BLASTX nr result
ID: Mentha28_contig00000379
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Mentha28_contig00000379
(1182 letters)
Database: ./nr
38,876,450 sequences; 13,856,398,315 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|EYU38281.1| hypothetical protein MIMGU_mgv1a000048mg [Mimulus... 296 1e-77
ref|XP_002303926.2| hypothetical protein POPTR_0003s19630g [Popu... 233 1e-58
emb|CBI40152.3| unnamed protein product [Vitis vinifera] 221 5e-55
ref|XP_002265533.1| PREDICTED: DNA-directed RNA polymerase E sub... 221 5e-55
gb|AAY89362.1| RNA polymerase IV largest subunit [Arabidopsis th... 219 1e-54
ref|NP_181532.2| nuclear RNA polymerase D1B [Arabidopsis thalian... 219 1e-54
gb|AAB95289.1| unknown protein [Arabidopsis thaliana] 219 1e-54
ref|XP_006420718.1| hypothetical protein CICLE_v10004129mg [Citr... 215 3e-53
ref|XP_007010999.1| DNA-directed RNA polymerase E subunit 1, put... 214 6e-53
ref|XP_006470866.1| PREDICTED: DNA-directed RNA polymerase V sub... 212 2e-52
ref|XP_006293553.1| hypothetical protein CARUB_v10022497mg [Caps... 212 2e-52
ref|XP_002879839.1| NRPD1b [Arabidopsis lyrata subsp. lyrata] gi... 210 8e-52
ref|XP_004155767.1| PREDICTED: DNA-directed RNA polymerase E sub... 209 2e-51
ref|XP_004140346.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed... 209 2e-51
ref|XP_007133762.1| hypothetical protein PHAVU_011G206900g [Phas... 207 7e-51
gb|EXB62675.1| DNA-directed RNA polymerase E subunit 1 [Morus no... 206 1e-50
ref|XP_007218881.1| hypothetical protein PRUPE_ppa000088mg [Prun... 202 2e-49
ref|XP_004308588.1| PREDICTED: DNA-directed RNA polymerase E sub... 201 7e-49
gb|AAX12374.1| DNA-directed RNA polymerase alpha subunit [Spinac... 199 3e-48
ref|XP_004511031.1| PREDICTED: DNA-directed RNA polymerase E sub... 192 2e-46
>gb|EYU38281.1| hypothetical protein MIMGU_mgv1a000048mg [Mimulus guttatus]
Length = 2113
Score = 296 bits (758), Expect = 1e-77
Identities = 180/413 (43%), Positives = 227/413 (54%), Gaps = 25/413 (6%)
Frame = +2
Query: 17 SSNKESGSNNWNSIKKNSTDTTPAQGWGSKNDTGNTKGADESTHSKAWGXXXXXXXXXXX 196
SS K W+S +K T WG + ++ + WG
Sbjct: 1708 SSPKSQEDGLWSSAQKGEQST-----WGHVKTS-------QTQNKSTWGGDTAPIENVPS 1755
Query: 197 XXIQKN----SSDSTPAQGWGSK-NDTWETKVVDE--STDLKAWGSS----KKDSEL--- 334
Q++ S+ + + GSK N+ W+TKV ++ S L WGSS K DS+
Sbjct: 1756 PKSQEDGLWSSASAAQKEQDGSKDNNPWQTKVAEQANSEPLSTWGSSSDWVKPDSQTPTG 1815
Query: 335 ------NNWSSSQKNSEDSKAAXXXXXXXXXXXXXXXXXXXXXGSPNVDTSSDNDAKPQW 496
+ WSSSQK DS + GS VDT++DND +PQW
Sbjct: 1816 DNTKNESPWSSSQKLLNDSTDSQGW------------------GSSKVDTANDNDEQPQW 1857
Query: 497 XXXXXXXXXXXXXXXXXXXXXXX----PSSDGDWRNKRPR-PVDDPNAPALFTATRQRLD 661
P++D DW+NKR PVDDPNAP +FTA+RQRLD
Sbjct: 1858 GRGRGRGRGRGWGRGVGRGREGSQGRGPTNDRDWKNKRSGGPVDDPNAPGIFTASRQRLD 1917
Query: 662 SFTAEEQDLLSEIESLMKNIRRIMHQTGYTDGDRLPADDQTYIVDNVFNYHPDKAVKAGA 841
SFTAEEQ++L E E++MKNIRR+MHQTGY DGD L ADDQ YIVDNV N+HP+K++K GA
Sbjct: 1918 SFTAEEQEVLLETETIMKNIRRVMHQTGYNDGDPLSADDQKYIVDNVLNHHPEKSLKIGA 1977
Query: 842 GLDYITVRRHSEFQDSRCFYAVSVDGVLADFSYRKCLENFLKEKYPEKAESFIPKYFKKP 1021
GLD+I V +HSEFQ SRC YAV++DG ADFSYRKCL+NF++ KYP+ AESFI KYFKKP
Sbjct: 1978 GLDHIMVNKHSEFQMSRCLYAVTIDGSKADFSYRKCLDNFIRGKYPDVAESFIAKYFKKP 2037
Query: 1022 QPRPGWNRDQQGPPPPRGEAGTPRGWNXXXXXXXXXXXXXXXXSEAGTPRGWN 1180
QPR GWN + + PPR EAGTP WN ++GTP GWN
Sbjct: 2038 QPRTGWNNNSK-DRPPRSEAGTP-NWN--------RDSTPAPPEDSGTP-GWN 2079
>ref|XP_002303926.2| hypothetical protein POPTR_0003s19630g [Populus trichocarpa]
gi|550343552|gb|EEE78905.2| hypothetical protein
POPTR_0003s19630g [Populus trichocarpa]
Length = 1920
Score = 233 bits (594), Expect = 1e-58
Identities = 146/367 (39%), Positives = 185/367 (50%), Gaps = 9/367 (2%)
Frame = +2
Query: 2 SKAWGSSNKESGSNNW-NSIKKNSTDTTPAQGWGSKNDTGNTKGADESTHS----KAWGX 166
+++ KESG W N + N DT A GWG + N++G S S WG
Sbjct: 1587 NQSLAGQGKESGG--WGNKVTSNQADT--ASGWGKPKSSENSQGWGLSKESGKEVHEWGV 1642
Query: 167 XXXXXXXXXXXXIQKNSSDSTPAQGWGSKNDTWETKVV-DESTDLKAWGSSKKDSELNNW 343
N + S QG K W+ K ++ WG K + W
