLRVLTAIDVPALHHMVDCIVFPKKGMRPHPNECSGSDLDGDVYFVCWDSELIPPK 515
                D+RVL A++VPALHHMVDC+VFP+KG RPHPNECSGSDLDGD+YFVCWD ELIP K
Sbjct: 774  LHPGDVRVLRAVNVPALHHMVDCVVFPQKGSRPHPNECSGSDLDGDIYFVCWDDELIPQK 833

Query: 516  QVSPMDYDPAPATRLSHEVTIEEVQEYFTNYILNESLGIIANAHIVFADKEPSMALSPPC 695
            Q  PMDY PAP TRL H+V IEEVQEYFTNYI+N+SLGIIANAH  FADKEPS A+SP C
Sbjct: 834  QFEPMDYSPAPTTRLDHDVRIEEVQEYFTNYIVNDSLGIIANAHTAFADKEPSKAMSPSC 893

Query: 696  VELA 707
            +ELA
Sbjct: 894  IELA 897


>ref|XP_006469265.1| PREDICTED: RNA-dependent RNA polymerase 1-like [Citrus sinensis]
          Length = 1132

 Score =  320 bits (821), Expect = 2e-85
 Identities = 158/248 (63%), Positives = 189/248 (76%), Gaps = 13/248 (5%)
 Frame = +3

Query: 3    LVSRVKAMEALDIMSLGENTFILKEMLNCGYEPNEEPFLSMMLQTFVSSQLLDVRTKSRI 182
            L   +KA EAL++MS GENT ILKE+L CGY+P+ EPFLSMMLQTF +S+LL++RTK+RI
Sbjct: 653  LTDPLKAQEALELMSPGENTNILKELLICGYKPDAEPFLSMMLQTFRASKLLELRTKTRI 712

Query: 183  FIPRARNMMGCLDETGTLDYGQVFVQFSGAGQRRFFEESIKFXXXXXXXXXXXXX----- 347
            FIP  R+MMGCLDET TL+YGQVFVQ SGAG R+   ES  F                  
Sbjct: 713  FIPNGRSMMGCLDETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVA 772

Query: 348  --------DLRVLTAIDVPALHHMVDCIVFPKKGMRPHPNECSGSDLDGDVYFVCWDSEL 503
                    D+RVL A++VPALHHMVDC+VFP+KGMRPHPNECSGSDLDGD+YFVCWD EL
Sbjct: 773  KNPCLHPGDVRVLKAVNVPALHHMVDCVVFPQKGMRPHPNECSGSDLDGDIYFVCWDDEL 832

Query: 504  IPPKQVSPMDYDPAPATRLSHEVTIEEVQEYFTNYILNESLGIIANAHIVFADKEPSMAL 683
            IPP+Q  PMDY PA + +L H+V IE+V+EYFTNYI+N+SLGIIANAH VFAD+EP  A 
Sbjct: 833  IPPQQDPPMDYTPAQSMQLDHDVQIEDVEEYFTNYIVNDSLGIIANAHTVFADREPHKAR 892

Query: 684  SPPCVELA 707
            S PC++LA
Sbjct: 893  SEPCLQLA 900


>ref|XP_002281315.1| PREDICTED: RNA-dependent RNA polymerase 1-like [Vitis vinifera]
          Length = 1109

 Score =  320 bits (821), Expect = 2e-85
 Identities = 154/245 (62%), Positives = 188/245 (76%), Gaps = 14/245 (5%)
 Frame = +3

Query: 15   VKAMEALDIMSLGENTFILKEMLNCGYEPNEEPFLSMMLQTFVSSQLLDVRTKSRIFIPR 194
            ++A EAL++MS GENT ILKEML CGY+P+ EPFLSMMLQTF +++LL++RTK+RIF+P 
Sbjct: 640  LRAQEALELMSPGENTNILKEMLMCGYKPDAEPFLSMMLQTFRAAKLLELRTKTRIFVPN 699

Query: 195  ARNMMGCLDETGTLDYGQVFVQFSGAGQRRFFEESIKFXXXXXXXXXXXXX--------- 347
             R+MMGCLDET TL+YG+VFVQ SG G R+ F +S+ F                      
Sbjct: 700  GRSMMGCLDETRTLEYGEVFVQISGTGGRQSFGDSLMFYGSGSHHDNFILEGKVVVAKNP 759

Query: 348  -----DLRVLTAIDVPALHHMVDCIVFPKKGMRPHPNECSGSDLDGDVYFVCWDSELIPP 512
                 D+R+L+A+DVPALHHMVDC+VFP+KGMRPHP+ECSGSDLDGD+YFVCWD +LIPP
Sbjct: 760  CLHPGDVRILSAVDVPALHHMVDCVVFPQKGMRPHPDECSGSDLDGDIYFVCWDHDLIPP 819