Sbjct: 1643 PNSAGGNGSETN-NNNENQSLVEQG---KESGWDNKASSNQEGTASGWGKPKSPALSEGW 1698
Query: 344 SSSQKNSEDSKAAXXXXXXXXXXXXXXXXXXXXXGSPNVDTSSDNDAKPQWXXXXXXXXX 523
S + E KA G PN + + QW
Sbjct: 1699 GSPR---EPVKAVHGW------------------GVPNSGGGNGSGRDQQWGQQSREFKK 1737
Query: 524 XXXXXXXXXXXXXXPSSDGDWRNKRPRPV---DDPNAPALFTATRQRLDSFTAEEQDLLS 694
S++GDW+NKR RP +D NA +FT TRQRLD FT++EQD+LS
Sbjct: 1738 DRFEGSRGWG-----SNNGDWKNKRNRPSKPHEDLNASGIFTTTRQRLDVFTSQEQDILS 1792
Query: 695 EIESLMKNIRRIMHQTGYTDGDRLPADDQTYIVDNVFNYHPDKAVKAGAGLDYITVRRHS 874
+IE LM +IRRIMHQTGY DGD L ADDQ+Y++DNVF+YHPDKAVK GAG+D++TV RHS
Sbjct: 1793 DIEPLMLSIRRIMHQTGYNDGDPLSADDQSYVLDNVFHYHPDKAVKMGAGIDHVTVSRHS 1852
Query: 875 EFQDSRCFYAVSVDGVLADFSYRKCLENFLKEKYPEKAESFIPKYFKKPQPRPGWNRDQQ 1054
FQ+SRCFY VS DG DFSYRKCLENF+K KYP+ A+ FI KYF + ++Q
Sbjct: 1853 NFQESRCFYIVSTDGCKQDFSYRKCLENFIKGKYPDLADEFIAKYFAR-------RGNRQ 1905
Query: 1055 GPPPPRG 1075
P P G
Sbjct: 1906 RTPAPEG 1912
>emb|CBI40152.3| unnamed protein product [Vitis vinifera]
Length = 1890
Score = 221 bits (563), Expect = 5e-55
Identities = 119/281 (42%), Positives = 157/281 (55%), Gaps = 17/281 (6%)
Frame = +2
Query: 284 ESTDLKAWGSSKKDSELNNWSSSQKNSEDSKAAXXXXXXXXXXXXXXXXXXXXXGSPNVD 463
+S K W ++ S+ N S+ KN + + GSPN
Sbjct: 1616 DSPGAKGWNDVEEQSQWNQRGSAVKNDQSESS----HGWGPSNEQNQLPSSQGWGSPNAG 1671
Query: 464 TSSDNDAKPQWXXXXXXXXXXXXXXXXXXXXXXXPSSDGDWRNKRPRPV-------DDPN 622
+++ + QW S++ +W+NK+ RP DD +
Sbjct: 1672 AGHESETQSQWGQPSGKKSRPEGSRGWG-------SNNTEWKNKKNRPNKPQGPLNDDYS 1724
Query: 623 APALFTATRQRLDSFTAEEQDLLSEIESLMKNIRRIMHQTGYTDGDRLPADDQTYIVDNV 802
A +FTATRQR+D FT+EEQD+L ++E +M++IRRIMHQ GY DGD L ADDQ+YI+D V
Sbjct: 1725 AGGIFTATRQRVDIFTSEEQDILLDVEPIMQSIRRIMHQAGYNDGDPLSADDQSYILDKV 1784
Query: 803 FNYHPDKAVKAGAGLDYITVRRHSEFQDSRCFYAVSVDGVLADFSYRKCLENFLKEKYPE 982
FN HPDKAVK G G+DY+ V RHS F +SRCFY VS DG DFSYRKCLENF+KEKYP+
Sbjct: 1785 FNNHPDKAVKMGTGIDYVMVSRHSSFLESRCFYVVSTDGHKEDFSYRKCLENFIKEKYPD 1844
Query: 983 KAESFIPKYFKKPQ----------PRPGWNRDQQGPPPPRG 1075
AE+FI KYF++P+ P G NR+Q P G
Sbjct: 1845 NAETFIGKYFRRPRAGGNRERSVIPEDGGNREQSVVPEETG 1885
>ref|XP_002265533.1| PREDICTED: DNA-directed RNA polymerase E subunit 1 [Vitis vinifera]
Length = 1830
Score = 221 bits (563), Expect = 5e-55
Identities = 119/281 (42%), Positives = 157/281 (55%), Gaps = 17/281 (6%)
Frame = +2
Query: 284 ESTDLKAWGSSKKDSELNNWSSSQKNSEDSKAAXXXXXXXXXXXXXXXXXXXXXGSPNVD 463
+S K W ++ S+ N S+ KN + + GSPN
Sbjct: 1556 DSPGAKGWNDVEEQSQWNQRGSAVKNDQSESS----HGWGPSNEQNQLPSSQGWGSPNAG 1611
Query: 464 TSSDNDAKPQWXXXXXXXXXXXXXXXXXXXXXXXPSSDGDWRNKRPRPV-------DDPN 622
+++ + QW S++ +W+NK+ RP DD +
Sbjct: 1612 AGHESETQSQWGQPSGKKSRPEGSRGWG-------SNNTEWKNKKNRPNKPQGPLNDDYS 1664
Query: 623 APALFTATRQRLDSFTAEEQDLLSEIESLMKNIRRIMHQTGYTDGDRLPADDQTYIVDNV 802
A +FTATRQR+D FT+EEQD+L ++E +M++IRRIMHQ GY DGD L ADDQ+YI+D V
Sbjct: 1665 AGGIFTATRQRVDIFTSEEQDILLDVEPIMQSIRRIMHQAGYNDGDPLSADDQSYILDKV 1724
Query: 803 FNYHPDKAVKAGAGLDYITVRRHSEFQDSRCFYAVSVDGVLADFSYRKCLENFLKEKYPE 982
FN HPDKAVK G G+DY+ V RHS F +SRCFY VS DG DFSYRKCLENF+KEKYP+
Sbjct: 1725 FNNHPDKAVKMGTGIDYVMVSRHSSFLESRCFYVVSTDGHKEDFSYRKCLENFIKEKYPD 1784
Query: 983 KAESFIPKYFKKPQ----------PRPGWNRDQQGPPPPRG 1075
AE+FI KYF++P+ P G NR+Q P G
Sbjct: 1785 NAETFIGKYFRRPRAGGNRERSVIPEDGGNREQSVVPEETG 1825
>gb|AAY89362.1| RNA polymerase IV largest subunit [Arabidopsis thaliana]
Length = 1976
Score = 219 bits (559), Expect = 1e-54
Identities = 142/396 (35%), Positives = 199/396 (50%), Gaps = 36/396 (9%)
Frame = +2
Query: 11 WGSSNK-ESGSNNWNSIKKNS--TDTTPAQGWGSKNDTGNTKGADESTHSKAWGXXXXXX 181
WGSS+K +SG+ WNS K + TD+ PA WGS+ K ++ + AWG
Sbjct: 1498 WGSSDKTKSGAAAWNSWDKKNIETDSEPA-AWGSQGK----KNSETESGPAAWGAWDK-- 1550
Query: 182 XXXXXXXIQKNSSDSTPAQGWG---SKND----------TWETKVVDESTDLKAWGSSKK 322
+K+ ++ PA GWG KN W+ K D + AWGS+
Sbjct: 1551 --------KKSETEPGPA-GWGMGDKKNSETELGPAAMGNWDKKKSDTKSGPAAWGSTDA 1601
Query: 323 DSELNNWSSSQKNSEDSK---AAXXXXXXXXXXXXXXXXXXXXXGSPNV---DTSSDNDA 484
+ W SS KN+ +++ AA G P+ D ++ D
Sbjct: 1602 AA----WGSSDKNNSETESDAAAWGSRNKKTSEIESGAGAWGSWGQPSPTAEDKDTNEDD 1657
Query: 485 KPQWXXXXXXXXXXXXXXXXXXXXXXX---PSSDG-------DW---RNKRPRPV-DDPN 622
+ W PSS G DW RN PRP + N
Sbjct: 1658 RNPWVSLKETKSREKDDKERSQWGNPAKKFPSSGGWSNGGGADWKGNRNHTPRPPRSEDN 1717
Query: 623 APALFTATRQRLDSFTAEEQDLLSEIESLMKNIRRIMHQTGYTDGDRLPADDQTYIVDNV 802
+FTATRQRLDSFT+EEQ+LLS++E +M+ +R+IMH + Y DGD + DD+T++++ +
Sbjct: 1718 LAPMFTATRQRLDSFTSEEQELLSDVEPVMRTLRKIMHPSAYPDGDPISDDDKTFVLEKI 1777
Query: 803 FNYHPDKAVKAGAGLDYITVRRHSEFQDSRCFYAVSVDGVLADFSYRKCLENFLKEKYPE 982
N+HP K K G+G+D+ITV +H+ F DSRCF+ VS DG DFSYRK L N+L +KYP+
Sbjct: 1778 LNFHPQKETKLGSGVDFITVDKHTIFSDSRCFFVVSTDGAKQDFSYRKSLNNYLMKKYPD 1837
Query: 983 KAESFIPKYFKKPQPRPGWNRDQQGPPPPRGEAGTP 1090
+AE FI KYF KP+P +R+ Q PP E P
Sbjct: 1838 RAEEFIDKYFTKPRPSGNRDRNNQDATPPGEEQSQP 1873
>ref|NP_181532.2| nuclear RNA polymerase D1B [Arabidopsis thaliana]
gi|75320513|sp|Q5D869.1|NRPE1_ARATH RecName:
Full=DNA-directed RNA polymerase V subunit 1; AltName:
Full=DNA-directed RNA polymerase D subunit 1b;
Short=AtNRPD1b; Short=Nuclear RNA polymerase D 1b;
AltName: Full=DNA-directed RNA polymerase E subunit 1;
Short=Nuclear RNA polymerase E 1; AltName: Full=Protein
DEFECTIVE IN MERISTEM SILENCING 5; AltName: Full=Protein
DEFECTIVE IN RNA-DIRECTED DNA METHYLATION 3; AltName:
Full=Protein RNA-DIRECTED DNA METHYLATION DEFECTIVE 1;
AltName: Full=RNA polymerase IV subunit 1; Short=POL IV 1
gi|59939210|gb|AAX12373.1| DNA-directed RNA polymerase
alpha subunit [Arabidopsis thaliana]
gi|62822917|gb|AAY15198.1| DNA-dependent RNA polymerase
large subunit [Arabidopsis thaliana]
gi|330254673|gb|AEC09767.1| nuclear RNA polymerase D1B
[Arabidopsis thaliana]
Length = 1976
Score = 219 bits (559), Expect = 1e-54
Identities = 142/396 (35%), Positives = 199/396 (50%), Gaps = 36/396 (9%)
Frame = +2
Query: 11 WGSSNK-ESGSNNWNSIKKNS--TDTTPAQGWGSKNDTGNTKGADESTHSKAWGXXXXXX 181
WGSS+K +SG+ WNS K + TD+ PA WGS+ K ++ + AWG
Sbjct: 1498 WGSSDKTKSGAAAWNSWDKKNIETDSEPA-AWGSQGK----KNSETESGPAAWGAWDK-- 1550
Query: 182 XXXXXXXIQKNSSDSTPAQGWG---SKND----------TWETKVVDESTDLKAWGSSKK 322
+K+ ++ PA GWG KN W+ K D + AWGS+
Sbjct: 1551 --------KKSETEPGPA-GWGMGDKKNSETELGPAAMGNWDKKKSDTKSGPAAWGSTDA 1601
Query: 323 DSELNNWSSSQKNSEDSK---AAXXXXXXXXXXXXXXXXXXXXXGSPNV---DTSSDNDA 484
+ W SS KN+ +++ AA G P+ D ++ D
Sbjct: 1602 AA----WGSSDKNNSETESDAAAWGSRNKKTSEIESGAGAWGSWGQPSPTAEDKDTNEDD 1657
Query: 485 KPQWXXXXXXXXXXXXXXXXXXXXXXX---PSSDG-------DW---RNKRPRPV-DDPN 622
+ W PSS G DW RN PRP + N
Sbjct: 1658 RNPWVSLKETKSREKDDKERSQWGNPAKKFPSSGGWSNGGGADWKGNRNHTPRPPRSEDN 1717
Query: 623 APALFTATRQRLDSFTAEEQDLLSEIESLMKNIRRIMHQTGYTDGDRLPADDQTYIVDNV 802
+FTATRQRLDSFT+EEQ+LLS++E +M+ +R+IMH + Y DGD + DD+T++++ +
Sbjct: 1718 LAPMFTATRQRLDSFTSEEQELLSDVEPVMRTLRKIMHPSAYPDGDPISDDDKTFVLEKI 1777
Query: 803 FNYHPDKAVKAGAGLDYITVRRHSEFQDSRCFYAVSVDGVLADFSYRKCLENFLKEKYPE 982
N+HP K K G+G+D+ITV +H+ F DSRCF+ VS DG DFSYRK L N+L +KYP+
Sbjct: 1778 LNFHPQKETKLGSGVDFITVDKHTIFSDSRCFFVVSTDGAKQDFSYRKSLNNYLMKKYPD 1837
Query: 983 KAESFIPKYFKKPQPRPGWNRDQQGPPPPRGEAGTP 1090
+AE FI KYF KP+P +R+ Q PP E P
Sbjct: 1838 RAEEFIDKYFTKPRPSGNRDRNNQDATPPGEEQSQP 1873
>gb|AAB95289.1| unknown protein [Arabidopsis thaliana]
Length = 839
Score = 219 bits (559), Expect = 1e-54
Identities = 142/396 (35%), Positives = 199/396 (50%), Gaps = 36/396 (9%)
Frame = +2
Query: 11 WGSSNK-ESGSNNWNSIKKNS--TDTTPAQGWGSKNDTGNTKGADESTHSKAWGXXXXXX 181
WGSS+K +SG+ WNS K + TD+ PA WGS+ K ++ + AWG
Sbjct: 361 WGSSDKTKSGAAAWNSWDKKNIETDSEPA-AWGSQGK----KNSETESGPAAWGAWDK-- 413
Query: 182 XXXXXXXIQKNSSDSTPAQGWG---SKND----------TWETKVVDESTDLKAWGSSKK 322
+K+ ++ PA GWG KN W+ K D + AWGS+
Sbjct: 414 --------KKSETEPGPA-GWGMGDKKNSETELGPAAMGNWDKKKSDTKSGPAAWGSTDA 464
Query: 323 DSELNNWSSSQKNSEDSK---AAXXXXXXXXXXXXXXXXXXXXXGSPNV---DTSSDNDA 484
+ W SS KN+ +++ AA G P+ D ++ D
Sbjct: 465 AA----WGSSDKNNSETESDAAAWGSRNKKTSEIESGAGAWGSWGQPSPTAEDKDTNEDD 520
Query: 485 KPQWXXXXXXXXXXXXXXXXXXXXXXX---PSSDG-------DW---RNKRPRPV-DDPN 622
+ W PSS G DW RN PRP + N
Sbjct: 521 RNPWVSLKETKSREKDDKERSQWGNPAKKFPSSGGWSNGGGADWKGNRNHTPRPPRSEDN 580