Query: 513  KQVSPMDYDPAPATRLSHEVTIEEVQEYFTNYILNESLGIIANAHIVFADKEPSMALSPP 692
            +Q++PMDY PAP   L H+V IEEV+EYFTNYI N+ LGIIANAH VFADKE   AL PP
Sbjct: 820  RQINPMDYTPAPTKVLDHDVMIEEVEEYFTNYIGNDKLGIIANAHTVFADKEYDKALCPP 879

Query: 693  CVELA 707
            C ELA
Sbjct: 880  CKELA 884


>emb|CAN82568.1| hypothetical protein VITISV_040047 [Vitis vinifera]
          Length = 697

 Score =  320 bits (821), Expect = 2e-85
 Identities = 154/245 (62%), Positives = 188/245 (76%), Gaps = 14/245 (5%)
 Frame = +3

Query: 15  VKAMEALDIMSLGENTFILKEMLNCGYEPNEEPFLSMMLQTFVSSQLLDVRTKSRIFIPR 194
           ++A EAL++MS GENT ILKEML CGY+P+ EPFLSMMLQTF +++LL++RTK+RIF+P 
Sbjct: 184 LRAQEALELMSPGENTNILKEMLMCGYKPDAEPFLSMMLQTFRAAKLLELRTKTRIFVPN 243

Query: 195 ARNMMGCLDETGTLDYGQVFVQFSGAGQRRFFEESIKFXXXXXXXXXXXXX--------- 347
            R+MMGCLDET TL+YG+VFVQ SG G R+ F +S+ F                      
Sbjct: 244 GRSMMGCLDETRTLEYGEVFVQISGTGGRQSFGDSLMFYGSGSHHDNFILEGKVVVAKNP 303

Query: 348 -----DLRVLTAIDVPALHHMVDCIVFPKKGMRPHPNECSGSDLDGDVYFVCWDSELIPP 512
                D+R+L+A+DVPALHHMVDC+VFP+KGMRPHP+ECSGSDLDGD+YFVCWD +LIPP
Sbjct: 304 CLHPGDVRILSAVDVPALHHMVDCVVFPQKGMRPHPDECSGSDLDGDIYFVCWDHDLIPP 363

Query: 513 KQVSPMDYDPAPATRLSHEVTIEEVQEYFTNYILNESLGIIANAHIVFADKEPSMALSPP 692
           +Q++PMDY PAP   L H+V IEEV+EYFTNYI N+ LGIIANAH VFADKE   AL PP
Sbjct: 364 RQINPMDYTPAPTKVLDHDVMIEEVEEYFTNYIGNDKLGIIANAHTVFADKEYDKALCPP 423

Query: 693 CVELA 707
           C ELA
Sbjct: 424 CKELA 428


>gb|ABQ45352.1| RNA-dependent RNA polymerase [Gossypium hirsutum]
          Length = 1110

 Score =  319 bits (818), Expect = 5e-85
 Identities = 154/236 (65%), Positives = 189/236 (80%), Gaps = 1/236 (0%)
 Frame = +3

Query: 3    LVSRVKAMEALDIMSLGENTFILKEMLNCGYEPNEEPFLSMMLQTFVSSQLLDVRTKSRI 182
            L   ++A EAL++MS GENT ILKEML CGY+P+ EPFLSMML+TF +S+LL++RTK+RI
Sbjct: 642  LTDPLEAQEALELMSPGENTNILKEMLLCGYKPDAEPFLSMMLETFRASKLLELRTKARI 701

Query: 183  FIPRARNMMGCLDETGTLDYGQVFVQFSGA-GQRRFFEESIKFXXXXXXXXXXXXXDLRV 359
            F+ + R+MMGCLDET TL+YGQVFVQFSG+  +RRF    ++              D+RV
Sbjct: 702  FVQKGRSMMGCLDETRTLNYGQVFVQFSGSRSERRFI---VQGKVIVAKNPCLHPGDVRV 758

Query: 360  LTAIDVPALHHMVDCIVFPKKGMRPHPNECSGSDLDGDVYFVCWDSELIPPKQVSPMDYD 539
            L A++VP LHHMVDC+VFP+KG RPHPNECSGSDLDGDVYFVCWD ELIP KQ+ PMDY 
Sbjct: 759  LRAVNVPDLHHMVDCVVFPQKGTRPHPNECSGSDLDGDVYFVCWDPELIPYKQIDPMDYS 818

Query: 540  PAPATRLSHEVTIEEVQEYFTNYILNESLGIIANAHIVFADKEPSMALSPPCVELA 707
            PA  T+L HEVTIEE++EYFTNYI+N+SLGII+NAH  FAD+EP  A+S PC+ELA
Sbjct: 819  PASTTKLDHEVTIEEIEEYFTNYIVNDSLGIISNAHTAFADREPDKAMSRPCLELA 874


>gb|ABE01124.1| RNA-dependent RNA polymerase [Gossypium hirsutum]
          Length = 1110