Query: 623 APALFTATRQRLDSFTAEEQDLLSEIESLMKNIRRIMHQTGYTDGDRLPADDQTYIVDNV 802
+FTATRQRLDSFT+EEQ+LLS++E +M+ +R+IMH + Y DGD + DD+T++++ +
Sbjct: 581 LAPMFTATRQRLDSFTSEEQELLSDVEPVMRTLRKIMHPSAYPDGDPISDDDKTFVLEKI 640
Query: 803 FNYHPDKAVKAGAGLDYITVRRHSEFQDSRCFYAVSVDGVLADFSYRKCLENFLKEKYPE 982
N+HP K K G+G+D+ITV +H+ F DSRCF+ VS DG DFSYRK L N+L +KYP+
Sbjct: 641 LNFHPQKETKLGSGVDFITVDKHTIFSDSRCFFVVSTDGAKQDFSYRKSLNNYLMKKYPD 700
Query: 983 KAESFIPKYFKKPQPRPGWNRDQQGPPPPRGEAGTP 1090
+AE FI KYF KP+P +R+ Q PP E P
Sbjct: 701 RAEEFIDKYFTKPRPSGNRDRNNQDATPPGEEQSQP 736
>ref|XP_006420718.1| hypothetical protein CICLE_v10004129mg [Citrus clementina]
gi|557522591|gb|ESR33958.1| hypothetical protein
CICLE_v10004129mg [Citrus clementina]
Length = 1867
Score = 215 bits (547), Expect = 3e-53
Identities = 135/384 (35%), Positives = 190/384 (49%), Gaps = 31/384 (8%)
Frame = +2
Query: 11 WGSSNKESG-SNNWNSIKKNSTDTTPAQGWGSKNDTGNTKGADESTHSKAWGXXXXXXXX 187
WG+ ++SG S++W+ K ++ T WG +N + G D +W
Sbjct: 1511 WGTEAQDSGKSSDWSEWKDHANATA---SWG-RNGSEENSGWDTKA---SWNTKALDKLD 1563
Query: 188 XXXXXIQKNSS-----DSTPAQGW--GSKNDTWETKVVDE----------STDLKAWGSS 316
++ +SS + +GW SK E +V + TD +WG
Sbjct: 1564 DVGSAVENSSSVWGAREDFSTKGWEDSSKPSANEKSIVHQIGGWNVPDAKGTDDSSWGKQ 1623
Query: 317 K-----KDSELNNWSSSQKN-SEDSKAAXXXXXXXXXXXXXXXXXXXXXGSPNVDTSSDN 478
K K ++ ++W + +E S+ A G + N
Sbjct: 1624 KLTENAKGTDDSSWGKQKHTENESSQPASSNAWDLPDATGGSETEMQVWGQSRKEPFKKN 1683
Query: 479 DAKPQWXXXXXXXXXXXXXXXXXXXXXXXPSSDGDWRNKRPRPV-------DDPNAPALF 637
W SS G+W+ K+ RP DD A++
Sbjct: 1684 RG---WA-----------------------SSSGEWKGKKNRPPRSPGVVNDDSTVNAMY 1717
Query: 638 TATRQRLDSFTAEEQDLLSEIESLMKNIRRIMHQTGYTDGDRLPADDQTYIVDNVFNYHP 817
T TRQRLD FT+EEQD+LS++E +M++IRRIMHQ+GY DGDRL ADD+++I DNVFNYHP
Sbjct: 1718 TVTRQRLDMFTSEEQDILSDVEPIMRSIRRIMHQSGYNDGDRLSADDKSFIFDNVFNYHP 1777
Query: 818 DKAVKAGAGLDYITVRRHSEFQDSRCFYAVSVDGVLADFSYRKCLENFLKEKYPEKAESF 997
DKA+K GAG+D+ V +H FQDSRC + VS DG DFSYRKCLE+F++ KYPE + F
Sbjct: 1778 DKAMKMGAGIDHFKVDKHGSFQDSRCLFVVSTDGSQQDFSYRKCLESFIRGKYPEFVDEF 1837
Query: 998 IPKYFKKPQPRPGWNRDQQGPPPP 1069
I KYF++ PR G NR+ PP P
Sbjct: 1838 IGKYFRR--PRSGGNREPSLPPVP 1859
>ref|XP_007010999.1| DNA-directed RNA polymerase E subunit 1, putative isoform 1
[Theobroma cacao] gi|590569189|ref|XP_007011000.1|
DNA-directed RNA polymerase E subunit 1, putative isoform
1 [Theobroma cacao] gi|508727912|gb|EOY19809.1|
DNA-directed RNA polymerase E subunit 1, putative isoform
1 [Theobroma cacao] gi|508727913|gb|EOY19810.1|
DNA-directed RNA polymerase E subunit 1, putative isoform
1 [Theobroma cacao]
Length = 1788
Score = 214 bits (545), Expect = 6e-53
Identities = 124/338 (36%), Positives = 183/338 (54%), Gaps = 4/338 (1%)
Frame = +2
Query: 23 NKESGSNNWNSIKKNSTDTTPAQGWGSKNDTGNTKGADESTHSKAWGXXXXXXXXXXXXX 202
N+++ ++W +KKN T Q + T + GAD T +WG
Sbjct: 1482 NEQTKLSDWG-LKKNDT-----QDVSMEEKTFKSNGADTGT---SWGTMGKESE------ 1526
Query: 203 IQKNSSDSTPAQGWGSKNDTWETKVVDESTDLKAWGSSKKDSELNNWSSSQKNSEDSKAA 382
+ +++D+ P GWG++ D TK +D+S+ W K W S ++++ + +
Sbjct: 1527 -KPDANDALPWSGWGTQ-DVIPTKTLDDSSKSSGWEQQKSPECSQGWGSLDESNQPASS- 1583
Query: 383 XXXXXXXXXXXXXXXXXXXXXGSPNVDTSSDNDAKPQWXXXXXXXXXXXXXXXXXXXXXX 562
+PN S+ ++ + QW
Sbjct: 1584 ------------------NGWDTPNGLGSTQSEKQHQWGQSRGSRRW------------- 1612
Query: 563 XPSSDGDWRNKRPRPV----DDPNAPALFTATRQRLDSFTAEEQDLLSEIESLMKNIRRI 730
+SD +N + DD + A++TATRQRLD FT+EEQD+LS++E LM++IR+I
Sbjct: 1613 --ASDASKKNHPVKSARVMNDDSSMAAMYTATRQRLDMFTSEEQDILSDVEPLMQSIRKI 1670
Query: 731 MHQTGYTDGDRLPADDQTYIVDNVFNYHPDKAVKAGAGLDYITVRRHSEFQDSRCFYAVS 910
MHQ+GY DGD L A DQ++I++NVF +HPDKA+K GAG+DY+ V +HS F DSRCFY VS
Sbjct: 1671 MHQSGYNDGDPLSALDQSFILENVFTHHPDKAIKMGAGVDYVMVSKHSNFPDSRCFYVVS 1730
Query: 911 VDGVLADFSYRKCLENFLKEKYPEKAESFIPKYFKKPQ 1024
DG DFSYRKCL+NF+K KYP+ A+ FI KYF+KP+
Sbjct: 1731 TDGRKQDFSYRKCLDNFIKGKYPDMADVFIAKYFRKPR 1768
>ref|XP_006470866.1| PREDICTED: DNA-directed RNA polymerase V subunit 1-like [Citrus
sinensis]
Length = 1865
Score = 212 bits (540), Expect = 2e-52
Identities = 138/400 (34%), Positives = 189/400 (47%), Gaps = 44/400 (11%)
Frame = +2
Query: 2 SKAWGSSNKESGSNNWNSIKKNSTDTTPAQGWGSK-NDTGNTKG----ADESTHSKAWGX 166
S AWG+ S+ K + P GWG++ D+G + D + + +WG
Sbjct: 1478 SSAWGTEASWDKSSEVTLEKVAAPAENPLSGWGTEAQDSGKSSDWSEWKDHANATASWG- 1536
Query: 167 XXXXXXXXXXXXIQKNSSDSTPAQGWGSKNDTWETKVVD-------------------ES 289
+N S+ GW +K +W+TK +D E
Sbjct: 1537 --------------RNGSEEN--SGWDTKA-SWKTKALDKLDDVGSAVENSSSVWGARED 1579
Query: 290 TDLKAWGSSKKDS--------ELNNWS-SSQKNSEDS---KAAXXXXXXXXXXXXXXXXX 433
K W S K S ++ W+ K ++DS K
Sbjct: 1580 FSTKGWEDSSKPSANEKSIVHQIGGWNVPDAKGTDDSCWGKQKLTENAKGTDDSSWGKQK 1639
Query: 434 XXXXGSPNVDTSSDNDAKPQWXXXXXXXXXXXXXXXXXXXXXXX-PSSDGDWRNKRPRPV 610
SP +S+ D SS G+W+ K+ RP
Sbjct: 1640 HTENESPQPASSNAWDLPDATGGSETEMQVWGQSRKEPFKKNRGWASSSGEWKGKKNRPP 1699
Query: 611 -------DDPNAPALFTATRQRLDSFTAEEQDLLSEIESLMKNIRRIMHQTGYTDGDRLP 769
DD A++T TRQRLD FT+EEQD+LS +E +M++IRRIMHQ+GY DGDRL
Sbjct: 1700 RSPGVVNDDSTVNAMYTVTRQRLDMFTSEEQDILSHVEPIMRSIRRIMHQSGYNDGDRLS 1759
Query: 770 ADDQTYIVDNVFNYHPDKAVKAGAGLDYITVRRHSEFQDSRCFYAVSVDGVLADFSYRKC 949
ADD+++I DNVFNYHPDKA+K GAG+D+ V +H FQDSRC + VS DG DFSYRKC
Sbjct: 1760 ADDKSFIFDNVFNYHPDKAMKMGAGIDHFKVDKHGSFQDSRCLFVVSTDGSQQDFSYRKC 1819
Query: 950 LENFLKEKYPEKAESFIPKYFKKPQPRPGWNRDQQGPPPP 1069
LE+F++ KYP+ + FI KYF++ PR G NR+ PP P
Sbjct: 1820 LESFIRGKYPDLVDEFIGKYFRR--PRSGGNREPSLPPVP 1857
>ref|XP_006293553.1| hypothetical protein CARUB_v10022497mg [Capsella rubella]
gi|482562261|gb|EOA26451.1| hypothetical protein
CARUB_v10022497mg [Capsella rubella]
Length = 1959
Score = 212 bits (540), Expect = 2e-52
Identities = 137/384 (35%), Positives = 197/384 (51%), Gaps = 23/384 (5%)
Frame = +2
Query: 8 AWGSSNK-ESGSNNWNSIKKNST--DTTPAQGWGSKNDTGNTKGADES-THSKAWGXXXX 175
AWGSS K +S + W+ KN+ D+ PA GWGS+ GN K E+ ++ +WG
Sbjct: 1497 AWGSSGKTKSDAATWSPWDKNNMEPDSEPA-GWGSQ---GNMKSETETESNGASWGSSGK 1552
Query: 176 XXXXXXXXXI--QKNSSDSTPAQGWGSKNDTWETKVVDESTDLKAWGS-----SKKDSEL 334
+ N ++ WGS+ K + + +WG+ S+ +S L
Sbjct: 1553 TKSGAAAWGSCDKNNMETNSEPSAWGSQGK----KKAETESGPASWGAWDKKISETESGL 1608
Query: 335 NNWSSSQK-NSE-DSKAAXXXXXXXXXXXXXXXXXXXXXGSPNV---DTSS---DNDAKP 490
W + K NSE +S AA G+P V +T S D K
Sbjct: 1609 AGWGNGDKINSETESGAAAWGSWGQPSPTAADKDTNEDDGNPWVSLKETKSGEKDEKEKS 1668
Query: 491 QWXXXXXXXXXXXXXXXXXXXXXXXPSSDGDWRNKR---PRPV-DDPNAPALFTATRQRL 658
QW +WR KR PRP + N +FTAT+QRL
Sbjct: 1669 QWGNPAKKFPSDGSYGGWSN------GGGAEWRGKRNHTPRPPRSEDNLAPMFTATKQRL 1722
Query: 659 DSFTAEEQDLLSEIESLMKNIRRIMHQTGYTDGDRLPADDQTYIVDNVFNYHPDKAVKAG 838
DSFT+EEQ+LLS++E +M+ +R+IMH +GY DG+ + DD+T++++ + N+HP+K K G
Sbjct: 1723 DSFTSEEQELLSDVEPVMRTLRKIMHMSGYPDGEPISDDDKTFVLEKILNFHPEKERKLG 1782
Query: 839 AGLDYITVRRHSEFQDSRCFYAVSVDGVLADFSYRKCLENFLKEKYPEKAESFIPKYFKK 1018
+ +D+ITV +H+ F D+RCF+ VS DG DFSYRK L N+L KYP++AE FI KYFKK
Sbjct: 1783 SAVDFITVDKHTTFTDTRCFFVVSTDGAKQDFSYRKSLNNYLMTKYPDRAEEFIDKYFKK 1842
Query: 1019 PQPRPGWNRDQQGPPPPRGEAGTP 1090
P+P +R+ Q PP E P
Sbjct: 1843 PRPSGNRDRNNQDATPPGEEQSQP 1866
>ref|XP_002879839.1| NRPD1b [Arabidopsis lyrata subsp. lyrata] gi|297325678|gb|EFH56098.1|
NRPD1b [Arabidopsis lyrata subsp. lyrata]
Length = 1947
Score = 210 bits (535), Expect = 8e-52
Identities = 139/396 (35%), Positives = 198/396 (50%), Gaps = 36/396 (9%)
Frame = +2
Query: 11 WGSSNK-ESGSNNWNSIKKNS--TDTTPAQGWGSKNDTGNTKGADESTHSKAWGXXXXXX 181
WGSS+K +SG+ W+S K + TD+ PA WGS++ + ST WG
Sbjct: 1498 WGSSDKTKSGAAAWSSWDKKNMETDSEPA-AWGSQSKNKPETESGPST----WGAWDT-- 1550
Query: 182 XXXXXXXIQKNSSDSTPAQGWG---SKND----------TWETKVVDESTDLKAWGSSKK 322
+K+ ++S PA GWG KN W+ K + + AWGS+
Sbjct: 1551 --------KKSETESGPA-GWGIVDKKNSETESGPAAMGNWDKKKSNTESGPAAWGST-- 1599
Query: 323 DSELNNWSSSQKNSEDSK---AAXXXXXXXXXXXXXXXXXXXXXGSPNVDTSSDN---DA 484
+ W S KN+ +++ AA G P ++++ D
Sbjct: 1600 --DAAVWGFSDKNNSETESDAAAWGSRDKKTSETESGAAAWGSWGQPTPTAANEDANEDD 1657
Query: 485 KPQWXXXXXXXXXXXXXXXXXXXXXXX---PSSDG-------DWRNKR---PRPV-DDPN 622
+ W PSS G DW+ KR PRP + N
Sbjct: 1658 ENPWVSLKETKSRDKDDKERIQWGNPAKKFPSSGGWSNGGGADWKGKRNHTPRPPRSEDN 1717
Query: 623 APALFTATRQRLDSFTAEEQDLLSEIESLMKNIRRIMHQTGYTDGDRLPADDQTYIVDNV 802