 Score =  319 bits (818), Expect = 5e-85
 Identities = 154/236 (65%), Positives = 189/236 (80%), Gaps = 1/236 (0%)
 Frame = +3

Query: 3    LVSRVKAMEALDIMSLGENTFILKEMLNCGYEPNEEPFLSMMLQTFVSSQLLDVRTKSRI 182
            L   ++A EAL++MS GENT ILKEML CGY+P+ EPFLSMML+TF +S+LL++RTK+RI
Sbjct: 642  LTDPLEAQEALELMSPGENTNILKEMLLCGYKPDAEPFLSMMLETFRASKLLELRTKARI 701

Query: 183  FIPRARNMMGCLDETGTLDYGQVFVQFSGA-GQRRFFEESIKFXXXXXXXXXXXXXDLRV 359
            F+ + R+MMGCLDET TL+YGQVFVQFSG+  +RRF    ++              D+RV
Sbjct: 702  FVQKGRSMMGCLDETRTLNYGQVFVQFSGSRSERRFI---VQGKVIVAKNPCLHPGDVRV 758

Query: 360  LTAIDVPALHHMVDCIVFPKKGMRPHPNECSGSDLDGDVYFVCWDSELIPPKQVSPMDYD 539
            L A++VP LHHMVDC+VFP+KG RPHPNECSGSDLDGDVYFVCWD ELIP KQ+ PMDY 
Sbjct: 759  LRAVNVPDLHHMVDCVVFPQKGTRPHPNECSGSDLDGDVYFVCWDPELIPYKQIDPMDYS 818

Query: 540  PAPATRLSHEVTIEEVQEYFTNYILNESLGIIANAHIVFADKEPSMALSPPCVELA 707
            PA  T+L HEVTIEE++EYFTNYI+N+SLGII+NAH  FAD+EP  A+S PC+ELA
Sbjct: 819  PASTTKLDHEVTIEEIEEYFTNYIVNDSLGIISNAHTAFADREPGKAMSRPCLELA 874


>ref|XP_007045552.1| RNA-dependent RNA polymerase 1 isoform 1 [Theobroma cacao]
            gi|590697846|ref|XP_007045553.1| RNA-dependent RNA
            polymerase 1 isoform 1 [Theobroma cacao]
            gi|590697850|ref|XP_007045554.1| RNA-dependent RNA
            polymerase 1 isoform 1 [Theobroma cacao]
            gi|508709487|gb|EOY01384.1| RNA-dependent RNA polymerase
            1 isoform 1 [Theobroma cacao] gi|508709488|gb|EOY01385.1|
            RNA-dependent RNA polymerase 1 isoform 1 [Theobroma
            cacao] gi|508709489|gb|EOY01386.1| RNA-dependent RNA
            polymerase 1 isoform 1 [Theobroma cacao]
          Length = 1109

 Score =  319 bits (817), Expect = 7e-85
 Identities = 158/236 (66%), Positives = 185/236 (78%), Gaps = 1/236 (0%)
 Frame = +3

Query: 3    LVSRVKAMEALDIMSLGENTFILKEMLNCGYEPNEEPFLSMMLQTFVSSQLLDVRTKSRI 182
            L   +KA EAL++MS GENT ILKEML CGYEP+ EPFLSMMLQTF +S+LL++RTKSRI
Sbjct: 642  LTDPLKAQEALELMSPGENTNILKEMLLCGYEPDAEPFLSMMLQTFRASKLLELRTKSRI 701

Query: 183  FIPRARNMMGCLDETGTLDYGQVFVQFSGA-GQRRFFEESIKFXXXXXXXXXXXXXDLRV 359
            F+   R+MMGCLDET TLDYGQVFVQ SG+  ++RF    ++              D+RV
Sbjct: 702  FVANGRSMMGCLDETRTLDYGQVFVQVSGSRSEQRFI---VQGKVVVAKNPCLHPGDVRV 758

Query: 360  LTAIDVPALHHMVDCIVFPKKGMRPHPNECSGSDLDGDVYFVCWDSELIPPKQVSPMDYD 539
            LTA++VP LHHMVDC+VFP+KG RPHPNECSGSDLDGD+YFVCWD ELIP KQ+ PMDY 
Sbjct: 759  LTAVNVPDLHHMVDCVVFPQKGSRPHPNECSGSDLDGDIYFVCWDPELIPSKQIPPMDYS 818

Query: 540  PAPATRLSHEVTIEEVQEYFTNYILNESLGIIANAHIVFADKEPSMALSPPCVELA 707
            PAP   L HEVTIEEV+EYFTNYI+N+SLGIIANAH VFAD+EP  A+S  C  LA
Sbjct: 819  PAPTKPLEHEVTIEEVEEYFTNYIVNDSLGIIANAHTVFADREPRKAMSSECKWLA 874