+FTATRQRLDSFT+EEQ+LLS++E +M+ +R+IMH + Y DGD + DD+T++++ +
Sbjct: 1718 LAPMFTATRQRLDSFTSEEQELLSDVEPVMRTLRKIMHPSAYPDGDPISDDDKTFVLEKI 1777
Query: 803 FNYHPDKAVKAGAGLDYITVRRHSEFQDSRCFYAVSVDGVLADFSYRKCLENFLKEKYPE 982
N+HP K K G+G+D+ITV +H+ F DSRCF+ VS DG DFSYRK L N+L KYP+
Sbjct: 1778 LNFHPQKETKLGSGVDFITVDKHTIFSDSRCFFVVSTDGAKQDFSYRKSLNNYLMMKYPD 1837
Query: 983 KAESFIPKYFKKPQPRPGWNRDQQGPPPPRGEAGTP 1090
+AE FI KYF KP+P +R+ Q PP E P
Sbjct: 1838 RAEEFIDKYFTKPRPSGNRDRNNQDATPPGEEQSQP 1873
>ref|XP_004155767.1| PREDICTED: DNA-directed RNA polymerase E subunit 1-like [Cucumis
sativus]
Length = 1959
Score = 209 bits (532), Expect = 2e-51
Identities = 127/362 (35%), Positives = 182/362 (50%), Gaps = 14/362 (3%)
Frame = +2
Query: 8 AWGSSN-----KESGSNNWNSIKKNSTDTTPAQGWGSK--NDTGNTKGADESTHSKAWGX 166
AWG K S +NN +++ GWGS+ ++ G+ G D+ T+ +
Sbjct: 1607 AWGQQKSRDVIKPSLANNESNLS----------GWGSQIESNEGSDHGFDQVTNEQKSSD 1656
Query: 167 XXXXXXXXXXXXIQKNSSDSTPAQGWGSKNDTWETKVVDESTDLKAWGSSKKDSELNNWS 346
+Q WGS+ND+ L +WG ++ SE +
Sbjct: 1657 TRGWDSQEKTDKPWDKQKSLEASQSWGSQNDS-----------LGSWGQPQRASEECSRE 1705
Query: 347 SSQKNSEDSKAAXXXXXXXXXXXXXXXXXXXXXGSPNVDTSSDNDAKPQWXXXXXXXXXX 526
S +S GS SS+ + W
Sbjct: 1706 SQDDSSTQFSQLKPPETSLGWEQQKSPEVSHGWGSHK--ESSEQTSSHGWDKKNQGSKGW 1763
Query: 527 XXXXXXXXXXXXXPSSDGDWRNKRPRPV-------DDPNAPALFTATRQRLDSFTAEEQD 685
+ G+W+N++ RP DD N AL+TA+ QRLD FT+EEQD
Sbjct: 1764 G-------------GNAGEWKNRKNRPPKSPGMSNDDANLRALYTASGQRLDMFTSEEQD 1810
Query: 686 LLSEIESLMKNIRRIMHQTGYTDGDRLPADDQTYIVDNVFNYHPDKAVKAGAGLDYITVR 865
+L++IE +M++IR++MHQ+GY DGD L A+DQ++++ +VFN+HPDKA K GAG+D+ V
Sbjct: 1811 ILADIEPIMQSIRKVMHQSGYNDGDPLSAEDQSFVLQSVFNFHPDKAAKMGAGIDHFMVS 1870
Query: 866 RHSEFQDSRCFYAVSVDGVLADFSYRKCLENFLKEKYPEKAESFIPKYFKKPQPRPGWNR 1045
RHS FQ+SRCFY V+ DG DFSYRKCL+NF+K KYP+ AE F+ KYF+K PRP NR
Sbjct: 1871 RHSSFQESRCFYVVTTDGHKEDFSYRKCLDNFIKGKYPDLAEMFVAKYFRK--PRPNRNR 1928
Query: 1046 DQ 1051
D+
Sbjct: 1929 DR 1930
>ref|XP_004140346.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase E subunit
1-like [Cucumis sativus]
Length = 2019
Score = 209 bits (532), Expect = 2e-51
Identities = 127/362 (35%), Positives = 182/362 (50%), Gaps = 14/362 (3%)
Frame = +2
Query: 8 AWGSSN-----KESGSNNWNSIKKNSTDTTPAQGWGSK--NDTGNTKGADESTHSKAWGX 166
AWG K S +NN +++ GWGS+ ++ G+ G D+ T+ +
Sbjct: 1667 AWGQQKSRDVIKPSLANNESNLS----------GWGSQIESNEGSDHGFDQVTNEQKSSD 1716
Query: 167 XXXXXXXXXXXXIQKNSSDSTPAQGWGSKNDTWETKVVDESTDLKAWGSSKKDSELNNWS 346
+Q WGS+ND+ L +WG ++ SE +
Sbjct: 1717 TRGWDSQEKTDKPWDKQKSLEASQSWGSQNDS-----------LGSWGQPQRASEECSRE 1765
Query: 347 SSQKNSEDSKAAXXXXXXXXXXXXXXXXXXXXXGSPNVDTSSDNDAKPQWXXXXXXXXXX 526
S +S GS SS+ + W
Sbjct: 1766 SQDDSSTQFSQLKPPETSLGWEQQKSPEVSHGWGSNK--ESSEQTSSHGWDKKNQGSKGW 1823
Query: 527 XXXXXXXXXXXXXPSSDGDWRNKRPRPV-------DDPNAPALFTATRQRLDSFTAEEQD 685
+ G+W+N++ RP DD N AL+TA+ QRLD FT+EEQD
Sbjct: 1824 G-------------GNAGEWKNRKNRPPKSPGMSNDDANLRALYTASGQRLDMFTSEEQD 1870
Query: 686 LLSEIESLMKNIRRIMHQTGYTDGDRLPADDQTYIVDNVFNYHPDKAVKAGAGLDYITVR 865
+L++IE +M++IR++MHQ+GY DGD L A+DQ++++ +VFN+HPDKA K GAG+D+ V
Sbjct: 1871 ILADIEPIMQSIRKVMHQSGYNDGDPLSAEDQSFVLQSVFNFHPDKAAKMGAGIDHFMVS 1930
Query: 866 RHSEFQDSRCFYAVSVDGVLADFSYRKCLENFLKEKYPEKAESFIPKYFKKPQPRPGWNR 1045
RHS FQ+SRCFY V+ DG DFSYRKCL+NF+K KYP+ AE F+ KYF+K PRP NR
Sbjct: 1931 RHSSFQESRCFYVVTTDGHKEDFSYRKCLDNFIKGKYPDLAEMFVAKYFRK--PRPNRNR 1988
Query: 1046 DQ 1051
D+
Sbjct: 1989 DR 1990
>ref|XP_007133762.1| hypothetical protein PHAVU_011G206900g [Phaseolus vulgaris]
gi|561006762|gb|ESW05756.1| hypothetical protein
PHAVU_011G206900g [Phaseolus vulgaris]
Length = 2052
Score = 207 bits (527), Expect = 7e-51
Identities = 140/389 (35%), Positives = 191/389 (49%), Gaps = 28/389 (7%)
Frame = +2
Query: 8 AWGSSNKE-------SGSNNWNSIKKNSTDTTPAQ--GWGSKNDTGNTKGADESTHSKAW 160
+WGS ++ S S +W +K+ T+TT + GWG +N + G E+ +W
Sbjct: 1679 SWGSGTRKDVTQVDTSVSGSWGGSRKDQTNTTSNEWAGWG-RNKSEIPAGGCETVQEDSW 1737
Query: 161 GXXXXXXXXXXXXXIQKNSSDSTPAQGWGSKN--------DTWETKVVD------ESTDL 298
G QK++S S WG+ D W V+ E
Sbjct: 1738 GSGKLKDDVT-----QKDNSGSG---AWGANKTGLTKTEVDEWARNKVETADGGSEKLQE 1789
Query: 299 KAW--GSSKKDSELNNWSSSQKNSEDSKAAXXXXXXXXXXXXXXXXXXXXXGSPNVDTSS 472
+W G+ K +S++ N S + NS S++ S +S
Sbjct: 1790 DSWNSGNLKSESKVGNASWGKPNSSGSQS------WDSHNQSNQNSSSRGWESHIASANS 1843
Query: 473 DNDAKPQWXXXXXXXXXXXXXXXXXXXXXXXPSSDGDWRNKRPRPVDDPNAPALFTATRQ 652
D++ QW S+ GDW+N R RP P P Q
Sbjct: 1844 DSEKGFQWGKQGRESFKKNRFEGSQGRG----SNSGDWKN-RNRP---PRTPG------Q 1889
Query: 653 RLDSFTAEEQDLLSEIESLMKNIRRIMHQTGYTDGDRLPADDQTYIVDNVFNYHPDKAVK 832
RLD +++EEQD+L EIE +M++IRRIM Q GY DGD L ADDQ ++++NVF +HPDK K
Sbjct: 1890 RLDLYSSEEQDVLKEIEPIMQSIRRIMQQQGYNDGDPLAADDQLFVLENVFEHHPDKDTK 1949
Query: 833 AGAGLDYITVRRHSEFQDSRCFYAVSVDGVLADFSYRKCLENFLKEKYPEKAESFIPKYF 1012
GAG+DY+ V +HS FQDSRCFY V DG DFSYRKCL+N++++KYPE AESF KYF
Sbjct: 1950 MGAGIDYVMVNKHSSFQDSRCFYVVLKDGRREDFSYRKCLDNWIRKKYPELAESFFGKYF 2009
Query: 1013 KKPQPR---PGWNRDQQGPPPPRGEAGTP 1090
+KP+ R R Q PPR EA TP
Sbjct: 2010 RKPRNRAEQTATPRGDQTAMPPRDEAATP 2038
>gb|EXB62675.1| DNA-directed RNA polymerase E subunit 1 [Morus notabilis]
Length = 2054
Score = 206 bits (525), Expect = 1e-50
Identities = 138/428 (32%), Positives = 188/428 (43%), Gaps = 65/428 (15%)
Frame = +2
Query: 2 SKAWGSSNKESGSNNWNSIKKNSTDTTPAQGWGSKN----------DTGNT--KGADEST 145
+K W S N SG+ W+ K +D + A+GW S+N D+ NT K D +T
Sbjct: 1627 AKGWNSENISSGAG-WS---KAGSDNSHAKGWNSENISSGARWSKADSDNTHAKSTDWNT 1682
Query: 146 HS--------KAWGXXXXXXXXXXXXXIQKNSSDSTPAQGWGSKNDT------------- 262
S W K+ D WG+ ++
Sbjct: 1683 TSDRTKTMTKNTWSGWHGEKSEKEDILSTKSQQDLPRNSDWGAVSNRENNAERAYEFVSK 1742
Query: 263 -------------WETKVVDESTDLKAWGSSKKDSELNNWSSSQ-KNSEDSKAAXXXXXX 400
W+ K+ + + W SS + + +SS+ K DS
Sbjct: 1743 DQPLPDQVSEPCDWDNKLTPQKA-VSGWLSSNDEGWTKDANSSERKEPTDSPVVYNSWEK 1801
Query: 401 XXXXXXXXXXXXXXXGS--PNVDTSSDNDAKPQWXXXXXXXXXXXXXXXXXXXXXXXPSS 574
S P + + +W S
Sbjct: 1802 RTSSEISQNVESASFNSWLPRAGDGGEVEKPNEWVKKSGSFKKNHGETSGGWG-----SD 1856
Query: 575 DGDWRNKR------PRPVDDPNAPALFTATRQRLDSFTAEEQDLLSEIESLMKNIRRIMH 736
GDW+ K+ PR +D + LFT TRQRLD FT+EEQD LS IE MK+IRRIMH
Sbjct: 1857 SGDWKIKKNHPGKFPRMNNDNTSVRLFTETRQRLDLFTSEEQDALSLIEPTMKSIRRIMH 1916
Query: 737 QTGYTDGDRLPADDQTYIVDNVFNYHPDKAVKAGAGLDYITVRRHSEFQDSRCFYAVSVD 916
++GY DGD + +DQ++I+DNVFNYHPDKA K G+G+D++ + RHS FQDSRC Y VS D
Sbjct: 1917 KSGYNDGDPIRPEDQSFIIDNVFNYHPDKAAKMGSGIDHLMISRHSSFQDSRCLYVVSTD 1976
Query: 917 GVLADFSYRKCLENFLKEKYPEKAESFIPKYFKKPQ----------PRPGWNRDQQGPPP 1066
G DFSYRKCL N +K ++P+ A+ F+ KYF+KP+ P P WN Q P
Sbjct: 1977 GRKEDFSYRKCLGNLIKSRFPDVADEFLDKYFRKPKPGGNQDRISTPEPAWNNTQAPTPE 2036
Query: 1067 PRGEAGTP 1090
P G P
Sbjct: 2037 PSGNTMAP 2044
>ref|XP_007218881.1| hypothetical protein PRUPE_ppa000088mg [Prunus persica]
gi|462415343|gb|EMJ20080.1| hypothetical protein
PRUPE_ppa000088mg [Prunus persica]
Length = 1855
Score = 202 bits (515), Expect = 2e-49
Identities = 92/156 (58%), Positives = 119/156 (76%), Gaps = 6/156 (3%)
Frame = +2
Query: 569 SSDGDWRNKRPRPV------DDPNAPALFTATRQRLDSFTAEEQDLLSEIESLMKNIRRI 730
SS G+W+NK P D+ AL+T TRQRLD FT+EEQD+LS IE +M+++RRI
Sbjct: 1669 SSPGEWKNKNRPPKSPGMVNDNSTMGALYTVTRQRLDMFTSEEQDVLSNIEPVMRSLRRI 1728
Query: 731 MHQTGYTDGDRLPADDQTYIVDNVFNYHPDKAVKAGAGLDYITVRRHSEFQDSRCFYAVS 910
MHQ+GY DGD L DDQ++++DNVFNYHPDKA K G G+D++TV RH FQDSRCF+ VS
Sbjct: 1729 MHQSGYNDGDPLSGDDQSFVLDNVFNYHPDKAAKMGCGIDHLTVNRHGSFQDSRCFFVVS 1788
Query: 911 VDGVLADFSYRKCLENFLKEKYPEKAESFIPKYFKK 1018
DG DFSYRKCL+N+++EK+P+ AE+FI KYF +
Sbjct: 1789 TDGRTEDFSYRKCLDNYIREKFPDLAETFIGKYFSR 1824
>ref|XP_004308588.1| PREDICTED: DNA-directed RNA polymerase E subunit 1-like [Fragaria
vesca subsp. vesca]
Length = 1991
Score = 201 bits (510), Expect = 7e-49
Identities = 125/362 (34%), Positives = 173/362 (47%), Gaps = 19/362 (5%)
Frame = +2
Query: 2 SKAWGSSNKESGSNNWNSIKKNSTDTTPAQGWGSKNDTGNTKGADESTHSK-----AWGX 166
S+ G E + +S K+ S D + W + +KG E S AWG
Sbjct: 1640 SEKKGDIELEQDESTRHSWKQKSADASSQGAWERQKSPDTSKGTWEQPKSAEMSHGAWGQ 1699
Query: 167 XXXXXXXXXXXXIQKNSSDSTPAQG-WGSKND------TWETKVVDESTDLKAWGSSKKD 325
++K +S T +QG WG + W + + + WG K
Sbjct: 1700 QKSPDVSQGVWGLEKPAS--TNSQGSWGQQKSPEIPQGNWGQQTSPDISQ-GTWGQQKSP 1756
Query: 326 SELNNWSSSQKNSEDSKAAXXXXXXXXXXXXXXXXXXXXXGSPNVDTSSDNDAKPQWXXX 505
QK S+ S+ A S ++A +
Sbjct: 1757 EMSQGSWGQQKPSDTSQPATVNQW-----------------------DSQSEAAVERHQQ 1793
Query: 506 XXXXXXXXXXXXXXXXXXXXPSSDGDWRNKRPRPV-------DDPNAPALFTATRQRLDS 664
P++ G+W+ K RP DD + A++TATRQRLD
Sbjct: 1794 WGHNGDSNKRKRFEGGRSWGPNA-GEWKGKNSRPAKSPGMVNDDSSVAAIYTATRQRLDI 1852
Query: 665 FTAEEQDLLSEIESLMKNIRRIMHQTGYTDGDRLPADDQTYIVDNVFNYHPDKAVKAGAG 844
FT+EEQD+LS IE M +IRRIMHQ+GY DGD+L A+D ++I+D VFN+HP+K K G+G
Sbjct: 1853 FTSEEQDVLSHIEPTMLSIRRIMHQSGYNDGDQLSAEDHSFILDKVFNFHPEKEAKMGSG 1912
Query: 845 LDYITVRRHSEFQDSRCFYAVSVDGVLADFSYRKCLENFLKEKYPEKAESFIPKYFKKPQ 1024
+DY TV RH FQ+SRC + +S DG DFSYRKCL+N +KEKYPE AE+F KYF +P+
Sbjct: 1913 IDYFTVDRHGSFQESRCLFVISTDGRKEDFSYRKCLQNMIKEKYPELAEAFNDKYFSRPR 1972
Query: 1025 PR 1030
PR
Sbjct: 1973 PR 1974
>gb|AAX12374.1| DNA-directed RNA polymerase alpha subunit [Spinacia oleracea]
Length = 1902
Score = 199 bits (505), Expect = 3e-48
Identities = 131/400 (32%), Positives = 184/400 (46%), Gaps = 45/400 (11%)
Frame = +2
Query: 23 NKESGSNNWNSIKKNST--DTTPAQG---WGSKNDTGNTKGADESTHSKAWGXXXXXXXX 187
N++ +W+S KK S + QG W + ++ A+ ST+S W
Sbjct: 1498 NRQGAGKSWDSKKKESNVQSSWAQQGDSTWKDSKEARSSVKANNSTNSGGWSTGKALVDG 1557
Query: 188 XXXXX-------IQKNSSDSTPAQGWGSKN------DTWETKVVDESTDLKAWGSSKKD- 325
Q S+D + G K+ +W+ K V+ T +WG +
Sbjct: 1558 VSSSWGSQKEDRPQPKSNDRSVGDGNFDKDAKEEGLSSWDAKKVERKTQ-SSWGQPSESK 1616
Query: 326 ----SELNNWSSSQKN---------SEDSKAAXXXXXXXXXXXXXXXXXXXXXGSPNVDT 466
S ++W S + N SED+ A G
Sbjct: 1617 NSAQSSADHWGSDKSNQPGKSSGWGSEDTNAGKDSEKQDSWGKSNVSTWKKESGEK---L 1673
Query: 467 SSDNDAKPQWXXXXXXXXXXXXXXXXXXXXXXXPSSDGDWR-------------NKRPRP 607
+D++ W S+ G+W+ N+ PR
Sbjct: 1674 HGSDDSQSPWGQPGGSGWNKKQPEGGRGWGS---SNTGEWKSRKNQNQNQNQNQNRPPRG 1730
Query: 608 VDDPNAPALFTATRQRLDSFTAEEQDLLSEIESLMKNIRRIMHQTGYTDGDRLPADDQTY 787
+D + TATR+R+D F EE+D+LSE+ESLM++IRRIMHQ+G DG+ L DDQTY
Sbjct: 1731 PNDDSPRVALTATRKRMDEFPTEEKDVLSEVESLMQSIRRIMHQSGCVDGEPLLPDDQTY 1790
Query: 788 IVDNVFNYHPDKAVKAGAGLDYITVRRHSEFQDSRCFYAVSVDGVLADFSYRKCLENFLK 967
++DN+ NYHPDKA K GAG+D+ITV++HS FQ+SRCFY VS DG DFSY KC+E F+K
Sbjct: 1791 LIDNILNYHPDKAAKIGAGVDFITVKKHSNFQESRCFYVVSTDGKDTDFSYIKCIETFVK 1850
Query: 968 EKYPEKAESFIPKYFKKPQPRPGWNRDQQGPPPPRGEAGT 1087
KYP AESF KYF++ Q R Q P P + T
Sbjct: 1851 GKYPSVAESFTSKYFRRSQ------RPQPASPSPASPSPT 1884
>ref|XP_004511031.1| PREDICTED: DNA-directed RNA polymerase E subunit 1-like [Cicer
arietinum]
Length = 2263
Score = 192 bits (489), Expect = 2e-46
Identities = 138/403 (34%), Positives = 189/403 (46%), Gaps = 39/403 (9%)
Frame = +2
Query: 5 KAWGSS--------NKESGSNNWNSIKKNS----TDTTPAQG-WGSKNDTGNTKGADEST 145
KAWGSS +K+ ++W S K + T +P G WG+ D K D S+
Sbjct: 1858 KAWGSSKTEVHEGESKKVQEDSWKSQKWKAGADVTQDSPKMGSWGATKDATKPKSNDWSS 1917
Query: 146 HSKAWGXXXXXXXXXXXXXIQKNS-----------SDSTPAQGWGSKNDTWETKVVD--E 286
WG IQ++S S + Q SK++TWE K D +
Sbjct: 1918 ----WGKKKDEIHDGGSEKIQEDSWSSGKRKAESKSVADVMQEDSSKSNTWEHKSDDVKD 1973
Query: 287 STDLK------AWGSSKKDSELNNWSSSQKNSEDSKAAXXXXXXXXXXXXXXXXXXXXXG 448
S D K +WG K E W S +++ + +
Sbjct: 1974 SWDAKVPVANSSWGKPKSQ-ENQPWDSKNESNPTASSRGWD------------------- 2013
Query: 449 SPNVDTSSDNDAKPQWXXXXXXXXXXXXXXXXXXXXXXXPSSDGDWRNKRPRPVDDPNAP 628
S +SD+D QW S+ GDW+NK RP P
Sbjct: 2014 SQVASANSDSDKNFQWGKPGRESFKKNRFEGSQGSQGWG-SNAGDWKNKN-RPARPPGP- 2070
Query: 629 ALFTATRQRLDSFTAEEQDLLSEIESLMKNIRRIMHQTGYTDGDRLPADDQTYIVDNVFN 808
RLD +++EEQD+L +IE ++++IRRIM Q GY DGD L A+DQ Y+++NVF
Sbjct: 2071 --------RLDLYSSEEQDILKDIEPIVQSIRRIMQQQGYNDGDPLAAEDQQYVLENVFE 2122
Query: 809 YHPDKAVKAGAGLDYITVRRHSEFQDSRCFYAVSVDGVLADFSYRKCLENFLKEKYPEKA 988
+HPDK K G G+D++ V RHS FQ+SRCFY V DG DFSYRKCLE+F+++KY + A
Sbjct: 2123 HHPDKETKMGVGIDHVMVSRHSNFQESRCFYVVLKDGKKEDFSYRKCLESFVRKKYADTA 2182
Query: 989 ESFIPKYFKKPQPRPGWNRDQ-------QGPPPPRGEAGTPRG 1096
ESF KYF+KP+P+ RDQ Q P + TP G
Sbjct: 2183 ESFCGKYFRKPRPK----RDQIANSGGEQTANPGGEQTATPGG 2221